# WARNING: this file is not sorted! # db id alt consensus E-value adj_p-value log_adj_p-value bin_location bin_width total_width sites_in_bin total_sites p_success p-value mult_tests 1 ATAAATAAATAAATAAATAAATAAATAAATAAA MEME-1 ATAAATAAATAAATAAATAAATAAATAAATAAA 2.9e-293 4.0e-296 -680.19 0.0 26 468 285 336 0.05556 1.7e-298 233 1 TTTTTTGAGAYRGAGTCTCRCT MEME-2 TTTTTTGAGAYRGAGTCTCRCT 4.2e-106 5.7e-109 -249.25 0.0 91 479 257 343 0.18998 2.4e-111 239 2 TAAATAAA DREME-1 TAAATAAA 1.1e-240 1.5e-243 -559.10 0.0 49 493 300 346 0.09939 6.2e-246 246 2 RTCTCAA DREME-2 GTCTCAA 1.7e-042 2.3e-045 -102.79 0.0 84 494 151 267 0.17004 9.3e-048 246 2 AGACYC DREME-3 AGACTC 4.7e-028 6.3e-031 -69.54 0.0 95 495 148 293 0.19192 2.5e-033 247 2 ACAGDG DREME-4 ACAGAG 7.0e-025 9.4e-028 -62.23 0.0 107 495 206 449 0.21616 3.8e-030 247 3 M0104_1.02 (ARID3B)_(Mus_musculus)_(DBD_0.99) AWATTAATWAN 4.2e-034 5.6e-037 -83.47 0.0 60 490 163 447 0.12245 2.3e-039 244 3 M0105_1.02 (ARID3C)_(Mus_musculus)_(DBD_0.87) NTTTDATHN 1.2e-009 1.6e-012 -27.19 0.0 68 492 132 484 0.13821 6.4e-015 245 3 M0398_1.02 (ZSCAN10)_(Mus_musculus)_(DBD_0.82) NGKRAGTGCNN 4.8e-011 6.5e-014 -30.37 0.0 162 490 265 528 0.33061 2.7e-016 244 3 M0424_1.02 (SNAI3)_(Mus_musculus)_(DBD_0.75) NNTGACAKNN 7.4e-002 1.0e-004 -9.21 0.0 107 491 175 569 0.21792 4.1e-007 245 3 M0436_1.02 (ZNF35)_(Mus_musculus)_(DBD_0.96) TTRTTKDHYN 7.6e-094 1.0e-096 -221.02 0.0 67 491 282 545 0.13646 4.2e-099 245 3 M0437_1.02 (ZNF32)_(Mus_musculus)_(DBD_0.99) TATRTATRT 4.3e-069 5.8e-072 -164.04 0.0 46 492 192 466 0.09350 2.3e-074 245 3 M0442_1.02 (ZBTB3)_(Mus_musculus)_(DBD_1.00) NNTGCAGYG 2.8e-010 3.7e-013 -28.62 0.0 212 492 342 574 0.43089 1.5e-015 245 3 M0633_1.02 DMRT2 KAATKTATWN 9.1e-093 1.2e-095 -218.54 0.0 55 491 246 501 0.11202 5.0e-098 245 3 M0718_1.02 FOXK1 DNRTMAACAH 6.2e-027 8.3e-030 -66.96 0.0 63 491 180 564 0.12831 3.4e-032 245 3 M0719_1.02 FOXG1 RTAAACAW 5.9e-022 8.0e-025 -55.49 0.0 45 493 133 529 0.09128 3.2e-027 246 3 M0728_1.02 (FOXJ1)_(Mus_musculus)_(DBD_1.00) NRTAAACAAANN 8.1e-062 1.1e-064 -147.28 0.0 41 489 191 549 0.08384 4.5e-067 244 3 M0736_1.02 (FOXK2)_(Mus_musculus)_(DBD_0.90) RTAAACAA 4.6e-022 6.1e-025 -55.75 0.0 43 493 135 565 0.08722 2.5e-027 246 3 M0737_1.02 (FOXB2)_(Mus_musculus)_(DBD_0.94) WRWGTAAAYA 2.5e-123 3.4e-126 -288.90 0.0 47 491 276 554 0.09572 1.4e-128 245 3 M0747_1.02 (FOXL2)_(Mus_musculus)_(DBD_0.70) WNNRTAAAYA 8.3e-096 1.1e-098 -225.54 0.0 57 491 271 565 0.11609 4.6e-101 245 3 M0893_1.02 ZFHX2 NNTAATTANN 5.3e-001 7.2e-004 -7.24 0.0 403 491 393 437 0.82077 2.9e-006 245 3 M0896_1.02 VENTX TTAATTAG 1.1e-020 1.4e-023 -52.61 0.0 49 493 130 486 0.09939 5.8e-026 246 3 M0897_1.02 HOXB13 DTTWAYDRBN 3.3e0000 4.4e-003 -5.42 0.0 105 491 144 491 0.21385 1.8e-005 245 3 M0906_1.02 (VTN)_(Mus_musculus)_(DBD_0.79) NMTTAATTAR 3.9e-043 5.3e-046 -104.26 0.0 43 491 149 442 0.08758 2.1e-048 245 3 M0958_1.02 (LHX4)_(Mus_musculus)_(DBD_1.00) BYAATYW 2.1e0000 2.9e-003 -5.85 0.0 388 494 425 494 0.78543 1.2e-005 246 3 M0969_1.02 (LHX8)_(Mus_musculus)_(DBD_1.00) NYAATYANN 8.3e0000 1.1e-002 -4.50 0.0 438 492 481 511 0.89024 4.6e-005 245 3 M1157_1.02 (HOXB9)_(PBM_CONSTRUCTS)_(DBD_1.00) WTTWATKRBN 7.9e-002 1.1e-004 -9.14 0.0 63 491 100 477 0.12831 4.4e-007 245 3 M1528_1.02 (RFX6)_(Mus_musculus)_(DBD_0.66) NCNTRGYWAC 6.3e-004 8.5e-007 -13.98 0.0 123 491 203 562 0.25051 3.5e-009 245 3 M1582_1.02 (HMG20B)_(Mus_musculus)_(DBD_0.94) NWAWATAATWN 1.7e-050 2.3e-053 -121.22 0.0 52 490 179 466 0.10612 9.3e-056 244 3 M1583_1.02 (BBX)_(Mus_musculus)_(DBD_0.99) TTCATTGA 1.2e-003 1.6e-006 -13.36 0.0 193 493 218 411 0.39148 6.4e-009 246 3 M1668_1.02 PRKRIR NYCVNVSKRNNN 2.4e-001 3.3e-004 -8.02 0.0 305 489 380 526 0.62372 1.3e-006 244 3 M1884_1.02 MEF2A DKCTAAAAATAGMHH 7.6e-006 1.0e-008 -18.40 0.0 62 486 110 459 0.12757 4.2e-011 242 3 M2283_1.02 FOXP1 HWWADGTAAACAAAR 6.7e-071 9.0e-074 -168.19 0.0 56 486 235 551 0.11523 3.7e-076 242 3 M2287_1.02 (HOXC9)_(Mus_musculus)_(DBD_0.98) RGCMATAAATCAB 2.6e-049 3.5e-052 -118.49 0.0 62 488 196 473 0.12705 1.4e-054 243 3 M2385_1.02 FOXP2 RWGTAAACAVR 4.5e-070 6.0e-073 -166.29 0.0 44 490 202 523 0.08980 2.5e-075 244 3 M4452_1.02 BATF TYYYRWWATGASTCA 6.5e-007 8.8e-010 -20.85 0.0 76 486 139 500 0.15638 3.6e-012 242 3 M4467_1.02 MEF2C DDKCYAAAAATAGMH 5.2e-014 7.0e-017 -37.20 0.0 64 486 140 490 0.13169 2.9e-019 242 3 M4471_1.02 PAX5 BCAGYSRAGCGTGAC 1.3e-001 1.7e-004 -8.69 0.0 362 486 419 502 0.74486 7.0e-007 242 3 M4509_1.02 POU5F1 ATYTGCATRACAAWGRV 1.3e0000 1.8e-003 -6.33 0.0 94 484 120 425 0.19421 7.4e-006 241 3 M4526_1.02 SMARCC1 DSRVDGTGASTCAKV 1.6e0000 2.2e-003 -6.14 0.0 278 486 319 477 0.57202 8.9e-006 242 3 M4551_1.02 ZNF274 YTCAYACTGGAGAGAAA 5.9e-012 8.0e-015 -32.46 0.0 148 484 154 281 0.30579 3.3e-017 241 3 