# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF514.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF514.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF514.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 598 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF514.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 17:46:09 PDT 2018) # negatives: 598 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF514.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 17:46:10 PDT 2018) # host: kali # when: Thu May 10 18:41:31 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.327 C 0.173 G 0.174 T 0.326 MOTIF TAAATAAA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST TAAATAAA TTTATTTA 334 54 3.9e-072 9.6e-068 # TAAATAAA TTTATTTA 334 54 3.9e-072 9.6e-068 letter-probability matrix: alength= 4 w= 8 nsites= 1618 E= 9.6e-068 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF RTCTCAA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST RTCTCAA TTGAGAY 199 9 4.9e-056 1.2e-051 # GTCTCAA TTGAGAC 132 3 3.9e-039 9.5e-035 # ATCTCAA TTGAGAT 67 6 3.9e-015 9.4e-011 letter-probability matrix: alength= 4 w= 7 nsites= 202 E= 1.2e-051 0.331683 0.000000 0.668317 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGACYC DREME-3 # Word RC Word Pos Neg P-value E-value # BEST AGACYC GRGTCT 169 15 1.5e-039 3.6e-035 # AGACTC GAGTCT 136 9 7.0e-034 1.7e-029 # AGACCC GGGTCT 33 6 5.3e-006 1.3e-001 letter-probability matrix: alength= 4 w= 6 nsites= 172 E= 3.6e-035 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.203488 0.000000 0.796512 0.000000 1.000000 0.000000 0.000000 MOTIF ACAGDG DREME-4 # Word RC Word Pos Neg P-value E-value # BEST ACAGDG CHCTGT 204 38 3.1e-035 7.5e-031 # ACAGAG CTCTGT 164 30 9.7e-028 2.3e-023 # ACAGTG CACTGT 28 4 7.6e-006 1.8e-001 # ACAGGG CCCTGT 26 9 2.6e-003 6.3e+001 letter-probability matrix: alength= 4 w= 6 nsites= 239 E= 7.5e-031 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.761506 0.000000 0.117155 0.121339 0.000000 0.000000 1.000000 0.000000 MOTIF CCMRG DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CCMRG CYKGG 229 109 6.6e-015 1.5e-010 # CCCAG CTGGG 119 40 6.5e-012 1.5e-007 # CCAGG CCTGG 114 48 1.4e-008 3.2e-004 # CCAAG CTTGG 75 41 5.9e-004 1.4e+001 # CCCGG CCGGG 27 11 6.2e-003 1.5e+002 letter-probability matrix: alength= 4 w= 5 nsites= 310 E= 1.5e-010 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.593548 0.406452 0.000000 0.000000 0.574194 0.000000 0.425806 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF TAGAGAYA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST TAGAGAYA TRTCTCTA 24 0 4.7e-008 1.0e-003 # TAGAGATA TATCTCTA 17 0 6.8e-006 1.5e-001 # TAGAGACA TGTCTCTA 7 0 7.7e-003 1.7e+002 letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.0e-003 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.291667 0.000000 0.708333 1.000000 0.000000 0.000000 0.000000 MOTIF GAAACTC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST GAAACTC GAGTTTC 22 0 2.0e-007 4.3e-003 # GAAACTC GAGTTTC 22 0 2.0e-007 4.3e-003 letter-probability matrix: alength= 4 w= 7 nsites= 23 E= 4.3e-003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 39.83 seconds