******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF524.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr8:28447541-28448041 1.0000 100 chr1:6347951-6348451 1.0000 100 chr2:27663586-27664086 1.0000 100 chr5:134632643-134633143 1.0000 100 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1.0000 100 chr2:240613431-240613931 1.0000 100 chr1:46132532-46133032 1.0000 100 chr14:24146704-24147204 1.0000 100 chr3:53347429-53347929 1.0000 100 chr6:53544855-53545355 1.0000 100 chr19:36488961-36489461 1.0000 100 chr16:57300262-57300762 1.0000 100 chr5:40835090-40835590 1.0000 100 chr16:10743680-10744180 1.0000 100 chr3:198173149-198173649 1.0000 100 chr17:50397314-50397814 1.0000 100 chr1:234723865-234724365 1.0000 100 chr19:43575261-43575761 1.0000 100 chr15:65530350-65530850 1.0000 100 chr15:64387533-64388033 1.0000 100 chr11:4094519-4095019 1.0000 100 chr5:176388737-176389237 1.0000 100 chr1:1375044-1375544 1.0000 100 chr10:97497796-97498296 1.0000 100 chr11:47578754-47579254 1.0000 100 chr1:151008333-151008833 1.0000 100 chr17:30708084-30708584 1.0000 100 chr7:30028135-30028635 1.0000 100 chr6:117675159-117675659 1.0000 100 chr1:36384853-36385353 1.0000 100 chr14:102524632-10252513 1.0000 100 chr19:37218050-37218550 1.0000 100 chr1:183471820-183472320 1.0000 100 chr17:44014686-44015186 1.0000 100 chr1:63523071-63523571 1.0000 100 chr19:36604758-36605258 1.0000 100 chr7:102572211-102572711 1.0000 100 chr17:74872610-74873110 1.0000 100 chr12:109999006-10999950 1.0000 100 chr15:65610894-65611394 1.0000 100 chr17:68019697-68020197 1.0000 100 chr5:65925741-65926241 1.0000 100 chr1:167714453-167714953 1.0000 100 chr16:66934282-66934782 1.0000 100 chr19:39341539-39342039 1.0000 100 chr19:35628798-35629298 1.0000 100 chr1:26695406-26695906 1.0000 100 chr19:41310157-41310657 1.0000 100 chr12:123601774-12360227 1.0000 100 chr17:45148354-45148854 1.0000 100 chr19:33176889-33177389 1.0000 100 chr19:14207225-14207725 1.0000 100 chr6:113971033-113971533 1.0000 100 chr19:37655849-37656349 1.0000 100 chr12:8243474-8243974 1.0000 100 chr19:58519533-58520033 1.0000 100 chr15:41116169-41116669 1.0000 100 chr1:37989807-37990307 1.0000 100 chr17:75034881-75035381 1.0000 100 chr1:163321574-163322074 1.0000 100 chr19:39125757-39126257 1.0000 100 chr1:25998106-25998606 1.0000 100 chr19:1383512-1384012 1.0000 100 chr1:93078913-93079413 1.0000 100 chrX:53422084-53422584 1.0000 100 chr17:1399805-1400305 1.0000 100 chr17:8222645-8223145 1.0000 100 chr4:4541810-4542310 1.0000 100 chr1:155244556-155245056 1.0000 100 chr16:78099303-78099803 1.0000 100 chr19:10416545-10417045 1.0000 100 chr19:44212336-44212836 1.0000 100 chr19:35740802-35741302 1.0000 100 chr19:35947329-35947829 1.0000 100 chr19:39390701-39391201 1.0000 100 chr19:43754975-43755475 1.0000 100 chr19:40190833-40191333 1.0000 100 chrX:73944044-73944544 1.0000 100 chr10:93702412-93702912 1.0000 100 chr10:133786848-13378734 1.0000 100 chr12:121793987-12179448 1.0000 100 chr19:4723792-4724292 1.0000 100 chr19:35643421-35643921 1.0000 100 chr16:89192217-89192717 1.0000 100 chr16:71808752-71809252 1.0000 100 chr12:12266886-12267386 1.0000 100 chr20:58650953-58651453 1.0000 100 chr21:39313558-39314058 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF524.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF524.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/meme_out -mod zoops -nmotifs 3 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF524.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.184 C 0.316 G 0.316 T 0.184 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF524.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background): A 0.188 C 0.312 G 0.312 T 0.188 ******************************************************************************** ******************************************************************************** MOTIF GGGVCTCGAACCCNSR MEME-1 width = 16 sites = 106 llr = 1126 E-value = 2.0e-086 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGVCTCGAACCCNSR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 21141:1:7a::13:3 pos.-specific C 21236:8:::aa9332 probability G 5773::1a3::::355 matrix T 1::13a1::::::21: bits 2.4 * 2.2 * * 1.9 * * 1.7 * *** Relative 1.4 * * *** Entropy 1.2 * ****** (15.3 bits) 1.0 * ****** 0.7 ********* 0.5 ** ********* 0.2 ************* ** 0.0 ---------------- Multilevel GGGACTCGAACCCGGG consensus GT G ACA sequence C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGVCTCGAACCCNSR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr19:33176889-33177389 - 16 1.41e-09 AGGCACCGCT GGGATTCGAACCCAGG ATCTCCTGTT chr17:8139234-8139734 + 28 1.41e-09 aggcaccgct gggattcgaacccagg atctcctgtt chr6:26532714-26533214 + 13 1.41e-09 aggccccgct gggattcgaacccagg atctcctgtt chr17:68019697-68020197 + 10 4.37e-09 GAcccagat gggactcgaacccaca atccccagct chr7:139340489-139340989 - 58 4.37e-09 CACCCCAGAT GGGACTCGAACCCACA ATCCCTGGCT chr16:57300262-57300762 + 28 6.85e-09 tgtcagaagt gggattcgaacccacg cctccagggg chr6:27605441-27605941 + 7 6.85e-09 agaagt gggattcgaacccacg cctccatacg chr16:22296985-22297485 - 11 6.85e-09 TGGCAGCGGT GGGATTCGAACCCACG CCCCCGAAGA chr6:28896001-28896501 + 32 6.85e-09 tgtcagaagt gggattcgaacccacg cctccattgg chr6:28212811-28213311 - 82 6.85e-09 GAT GGGATTCGAACCCACG TGTGCAGAGC chr17:8120745-8121245 - 42 9.14e-09 CGACTCTGGT GGGATTCGAACCCACA ACCTTTGAAT chr17:75034881-75035381 - 79 1.86e-08 CACGAA GGGACTCGAACCCTCA ATCTTCTGAT chr16:3150488-3150988 - 33 1.86e-08 CGACCACGAA GGGACTCGAACCCTCA ATCTTCTGAT chr1:146039196-146039696 - 52 2.80e-08 CGCCCAACGT GGGGCTCGAACCCACG ACCCTGAGAT chr6:26322647-26323147 - 18 2.80e-08 TAACCACGGA GGGATTCGAACCCTCA ATCTTCTGAT chr6:144216323-144216823 - 81 4.98e-08 GAGT GGGGTTCGAACCCACG CGGACATATG chr10:98446802-98447302 - 3 8.17e-08 TGGCAGGGGC GGGGCTCGAACCCGCG GA chr1:146036901-146037401 - 6 1.29e-07 TGCGTTGGCC GGGAATCGAACCCGGG TCAAC chr1:161530923-161531423 - 36 1.29e-07 TGCGTTGGCC GGGAATCGAACCCGGG TCAACTGCTT chr17:8221318-8221818 - 76 1.29e-07 GCGTTGGCC GGGAATCGAACCCGGG TCAACTGCTT chr19:45468913-45469413 + 60 1.29e-07 TCGGGAAGAG GGGCCTCGAACCCTCA GCCGCGCTGC chr6:125780037-125780537 + 20 1.29e-07 ttccctgacc gggaatcgaacccggg ccgcggcggt chr1:161421844-161422344 + 59 1.29e-07 ttccctgacc gggaatcgaacccggg ccgcggcggt chr12:124927078-12492757 + 77 1.57e-07 ctccccgtcg gggaatcgaaccccgg tctcccgc chr12:96035787-96036287 - 80 1.57e-07 CGTCG GGGAATCGAACCCCGG TCTCCCGCGT chr16:14285706-14286206 - 33 3.18e-07 AGGCACGGAC GGGGTTCGAACCCGTG ATCTTCGGTT chr12:124921523-12492202 + 42 4.41e-07 tggagatgcc ggggatcgaacccggg gcctcataca chr1:167715277-167715777 + 21 5.23e-07 gggctcgtcc gggatttgaacccggg acctctcgca chr17:45132864-45133364 - 61 6.21e-07 CGGCCTGTCC AAGCCTCGAACCCAGA ACCAGTTGCT chr12:76559222-76559722 - 37 7.29e-07 GACGCTTACG GGGCCTCGGACCCCGG CGCCGCGGCG chr6:157379972-157380472 + 74 8.57e-07 CACCTCTGCG GGGGCTCGGACCCGCG GCAACGCCTG chr16:56989460-56989960 - 20 1.15e-06 CTCTCCGTGC AGAATTCGAACCCCGA TCCTCTCCCT chr19:988844-989344 + 29 1.31e-06 AGAGCTTCTC AGCCCTCGAACCCACA ACCCCCCAGA chr6:28597424-28597924 + 75 1.31e-06 CATGGGACAT AGGATTTGAACCCTGG TTTGCTGACC chr19:33133091-33133591 - 46 1.71e-06 TTAGCCAGGC TGGTCTCGAACCCTTG ACCTCAAGTG chr19:33294468-33294968 - 46 1.95e-06 TTGGCCAGGC TGGTCTCGAACCCCTG ACTTCAGGTG chr1:32109110-32109610 + 75 1.95e-06 ttggccaggc tggtctcgaacccctg acctcaagtg chr8:28447541-28448041 - 2 1.95e-06 TTGGCCAGGC TGGTCTCGAACCCCTG A chr19:39412465-39412965 + 67 2.21e-06 GAGGGGTCCA GAGGCTCGGACCCGGG CGTCCGGAAT chr1:16545725-16546225 + 24 2.21e-06 tgcattggcc gggaattgaacccggg tctcccgcgt chr1:150876789-150877289 - 63 2.50e-06 TTGGCCAGGC TGGTTTCGAACCCCTG GCCACAGGTG chr19:47950075-47950575 - 75 2.50e-06 CTCGAACTCG TGCCCTCGAACCCTCG CCTCTCTGAG chr12:8243474-8243974 - 13 2.83e-06 AAGCCCAGCT AGGTCTCGGACCCTGA GCCCAGCCCC chr17:1628377-1628877 + 36 3.19e-06 CCCGTTTCCA TGGCCTCGGACCCCCG CGCCTCCATT chr12:52023472-52023972 + 80 4.52e-06 CTCATCCCCA TGGCCTCGAACCCCAG CCTGC chr1:176897745-176898245 - 56 5.03e-06 AGGGCAGGAA GGCCCTCGGACCCTCA GCTCCGGAGT chr12:56333780-56334280 - 29 5.03e-06 ATTGGAAGAA GCGCCTCGGACCCCGG TCCTTGGCGC chr17:28552199-28552699 + 35 5.03e-06 GCGTCCGGCT CCGACTCGGACCCAGA TTCGGATTCC chr19:38228485-38228985 + 83 5.60e-06 CAGGAGGGGC CAGGCTCGGACCCAGG CT chr19:39845929-39846429 + 37 6.88e-06 CTTCCCACAG GAGACTGGAACCCGTG CTCAGAACCC chr19:35545151-35545651 - 10 6.88e-06 AGGGTGGGGC GGGCCTCAAACCCGGA TCAGAACCC chr19:10416545-10417045 - 65 7.61e-06 CCTGCCGGTC GGGCCTAGAACCCGCC CCCGCCACTT chr17:74872610-74873110 - 80 7.61e-06 CGGCG TGGCCTCGGACCCGGC TGCCTCCCGC chr10:22229239-22229739 + 80 7.61e-06 cgtccctggg tgggctcgaaccacca acctt chr1:161427879-161428379 + 8 7.61e-06 ccctggg tgggctcgaaccacca acctttcggt chr19:10701087-10701587 - 41 7.61e-06 ACCATGGCAA CGGATTTGAACCCCTG GTCCTGGCTG chr6:142146855-142147355 - 44 8.38e-06 TTGGCTCTCG GCGGTTAGAACCCACA GAAGACCCGA chr6:110180275-110180775 - 15 9.25e-06 CTGTCCGAGT CCGATTCGGACCCTGA ACCCGAACCA