M4567_1.02 FOXA2 NMWRWGTAAACANNN 5.5e-079 7.4e-082 -186.81 0.0 56 486 246 554 0.11523 3.1e-084 242 3 M4572_1.02 MAFF TGCTGACTCAGCAWW 1.0e-003 1.3e-006 -13.52 0.0 292 486 297 402 0.60082 5.6e-009 242 3 M4629_1.02 NFE2 VRTGACTCAGCANWWYB 8.6e-002 1.2e-004 -9.06 0.0 268 484 257 378 0.55372 4.8e-007 241 3 M4681_1.02 BACH2 TGCTGAGTCA 4.2e-001 5.7e-004 -7.47 0.0 287 491 273 391 0.58452 2.3e-006 245 3 M4692_1.02 SIX5 ACTACAAYTC 4.1e-002 5.6e-005 -9.80 0.0 79 491 112 436 0.16090 2.3e-007 245 3 M4698_1.02 HNF4A BTGRMCTTTGVHCYB 4.0e-005 5.4e-008 -16.74 0.0 158 486 222 480 0.32510 2.2e-010 242 3 M5287_1.02 ALX4 HTAATYNAATTAN 4.8e-137 6.4e-140 -320.50 0.0 40 488 252 471 0.08197 2.6e-142 243 3 M5291_1.02 ARX YTAATTNRATTAN 7.1e-175 9.6e-178 -407.60 0.0 40 488 275 440 0.08197 3.9e-180 243 3 M5294_1.02 BARHL2 NHTAAAYGNY 6.4e-016 8.7e-019 -41.59 0.0 57 491 136 503 0.11609 3.5e-021 245 3 M5300_1.02 BARX1 TAATBGNTWTTTAATBG 2.3e-005 3.1e-008 -17.30 0.0 82 484 105 339 0.16942 1.3e-010 241 3 M5322_1.02 CPEB1 YTTTTATT 2.3e-018 3.1e-021 -47.21 0.0 65 493 153 504 0.13185 1.3e-023 246 3 M5335_1.02 CUX2 ATCGATAHNDTTATYGAT 1.8e-220 2.4e-223 -512.58 0.0 43 483 287 364 0.08903 1.0e-225 241 3 M5348_1.02 DRGX NTAATYHAATTAN 4.4e-097 5.9e-100 -228.48 0.0 40 488 209 454 0.08197 2.4e-102 243 3 M5425_1.02 ETV6 CCGGAASCGGAAGYR 1.8e0000 2.4e-003 -6.04 0.0 276 486 200 289 0.56790 9.8e-006 242 3 M5435_1.02 FOXB1 TCGCYGTGTCATTC 6.6e-001 8.9e-004 -7.02 0.0 131 487 149 399 0.26899 3.7e-006 243 3 M5445_1.02 FOXD2 DRTMAATATTWDYD 7.4e-011 1.0e-013 -29.93 0.0 51 487 110 464 0.10472 4.1e-016 243 3 M5446_1.02 FOXD4L2 RTAAACA 7.6e-087 1.0e-089 -204.91 0.0 44 494 232 569 0.08907 4.1e-092 246 3 M5460_1.02 FOXL1 RTAAACA 3.3e-107 4.5e-110 -251.79 0.0 44 494 253 562 0.08907 1.8e-112 246 3 M5504_1.02 HES5 YGGCACGTGYCR 2.7e0000 3.6e-003 -5.63 0.0 401 489 230 251 0.82004 1.5e-005 244 3 M5544_1.02 HOXC10 DTTTWATKDB 5.1e-022 6.9e-025 -55.63 0.0 69 491 175 539 0.14053 2.8e-027 245 3 M5553_1.02 HOXC13 CYAATAAAAH 1.0e0000 1.4e-003 -6.57 0.0 67 491 100 474 0.13646 5.7e-006 245 3 M5555_1.02 HOXD11 RTCGTAAAAH 3.5e-002 4.7e-005 -9.96 0.0 65 491 90 394 0.13238 1.9e-007 245 3 M5584_1.02 ISX YTAATCTAATTAR 3.0e-136 4.1e-139 -318.66 0.0 44 488 242 408 0.09016 1.7e-141 243 3 M5604_1.02 LMX1A YTAATTAA 9.0e-021 1.2e-023 -52.77 0.0 65 493 148 459 0.13185 4.9e-026 246 3 M5605_1.02 LMX1B TTAATTRN 1.6e-022 