Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF513.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF513.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF513.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
CWTCMTCMTCATCMTC | 16 | CATCATCATCATCATC |
GATGATGATGAKGAWG | 16 | GATGATGATGATGATG |
CHTCHTCHTCHTCMTC | 16 | CATCATCATCATCATC |
RTGRTGATGRTG | 12 | GTGATGATGATG |
GARGARGARGARGARG | 16 | GAAGAGGAGGAGGAAG |
TGATGRTGA | 9 | TGATGGTGA |
YTCYTCYTCYTC | 12 | TTCCTCTTCCTC |
AGGARGA | 7 | AGGAGGA |
AYCAYCA | 7 | ACCATCA |
AAAAGTAAAACTTGCT | 16 | AAAAGTAAAACTTGCT |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF513.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.256 C 0.244 G 0.244 T 0.256
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
AAAAGTAAAACTTGCT | MEME-10 | chr10 | - | 72918058 | 72918073 | 2.83e-10 | 2.35e-05 | AAAAGTAAAACTTGCT |
AAAAGTAAAACTTGCT | MEME-10 | chr5 | - | 93683241 | 93683256 | 2.83e-10 | 2.35e-05 | AAAAGTAAAACTTGCT |
AAAAGTAAAACTTGCT | MEME-10 | chr10 | - | 96189743 | 96189758 | 2.83e-10 | 2.35e-05 | AAAAGTAAAACTTGCT |
AAAAGTAAAACTTGCT | MEME-10 | chr2 | - | 197380100 | 197380115 | 2.83e-10 | 2.35e-05 | AAAAGTAAAACTTGCT |
AAAAGTAAAACTTGCT | MEME-10 | chr1 | + | 27207390 | 27207405 | 2.83e-10 | 2.35e-05 | AAAAGTAAAACTTGCT |
AAAAGTAAAACTTGCT | MEME-10 | chr11 | + | 62331404 | 62331419 | 2.83e-10 | 2.35e-05 | AAAAGTAAAACTTGCT |
AAAAGTAAAACTTGCT | MEME-10 | chr5 | + | 171392915 | 171392930 | 2.83e-10 | 2.35e-05 | AAAAGTAAAACTtgct |
AAAAGTAAAACTTGCT | MEME-10 | chr10 | + | 124867969 | 124867984 | 1.02e-08 | 0.000736 | ACAAGTAAAACTTGCT |
AAAAGTAAAACTTGCT | MEME-10 | chr12 | + | 112507161 | 112507176 | 3.79e-06 | 0.244 | AAAAGCAGAAGTTGCT |
AAAAGTAAAACTTGCT | MEME-10 | chr15 | - | 89135663 | 89135678 | 1.43e-05 | 0.831 | TAAAGGAAAGCCTGCT |
AAAAGTAAAACTTGCT | MEME-10 | chr17 | + | 58476056 | 58476071 | 3.32e-05 | 0.841 | aaaCCTGCAACTTGCT |
AAAAGTAAAACTTGCT | MEME-10 | chr12 | - | 65855876 | 65855891 | 3.32e-05 | 0.841 | AAAAGAAAAAACAGCT |
AAAAGTAAAACTTGCT | MEME-10 | chr4 | + | 68337015 | 68337030 | 3.32e-05 | 0.841 | AAAAGTAGTACCTGAT |
AAAAGTAAAACTTGCT | MEME-10 | chr15 | - | 71252724 | 71252739 | 3.32e-05 | 0.841 | AAAAGTTAAATGAGCT |
AAAAGTAAAACTTGCT | MEME-10 | chr10 | - | 75390249 | 75390264 | 3.32e-05 | 0.841 | AAAAGCAAAGCTGGGT |
AAAAGTAAAACTTGCT | MEME-10 | chr9 | - | 84604224 | 84604239 | 3.32e-05 | 0.841 | ACAAGAAAAACATTCT |
AAAAGTAAAACTTGCT | MEME-10 | chr1 | + | 92074462 | 92074477 | 3.32e-05 | 0.841 | AAGACTGCAACTTGCT |
AAAAGTAAAACTTGCT | MEME-10 | chr2 | + | 113226402 | 113226417 | 3.32e-05 | 0.841 | AAAATTGAGACTTGCC |
AAAAGTAAAACTTGCT | MEME-10 | chr9 | + | 128694044 | 128694059 | 3.32e-05 | 0.841 | aaaagaaAATTTGGCT |