chr17:48493763-48494263 + 16 9.25e-06 aggcaggcga atcactcgaacccggg aggcggaggt chr15:41116169-41116669 - 67 1.02e-05 GATCAGGGTC TCCCCTCGAACCCCGG TTCGCACGGG chr8:11466669-11467169 - 7 1.02e-05 GGACCCGGGG CGCGCTCGGACCCGGG GCGAGA chr6:28399466-28399966 + 42 1.12e-05 CGAAGGCAAG AGGCCTCGAACCCTTT TGGGACCCGG chr19:10380247-10380747 + 78 1.12e-05 CGGGGGAACA CAAGCTCGAACCCGGA CCCCTCC chr17:42798672-42799172 - 25 1.12e-05 ATTACCACCA CAGCCTCGAACCCTCC ACAGCTTTTT chr16:71808752-71809252 + 62 1.22e-05 GAATTATCCA AGAACTCGGACCCTGC CGAGGACTAT chr16:89192217-89192717 + 54 1.22e-05 CCTCCACCTG GACCCTCGGACCCTCG GACCCTCCTC chr19:38004557-38005057 + 20 1.22e-05 GCTGGGTGCT GGGATTGGAACCAGGA CACACATGCC chr5:141618917-141619417 + 67 1.34e-05 AGCGGACCTA ACCATTCGGACCCACG TGGGGGGGGG chr20:64101955-64102455 + 10 1.46e-05 CTTCAGCAG CGGCCTCGGACCCTCC CTCCAGGGGG chr1:26620502-26621002 + 58 1.46e-05 AGGGGCTGTC GGAGTTGGAACCCCGA AGAGATAAGG chr14:20662967-20663467 + 35 1.46e-05 tccttcgagc cggaatcgaaccagcg acctaaggat chr19:10420603-10421103 + 67 1.46e-05 CCTGTGGCGG CAGCCTCGGACCCCCA TCCGTATCCA chr17:78476079-78476579 + 39 1.59e-05 TATCACGTGG AACCCTCGGACCCACA GCCACGTGCC chr5:140718694-140719194 - 82 1.59e-05 CGC GGGTCTCGAACCACCC AGAGAGGTGG chr2:26847617-26848117 + 78 1.73e-05 GCCCTCCGTC CGCTCTCGGACCCCGG CCCTGCA chr2:85595500-85596000 - 27 1.88e-05 CTTCTGACAC AGCCCTCGGACCCTGC TCGATAGCGG chr2:216498646-216499146 + 3 2.04e-05 TC TGGGCTCGGACCTAGG TCGCGGCGAC chr2:199955389-199955889 - 6 2.04e-05 CAACCCGCCC CGCGCTCGGACCCAGC CACTC chr19:49877999-49878499 + 60 2.04e-05 GGGAGGGAGC AGGGCTCGGACCCGCT CCGAGCGGGA chr22:28741726-28742226 + 37 2.21e-05 AGGGAGAGCG GAACTTAGAACCCGGG TTCCCCTCGG chr7:27130975-27131475 - 65 2.21e-05 TTTCGCCTGT TAGCCTAGAACCCCTG AAGGACACGA chr12:26111114-26111614 + 78 2.39e-05 gaattgcttg aacccttgaacccggg aggcgga chr1:54715649-54716149 + 23 2.39e-05 CTCGCTTCAC GGCGCTGGGACCCGGG CTGGAAGGCA chr6:117675159-117675659 + 52 2.79e-05 GAACGGGCCA CGTTCTCGGACCCAGA AGCCGCGTCA chr15:72473893-72474393 + 57 2.79e-05 CACAGCGGCA GCGGATCGAACCAGGA AAGCAATTCC chr20:833636-834136 - 44 2.79e-05 GGAGAGGCTG ACAGCTCGGACCCGGG CCGGTAGTGG chr19:35740802-35741302 - 75 3.01e-05 GGCCGCCTTG AATACTGGAACCCAGA CAACAAGTGC chr16:66934282-66934782 + 49 3.01e-05 CGCGGCCCTG GCTGCTCGGACCCGGG AACATGATGG chr8:99012903-99013403 + 8 3.01e-05 CAGGGTC GGAGCTGGGACCCTGG CTAGCAGAAC chr17:76121227-76121727 - 84 3.24e-05 C GGGGTTCGACCCCCGA GCACGGCGGG chr17:952513-953013 + 63 3.48e-05 CAGACAGACC AAGGTTGGAACCCGGC AGGTACCACG chr19:40055851-40056351 - 66 3.48e-05 TTCGTGGACT GGGACTCGAACCTGAC CGACCCGGCA chr12:124914581-12491508 - 46 3.73e-05 CATAAGACTC GGCCTTAGAACCCCAG TATCAGCAGA chr17:75905020-75905520 + 63 3.73e-05 GACTCTGCTT GGGTTTAAAACCCAGA TTGAGggctg chr8:22010233-22010733 - 55 3.73e-05 ACGGTGCGTG TGAACTCGAACCTCTG CCAGGCACAC chr3:9398374-9398874 - 26 3.73e-05 GGCTCAACTC CAGGCTCGAACCCTAC ACATTCAACG chr7:39566181-39566681 - 42 4.00e-05 GATCAAGGAG GCTGCTTGAACCCACG ACATCACCGA chr17:66570794-66571294 - 72 4.28e-05 ATATGTAAAC ACGATTAGAACCCCTC TGGAATGTGT chr14:22928944-22929444 + 64 4.28e-05 TCTCCGTCCC CGAGTTCGGACCCCGC ATTCCGCTCG chr11:4094519-4095019 + 59 4.59e-05 GTCGAGTAAC GTCATTCGAACCCCGT CGCGCCCCTT chr19:40190833-40191333 - 7 4.90e-05 AGGCAGGACG GCCCCTCGGACCCCCC GACCGA chr4:41256564-41257064 + 37 5.23e-05 CTGCGCACGG GGGGTTCGTACCCATC TGGCCGCGAC chr16:31142110-31142610 + 39 5.95e-05 CTCCCTAGAG CCCACTCGGACCCGCC TTCCGCAGGC chr1:146035807-146036307 - 61 6.35e-05 AGGCAGGAGA ATCGCTTGAACCCGGG AGGCGGAGGT chr3:53347429-53347929 - 77 6.75e-05 ACATCGTA GGGCCGCGGACCCTGA CAACGCCGGA chr12:121888724-12188922 - 76 7.19e-05 CGACTTGGG GCGCCCCGAACCCACA CTCACGCTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGVCTCGAACCCNSR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:33176889-33177389 1.4e-09 15_[-1]_69 chr17:8139234-8139734 1.4e-09 27_[+1]_57 chr6:26532714-26533214 1.4e-09 12_[+1]_72 chr17:68019697-68020197 4.4e-09 9_[+1]_75 chr7:139340489-139340989 4.4e-09 57_[-1]_27 chr16:57300262-57300762 6.8e-09 27_[+1]_57 chr6:27605441-27605941 6.8e-09 6_[+1]_78 chr16:22296985-22297485 6.8e-09 10_[-1]_74 chr6:28896001-28896501 6.8e-09 31_[+1]_53 chr6:28212811-28213311 6.8e-09 81_[-1]_3 chr17:8120745-8121245 9.1e-09 41_[-1]_43 chr17:75034881-75035381 1.9e-08 78_[-1]_6 chr16:3150488-3150988 1.9e-08 32_[-1]_52 chr1:146039196-146039696 2.8e-08 51_[-1]_33 chr6:26322647-26323147 2.8e-08 17_[-1]_67 chr6:144216323-144216823 5e-08 80_[-1]_4 chr10:98446802-98447302 8.2e-08 2_[-1]_82 chr1:146036901-146037401 1.3e-07 5_[-1]_79 chr1:161530923-161531423 1.3e-07 35_[-1]_49 chr17:8221318-8221818 1.3e-07 75_[-1]_9 chr19:45468913-45469413 1.3e-07 59_[+1]_25 chr6:125780037-125780537 1.3e-07 19_[+1]_65 chr1:161421844-161422344 1.3e-07 58_[+1]_26 chr12:124927078-12492757 1.6e-07 76_[+1]_8 chr12:96035787-96036287 1.6e-07 79_[-1]_5 chr16:14285706-14286206 3.2e-07 32_[-1]_52 chr12:124921523-12492202 4.4e-07 41_[+1]_43 chr1:167715277-167715777 5.2e-07 20_[+1]_64 chr17:45132864-45133364 6.2e-07 60_[-1]_24 chr12:76559222-76559722 7.3e-07 36_[-1]_48 chr6:157379972-157380472 8.6e-07 73_[+1]_11 chr16:56989460-56989960 1.1e-06 19_[-1]_65 chr19:988844-989344 1.3e-06 28_[+1]_56 chr6:28597424-28597924 1.3e-06 74_[+1]_10 chr19:33133091-33133591 1.7e-06 45_[-1]_39 chr19:33294468-33294968 1.9e-06 45_[-1]_39 chr1:32109110-32109610 1.9e-06 74_[+1]_10 chr8:28447541-28448041 1.9e-06 1_[-1]_83 chr19:39412465-39412965 2.2e-06 66_[+1]_18 chr1:16545725-16546225 2.2e-06 23_[+1]_61 chr1:150876789-150877289 2.5e-06 62_[-1]_22 chr19:47950075-47950575 2.5e-06 74_[-1]_10 chr12:8243474-8243974 2.8e-06 12_[-1]_72 chr17:1628377-1628877 3.2e-06 35_[+1]_49 chr12:52023472-52023972 4.5e-06 79_[+1]_5 chr1:176897745-176898245 5e-06 55_[-1]_29 chr12:56333780-56334280 5e-06 28_[-1]_56 chr17:28552199-28552699 5e-06 34_[+1]_50 chr19:38228485-38228985 5.6e-06 82_[+1]_2 chr19:39845929-39846429 6.9e-06 36_[+1]_48 chr19:35545151-35545651 6.9e-06 9_[-1]_75 chr19:10416545-10417045 7.6e-06 64_[-1]_20 chr17:74872610-74873110 7.6e-06 79_[-1]_5 chr10:22229239-22229739 7.6e-06 79_[+1]_5 chr1:161427879-161428379 7.6e-06 7_[+1]_77 chr19:10701087-10701587 7.6e-06 40_[-1]_44 chr6:142146855-142147355 8.4e-06 43_[-1]_41 chr6:110180275-110180775 9.2e-06 14_[-1]_70 chr17:48493763-48494263 9.2e-06 15_[+1]_69 chr15:41116169-41116669 1e-05 66_[-1]_18 chr8:11466669-11467169 1e-05 6_[-1]_78 chr6:28399466-28399966 1.1e-05 41_[+1]_43 chr19:10380247-10380747 1.1e-05 77_[+1]_7 chr17:42798672-42799172 1.1e-05 24_[-1]_60 chr16:71808752-71809252 1.2e-05 61_[+1]_23 chr16:89192217-89192717 1.2e-05 53_[+1]_31 chr19:38004557-38005057 1.2e-05 19_[+1]_65 chr5:141618917-141619417 1.3e-05 66_[+1]_18 chr20:64101955-64102455 1.5e-05 9_[+1]_75 chr1:26620502-26621002 1.5e-05 57_[+1]_27 chr14:20662967-20663467 1.5e-05 34_[+1]_50 chr19:10420603-10421103 1.5e-05 66_[+1]_18 chr17:78476079-78476579 1.6e-05 38_[+1]_46 chr5:140718694-140719194 1.6e-05 81_[-1]_3 chr2:26847617-26848117 1.7e-05 77_[+1]_7 chr2:85595500-85596000 1.9e-05 26_[-1]_58 chr2:216498646-216499146 2e-05 2_[+1]_82 chr2:199955389-199955889 2e-05 5_[-1]_79 chr19:49877999-49878499 2e-05 59_[+1]_25 chr22:28741726-28742226 2.2e-05 36_[+1]_48 chr7:27130975-27131475 2.2e-05 64_[-1]_20 chr12:26111114-26111614 2.4e-05 77_[+1]_7 chr1:54715649-54716149 2.4e-05 22_[+1]_62 chr6:117675159-117675659 2.8e-05 51_[+1]_33 chr15:72473893-72474393 2.8e-05 56_[+1]_28 chr20:833636-834136 2.8e-05 43_[-1]_41 chr19:35740802-35741302 3e-05 74_[-1]_10 chr16:66934282-66934782 3e-05 48_[+1]_36 chr8:99012903-99013403 3e-05 7_[+1]_77 chr17:76121227-76121727 3.2e-05 83_[-1]_1 chr17:952513-953013 3.5e-05 62_[+1]_22 chr19:40055851-40056351 3.5e-05 65_[-1]_19 chr12:124914581-12491508 3.7e-05 45_[-1]_39 chr17:75905020-75905520 3.7e-05 62_[+1]_22 chr8:22010233-22010733 3.7e-05 54_[-1]_30 chr3:9398374-9398874 3.7e-05 25_[-1]_59 chr7:39566181-39566681 4e-05 41_[-1]_43 chr17:66570794-66571294 4.3e-05 71_[-1]_13 chr14:22928944-22929444 4.3e-05 63_[+1]_21 chr11:4094519-4095019 4.6e-05 58_[+1]_26 chr19:40190833-40191333 4.9e-05 6_[-1]_78 chr4:41256564-41257064 5.2e-05 36_[+1]_48 chr16:31142110-31142610 6e-05 38_[+1]_46 chr1:146035807-146036307 6.3e-05 60_[-1]_24 chr3:53347429-53347929 6.8e-05 76_[-1]_8 chr12:121888724-12188922 7.2e-05 75_[-1]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGVCTCGAACCCNSR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGVCTCGAACCCNSR width=16 seqs=106 chr19:33176889-33177389 ( 16) GGGATTCGAACCCAGG 1 chr17:8139234-8139734 ( 28) GGGATTCGAACCCAGG 1 chr6:26532714-26533214 ( 13) GGGATTCGAACCCAGG 1 chr17:68019697-68020197 ( 10) GGGACTCGAACCCACA 1 chr7:139340489-139340989 ( 58) GGGACTCGAACCCACA 1 chr16:57300262-57300762 ( 28) GGGATTCGAACCCACG 1 chr6:27605441-27605941 ( 7) GGGATTCGAACCCACG 1 chr16:22296985-22297485 ( 11) GGGATTCGAACCCACG 1 chr6:28896001-28896501 ( 32) GGGATTCGAACCCACG 1 chr6:28212811-28213311 ( 82) GGGATTCGAACCCACG 1 chr17:8120745-8121245 ( 42) GGGATTCGAACCCACA 1 