2.2e-025 -56.79 0.0 65 493 156 478 0.13185 8.8e-028 246 3 M5621_1.02 MEIS3 SCTGTCAH 7.8e-002 1.0e-004 -9.16 0.0 125 493 196 564 0.25355 4.3e-007 246 3 M5635_1.02 MNX1 TTTAATTRNH 1.1e-016 1.5e-019 -43.33 0.0 63 491 144 494 0.12831 6.2e-022 245 3 M5637_1.02 MSX1 TAATTGSWWTTTAATTRS 2.8e-043 3.8e-046 -104.58 0.0 53 483 162 423 0.10973 1.6e-048 241 3 M5697_1.02 ONECUT3 DTTATYGATTTTTY 5.8e-164 7.8e-167 -382.48 0.0 57 487 296 431 0.11704 3.2e-169 243 3 M5711_1.02 PAX9 KKCASTCAWGCGTGACS 2.3e-002 3.1e-005 -10.38 0.0 180 484 102 181 0.37190 1.3e-007 241 3 M5714_1.02 PHOX2A TAATYYAATTA 3.0e-073 4.0e-076 -173.61 0.0 44 490 192 458 0.08980 1.6e-078 244 3 M5715_1.02 PHOX2B TAATYYAATTA 3.9e-070 5.2e-073 -166.44 0.0 44 490 189 461 0.08980 2.1e-075 244 3 M5740_1.02 POU4F1 ATGMATAATTAATG 8.7e-169 1.2e-171 -393.58 0.0 39 487 270 449 0.08008 4.8e-174 243 3 M5743_1.02 POU4F3 RTGMATWATTAATGAV 6.1e-164 8.2e-167 -382.43 0.0 41 485 269 440 0.08454 3.4e-169 242 3 M5753_1.02 PROX1 YAAGACGYCTTA 6.4e-014 8.6e-017 -36.99 0.0 93 489 102 225 0.19018 3.5e-019 244 3 M5777_1.02 RFX4 NGTWRCCATGGYWACS 9.3e-001 1.3e-003 -6.68 0.0 347 485 307 377 0.71546 5.2e-006 242 3 M5889_1.02 TBX21 GGTGTGAHWTCACACC 3.7e0000 4.9e-003 -5.31 0.0 423 485 204 213 0.87216 2.0e-005 242 3 M5941_1.02 UNCX NTAATYBAATTAN 1.9e-058 2.6e-061 -139.50 0.0 40 488 173 487 0.08197 1.1e-063 243 3 M6114_1.02 FOXA1 WAWGYAAAYA 1.9e-102 2.5e-105 -240.84 0.0 73 491 305 549 0.14868 1.0e-107 245 3 M6139_1.02 AHR KCACGCRAH 2.5e-001 3.4e-004 -7.99 0.0 352 492 414 513 0.71545 1.4e-006 245 3 M6141_1.02 ALX1 TAATBYAATTAY 7.1e-030 9.6e-033 -73.72 0.0 45 489 139 478 0.09202 3.9e-035 244 3 M6147_1.02 ARID3A TWWAWTTTGATWYYVWTTAATH 1.0e-164 1.4e-167 -384.23 0.0 45 479 274 424 0.09395 5.7e-170 239 3 M6157_1.02 BARX2 TYRWTAATKR 3.7e-002 5.0e-005 -9.91 0.0 55 491 94 494 0.11202 2.0e-007 245 3 M6186_1.02 DBP KVTTRCATAAB 9.7e0000 1.3e-002 -4.34 0.0 426 490 445 480 0.86939 5.4e-005 244 3 M6187_1.02 DDIT3 GGGGATTGCABBB 2.7e-005 3.7e-008 -17.12 0.0 210 488 290 508 0.43033 1.5e-010 243 3 M6211_1.02 EOMES CGGGGATACGAAAT 1.5e0000 2.1e-003 -6.18 0.0 177 487 80 148 0.36345 8.5e-006 243 3 M6234_1.02 FOXA3 RVWAARYAAAYAD 3.0e-131 4.0e-134 -307.16 0.0 58 488 304 536 0.11885 1.6e-136 243 3 M6235_1.02 FOXC1 CYWAAGTAAACAWHG 5.0e-059 6.7e-062 -140.86 0.0 56 486 198 465 0.11523 2.8e-064 242 3 M6236_1.02 FOXC2 YCTRDSWAAACAAAC 9.7e0000 