AAAAGTAAAACTTGCT | MEME-10 | chr10 | - | 7388518 | 7388533 | 4.23e-05 | 0.841 | AAAAAAAAAATTAGCT |
AAAAGTAAAACTTGCT | MEME-10 | chr10 | + | 7505212 | 7505227 | 4.23e-05 | 0.841 | ACAAGTAAAAATTTCA |
AAAAGTAAAACTTGCT | MEME-10 | chr6 | - | 10415265 | 10415280 | 4.23e-05 | 0.841 | AAAGGGAAAAGTTTCT |
AAAAGTAAAACTTGCT | MEME-10 | chr7 | + | 27705347 | 27705362 | 4.23e-05 | 0.841 | agaaataaaatatgct |
AAAAGTAAAACTTGCT | MEME-10 | chr6 | + | 43352124 | 43352139 | 4.23e-05 | 0.841 | aagagcaaaacttcgt |
AAAAGTAAAACTTGCT | MEME-10 | chr1 | + | 51840154 | 51840169 | 4.23e-05 | 0.841 | AAAAATAAAGCTTGAG |
AAAAGTAAAACTTGCT | MEME-10 | chr18 | - | 55589546 | 55589561 | 4.23e-05 | 0.841 | ATAAGAAAAAGTTGTT |
AAAAGTAAAACTTGCT | MEME-10 | chr15 | - | 81117537 | 81117552 | 4.23e-05 | 0.841 | AAAAAAAAAAGTAGCT |
AAAAGTAAAACTTGCT | MEME-10 | chr10 | + | 120507406 | 120507421 | 4.23e-05 | 0.841 | AACAGTAAACATTTCT |
AAAAGTAAAACTTGCT | MEME-10 | chr10 | - | 123380874 | 123380889 | 4.23e-05 | 0.841 | AATTCTAAAACTTGTT |
AAAAGTAAAACTTGCT | MEME-10 | chr10 | + | 7388167 | 7388182 | 4.35e-05 | 0.841 | aaaacaaaaaattcct |
AAAAGTAAAACTTGCT | MEME-10 | chr17 | + | 7563427 | 7563442 | 8.97e-05 | 1 | CATCGAAAAACCTGCT |
AAAAGTAAAACTTGCT | MEME-10 | chr6 | + | 32978136 | 32978151 | 8.97e-05 | 1 | ACATGAACAACTGGCT |
AAAAGTAAAACTTGCT | MEME-10 | chr7 | - | 42237771 | 42237786 | 8.97e-05 | 1 | AAAAGTAAGGCGAGCA |
AAAAGTAAAACTTGCT | MEME-10 | chr12 | + | 62950614 | 62950629 | 8.97e-05 | 1 | catagtaatactggcc |
AAAAGTAAAACTTGCT | MEME-10 | chr10 | - | 71420791 | 71420806 | 8.97e-05 | 1 | GACTGCCAAACTTGCT |
AAAAGTAAAACTTGCT | MEME-10 | chr15 | + | 78090797 | 78090812 | 8.97e-05 | 1 | ccaaggaaatctggct |
AAAAGTAAAACTTGCT | MEME-10 | chr17 | + | 78934370 | 78934385 | 8.97e-05 | 1 | AGAAGGGAGACTGGCT |
AAAAGTAAAACTTGCT | MEME-10 | chr10 | + | 123380570 | 123380585 | 8.97e-05 | 1 | AGAAGGAAGCCTTGCC |
AAAAGTAAAACTTGCT | MEME-10 | chr1 | - | 235214133 | 235214148 | 8.97e-05 | 1 | ACACGTGGAACCTGCT |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF513.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_5 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF513.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif AAAAGTAAAACTTGCT /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF513.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF513.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF513.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF513.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_5 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF513.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF513.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF513.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF513.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.