chr17:75034881-75035381 ( 79) GGGACTCGAACCCTCA 1 chr16:3150488-3150988 ( 33) GGGACTCGAACCCTCA 1 chr1:146039196-146039696 ( 52) GGGGCTCGAACCCACG 1 chr6:26322647-26323147 ( 18) GGGATTCGAACCCTCA 1 chr6:144216323-144216823 ( 81) GGGGTTCGAACCCACG 1 chr10:98446802-98447302 ( 3) GGGGCTCGAACCCGCG 1 chr1:146036901-146037401 ( 6) GGGAATCGAACCCGGG 1 chr1:161530923-161531423 ( 36) GGGAATCGAACCCGGG 1 chr17:8221318-8221818 ( 76) GGGAATCGAACCCGGG 1 chr19:45468913-45469413 ( 60) GGGCCTCGAACCCTCA 1 chr6:125780037-125780537 ( 20) GGGAATCGAACCCGGG 1 chr1:161421844-161422344 ( 59) GGGAATCGAACCCGGG 1 chr12:124927078-12492757 ( 77) GGGAATCGAACCCCGG 1 chr12:96035787-96036287 ( 80) GGGAATCGAACCCCGG 1 chr16:14285706-14286206 ( 33) GGGGTTCGAACCCGTG 1 chr12:124921523-12492202 ( 42) GGGGATCGAACCCGGG 1 chr1:167715277-167715777 ( 21) GGGATTTGAACCCGGG 1 chr17:45132864-45133364 ( 61) AAGCCTCGAACCCAGA 1 chr12:76559222-76559722 ( 37) GGGCCTCGGACCCCGG 1 chr6:157379972-157380472 ( 74) GGGGCTCGGACCCGCG 1 chr16:56989460-56989960 ( 20) AGAATTCGAACCCCGA 1 chr19:988844-989344 ( 29) AGCCCTCGAACCCACA 1 chr6:28597424-28597924 ( 75) AGGATTTGAACCCTGG 1 chr19:33133091-33133591 ( 46) TGGTCTCGAACCCTTG 1 chr19:33294468-33294968 ( 46) TGGTCTCGAACCCCTG 1 chr1:32109110-32109610 ( 75) TGGTCTCGAACCCCTG 1 chr8:28447541-28448041 ( 2) TGGTCTCGAACCCCTG 1 chr19:39412465-39412965 ( 67) GAGGCTCGGACCCGGG 1 chr1:16545725-16546225 ( 24) GGGAATTGAACCCGGG 1 chr1:150876789-150877289 ( 63) TGGTTTCGAACCCCTG 1 chr19:47950075-47950575 ( 75) TGCCCTCGAACCCTCG 1 chr12:8243474-8243974 ( 13) AGGTCTCGGACCCTGA 1 chr17:1628377-1628877 ( 36) TGGCCTCGGACCCCCG 1 chr12:52023472-52023972 ( 80) TGGCCTCGAACCCCAG 1 chr1:176897745-176898245 ( 56) GGCCCTCGGACCCTCA 1 chr12:56333780-56334280 ( 29) GCGCCTCGGACCCCGG 1 chr17:28552199-28552699 ( 35) CCGACTCGGACCCAGA 1 chr19:38228485-38228985 ( 83) CAGGCTCGGACCCAGG 1 chr19:39845929-39846429 ( 37) GAGACTGGAACCCGTG 1 chr19:35545151-35545651 ( 10) GGGCCTCAAACCCGGA 1 chr19:10416545-10417045 ( 65) GGGCCTAGAACCCGCC 1 chr17:74872610-74873110 ( 80) TGGCCTCGGACCCGGC 1 chr10:22229239-22229739 ( 80) TGGGCTCGAACCACCA 1 chr1:161427879-161428379 ( 8) TGGGCTCGAACCACCA 1 chr19:10701087-10701587 ( 41) CGGATTTGAACCCCTG 1 chr6:142146855-142147355 ( 44) GCGGTTAGAACCCACA 1 chr6:110180275-110180775 ( 15) CCGATTCGGACCCTGA 1 chr17:48493763-48494263 ( 16) ATCACTCGAACCCGGG 1 chr15:41116169-41116669 ( 67) TCCCCTCGAACCCCGG 1 chr8:11466669-11467169 ( 7) CGCGCTCGGACCCGGG 1 chr6:28399466-28399966 ( 42) AGGCCTCGAACCCTTT 1 chr19:10380247-10380747 ( 78) CAAGCTCGAACCCGGA 1 chr17:42798672-42799172 ( 25) CAGCCTCGAACCCTCC 1 chr16:71808752-71809252 ( 62) AGAACTCGGACCCTGC 1 chr16:89192217-89192717 ( 54) GACCCTCGGACCCTCG 1 chr19:38004557-38005057 ( 20) GGGATTGGAACCAGGA 1 chr5:141618917-141619417 ( 67) ACCATTCGGACCCACG 1 chr20:64101955-64102455 ( 10) CGGCCTCGGACCCTCC 1 chr1:26620502-26621002 ( 58) GGAGTTGGAACCCCGA 1 chr14:20662967-20663467 ( 35) CGGAATCGAACCAGCG 1 chr19:10420603-10421103 ( 67) CAGCCTCGGACCCCCA 1 chr17:78476079-78476579 ( 39) AACCCTCGGACCCACA 1 chr5:140718694-140719194 ( 82) GGGTCTCGAACCACCC 1 chr2:26847617-26848117 ( 78) CGCTCTCGGACCCCGG 1 chr2:85595500-85596000 ( 27) AGCCCTCGGACCCTGC 1 chr2:216498646-216499146 ( 3) TGGGCTCGGACCTAGG 1 chr2:199955389-199955889 ( 6) CGCGCTCGGACCCAGC 1 chr19:49877999-49878499 ( 60) AGGGCTCGGACCCGCT 1 chr22:28741726-28742226 ( 37) GAACTTAGAACCCGGG 1 chr7:27130975-27131475 ( 65) TAGCCTAGAACCCCTG 1 chr12:26111114-26111614 ( 78) AACCCTTGAACCCGGG 1 chr1:54715649-54716149 ( 23) GGCGCTGGGACCCGGG 1 chr6:117675159-117675659 ( 52) CGTTCTCGGACCCAGA 1 chr15:72473893-72474393 ( 57) GCGGATCGAACCAGGA 1 chr20:833636-834136 ( 44) ACAGCTCGGACCCGGG 1 chr19:35740802-35741302 ( 75) AATACTGGAACCCAGA 1 chr16:66934282-66934782 ( 49) GCTGCTCGGACCCGGG 1 chr8:99012903-99013403 ( 8) GGAGCTGGGACCCTGG 1 chr17:76121227-76121727 ( 84) GGGGTTCGACCCCCGA 1 chr17:952513-953013 ( 63) AAGGTTGGAACCCGGC 1 chr19:40055851-40056351 ( 66) GGGACTCGAACCTGAC 1 chr12:124914581-12491508 ( 46) GGCCTTAGAACCCCAG 1 chr17:75905020-75905520 ( 63) GGGTTTAAAACCCAGA 1 chr8:22010233-22010733 ( 55) TGAACTCGAACCTCTG 1 chr3:9398374-9398874 ( 26) CAGGCTCGAACCCTAC 1 chr7:39566181-39566681 ( 42) GCTGCTTGAACCCACG 1 chr17:66570794-66571294 ( 72) ACGATTAGAACCCCTC 1 chr14:22928944-22929444 ( 64) CGAGTTCGGACCCCGC 1 chr11:4094519-4095019 ( 59) GTCATTCGAACCCCGT 1 chr19:40190833-40191333 ( 7) GCCCCTCGGACCCCCC 1 chr4:41256564-41257064 ( 37) GGGGTTCGTACCCATC 1 chr16:31142110-31142610 ( 39) CCCACTCGGACCCGCC 1 chr1:146035807-146036307 ( 61) ATCGCTTGAACCCGGG 1 chr3:53347429-53347929 ( 77) GGGCCGCGGACCCTGA 1 chr12:121888724-12188922 ( 76) GCGCCCCGAACCCACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGVCTCGAACCCNSR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 10.0884 E= 2.0e-086 -15 -105 78 -41 -41 -124 116 -273 -115 -80 116 -232 101 -29 -19 -99 -86 95 -1337 64 -1337 -504 -504 238 -151 136 -224 -151 -331 -1337 165 -1337 187 -1337 -5 -431 240 -504 -1337 -1337 -1337 168 -1337 -1337 -1337 168 -1337 -1337 -173 155 -1337 -273 49 -29 -5 -7 -232 16 65 -62 59 -105 78 -273 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGVCTCGAACCCNSR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 106 E= 2.0e-086 0.169811 0.150943 0.537736 0.141509 0.141509 0.132075 0.698113 0.028302 0.084906 0.179245 0.698113 0.037736 0.377358 0.254717 0.273585 0.094340 0.103774 0.603774 0.000000 0.292453 0.000000 0.009434 0.009434 0.981132 0.066038 0.801887 0.066038 0.066038 0.018868 0.000000 0.981132 0.000000 0.688679 0.000000 0.301887 0.009434 0.990566 0.009434 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.056604 0.915094 0.000000 0.028302 0.264151 0.254717 0.301887 0.179245 0.037736 0.349057 0.490566 0.122642 0.283019 0.150943 0.537736 0.028302 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGVCTCGAACCCNSR MEME-1 regular expression -------------------------------------------------------------------------------- GGG[AGC][CT]TCG[AG]ACCC[GAC][GC][GA] -------------------------------------------------------------------------------- Time 363.71 secs. ******************************************************************************** ******************************************************************************** MOTIF TRTKTKTGTGTKTKTGKKWGWG MEME-2 width = 22 sites = 46 llr = 694 E-value = 4.2e-076 ******************************************************************************** -------------------------------------------------------------------------------- Motif TRTKTKTGTGTKTKTGKKWGWG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 23:::11:131:1:12:1323: pos.-specific C ::::11:::::1:1::1::11: probability G 1625241a:713:5:745:729 matrix T 7275858:91768481546141 bits 2.4 2.2 1.9 * 1.7 * * Relative 1.4 *** * * Entropy 1.2 * * * *** * * * * * (21.8 bits) 1.0 * * * *** * * * * * 0.7 ***** ******* ***** * 0.5 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel TGTGTTTGTGTTTGTGTGTGTG consensus AAGT G A G T GTA A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTKTKTGTGTKTKTGKKWGWG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr20:52972210-52972710 + 16 7.25e-13 tgcgagggtg tgtgtgtgtgtttgtgtgtgtg tgcatatgtg chr19:35947329-35947829 + 70 6.21e-12 GCACTGTTCg tgtgtgtgtgtgtgtgtgtgtg tgtgtgtgt chr10:101830477-10183097 - 7 6.21e-12 CGTGCGTGTG TGTGTGTGTGTGTGTGTGTGTG TGGGCG chr12:57111950-57112450 - 2 6.21e-12 TGCACGTGTG TGTGTGTGTGTGTGTGTGTGTG T chr19:53979834-53980334 + 25 6.21e-12 GGCGCGCACg tgtgtgtgtgtgtgtgtgtgtg tgtgtgcgcg chr5:93582517-93583017 + 60 1.32e-11 CGTAAgtgtg tgtgtgtgtatgtgtgtgtgtg tgtgACCATA chr1:32109110-32109610 + 27 3.17e-11 gcccggctga tttttgtgtgtttttggtagag acagggtttc chr2:55519011-55519511 + 61 5.20e-11 acgccaggct aatttttgtatttttggtagag acgaggtttc chr1:1207724-1208224 - 18 9.79e-11 CCTGGCTAAT TTTTTTTGTATTTTTAGTAGAG ACGGGCTTTC chr19:44259452-44259952 + 12 2.07e-10 acgcccagct aatttttgtatttttagtagag acggggtttc chr19:39033095-39033595 - 9 2.07e-10 ACGCCCAGCT AATTTTTGTATTTTTAGTAGAG ACGGGGTT chr8:28447541-28448041 - 44 2.07e-10 ACGCCTGGCT AATTTTTGTATTTTTAGTAGAG ATGGGGTTTC chr15:70097572-70098072 - 29 3.65e-10 GGGCACTTTT TTTTTTGGTGTGTGTGTGTGTG CGTGCGCGCG chr1:156660167-156660667 + 22 4.20e-10 CGCgtgtgcc tgtgtgtgtgtgtgtgtgtacg cgtgcgtgtg chr19:36916364-36916864 + 76 6.32e-10 ggagttagtg tgggtgtgtggttgtgtgtgtg agt chr19:6532213-6532713 + 55 1.78e-09 tggatatttg tgttcgtgtgtgtctgtgtgtg ttcgtgtggg chr22:37848884-37849384 + 67 2.01e-09 cactcccggc taattttgtatttttagtagag acggggtttc chr12:124922465-12492296 + 39 3.27e-09 cacgcctgct aatttctgtatttttagtagag atgggggggg chr19:17225565-17226065 - 65 7.36e-09 TGCTGTTGTT GTTGTTTGTATTTTTAGTAGAG ACGGGGTTTC chr2:241881314-241881814 + 78 9.20e-09 GGCGTGGCCC AGCgtgtgtgtgtgtgtgtgtg t chr19:36572884-36573384 - 9 1.15e-08 TACGACGTCA TTGTGGTGTGTGTGTGTGAGAG ACGGAGAC chr19:36604758-36605258 - 13 1.42e-08 GGAGGGAGAC TGTGTGATTGTGTTTGTGTGTG CCGTTCTGTG chr1:65264438-65264938 + 43 1.96e-08 TTCCATGCCA TGTTTTGGAATTTGTGTTTACG TCTGCCTTCA