1.3e-002 -4.34 0.0 402 486 409 458 0.82716 5.4e-005 242 3 M6237_1.02 FOXD3 AAACAAACA 9.8e-104 1.3e-106 -243.80 0.0 46 492 249 540 0.09350 5.4e-109 245 3 M6238_1.02 FOXF1 WAAATAAACAW 2.8e-131 3.7e-134 -307.23 0.0 56 490 303 548 0.11429 1.5e-136 244 3 M6239_1.02 FOXF2 HWADGTAAACA 4.6e-108 6.2e-111 -253.76 0.0 58 490 275 523 0.11837 2.5e-113 244 3 M6241_1.02 FOXJ2 WAAAYAAAYA 2.1e-168 2.9e-171 -392.68 0.0 41 491 300 539 0.08350 1.2e-173 245 3 M6242_1.02 FOXJ3 TAAACAWWAAMMA 6.0e-076 8.1e-079 -179.81 0.0 60 488 240 516 0.12295 3.3e-081 243 3 M6244_1.02 FOXM1 RWAAWCAMWCAAV 1.9e-093 2.5e-096 -220.13 0.0 56 488 270 578 0.11475 1.0e-098 243 3 M6245_1.02 FOXO1 AAAWWVWAAACAAVHH 2.0e-106 2.7e-109 -250.01 0.0 53 485 272 553 0.10928 1.1e-111 242 3 M6246_1.02 FOXO3 MKGWAAACAARYM 9.2e-107 1.2e-109 -250.77 0.0 58 488 283 554 0.11885 5.1e-112 243 3 M6247_1.02 FOXO4 MRTAAACAA 4.5e-047 6.1e-050 -113.32 0.0 44 492 178 561 0.08943 2.5e-052 245 3 M6250_1.02 FOXQ1 AAATAAACAATD 2.6e-092 3.5e-095 -217.49 0.0 49 489 228 480 0.10020 1.4e-097 244 3 M6269_1.02 HBP1 AYYCATTGA 4.3e-002 5.8e-005 -9.76 0.0 58 492 102 519 0.11789 2.3e-007 245 3 M6276_1.02 HINFP DMSHHMGCGGACGTTV 7.3e-004 9.8e-007 -13.84 0.0 223 485 182 288 0.45979 4.0e-009 242 3 M6281_1.02 HNF1A KGKTAAWBATTAACY 1.9e-010 2.5e-013 -29.00 0.0 38 486 88 446 0.07819 1.1e-015 242 3 M6282_1.02 HNF1B GTTAAWYATTAACY 1.5e-007 2.0e-010 -22.31 0.0 49 487 99 464 0.10062 8.4e-013 243 3 M6285_1.02 ONECUT1 WWTATTGATTTWDH 1.0e-150 1.4e-153 -351.97 0.0 57 487 300 472 0.11704 5.7e-156 243 3 M6289_1.02 HOXA9 WCATAAAYYRTH 1.1e-039 1.5e-042 -96.30 0.0 55 489 178 511 0.11247 6.1e-045 244 3 M6292_1.02 HOXA5 CATTAATYAR 5.5e-007 7.4e-010 -21.02 0.0 65 491 119 475 0.13238 3.0e-012 245 3 M6296_1.02 HOXB6 KKCATMAATCAWT 1.8e-009 2.4e-012 -26.74 0.0 76 488 108 331 0.15574 1.0e-014 243 3 M6297_1.02 HOXB7 MATYAATCAA 1.3e-114 1.8e-117 -268.84 0.0 43 491 234 461 0.08758 7.2e-120 245 3 M6298_1.02 HOXB8 BMATTAATCAA 7.2e-100 9.7e-103 -234.90 0.0 46 490 221 443 0.09388 4.0e-105 244 3 M6299_1.02 HOXC6 AAAGTAATAAATCAT 2.8e-194 3.8e-197 -452.28 0.0 48 486 294 406 0.09877 1.6e-199 242 3 M6301_1.02 HOXD10 AATTAAARCA 1.3e-016 1.7e-019 -43.20 0.0 89 491 187 521 0.18126 7.1e-022 245 3 M6304_1.02 HOXD9 HMATNAAWYT 3.8e-004 5.1e-007 -14.50 0.0 73 491 119 470 0.14868 2.1e-009 245 3 M6311_1.02 IRF5 KAAAGGRAARCMAAAWSWGA 6.6e0000 8.9e-003 -4.72 0.0 