# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF524.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF524.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF524.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF524.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:27:49 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF524.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:27:50 PST 2017)
#        host: indra
#        when: Mon Dec 18 16:44:31 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.181 C 0.312 G 0.320 T 0.187


MOTIF GGGTYCGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGGTYCGA   TCGRACCC         90          4   5.9e-024   1.8e-019
#         GGGTTCGA   TCGAACCC         49          2   2.3e-013   7.1e-009
#         GGGTCCGA   TCGGACCC         42          2   2.9e-011   8.8e-007

letter-probability matrix: alength= 4 w= 8 nsites= 96 E= 1.8e-019
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.468750 0.000000 0.531250
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CACTTCCK DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACTTCCK   MGGAAGTG         27          0   5.5e-009   1.7e-004
#         CACTTCCG   CGGAAGTG         17          0   6.8e-006   2.1e-001
#         CACTTCCT   AGGAAGTG         11          0   4.7e-004   1.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 1.7e-004
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.633333 0.366667


MOTIF GAACCCR DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GAACCCR    YGGGTTC         54         13   1.1e-007   3.3e-003
#          GAACCCG    CGGGTTC         35          8   1.5e-005   4.7e-001
#          GAACCCA    TGGGTTC         19          5   3.0e-003   9.3e+001

letter-probability matrix: alength= 4 w= 7 nsites= 57 E= 3.3e-003
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.333333 0.000000 0.666667 0.000000


MOTIF HGCTGGGA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    HGCTGGGA   TCCCAGCD         29          3   9.7e-007   2.9e-002
#         AGCTGGGA   TCCCAGCT         10          1   5.7e-003   1.7e+002
#         CGCTGGGA   TCCCAGCG         12          2   6.2e-003   1.9e+002
#         TGCTGGGA   TCCCAGCA          7          0   7.7e-003   2.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 2.9e-002
0.344828 0.413793 0.000000 0.241379
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 20.69 seconds