chr10:69318965-69319465 + 26 1.96e-08 AGTGTCTCTG TGTGTGTGCGTTTTTGGGAGGG GGGCAATCGG chr19:39341539-39342039 - 23 4.44e-08 AAACGGGAGT TGTTGCTGTGACTTTGGTTGTG ATCTGTGCGT chr1:148522534-148523034 + 68 5.40e-08 GAGCCGTAAG TGTTTTTGTAATTCAGGGTGCG GGCTCGTGTT chr19:36686874-36687374 - 33 1.27e-07 AAGAGCCTTT TAGGTCTGTGGTGTTGTGTGTG TAACGGGTAA chr19:49818148-49818648 + 47 3.66e-07 TGGCCGACGT GGTGTTTGTGATTGAGGGTACG GCCAACCTGG chr17:43170838-43171338 + 8 4.33e-07 CAGCCTC AATGTTTGTTATTGTTGTTCGG GTTCAGGTTG chr7:66920791-66921291 - 23 4.33e-07 TGTGCCGGTC TGGTGTTGTGCGTGTGCGTGTG TGCGTAGTGC chr5:1950664-1951164 + 4 6.54e-07 TGC TGTGTATGTGTCATCTGTTGTG CATGCGTGTG chr1:146035586-146036086 - 75 7.09e-07 TCTT TATTTGTGTTTTTCTACATTTT CTGTATTTCA chr19:36488961-36489461 - 24 8.32e-07 AGCTTGTGCC TGGTTGAGTGTTACTGCGTTTG TCCCCGTAGT chr12:57782328-57782828 + 13 8.32e-07 tgttacccac atttcttgtgttgttgttTTGT GACGACTTTA chr1:234723865-234724365 + 35 1.05e-06 ggagtagaga tgtgtgtgtgagagagagagag agagagaaat chr6:28212811-28213311 + 7 1.94e-06 AATTCA AGTTGTTGATTCTTTGTGTgac gaggtggccg chr12:124921523-12492202 - 7 2.24e-06 ATCTCCATTG TAGTTTTGTTGCTTTCTGTATT CGTTTT chr19:40715313-40715813 - 11 2.24e-06 TGGGTGCCAG AATGTGGGTGTTTGTGCAAAGT GGAGGGGCTC chr19:37218050-37218550 + 73 2.79e-06 TCTGGAGTGT TGGGCATGTATGAGTGTGTCGG GCATGT chr12:57726149-57726649 + 31 3.00e-06 GAGAGGGAGG TGAGTTTGTGTCTTCTGGAAGG CGTGGGGGCT chr8:33513404-33513904 + 1 3.00e-06 . TGTATTTGTGGGCTTGTTACTT ATGATAACAG chr19:38224172-38224672 - 52 3.00e-06 CGAGTCCAGG TGTGCATGTGGTTGTGTGCACG CGAGAGCAGG chr3:198173149-198173649 + 27 4.56e-06 ggttctggtt gggtttagtgttagggtttagg gttagggtta chr2:240613431-240613931 - 52 5.60e-06 AGGTTCGGAA TAGGGTGGAGTTAGTGTTATGG TTAGGTTTAG chr5:148825895-148826395 + 58 6.40e-06 TCTCAGTGTC TATGGCTGTGGTTCGGTATAAG TCTGAGCATG chr17:1293396-1293896 + 78 6.84e-06 TGATGATGTC ATGAGTTGAGTTTGATGTTGTG G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTKTKTGTGTKTKTGKKWGWG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:52972210-52972710 7.2e-13 15_[+2]_63 chr19:35947329-35947829 6.2e-12 69_[+2]_9 chr10:101830477-10183097 6.2e-12 6_[-2]_72 chr12:57111950-57112450 6.2e-12 1_[-2]_77 chr19:53979834-53980334 6.2e-12 24_[+2]_54 chr5:93582517-93583017 1.3e-11 59_[+2]_19 chr1:32109110-32109610 3.2e-11 26_[+2]_52 chr2:55519011-55519511 5.2e-11 60_[+2]_18 chr1:1207724-1208224 9.8e-11 17_[-2]_61 chr19:44259452-44259952 2.1e-10 11_[+2]_67 chr19:39033095-39033595 2.1e-10 8_[-2]_70 chr8:28447541-28448041 2.1e-10 43_[-2]_35 chr15:70097572-70098072 3.7e-10 28_[-2]_50 chr1:156660167-156660667 4.2e-10 21_[+2]_57 chr19:36916364-36916864 6.3e-10 75_[+2]_3 chr19:6532213-6532713 1.8e-09 54_[+2]_24 chr22:37848884-37849384 2e-09 66_[+2]_12 chr12:124922465-12492296 3.3e-09 38_[+2]_40 chr19:17225565-17226065 7.4e-09 64_[-2]_14 chr2:241881314-241881814 9.2e-09 77_[+2]_1 chr19:36572884-36573384 1.1e-08 8_[-2]_70 chr19:36604758-36605258 1.4e-08 12_[-2]_66 chr1:65264438-65264938 2e-08 42_[+2]_36 chr10:69318965-69319465 2e-08 25_[+2]_53 chr19:39341539-39342039 4.4e-08 22_[-2]_56 chr1:148522534-148523034 5.4e-08 67_[+2]_11 chr19:36686874-36687374 1.3e-07 32_[-2]_46 chr19:49818148-49818648 3.7e-07 46_[+2]_32 chr17:43170838-43171338 4.3e-07 7_[+2]_71 chr7:66920791-66921291 4.3e-07 22_[-2]_56 chr5:1950664-1951164 6.5e-07 3_[+2]_75 chr1:146035586-146036086 7.1e-07 74_[-2]_4 chr19:36488961-36489461 8.3e-07 23_[-2]_55 chr12:57782328-57782828 8.3e-07 12_[+2]_66 chr1:234723865-234724365 1.1e-06 34_[+2]_44 chr6:28212811-28213311 1.9e-06 6_[+2]_72 chr12:124921523-12492202 2.2e-06 6_[-2]_72 chr19:40715313-40715813 2.2e-06 10_[-2]_68 chr19:37218050-37218550 2.8e-06 72_[+2]_6 chr12:57726149-57726649 3e-06 30_[+2]_48 chr8:33513404-33513904 3e-06 [+2]_78 chr19:38224172-38224672 3e-06 51_[-2]_27 chr3:198173149-198173649 4.6e-06 26_[+2]_52 chr2:240613431-240613931 5.6e-06 51_[-2]_27 chr5:148825895-148826395 6.4e-06 57_[+2]_21 chr17:1293396-1293896 6.8e-06 77_[+2]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTKTKTGTGTKTKTGKKWGWG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TRTKTKTGTGTKTKTGKKWGWG width=22 seqs=46 chr20:52972210-52972710 ( 16) TGTGTGTGTGTTTGTGTGTGTG 1 chr19:35947329-35947829 ( 70) TGTGTGTGTGTGTGTGTGTGTG 1 chr10:101830477-10183097 ( 7) TGTGTGTGTGTGTGTGTGTGTG 1 chr12:57111950-57112450 ( 2) TGTGTGTGTGTGTGTGTGTGTG 1 chr19:53979834-53980334 ( 25) TGTGTGTGTGTGTGTGTGTGTG 1 chr5:93582517-93583017 ( 60) TGTGTGTGTATGTGTGTGTGTG 1 chr1:32109110-32109610 ( 27) TTTTTGTGTGTTTTTGGTAGAG 1 chr2:55519011-55519511 ( 61) AATTTTTGTATTTTTGGTAGAG 1 chr1:1207724-1208224 ( 18) TTTTTTTGTATTTTTAGTAGAG 1 chr19:44259452-44259952 ( 12) AATTTTTGTATTTTTAGTAGAG 1 chr19:39033095-39033595 ( 9) AATTTTTGTATTTTTAGTAGAG 1 chr8:28447541-28448041 ( 44) AATTTTTGTATTTTTAGTAGAG 1 chr15:70097572-70098072 ( 29) TTTTTTGGTGTGTGTGTGTGTG 1 chr1:156660167-156660667 ( 22) TGTGTGTGTGTGTGTGTGTACG 1 chr19:36916364-36916864 ( 76) TGGGTGTGTGGTTGTGTGTGTG 1 chr19:6532213-6532713 ( 55) TGTTCGTGTGTGTCTGTGTGTG 1 chr22:37848884-37849384 ( 67) TAATTTTGTATTTTTAGTAGAG 1 chr12:124922465-12492296 ( 39) AATTTCTGTATTTTTAGTAGAG 1 chr19:17225565-17226065 ( 65) GTTGTTTGTATTTTTAGTAGAG 1 chr2:241881314-241881814 ( 78) AGCGTGTGTGTGTGTGTGTGTG 1 chr19:36572884-36573384 ( 9) TTGTGGTGTGTGTGTGTGAGAG 1 chr19:36604758-36605258 ( 13) TGTGTGATTGTGTTTGTGTGTG 1 chr1:65264438-65264938 ( 43) TGTTTTGGAATTTGTGTTTACG 1 chr10:69318965-69319465 ( 26) TGTGTGTGCGTTTTTGGGAGGG 1 chr19:39341539-39342039 ( 23) TGTTGCTGTGACTTTGGTTGTG 1 chr1:148522534-148523034 ( 68) TGTTTTTGTAATTCAGGGTGCG 1 chr19:36686874-36687374 ( 33) TAGGTCTGTGGTGTTGTGTGTG 1 chr19:49818148-49818648 ( 47) GGTGTTTGTGATTGAGGGTACG 1 chr17:43170838-43171338 ( 8) AATGTTTGTTATTGTTGTTCGG 1 chr7:66920791-66921291 ( 23) TGGTGTTGTGCGTGTGCGTGTG 1 chr5:1950664-1951164 ( 4) TGTGTATGTGTCATCTGTTGTG 1 chr1:146035586-146036086 ( 75) TATTTGTGTTTTTCTACATTTT 1 chr19:36488961-36489461 ( 24) TGGTTGAGTGTTACTGCGTTTG 1 chr12:57782328-57782828 ( 13) ATTTCTTGTGTTGTTGTTTTGT 1 chr1:234723865-234724365 ( 35) TGTGTGTGTGAGAGAGAGAGAG 1 chr6:28212811-28213311 ( 7) AGTTGTTGATTCTTTGTGTGAC 1 chr12:124921523-12492202 ( 7) TAGTTTTGTTGCTTTCTGTATT 1 chr19:40715313-40715813 ( 11) AATGTGGGTGTTTGTGCAAAGT 1 chr19:37218050-37218550 ( 73) TGGGCATGTATGAGTGTGTCGG 1 chr12:57726149-57726649 ( 31) TGAGTTTGTGTCTTCTGGAAGG 1 chr8:33513404-33513904 ( 1) TGTATTTGTGGGCTTGTTACTT 1 chr19:38224172-38224672 ( 52) TGTGCATGTGGTTGTGTGCACG 1 chr3:198173149-198173649 ( 27) GGGTTTAGTGTTAGGGTTTAGG 1 chr2:240613431-240613931 ( 52) TAGGGTGGAGTTAGTGTTATGG 1 chr5:148825895-148826395 ( 58) TATGGCTGTGGTTCGGTATAAG 1 chr17:1293396-1293896 ( 78) ATGAGTTGAGTTTGATGTTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTKTKTGTGTKTKTGKKWGWG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 11.0725 E= 4.2e-076 35 -1217 -226 189 59 -1217 86 -30 -211 -384 -52 193 -211 -1217 68 128 -1217 -184 -104 202 -153 -184 33 128 -153 -1217 -184 217 -1217 -1217 165 -311 -111 -384 -1217 225 47 -1217 106 -111 -79 -384 -126 198 -1217 -152 6 159 -53 -384 -284 210 -1217 -152 62 114 -111 -284 -284 214 -11 -384 120 -111 -311 -184 24 147 -153 -1217 80 106 89 -384 -1217 175 6 -226 106 -111 59 -152 -84 121 -1217 -384 148 -79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTKTKTGTGTKTKTGKKWGWG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 46 E= 4.2e-076 0.239130 0.000000 0.065217 0.695652 0.282609 0.000000 0.565217 0.152174 0.043478 0.021739 0.217391 0.717391 0.043478 0.000000 0.500000 0.456522 0.000000 0.086957 0.152174 0.760870 0.065217 0.086957 0.391304 0.456522 0.065217 0.000000 0.086957 0.847826 0.000000 0.000000 0.978261 0.021739 0.086957 0.021739 0.000000 0.891304 0.260870 0.000000 0.652174 0.086957 0.108696 0.021739 0.130435 0.739130 0.000000 0.108696 0.326087 0.565217 0.130435 0.021739 0.043478 0.804348 0.000000 0.108696 0.478261 0.413043 0.086957 0.043478 0.043478 0.826087 0.173913 0.021739 0.717391 0.086957 0.021739 0.086957 0.369565 0.521739 0.065217 0.000000 0.543478 0.391304 0.347826 0.021739 0.000000 0.630435 0.195652 0.065217 0.652174 0.086957 0.282609 0.108696 0.173913 0.434783 0.000000 0.021739 0.869565 0.108696 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTKTKTGTGTKTKTGKKWGWG MEME-2 regular expression -------------------------------------------------------------------------------- [TA][GA][TG][GT]T[TG]TGT[GA]T[TG]T[GT]TG[TG][GT][TA]G[TA]G -------------------------------------------------------------------------------- Time 691.76 secs. ******************************************************************************** ******************************************************************************** MOTIF CYYCYBYCTCCBCCTC MEME-3 width = 16 sites = 125 llr = 1166 E-value = 2.3e-046 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYYCYBYCTCCBCCTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::1::1:2:1:1: pos.