# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF518A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF518A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF518A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF518A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:26:59 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF518A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:27:00 PST 2017)
#        host: wotan
#        when: Mon Dec 18 16:52:17 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.264 C 0.244 G 0.244 T 0.249


MOTIF CCGGAARH DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCGGAARH   DYTTCCGG        252         14   3.6e-071   1.1e-066
#         CCGGAAGT   ACTTCCGG        118          2   1.1e-035   3.5e-031
#         CCGGAAGC   GCTTCCGG         86          4   1.1e-022   3.4e-018
#         CCGGAAAC   GTTTCCGG         31          2   4.6e-008   1.5e-003
#         CCGGAAGA   TCTTCCGG         31          2   4.6e-008   1.5e-003
#         CCGGAAAT   ATTTCCGG         19          0   1.7e-006   5.2e-002
#         CCGGAAAA   TTTTCCGG         17          5   8.0e-003   2.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 318 E= 1.1e-066
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.210692 0.000000 0.789308 0.000000
0.150943 0.402516 0.000000 0.446541


MOTIF TAAATAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TAAATAAA   TTTATTTA        163         33   8.2e-026   2.5e-021
#         TAAATAAA   TTTATTTA        163         33   8.2e-026   2.5e-021

letter-probability matrix: alength= 4 w= 8 nsites= 846 E= 2.5e-021
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TCTCAAAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TCTCAAAA   TTTTGAGA         79          4   1.7e-020   5.1e-016
#         TCTCAAAA   TTTTGAGA         79          4   1.7e-020   5.1e-016

letter-probability matrix: alength= 4 w= 8 nsites= 79 E= 5.1e-016
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GGAARY DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      GGAARY     RYTTCC        265        118   3.5e-020   1.1e-015
#           GGAAGT     ACTTCC        125         26   4.8e-019   1.5e-014
#           GGAAAC     GTTTCC         69         31   4.7e-005   1.4e+000
#           GGAAGC     GCTTCC         87         49   3.5e-004   1.1e+001
#           GGAAAT     ATTTCC         48         27   8.3e-003   2.5e+002

letter-probability matrix: alength= 4 w= 6 nsites= 364 E= 1.1e-015
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.335165 0.000000 0.664835 0.000000
0.000000 0.447802 0.000000 0.552198


MOTIF CAGAGY DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CAGAGY     RCTCTG        121         35   4.0e-014   1.2e-009
#           CAGAGC     GCTCTG         73         21   9.9e-009   2.9e-004
#           CAGAGT     ACTCTG         59         14   2.1e-008   6.2e-004

letter-probability matrix: alength= 4 w= 6 nsites= 140 E= 1.2e-009
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.535714 0.000000 0.464286


MOTIF CWC DREME-6

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST         CWC        GWG        594        550   2.2e-010   6.5e-006
#              CTC        GAG        568        520   1.1e-006   3.3e-002
#              CAC        GTG        512        477   4.9e-003   1.4e+002

letter-probability matrix: alength= 4 w= 3 nsites= 2917 E= 6.5e-006
0.000000 1.000000 0.000000 0.000000
0.403840 0.000000 0.000000 0.596160
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 82.20 seconds