117 481 86 239 0.24324 3.7e-005 240 3 M6312_1.02 IRF7 GAAASYGAAA 8.5e-002 1.1e-004 -9.07 0.0 91 491 144 525 0.18534 4.7e-007 245 3 M6329_1.02 LHX3 AAAATTAATTARY 3.1e-091 4.1e-094 -215.02 0.0 54 488 222 427 0.11066 1.7e-096 243 3 M6348_1.02 MTF1 MGKGCCGTGTGCAAADS 9.6e-008 1.3e-010 -22.77 0.0 172 484 221 420 0.35537 5.4e-013 241 3 M6360_1.02 NFE2L2 VRTGACTCAGCA 8.2e0000 1.1e-002 -4.51 0.0 273 489 353 550 0.55828 4.5e-005 244 3 M6378_1.02 NKX3-1 WWTAAGTATWTWW 4.2e-176 5.7e-179 -410.43 0.0 42 488 291 474 0.08607 2.3e-181 243 3 M6399_1.02 ONECUT2 DKSWTKWTATKGATTTTWYYT 3.2e-161 4.3e-164 -376.17 0.0 46 480 279 444 0.09583 1.8e-166 239 3 M6413_1.02 PBX2 VMATCAATCAMWTYM 5.7e-061 7.7e-064 -145.32 0.0 64 486 237 553 0.13169 3.2e-066 242 3 M6417_1.02 POU1F1 RWATATTCATKAR 4.5e-044 6.0e-047 -106.43 0.0 48 488 175 523 0.09836 2.5e-049 243 3 M6426_1.02 POU3F2 CATRAATWWT 1.6e-115 2.1e-118 -270.94 0.0 43 491 248 512 0.08758 8.7e-121 245 3 M6438_1.02 PROP1 RASHAATTAAHWTVR 1.5e-022 2.1e-025 -56.84 0.0 68 486 169 511 0.13992 8.5e-028 242 3 M6471_1.02 SOX13 YATTGTTY 2.0e0000 2.6e-003 -5.94 0.0 55 493 95 549 0.11156 1.1e-005 246 3 M6510_1.02 TEF TGTTTATRTAAMTK 3.9e-046 5.2e-049 -111.17 0.0 59 487 204 545 0.12115 2.2e-051 243 3 M6542_1.02 ZBTB6 VGRTGATRGAGCC 1.3e-004 1.7e-007 -15.56 0.0 114 488 178 504 0.23361 7.2e-010 243 3 M6546_1.02 ZFHX3 ATTAWTAATTA 7.9e-172 1.1e-174 -400.59 0.0 48 490 285 428 0.09796 4.4e-177 244 ## # Detailed descriptions of columns in this file: # # db: The name of the database (file name) that contains the motif. # id: A name for the motif that is unique in the motif database file. # alt: An alternate name of the motif that may be provided # in the motif database file. # consensus: A consensus sequence computed from the motif. # E-value: The expected number motifs that would have least one. # region as enriched for best matches to the motif as the reported region. # The E-value is the p-value multiplied by the number of motifs in the # input database(s). # adj_p-value: The probability that any tested region would be as enriched for # best matches to this motif as the reported region is. # By default the p-value is calculated by using the one-tailed binomial # test on the number of sequences with a match to the motif # that have their best match in the reported region, corrected for # the number of regions and score thresholds