-specific C 6559626839646a:9 probability G 11:::4:1:1:31:1: matrix T 235:43316:132:81 bits 2.4 2.2 1.9 1.7 Relative 1.4 *** Entropy 1.2 * * *** (13.5 bits) 1.0 *** *** *** 0.7 *** *** *** 0.5 ***** ***** *** 0.2 **************** 0.0 ---------------- Multilevel CCCCCGCCTCCCCCTC consensus TTT TTT C AT sequence C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYYCYBYCTCCBCCTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr14:103520914-10352141 + 35 5.31e-09 GCCcctccct cctcctcctcctcctc ctcGCCGCGA chr17:45148354-45148854 - 22 1.02e-08 GCTCAGTTCT CCTCCGCCTCCTCCTC TTTTCCTCCC chr1:25998106-25998606 + 79 1.55e-07 CGTGCGTAAC CCTCCGCCTCACCCTC CTCAAA chr16:234311-234811 - 41 1.55e-07 GCGTCCTCGC TCCCCTCCTCCTCCTC TCCCGACCTT chr12:26111114-26111614 - 52 2.27e-07 CAAGCAATTC CTCCTGCCTCAGCCTC CCGAGTAGCT chr22:37848884-37849384 + 10 2.27e-07 caagcgact ctcctgcctcagcctc ccgagtagct chr10:124093739-12409423 + 30 2.27e-07 tcaagagagt ctcctgcctcagcctc ccgagtagcc chr1:1207724-1208224 - 85 2.27e-07 . CTCCTGCCTCAGCCTC CCGAGTAGCT chr2:55519011-55519511 + 4 2.27e-07 att ctcctgcctcagcctc ccgagtacct chr1:146035807-146036307 + 78 2.27e-07 tcaagcgatt ctcctgcctcagcctc ccaagta chr17:47649679-47650179 + 83 4.05e-07 cccttccttc tttctccctccGCCTC CC chr1:28642701-28643201 + 43 8.47e-07 TGGGTCCTGA CTCCCTCCTCCCGCTC TTGTTCCTCA chr16:29973696-29974196 - 40 8.47e-07 CCTCTCCTCT TCTCCGTCTCAGCCTC TCTCCGCACC chr1:234723865-234724365 - 72 1.39e-06 CCCTCCTCCC TTCCTCCCTCCCTCTC CCTCCATTTC chr19:33080892-33081392 - 28 1.88e-06 AAACGCCTTT CCTCTTTCTCCTCCGC GAACCCCGGT chr19:50658336-50658836 - 46 1.88e-06 ATGTGCTCAG TCTCTTCCACCCCCTC ACAGCTGCCT chr16:54286317-54286817 + 50 2.16e-06 Actctccttt ctcctctccccttctc tttccctttc chr19:35947329-35947829 - 44 2.49e-06 CGAACAGTGC CCTCTGGCTCCCCCTC ATGGGAGCAA chr19:38228485-38228985 - 19 2.49e-06 GCTCTCCACA CCTCCCCTTCCCCCTC TCCATCTCGC chr15:72230423-72230923 - 60 2.49e-06 AAGTCTGGTC CTTCCACCCCCTCCTC TTCAAGCTGT chr5:41904224-41904724 - 58 2.86e-06 CCGTCTGCCC CGCCCGCCTCCCTCTC CTCCGCTCCC chr17:82586110-82586610 - 4 3.26e-06 TCCCTGTGGT CTCCCCTCTCCTCCTT TCC chr8:23246522-23247022 - 40 3.26e-06 ATGCGCTCCT CGTCCTCCTCCCACTC GGGGGGCAGA chr4:102827299-102827799 + 73 3.75e-06 GCCACGCTCC GCCCCTCCCCCTCCTC CTGCCTCTTC chrX:13653119-13653619 + 3 3.75e-06 CA CCCCCGCCCCTTCCTC TCCGACTGTC chr5:141969030-141969530 - 34 3.75e-06 CCCAGCCCGG TCCCCTTCTCTGCCTC GCGCGCCCAG chr17:48728685-48729185 + 23 3.75e-06 tctctctctg tctctgtctctctctc tcgctctctc chr1:155244556-155245056 - 24 4.28e-06 TCTCGCTCTC TCTCTCTCTCCGGCTC GCCAGCGACA chr1:26695406-26695906 + 1 4.28e-06 . GTTCTCTCCCCTCCTC CTTTGTGAAG chr1:27914160-27914660 + 39 4.28e-06 CTCCTGCGAT TCTCTTCCTCCTCCAC CCCGCACCCC chr19:35154739-35155239 + 38 5.57e-06 CGCTCCCGCC CGCCTGCCTCAGTCTC CCCAGCTCTC chr11:112961075-11296157 + 44 5.57e-06 GAGGTTCTCA CCCCCGCCCCCCGCTC CTCGCTCCCA chr12:121888724-12188922 - 20 5.57e-06 TTGATCTGCG CTTCTATCTCCTCCTT GCGCCGCATC chr12:120528706-12052920 + 40 5.57e-06 TCACCTTTGC CCCCCTTCTCCTCTTC CGACACAGTC chr22:46013673-46014173 + 73 6.30e-06 CCCCTCCACA TTCCCGCCTGCTCCTC CGGGCCTGCC chr21:28992677-28993177 + 78 6.30e-06 TGCTGCCCCA CTTCCGCTCCCGCCTC CCGCTGT chr19:46347192-46347692 - 46 6.30e-06 CAATTGGTGG CGCCCTCCTCAGTCTC TCCACTGAGT chr10:98446802-98447302 - 66 6.30e-06 CAAGTTATTT CTTCTCTCTGCGCCTC CGTTTCCTCT chr21:25607261-25607761 + 45 7.14e-06 CGCGCAAGTC CTTCTCCGCCCTCCTC CCCCGGAAAC chr17:38730420-38730920 + 23 7.14e-06 cgccccttca gccctgtcacctcctc cttcctAGAT chr21:39313558-39314058 - 77 8.06e-06 CACGCGCC CTCCCCTCCCCCACTC GCTGCTGCGG chr5:37371060-37371560 - 28 8.06e-06 TATCCTTCCC TTCCTTTCCCTCCCTC CCTTCCCTAA chr4:41256564-41257064 + 63 8.06e-06 TGGCCGCGAC CGTCCGTTTCCCCCTC GCTTGGTTCT chr17:32007073-32007573 + 17 8.06e-06 CGCCCCGAGC TCTCCGCCCCCGACTC AATGCTCCCG chr11:47578754-47579254 + 12 9.04e-06 GAGCCCGGAA CCTCCGCTTCCGGCTC CACGTCCGCC chr17:68511905-68512405 - 54 9.04e-06 GCCCGGTTCT CTCCTCCTTCCTGCTC ACCTGCCCCT chr13:40770995-40771495 + 33 9.04e-06 TCCGGCCTGG CGCCTTCCTCCCCCTT TGCGCTCCGG chr12:56158186-56158686 - 58 1.02e-05 CCCCCACCCG TCTCTTCCTGCCTCTC GTCCCCAATC chr17:45132864-45133364 - 19 1.02e-05 TCCAGGCTCG GCTCCGCCTCACGCTC CCCAGGTCCG chr17:42388475-42388975 + 51 1.02e-05 CAGTTCGGTG CTCCTCCCTCCGCCAC AGCGAGGGAA chr16:30378339-30378839 + 70 1.02e-05 TGCGTGCTCA CCTCTTCGTCTTTCTC GCGGATCAGC chr1:25858863-25859363 + 17 1.02e-05 TCTTTCCTTC CGTCCCTCCCATCCTC CCCAAGCCCC chr6:30647209-30647709 - 58 1.02e-05 GGCCCGGCAG CGCCTCCCTCCCGCTC CCGCGACCCC chr12:8949701-8950201 - 71 1.14e-05 TTCCGCCACC TGCCCCTCTCACCCTC TTCACTCGAA chr6:26341760-26342260 - 32 1.14e-05 CCACAAGTCC TCCTCGTCTCCTCCTC GTTCCCTCAC chr19:49118639-49119139 - 63 1.14e-05 TCATTCTGCA CCCCTGCGCCCGCCTC GGGAACTGCA chr5:69217729-69218229 - 18 1.27e-05 CACCGCTCTG CCTCTGCCACCGCCTT TACTCCCCGA chr19:45468913-45469413 + 85 1.27e-05 AGCCGCGCTG CCTCCGCCTCCTGCGC chr14:21455675-21456175 - 42 1.27e-05 TCTCCTCTCT CTTCCACCCCCTGCTC GCCCCCCAGT chr19:39390701-39391201 - 8 1.42e-05 TCGGCACGCC CCTCTGCGTCCCCCTT CGGTCCC chr11:57741112-57741612 + 13 1.42e-05 ATCCCAGCGT CCCCTGTCCCCTCCAC CCGAAGCGAT chr15:101724055-10172455 + 72 1.42e-05 CAGCGGATGT CCTCCTCCTGCCGCTC CAGGCGCGAC chr4:140154060-140154560 + 62 1.42e-05 cagcacccgg ctcccgtctccgtcgc ctcggcgccc chr19:41706673-41707173 + 69 1.58e-05 CCTCGGCCCA CGTcctcctcgccctc cgagctcctc chr12:8243474-8243974 - 50 1.77e-05 ACACCCTGGA CCCCTCGCTCCGTCTC GGCCCCGCCC chr6:28080739-28081239 + 63 1.77e-05 CAGATGTCCA GCCCCGTGTCCCCCTC CAAACATCCA chr4:9691429-9691929 + 38 1.77e-05 ACACCCTGGA CCCCTCGCTCCGTCTC Ggccccgccc chr19:37778992-37779492 + 85 1.77e-05 ACACGCAGTT TCTCTGTCACACACTC chr17:59209691-59210191 - 33 1.77e-05 CGTCACTTGA GTTCCGCCTCCTCTTC TCCTCTCCTA chr17:30708084-30708584 + 77 2.19e-05 CGAGTCCAGC CCTCCTTTTGCCCCTC CCCCTTGC chr5:141618917-141619417 - 18 2.19e-05 GCTTCCGCGG CTTCCCTCCGCCCCTC TCCCTTCCCC chr6:98845645-98846145 + 19 2.19e-05 cccttccctc cttcctCCCCGCTCTC TTCCCTCAGT chr6:53359413-53359913 - 31 2.43e-05 TAGCTCAGCG CCTCCTCCACCCCCAC CCGATGTCCC chr10:133394184-13339468 + 83 2.43e-05 CTTGTCTCCC CTCCTTCCCCGCTCTC AC chr2:229921920-229922420 + 34 2.69e-05 CATCACATCG CCCCTCCCTCCCACGC CTCCCGGCTC chr19:58519533-58520033 + 8 2.97e-05 GACCCCA CCTCCGACTCCTCTTC AGGCACCAGG chr1:40257868-40258368 - 63 2.97e-05 CCGATACCCG CCCCCATCCCTCCCTC TGCGCGCTGC chr19:39515166-39515666 + 27 2.97e-05 TTCCCCTCTG GTCCTGACTCCTGCTC CAGCCCAGAT chr15:68278536-68279036 + 3 2.97e-05 AC CCTCTCTTACCCTCTC TTCATGTAGG chr20:49046180-49046680 + 14 2.97e-05 GCGGCTGGGG TTCCCTCCTCCGTTTC TGTATCCCCA chr19:6516639-6517139 + 72 2.97e-05 cctcccatct ccccttcccgcgtctc cacgctctTT chr5:112420070-112420570 - 50 3.28e-05 GCGTCCTCTT CTCCCCACCCAGCCTC CAGGTCTCTC chr14:24146704-24147204 - 17 3.61e-05 CACTGAATAC CCCCTTTGCCATACTC CCACCTCTCT chr17:40287736-40288236 - 62 3.61e-05 AGCAATCCTC TTCTTTCCACCTCCTC AGTGCAGGAT chr19:43575261-43575761 - 61 3.97e-05 GGCGCACCCC GCCCCCTCCCACTCTC CCTGCCCCTC chr12:95217713-95218213 - 17 3.97e-05 GCTTCCTCGA TTTCCGTCTCGTCCTT CTCAAACAAA chr17:74872610-74873110 + 42 4.36e-05 GCCCCAAAGG CGCCCTGCTCCTACTC GGGGTGCTCC chr20:63657983-63658483 - 6 4.36e-05 CGTTTTGCGC GTTCTGTGTCCGGCTC CGCTG chr19:29606034-29606534 - 81 4.36e-05 CCCG CTTACTCTTCATTCTC GGACCGCTTC chr19:39033095-39033595 - 73 4.36e-05 TCAAGCAATT CTCCTGCCTAAGCCTC CAAATTAGCT chr15:66356256-66356756 + 2 4.36e-05 G CCCACCTCCCCGCCTC TCCAGGCCGG chr5:65925741-65926241 + 34 4.78e-05 CTGCCTCCTG CTCCCGCCCCCTGCGC GTCTCGGGGA chr7:102572211-102572711 + 56 4.78e-05 GCCGGCGTCA CTTACTTCTCGCCCTC GAAGAGCAAG chr1:40691546-40692046 + 28 4.78e-05 GACGCACACT TCCCCCTCCCCTCCGC CGCGCCTGGG chr14:66508085-66508585 + 27 4.78e-05 CGCGCCCTGA CTCCTTCCCCTCCCGC GGACCCGCGC chr19:58572950-58573450 + 19 5.24e-05 CGCCTccttg cccttcccccaccctc gtccccgttt chr22:40370424-40370924 - 67 5.24e-05 TCTCCGCTGA CTCCCGCCCCGCACTC ACCTGCCCCA chr6:85642959-85643459 + 76 5.73e-05 tggctcgcac gctccctcactccctc cctcgctcg chr14:32076366-32076866 - 8 5.73e-05 TTCTGCTCCT CCTCAGTCCCATCCTC CACGCTT chr19:10332879-10333379 + 46 5.73e-05 CATCATCGCC CCCCCACGTCCCGCTC TTGGTCTCTC chr21:46635672-46636172 + 71 5.73e-05 GGGAGCTCGG TCCCCGTCACACCCTT CCCTGCGTGC chr19:40420972-40421472 + 40 6.26e-05 ACCGTCCAGC CCCCTGCGCCTCTCTC CATGCGCACC chr12:106357554-10635805 - 78 6.26e-05 GATAGAA CCTCCGCGCCCGCCTT CCCTGCACCA chr11:73142267-73142767 - 64 6.26e-05 CGTTAGCTTC CCCCTTCCCCTGCCGC GGTACGAAGC chr6:16759815-16760315 + 24 6.26e-05 ctcacGCCGC GCTCCGACACCGCCTC ACCTCTCGCT chr1:997934-998434 - 84 6.84e-05 G CTCCTCCCTCATCGTC CCGAGCACGT chr9:137188288-137188788 + 11 6.84e-05 CGGGAGTCGC TGTCCCCCTCCGCCAC CACAACTGCC chr12:52023472-52023972 + 22 6.84e-05 gcccagcccc tcccctgctgctcctc ctcctgcccc chr15:89334685-89335185 - 28 6.84e-05 CCCAGAAGTC CCCCTTCTCCCCCCGC GGGCGGACCG chr2:231464079-231464579 - 85 6.84e-05 . TGTCCGCTTCACACTC CGCCGCCATC chr12:69585371-69585871 + 43 7.46e-05 AGGGTCGTAG GCTCCGTTTCTGTCTC CCCGGCCCTC chr15:84981140-84981640 - 46 7.46e-05 TGGCGGTACG GCTCCGGCTCCGGCTC CGTGATCCGG chr19:58327013-58327513 - 26 7.46e-05 TCTACTCACG TCCCCTAGTCAGCCTC TCACTCTCTA chr5:10307487-10307987 - 18 7.46e-05 TCGGTCGCCG CGTCCACGTCCCTCTC GCGTCCCCGC chr1:925447-925947 - 9 8.13e-05 CCCACCCGGC GCCCCTCCTCCCGCGC TCCACCCT chr20:58650953-58651453 - 46 8.85e-05 CCTGGCCCTC TTCCTGTCCGTCCCTC GCGAGTGCCC chr19:11155418-11155918 + 41 8.85e-05 TCCAGCAGCC GCTCCACCACCTGCTC GTGGCGCCCC chr8:37849636-37850136 - 71 8.85e-05 GAGGGAACCG CCTATGCCTCCGTCGC GCTGGCCGGA chr5:150700666-150701166 + 23 9.61e-05 AAGGTGCGCG GCTTCGCCTCCTCCTT CCATCCTCCT chr6:159761935-159762435 - 81 9.61e-05 CATA CGCCCCTCTCCTACAC AAGTCCGGCC chr10:97446041-97446541 - 34 9.61e-05 CCGCTCACTG CCACCCCCTCCGACTC GGCGCCCCGG chr19:36215000-36215500 - 83 1.04e-04 AA GCTCTTACACCCACTC CCTGCCCTCG chr10:101830477-10183097 + 54 1.13e-04 CTGGGGCACG CCCCTCCCCCACACGC AGGCGTGCGG chr12:53252027-53252527 - 69 1.23e-04 CCCCTGCCCA GCCCTGCCACATCCAC TTGCACCTCG chr16:10743680-10744180 - 11 1.33e-04 CGCCCCGCGA CCCACGCCCCCTCCGC GAGCTTACCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYYCYBYCTCCBCCTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:103520914-10352141 5.3e-09 34_[+3]_50 chr17:45148354-45148854 1e-08 21_[-3]_63 chr1:25998106-25998606 1.5e-07 78_[+3]_6 chr16:234311-234811 1.5e-07 40_[-3]_44 chr12:26111114-26111614 2.3e-07 51_[-3]_33 chr22:37848884-37849384 2.3e-07 9_[+3]_75 chr10:124093739-12409423 2.3e-07 29_[+3]_55 chr1:1207724-1208224 2.3e-07 84_[-3] chr2:55519011-55519511 2.3e-07 3_[+3]_81 chr1:146035807-146036307 2.3e-07 77_[+3]_7 chr17:47649679-47650179 4.1e-07 82_[+3]_2 chr1:28642701-28643201 8.5e-07 42_[+3]_42 chr16:29973696-29974196 8.5e-07 39_[-3]_45 chr1:234723865-234724365 1.4e-06 71_[-3]_13 chr19:33080892-33081392 1.9e-06 27_[-3]_57 chr19:50658336-50658836 1.9e-06 45_[-3]_39 chr16:54286317-54286817 2.2e-06 49_[+3]_35 chr19:35947329-35947829 2.5e-06 43_[-3]_41 chr19:38228485-38228985 2.5e-06 18_[-3]_66 chr15:72230423-72230923 2.5e-06 59_[-3]_25 chr5:41904224-41904724 2.9e-06 57_[-3]_27 chr17:82586110-82586610 3.3e-06 3_[-3]_81 chr8:23246522-23247022 3.3e-06 39_[-3]_45 chr4:102827299-102827799 3.8e-06 72_[+3]_12 chrX:13653119-13653619 3.8e-06 2_[+3]_82 chr5:141969030-141969530 3.8e-06 33_[-3]_51 chr17:48728685-48729185 3.8e-06 22_[+3]_62 chr1:155244556-155245056 4.3e-06 23_[-3]_61 chr1:26695406-26695906 4.3e-06 [+3]_84 chr1:27914160-27914660 4.3e-06 38_[+3]_46 chr19:35154739-35155239 5.6e-06 37_[+3]_47 chr11:112961075-11296157 5.6e-06 43_[+3]_41 chr12:121888724-12188922 5.6e-06 19_[-3]_65 chr12:120528706-12052920 5.6e-06 39_[+3]_45 chr22:46013673-46014173 6.3e-06 72_[+3]_12 chr21:28992677-28993177 6.3e-06 77_[+3]_7 chr19:46347192-46347692 6.3e-06 45_[-3]_39 chr10:98446802-98447302 6.3e-06 65_[-3]_19 chr21:25607261-25607761 7.1e-06 44_[+3]_40 chr17:38730420-38730920 7.1e-06 22_[+3]_62 chr21:39313558-39314058 8.1e-06 76_[-3]_8 chr5:37371060-37371560 8.1e-06 27_[-3]_57 chr4:41256564-41257064 8.1e-06 62_[+3]_22 chr17:32007073-32007573 8.1e-06 16_[+3]_68 chr11:47578754-47579254 9e-06 11_[+3]_73 chr17:68511905-68512405 9e-06 53_[-3]_31 chr13:40770995-40771495 9e-06 32_[+3]_52 chr12:56158186-56158686 1e-05 57_[-3]_27 chr17:45132864-45133364 1e-05 18_[-3]_66 chr17:42388475-42388975 1e-05 50_[+3]_34 chr16:30378339-30378839 1e-05 69_[+3]_15 chr1:25858863-25859363 1e-05 16_[+3]_68 chr6:30647209-30647709 1e-05 57_[-3]_27 chr12:8949701-8950201 1.1e-05 70_[-3]_14 chr6:26341760-26342260 1.1e-05 31_[-3]_53 chr19:49118639-49119139 1.1e-05 62_[-3]_22 chr5:69217729-69218229 1.3e-05 17_[-3]_67 chr19:45468913-45469413 1.3e-05 84_[+3] chr14:21455675-21456175 1.3e-05 41_[-3]_43 chr19:39390701-39391201 1.4e-05 7_[-3]_77 chr11:57741112-57741612 1.4e-05 12_[+3]_72 chr15:101724055-10172455 1.4e-05 71_[+3]_13 chr4:140154060-140154560 1.4e-05 61_[+3]_23 chr19:41706673-41707173 1.6e-05 68_[+3]_16 chr12:8243474-8243974 1.8e-05 49_[-3]_35 chr6:28080739-28081239 1.8e-05 62_[+3]_22 chr4:9691429-9691929 1.8e-05 37_[+3]_47 chr19:37778992-37779492 1.8e-05 84_[+3] chr17:59209691-59210191 1.8e-05 32_[-3]_52 chr17:30708084-30708584 2.2e-05 76_[+3]_8 chr5:141618917-141619417 2.2e-05 17_[-3]_67 chr6:98845645-98846145 2.2e-05 18_[+3]_66 chr6:53359413-53359913 2.4e-05 30_[-3]_54 chr10:133394184-13339468 2.4e-05 82_[+3]_2 chr2:229921920-229922420 2.7e-05 33_[+3]_51 chr19:58519533-58520033 3e-05 7_[+3]_77 chr1:40257868-40258368 3e-05 62_[-3]_22 chr19:39515166-39515666 3e-05 26_[+3]_58 chr15:68278536-68279036 3e-05 2_[+3]_82 chr20:49046180-49046680 3e-05 13_[+3]_71 chr19:6516639-6517139 3e-05 71_[+3]_13 chr5:112420070-112420570 3.3e-05 49_[-3]_35 chr14:24146704-24147204 3.6e-05 16_[-3]_68 chr17:40287736-40288236 3.6e-05 61_[-3]_23 chr19:43575261-43575761 4e-05 60_[-3]_24 chr12:95217713-95218213 4e-05 16_[-3]_68 chr17:74872610-74873110 4.4e-05 41_[+3]_43 chr20:63657983-63658483 4.4e-05 5_[-3]_79 chr19:29606034-29606534 4.4e-05 80_[-3]_4 chr19:39033095-39033595 4.4e-05 72_[-3]_12 chr15:66356256-66356756 4.4e-05 1_[+3]_83 chr5:65925741-65926241 4.8e-05 33_[+3]_51 chr7:102572211-102572711 4.8e-05 55_[+3]_29 chr1:40691546-40692046 4.8e-05 27_[+3]_57 chr14:66508085-66508585 4.8e-05 26_[+3]_58 chr19:58572950-58573450 5.2e-05 18_[+3]_66 chr22:40370424-40370924 5.2e-05 66_[-3]_18 chr6:85642959-85643459 5.7e-05 75_[+3]_9 chr14:32076366-32076866 5.7e-05 7_[-3]_77 chr19:10332879-10333379 5.7e-05 45_[+3]_39 chr21:46635672-46636172 5.7e-05 70_[+3]_14 chr19:40420972-40421472 6.3e-05 39_[+3]_45 chr12:106357554-10635805 6.3e-05 77_[-3]_7 chr11:73142267-73142767 6.3e-05 63_[-3]_21 chr6:16759815-16760315 6.3e-05 23_[+3]_61 chr1:997934-998434 6.8e-05 83_[-3]_1 chr9:137188288-137188788 6.8e-05 10_[+3]_74 chr12:52023472-52023972 6.8e-05 21_[+3]_63 chr15:89334685-89335185 6.8e-05 27_[-3]_57 chr2:231464079-231464579 6.8e-05 84_[-3] chr12:69585371-69585871 7.5e-05 42_[+3]_42 chr15:84981140-84981640 7.5e-05 45_[-3]_39 chr19:58327013-58327513 7.5e-05 25_[-3]_59 chr5:10307487-10307987 7.5e-05 17_[-3]_67 chr1:925447-925947 8.1e-05 8_[-3]_76 chr20:58650953-58651453 8.8e-05 45_[-3]_39 chr19:11155418-11155918 8.8e-05 40_[+3]_44 chr8:37849636-37850136 8.8e-05 70_[-3]_14 chr5:150700666-150701166 9.6e-05 22_[+3]_62 chr6:159761935-159762435 9.6e-05 80_[-3]_4 chr10:97446041-97446541 9.6e-05 33_[-3]_51 chr19:36215000-36215500 0.0001 82_[-3]_2 chr10:101830477-10183097 0.00011 53_[+3]_31 chr12:53252027-53252527 0.00012 68_[-3]_16 chr16:10743680-10744180 0.00013 10_[-3]_74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYYCYBYCTCCBCCTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYYCYBYCTCCBCCTC width=16 seqs=125 chr14:103520914-10352141 ( 35) CCTCCTCCTCCTCCTC 1 chr17:45148354-45148854 ( 22) CCTCCGCCTCCTCCTC 1 chr1:25998106-25998606 ( 79) CCTCCGCCTCACCCTC 1 chr16:234311-234811 ( 41) TCCCCTCCTCCTCCTC 1 chr12:26111114-26111614 ( 52) CTCCTGCCTCAGCCTC 1 chr22:37848884-37849384 ( 10) CTCCTGCCTCAGCCTC 1 chr10:124093739-12409423 ( 30) CTCCTGCCTCAGCCTC 1 chr1:1207724-1208224 ( 85) CTCCTGCCTCAGCCTC 1 chr2:55519011-55519511 ( 4) CTCCTGCCTCAGCCTC 1 chr1:146035807-146036307 ( 78) CTCCTGCCTCAGCCTC 1 chr17:47649679-47650179 ( 83) TTTCTCCCTCCGCCTC 1 chr1:28642701-28643201 ( 43) CTCCCTCCTCCCGCTC 1 chr16:29973696-29974196 ( 40) TCTCCGTCTCAGCCTC 1 chr1:234723865-234724365 ( 72) TTCCTCCCTCCCTCTC 1 chr19:33080892-33081392 ( 28) CCTCTTTCTCCTCCGC 1 chr19:50658336-50658836 ( 46) TCTCTTCCACCCCCTC 1 chr16:54286317-54286817 ( 50) CTCCTCTCCCCTTCTC 1 chr19:35947329-35947829 ( 44) CCTCTGGCTCCCCCTC 1 chr19:38228485-38228985 ( 19) CCTCCCCTTCCCCCTC 1 chr15:72230423-72230923 ( 60) CTTCCACCCCCTCCTC 1 chr5:41904224-41904724 ( 58) CGCCCGCCTCCCTCTC 1 chr17:82586110-82586610 ( 4) CTCCCCTCTCCTCCTT 1 chr8:23246522-23247022 ( 40) CGTCCTCCTCCCACTC 1 chr4:102827299-102827799 ( 73) GCCCCTCCCCCTCCTC 1 chrX:13653119-13653619 ( 3) CCCCCGCCCCTTCCTC 1 chr5:141969030-141969530 ( 34) TCCCCTTCTCTGCCTC 1 chr17:48728685-48729185 ( 23) TCTCTGTCTCTCTCTC 1 chr1:155244556-155245056 ( 24) TCTCTCTCTCCGGCTC 1 chr1:26695406-26695906 ( 1) GTTCTCTCCCCTCCTC 1 chr1:27914160-27914660 ( 39) TCTCTTCCTCCTCCAC 1 chr19:35154739-35155239 ( 38) CGCCTGCCTCAGTCTC 1 chr11:112961075-11296157 ( 44) CCCCCGCCCCCCGCTC 1 chr12:121888724-12188922 ( 20) CTTCTATCTCCTCCTT 1 chr12:120528706-12052920 ( 40) CCCCCTTCTCCTCTTC 1 chr22:46013673-46014173 ( 73) TTCCCGCCTGCTCCTC 1 chr21:28992677-28993177 ( 78) CTTCCGCTCCCGCCTC 1 chr19:46347192-46347692 ( 46) CGCCCTCCTCAGTCTC 1 chr10:98446802-98447302 ( 66) CTTCTCTCTGCGCCTC 1 chr21:25607261-25607761 ( 45) CTTCTCCGCCCTCCTC 1 chr17:38730420-38730920 ( 23) GCCCTGTCACCTCCTC 1 chr21:39313558-39314058 ( 77) CTCCCCTCCCCCACTC 1 chr5:37371060-37371560 ( 28) TTCCTTTCCCTCCCTC 1 chr4:41256564-41257064 ( 63) CGTCCGTTTCCCCCTC 1 chr17:32007073-32007573 ( 17) TCTCCGCCCCCGACTC 1 chr11:47578754-47579254 ( 12) CCTCCGCTTCCGGCTC 1 chr17:68511905-68512405 ( 54) CTCCTCCTTCCTGCTC 1 chr13:40770995-40771495 ( 33) CGCCTTCCTCCCCCTT 1 chr12:56158186-56158686 ( 58) TCTCTTCCTGCCTCTC 1 chr17:45132864-45133364 ( 19) GCTCCGCCTCACGCTC 1 chr17:42388475-42388975 ( 51) CTCCTCCCTCCGCCAC 1 chr16:30378339-30378839 ( 70) CCTCTTCGTCTTTCTC 1 