tested. # The test assumes that the probability that the best match in a sequence # falls in the region is the region width divided by the # number of places a motif # can align in the sequence (sequence length minus motif width plus 1). # When CentriMo is run in discriminative mode with a negative # set of sequences, the p-value of a region is calculated # using the Fisher exact test on the # enrichment of best matches in the positive sequences relative # to the negative sequences, corrected # for the number of regions and score thresholds tested. # The test assumes that the probability that the best match (if any) # falls into a given region # is the same for all positive and negative sequences. # log_adj_p-value: Log of adjusted p-value. # bin_location: Location of the center of the most enriched region. # bin_width: The width (in sequence positions) of the most enriched region. # A best match to the motif is counted as being in the region if the # center of the motif falls in the region. # total_width: The window maximal size which can be reached for this motif: # rounded(sequence length - motif length +1)/2 # sites_in_bin: The number of (positive) sequences whose best match to the motif # falls in the reported region. # Note: This number may be less than the number of # (positive) sequences that have a best match in the region. # The reason for this is that a sequence may have many matches that score # equally best. # If n matches have the best score in a sequence, 1/n is added to the # appropriate bin for each match. # total_sites: The number of sequences containing a match to the motif # above the score threshold. # p_success: The probability of falling in the enriched window: # bin width / total width # p-value: The uncorrected p-value before it gets adjusted to the # number of multiple tests to give the adjusted p-value. # mult_tests: This is the number of multiple tests (n) done for this motif. # It was used to correct the original p-value of a region for # multiple tests using the formula: # p' = 1 - (1-p)^n where p is the uncorrected p-value. # The number of multiple tests is the number of regions # considered times the number of score thresholds considered. # It depends on the motif length, sequence length, and the type of # optimizations being done (central enrichment, local enrichment, # score optimization).