chr1:25858863-25859363 ( 17) CGTCCCTCCCATCCTC 1 chr6:30647209-30647709 ( 58) CGCCTCCCTCCCGCTC 1 chr12:8949701-8950201 ( 71) TGCCCCTCTCACCCTC 1 chr6:26341760-26342260 ( 32) TCCTCGTCTCCTCCTC 1 chr19:49118639-49119139 ( 63) CCCCTGCGCCCGCCTC 1 chr5:69217729-69218229 ( 18) CCTCTGCCACCGCCTT 1 chr19:45468913-45469413 ( 85) CCTCCGCCTCCTGCGC 1 chr14:21455675-21456175 ( 42) CTTCCACCCCCTGCTC 1 chr19:39390701-39391201 ( 8) CCTCTGCGTCCCCCTT 1 chr11:57741112-57741612 ( 13) CCCCTGTCCCCTCCAC 1 chr15:101724055-10172455 ( 72) CCTCCTCCTGCCGCTC 1 chr4:140154060-140154560 ( 62) CTCCCGTCTCCGTCGC 1 chr19:41706673-41707173 ( 69) CGTCCTCCTCGCCCTC 1 chr12:8243474-8243974 ( 50) CCCCTCGCTCCGTCTC 1 chr6:28080739-28081239 ( 63) GCCCCGTGTCCCCCTC 1 chr4:9691429-9691929 ( 38) CCCCTCGCTCCGTCTC 1 chr19:37778992-37779492 ( 85) TCTCTGTCACACACTC 1 chr17:59209691-59210191 ( 33) GTTCCGCCTCCTCTTC 1 chr17:30708084-30708584 ( 77) CCTCCTTTTGCCCCTC 1 chr5:141618917-141619417 ( 18) CTTCCCTCCGCCCCTC 1 chr6:98845645-98846145 ( 19) CTTCCTCCCCGCTCTC 1 chr6:53359413-53359913 ( 31) CCTCCTCCACCCCCAC 1 chr10:133394184-13339468 ( 83) CTCCTTCCCCGCTCTC 1 chr2:229921920-229922420 ( 34) CCCCTCCCTCCCACGC 1 chr19:58519533-58520033 ( 8) CCTCCGACTCCTCTTC 1 chr1:40257868-40258368 ( 63) CCCCCATCCCTCCCTC 1 chr19:39515166-39515666 ( 27) GTCCTGACTCCTGCTC 1 chr15:68278536-68279036 ( 3) CCTCTCTTACCCTCTC 1 chr20:49046180-49046680 ( 14) TTCCCTCCTCCGTTTC 1 chr19:6516639-6517139 ( 72) CCCCTTCCCGCGTCTC 1 chr5:112420070-112420570 ( 50) CTCCCCACCCAGCCTC 1 chr14:24146704-24147204 ( 17) CCCCTTTGCCATACTC 1 chr17:40287736-40288236 ( 62) TTCTTTCCACCTCCTC 1 chr19:43575261-43575761 ( 61) GCCCCCTCCCACTCTC 1 chr12:95217713-95218213 ( 17) TTTCCGTCTCGTCCTT 1 chr17:74872610-74873110 ( 42) CGCCCTGCTCCTACTC 1 chr20:63657983-63658483 ( 6) GTTCTGTGTCCGGCTC 1 chr19:29606034-29606534 ( 81) CTTACTCTTCATTCTC 1 chr19:39033095-39033595 ( 73) CTCCTGCCTAAGCCTC 1 chr15:66356256-66356756 ( 2) CCCACCTCCCCGCCTC 1 chr5:65925741-65926241 ( 34) CTCCCGCCCCCTGCGC 1 chr7:102572211-102572711 ( 56) CTTACTTCTCGCCCTC 1 chr1:40691546-40692046 ( 28) TCCCCCTCCCCTCCGC 1 chr14:66508085-66508585 ( 27) CTCCTTCCCCTCCCGC 1 chr19:58572950-58573450 ( 19) CCCTTCCCCCACCCTC 1 chr22:40370424-40370924 ( 67) CTCCCGCCCCGCACTC 1 chr6:85642959-85643459 ( 76) GCTCCCTCACTCCCTC 1 chr14:32076366-32076866 ( 8) CCTCAGTCCCATCCTC 1 chr19:10332879-10333379 ( 46) CCCCCACGTCCCGCTC 1 chr21:46635672-46636172 ( 71) TCCCCGTCACACCCTT 1 chr19:40420972-40421472 ( 40) CCCCTGCGCCTCTCTC 1 chr12:106357554-10635805 ( 78) CCTCCGCGCCCGCCTT 1 chr11:73142267-73142767 ( 64) CCCCTTCCCCTGCCGC 1 chr6:16759815-16760315 ( 24) GCTCCGACACCGCCTC 1 chr1:997934-998434 ( 84) CTCCTCCCTCATCGTC 1 chr9:137188288-137188788 ( 11) TGTCCCCCTCCGCCAC 1 chr12:52023472-52023972 ( 22) TCCCCTGCTGCTCCTC 1 chr15:89334685-89335185 ( 28) CCCCTTCTCCCCCCGC 1 chr2:231464079-231464579 ( 85) TGTCCGCTTCACACTC 1 chr12:69585371-69585871 ( 43) GCTCCGTTTCTGTCTC 1 chr15:84981140-84981640 ( 46) GCTCCGGCTCCGGCTC 1 chr19:58327013-58327513 ( 26) TCCCCTAGTCAGCCTC 1 chr5:10307487-10307987 ( 18) CGTCCACGTCCCTCTC 1 chr1:925447-925947 ( 9) GCCCCTCCTCCCGCGC 1 chr20:58650953-58651453 ( 46) TTCCTGTCCGTCCCTC 1 chr19:11155418-11155918 ( 41) GCTCCACCACCTGCTC 1 chr8:37849636-37850136 ( 71) CCTATGCCTCCGTCGC 1 chr5:150700666-150701166 ( 23) GCTTCGCCTCCTCCTT 1 chr6:159761935-159762435 ( 81) CGCCCCTCTCCTACAC 1 chr10:97446041-97446541 ( 34) CCACCCCCTCCGACTC 1 chr19:36215000-36215500 ( 83) GCTCTTACACCCACTC 1 chr10:101830477-10183097 ( 54) CCCCTCCCCCACACGC 1 chr12:53252027-53252527 ( 69) GCCCTGCCACATCCAC 1 chr16:10743680-10744180 ( 11) CCCACGCCCCCTCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYYCYBYCTCCBCCTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 9.97571 E= 2.3e-046 -1361 105 -112 15 -1361 80 -138 84 -455 78 -1361 128 -223 157 -1361 -255 -455 82 -1361 123 -175 -33 41 58 -197 92 -270 73 -1361 139 -170 -109 -85 -8 -1361 167 -455 156 -212 -1361 20 104 -270 -97 -1361 27 -8 80 -85 90 -120 -9 -1361 162 -528 -255 -175 -1361 -159 216 -1361 157 -1361 -138 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYYCYBYCTCCBCCTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 125 E= 2.3e-046 0.000000 0.648000 0.144000 0.208000 0.000000 0.544000 0.120000 0.336000 0.008000 0.536000 0.000000 0.456000 0.040000 0.928000 0.000000 0.032000 0.008000 0.552000 0.000000 0.440000 0.056000 0.248000 0.416000 0.280000 0.048000 0.592000 0.048000 0.312000 0.000000 0.816000 0.096000 0.088000 0.104000 0.296000 0.000000 0.600000 0.008000 0.920000 0.072000 0.000000 0.216000 0.640000 0.048000 0.096000 0.000000 0.376000 0.296000 0.328000 0.104000 0.584000 0.136000 0.176000 0.000000 0.960000 0.008000 0.032000 0.056000 0.000000 0.104000 0.840000 0.000000 0.928000 0.000000 0.072000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYYCYBYCTCCBCCTC MEME-3 regular expression -------------------------------------------------------------------------------- [CT][CT][CT]C[CT][GTC][CT]C[TC]C[CA][CTG]CCTC -------------------------------------------------------------------------------- Time 982.20 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:28447541-28448041 2.21e-09 1_[-1(1.95e-06)]_26_[-2(2.07e-10)]_\ 35 chr1:6347951-6348451 1.78e-01 100 chr2:27663586-27664086 7.69e-02 100 chr5:134632643-134633143 6.58e-01 100 chr19:10701087-10701587 2.05e-03 40_[-1(7.61e-06)]_44 chr10:14954012-14954512 6.19e-01 100 chr19:39435599-39436099 9.20e-02 100 chr22:40370424-40370924 7.70e-02 66_[-3(5.24e-05)]_18 chr17:8630973-8631473 9.72e-01 100 chr13:40770995-40771495 4.50e-03 32_[+3(9.04e-06)]_52 chr2:3574931-3575431 1.82e-01 100 chr7:100673362-100673862 3.86e-01 100 chr14:66508085-66508585 2.33e-02 26_[+3(4.78e-05)]_58 chr15:66356256-66356756 9.05e-02 1_[+3(4.36e-05)]_83 chr1:161421844-161422344 9.99e-05 58_[+1(1.29e-07)]_26 chr5:10307487-10307987 1.19e-01 17_[-3(7.46e-05)]_67 chr5:134874245-134874745 2.56e-01 100 chr7:101815137-101815637 3.69e-01 100 chr1:146035807-146036307 2.69e-05 60_[-1(6.35e-05)]_1_[+3(2.27e-07)]_\ 7 chr19:58559114-58559614 1.22e-01 100 chr17:48728685-48729185 4.42e-03 [+3(7.14e-06)]_6_[+3(3.75e-06)]_4_\ [+3(5.24e-05)]_10_[+3(2.49e-06)]_16 chr12:57782328-57782828 3.77e-03 12_[+2(8.32e-07)]_66 chr6:83859693-83860193 1.93e-01 100 chr16:30065082-30065582 9.23e-01 100 chr4:140154060-140154560 4.29e-02 61_[+3(1.42e-05)]_23 chr17:8173135-8173635 5.21e-01 100 chr10:69318965-69319465 1.80e-04 25_[+2(1.96e-08)]_53 chr6:30647209-30647709 1.90e-02 57_[-3(1.02e-05)]_27 chr17:59209691-59210191 3.34e-02 32_[-3(1.77e-05)]_52 chr2:218898227-218898727 4.20e-01 100 chr19:35995168-35995668 9.15e-01 100 chr1:234373455-234373955 3.13e-01 100 chr19:40055851-40056351 1.83e-03 65_[-1(3.48e-05)]_19 chr19:33796949-33797449 6.63e-01 100 chr14:20657322-20657822 8.13e-01 100 chr15:68277448-68277948 6.71e-01 100 chr5:93582517-93583017 5.56e-08 59_[+2(1.32e-11)]_19 chr6:26532714-26533214 5.04e-06 12_[+1(1.41e-09)]_72 chr16:690180-690680 2.99e-01 100 chr4:70688123-70688623 8.43e-01 100 chr12:51025937-51026437 1.47e-01 100 chr19:37778992-37779492 1.10e-03 20_[-2(3.96e-05)]_42_[+3(1.77e-05)] chr10:97446041-97446541 1.07e-01 33_[-3(9.61e-05)]_51 chr17:28552199-28552699 5.52e-04 34_[+1(5.03e-06)]_50 chr16:858860-859360 5.08e-01 100 chr19:34999777-35000277 5.72e-01 100 chr15:72783624-72784124 6.51e-01 100 chr16:31033046-31033546 3.79e-01 100 chr16:30021287-30021787 1.39e-01 100 chr21:33641383-33641883 8.88e-01 100 chr7:39566181-39566681 9.26e-02 41_[-1(4.00e-05)]_43 chr19:49987085-49987585 4.82e-01 100 chr19:10420603-10421103 5.37e-02 66_[+1(1.46e-05)]_18 chr1:28648516-28649016 5.32e-01 100 chr19:36014416-36014916 7.98e-01 100 chr16:58129341-58129841 1.61e-01 100 chr12:131132364-13113286 8.15e-03 100 chr1:53945288-53945788 7.08e-01 100 chr1:925447-925947 1.47e-01 8_[-3(8.13e-05)]_76 chr19:38647566-38648066 4.66e-01 100 chr16:3150488-3150988 5.82e-06 32_[-1(1.86e-08)]_52 chr19:58327013-58327513 5.88e-02 25_[-3(7.46e-05)]_59 chr5:141969030-141969530 9.71e-03 33_[-3(3.75e-06)]_51 chr2:231464079-231464579 1.13e-01 84_[-3(6.84e-05)] chr11:43880505-43881005 8.32e-01 100 chr6:24774894-24775394 1.91e-01 100 chr19:39391356-39391856 6.87e-01 100 chr10:75379147-75379647 2.10e-01 50_[+2(9.66e-05)]_28 chr16:29973696-29974196 2.12e-03 39_[-3(8.47e-07)]_4_[-3(6.26e-05)]_\ 25 chr1:161427879-161428379 2.80e-02 7_[+1(7.61e-06)]_77 chr19:49118639-49119139 3.92e-02 62_[-3(1.14e-05)]_22 chr12:55715851-55716351 3.86e-01 100 chr3:9952312-9952812 9.85e-01 100 chr14:21455675-21456175 1.44e-02 41_[-3(1.27e-05)]_43 chr1:220046133-220046633 9.54e-01 100 chr1:40691546-40692046 4.35e-02 27_[+3(4.78e-05)]_57 chr16:30894124-30894624 1.16e-01 100 chr5:69369382-69369882 9.29e-01 100 chr17:44123643-44124143 1.26e-02 100 chr2:208025390-208025890 2.37e-01 100 chr5:65563233-65563733 4.15e-01 100 chr10:98446802-98447302 2.34e-06 2_[-1(8.17e-08)]_47_[-3(6.30e-06)]_\ 19 chr19:36686874-36687374 7.29e-04 32_[-2(1.27e-07)]_46 chr20:380709-381209 4.79e-01 100 chr2:55519011-55519511 1.00e-10 3_[+3(2.27e-07)]_41_[+2(5.20e-11)]_\ 18 chr15:72118337-72118837 2.46e-02 100 chr1:229558658-229559158 4.31e-01 100 chr15:72230423-72230923 1.89e-03 59_[-3(2.49e-06)]_25 chr19:46347192-46347692 5.59e-03 45_[-3(6.30e-06)]_39 chr15:75625354-75625854 6.99e-01 100 chr10:130110479-13011097 7.49e-01 100 chr17:30905975-30906475 2.35e-01 100 chr15:74889869-74890369 6.65e-02 36_[+2(7.50e-05)]_42 chr21:28992677-28993177 1.28e-02 77_[+3(6.30e-06)]_7 chr16:2251495-2251995 6.00e-01 100 chr1:1207724-1208224 2.47e-10 17_[-2(9.79e-11)]_45_[-3(2.27e-07)] chr17:82065694-82066194 5.26e-01 100 chr17:39235613-39236113 8.43e-02 100 chr6:43454640-43455140 9.18e-01 100 chr9:129641996-129642496 9.72e-01 100 chr17:78558319-78558819 5.42e-01 100 chr17:32007073-32007573 2.89e-02 16_[+3(8.06e-06)]_68 chr14:20662967-20663467 1.76e-02 34_[+1(1.46e-05)]_50 chr6:26322647-26323147 6.22e-06 17_[-1(2.80e-08)]_67 chr10:124093739-12409423 5.83e-05 29_[+3(2.27e-07)]_55 chr19:33133091-33133591 4.87e-03 45_[-1(1.71e-06)]_39 chr1:226061647-226062147 6.16e-01 100 chr6:85679044-85679544 6.89e-01 100 chr1:25858863-25859363 1.18e-02 16_[+3(1.02e-05)]_68 chr1:92831968-92832468 4.54e-01 100 chr6:28795780-28796280 4.60e-01 100 chr6:16759815-16760315 2.09e-02 23_[+3(6.26e-05)]_61 chr19:44845479-44845979 2.35e-01 100 chr6:159761935-159762435 6.55e-02 80_[-3(9.61e-05)]_4 chr17:40287736-40288236 3.58e-03 61_[-3(3.61e-05)]_23 chr1:145281005-145281505 4.99e-01 100 chr2:223957198-223957698 6.15e-01 100 chr11:120335889-12033638 1.34e-01 100 chr19:6516639-6517139 6.99e-02 71_[+3(2.97e-05)]_13 chr19:15125353-15125853 2.74e-01 100 chr19:41706673-41707173 2.81e-02 68_[+3(1.58e-05)]_16 chr1:54715649-54716149 6.51e-02 22_[+1(2.39e-05)]_62 chr5:90558437-90558937 1.13e-01 100 chr5:1950664-1951164 3.59e-03 3_[+2(6.54e-07)]_75 chr19:53979834-53980334 1.44e-07 24_[+2(6.21e-12)]_54 chr1:156660167-156660667 5.75e-06 21_[+2(4.20e-10)]_20_[+2(4.67e-05)]_\ 15 chr19:17225565-17226065 1.82e-05 64_[-2(7.36e-09)]_14 chr12:56266768-56267268 7.92e-02 100 chr12:131929246-13192974 4.59e-01 100 chr12:56041776-56042276 8.02e-01 100 chr12:96035787-96036287 1.56e-04 79_[-1(1.57e-07)]_5 chr16:56989460-56989960 1.94e-03 19_[-1(1.15e-06)]_65 chr1:180502202-180502702 2.23e-01 100 chr21:46635672-46636172 2.98e-02 70_[+3(5.73e-05)]_14 chr6:31620667-31621167 2.66e-01 100 chr1:231528313-231528813 8.40e-02 100 chr2:47176444-47176944 8.14e-02 100 chr12:120528706-12052920 1.41e-05 39_[+3(5.57e-06)]_45 chr19:6532213-6532713 3.30e-05 54_[+2(1.78e-09)]_2_[+2(8.33e-06)] chr19:10332879-10333379 8.10e-02 45_[+3(5.73e-05)]_39 chr1:9943168-9943668 3.40e-01 100 chr12:124927078-12492757 8.96e-05 76_[+1(1.57e-07)]_8 chr10:101693983-10169448 1.83e-02 100 chr19:38004557-38005057 2.60e-03 19_[+1(1.22e-05)]_65 chr17:68511905-68512405 3.18e-02 26_[-3(8.85e-05)]_11_[-3(9.04e-06)]_\ 31 chr17:73231994-73232494 6.10e-02 100 chr16:30378339-30378839 4.45e-02 69_[+3(1.02e-05)]_15 chr19:38930014-38930514 4.92e-01 100 chr17:42832847-42833347 3.13e-01 100 chr6:28597424-28597924 4.03e-04 74_[+1(1.31e-06)]_10 chr6:82260189-82260689 9.19e-02 100 chr19:12994931-12995431 2.15e-01 100 chr7:143901759-143902259 1.76e-01 100 chr5:150700666-150701166 8.69e-02 22_[+3(9.61e-05)]_62 chr5:95711460-95711960 2.01e-01 100 chr16:2961728-2962228 4.67e-01 100 chr10:100286246-10028674 5.27e-01 100 chr17:38730420-38730920 2.18e-02 22_[+3(7.14e-06)]_62 chr19:49877999-49878499 1.55e-02 59_[+1(2.04e-05)]_25 chr6:27602278-27602778 5.31e-01 100 chr3:9398374-9398874 9.58e-03 25_[-1(3.73e-05)]_59 chr14:22928944-22929444 6.09e-03 63_[+1(4.28e-05)]_21 chr10:133394184-13339468 6.18e-02 82_[+3(2.43e-05)]_2 chr16:75148395-75148895 3.53e-01 100 chr8:22010233-22010733 3.19e-02 54_[-1(3.73e-05)]_30 chr1:202808058-202808558 1.75e-01 100 chr1:32109110-32109610 2.79e-10 26_[+2(3.17e-11)]_26_[+1(1.95e-06)]_\ 10 chr19:40662716-40663216 7.63e-01 100 chr3:10320931-10321431 8.81e-01 100 chr19:38228485-38228985 2.22e-05 18_[-3(2.49e-06)]_32_[-3(3.61e-05)]_\ [+1(5.60e-06)]_2 chr6:42890442-42890942 9.01e-01 100 chr17:54968211-54968711 4.36e-01 100 chr8:37849636-37850136 1.24e-01 70_[-3(8.85e-05)]_14 chr15:89334685-89335185 1.83e-02 27_[-3(6.84e-05)]_57 chr1:1000508-1001008 3.42e-01 100 chr1:16545725-16546225 5.39e-05 23_[+1(2.21e-06)]_61 chr14:32076366-32076866 4.65e-02 7_[-3(5.73e-05)]_77 chr4:9691429-9691929 6.53e-03 37_[+3(1.77e-05)]_47 chr15:65517327-65517827 6.64e-01 100 chr5:140718694-140719194 5.50e-02 81_[-1(1.59e-05)]_3 chr19:50658336-50658836 9.53e-04 45_[-3(1.88e-06)]_39 chr12:10613311-10613811 4.89e-01 100 chr17:48493763-48494263 1.04e-02 15_[+1(9.25e-06)]_69 chr19:45863027-45863527 1.40e-01 100 chr19:36572884-36573384 4.13e-06 8_[-2(1.15e-08)]_6_[-2(1.66e-05)]_\ 42 chr12:121352310-12135281 8.42e-01 100 chr11:73142267-73142767 6.86e-02 63_[-3(6.26e-05)]_21 chr7:129054666-129055166 5.90e-01 100 chr1:236097026-236097526 8.03e-01 100 chr7:27130975-27131475 3.39e-02 64_[-1(2.21e-05)]_20 chr16:89240664-89241164 5.72e-01 100 chr6:28212811-28213311 6.61e-08 6_[+2(1.94e-06)]_53_[-1(6.85e-09)]_\ 3 chr19:40602102-40602602 2.80e-01 100 chr7:152463206-152463706 1.96e-01 100 chr12:57111950-57112450 1.88e-07 1_[-2(6.21e-12)]_48_[-2(6.21e-12)]_\ 7 chr13:96053076-96053576 1.10e-01 100 chr12:118136018-11813651 2.27e-01 100 chr16:30634377-30634877 5.04e-01 100 chr1:161440340-161440840 6.80e-01 100 chr17:952513-953013 1.00e-02 62_[+1(3.48e-05)]_22 chr19:29845187-29845687 1.63e-01 100 chr16:54286317-54286817 8.15e-03 49_[+3(2.16e-06)]_35 chr21:25607261-25607761 1.84e-02 44_[+3(7.14e-06)]_40 chr11:73787657-73788157 3.55e-01 100 chr9:35657551-35658051 4.79e-01 100 chr12:121888724-12188922 2.50e-05 19_[-3(5.57e-06)]_40_[-1(7.19e-05)]_\ 9 chr2:199955389-199955889 1.93e-02 5_[-1(2.04e-05)]_79 chr8:99012903-99013403 2.70e-02 7_[+1(3.01e-05)]_77 chr19:33294468-33294968 5.27e-03 45_[-1(1.95e-06)]_39 chr19:49867133-49867633 6.08e-01 100 chr17:78840944-78841444 8.99e-01 100 chr5:181206588-181207088 5.29e-01 100 chr10:102714592-10271509 8.82e-01 100 chr15:75368150-75368650 4.28e-01 100 chr1:20660995-20661495 4.88e-01 100 chr6:26341760-26342260 1.01e-02 31_[-3(1.14e-05)]_36_[-3(4.36e-05)]_\ 1 chr12:6970448-6970948 5.06e-02 100 chr3:51995645-51996145 2.48e-01 100 chr10:92574117-92574617 5.89e-02 100 chr12:53252027-53252527 4.13e-02 100 chr3:136196768-136197268 7.12e-01 100 chr1:42335128-42335628 7.23e-01 100 chr1:63367572-63368072 1.83e-01 100 chr16:229118-229618 9.51e-01 100 chr17:82037241-82037741 3.05e-01 100 chr6:53359413-53359913 1.12e-02 30_[-3(2.43e-05)]_54 chr19:58572950-58573450 1.57e-02 18_[+3(5.24e-05)]_66 chr20:44310910-44311410 8.95e-01 100 chr14:24036507-24037007 1.58e-01 100 chr1:225998966-225999466 8.01e-01 100 chr19:36418487-36418987 3.01e-01 100 chr20:49046180-49046680 1.32e-02 13_[+3(2.97e-05)]_71 chr1:28642701-28643201 3.18e-04 42_[+3(8.47e-07)]_42 chr15:101724055-10172455 1.97e-02 71_[+3(1.42e-05)]_13 chr2:229921920-229922420 6.75e-02 33_[+3(2.69e-05)]_51 chr19:984294-984794 4.56e-01 100 chr6:34392634-34393134 5.13e-01 100 chr1:32179583-32180083 7.77e-02 23_[+2(6.10e-05)]_55 chr15:72375692-72376192 8.24e-01 100 chr15:75023457-75023957 7.87e-03 100 chr6:125780037-125780537 4.80e-04 19_[+1(1.29e-07)]_65 chr5:148825895-148826395 7.34e-03 57_[+2(6.40e-06)]_21 chrX:13653119-13653619 3.53e-03 2_[+3(3.75e-06)]_82 chr19:37506831-37507331 7.40e-01 100 chr1:226122564-226123064 6.65e-01 100 chr12:50400902-50401402 1.26e-01 100 chr20:833636-834136 8.66e-02 43_[-1(2.79e-05)]_41 chr22:37848884-37849384 4.08e-09 9_[+3(2.27e-07)]_41_[+2(2.01e-09)]_\ 12 chr12:52023472-52023972 5.20e-04 21_[+3(6.84e-05)]_42_[+1(4.52e-06)]_\ 5 chr15:84981140-84981640 1.13e-01 45_[-3(7.46e-05)]_39 chr6:28141756-28142256 9.34e-01 100 chr10:72273749-72274249 1.81e-01 100 chr16:31142110-31142610 3.71e-02 38_[+1(5.95e-05)]_46 chr2:241881314-241881814 3.71e-05 77_[+2(9.20e-09)]_1 chr20:52972210-52972710 3.63e-09 15_[+2(7.25e-13)]_9_[+2(2.83e-07)]_\ 32 chr1:7961289-7961789 5.15e-01 100 chr15:82262355-82262855 3.19e-02 100 chr1:958884-959384 2.34e-01 100 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43_[-3(2.49e-06)]_10_[+2(6.21e-12)]_\ 9 chr19:39390701-39391201 5.29e-02 7_[-3(1.42e-05)]_77 chr19:43754975-43755475 2.16e-01 100 chr19:40190833-40191333 3.49e-02 6_[-1(4.90e-05)]_78 chrX:73944044-73944544 3.06e-01 100 chr10:93702412-93702912 3.57e-01 100 chr10:133786848-13378734 3.36e-02 100 chr12:121793987-12179448 1.60e-01 100 chr19:4723792-4724292 3.14e-01 100 chr19:35643421-35643921 5.29e-01 100 chr16:89192217-89192717 2.87e-02 53_[+1(1.22e-05)]_31 chr16:71808752-71809252 1.70e-02 61_[+1(1.22e-05)]_23 chr12:12266886-12267386 1.54e-02 100 chr20:58650953-58651453 2.28e-02 45_[-3(8.85e-05)]_39 chr21:39313558-39314058 3.33e-02 76_[-3(8.06e-06)]_8 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: indra ********************************************************************************