# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF513.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF513.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF513.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF513.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 17:44:25 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF513.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 17:44:26 PDT 2018) # host: wotan # when: Thu May 10 18:46:21 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.262 C 0.242 G 0.237 T 0.259 MOTIF ABCACCAT DREME-1 # Word RC Word Pos Neg P-value E-value # BEST ABCACCAT ATGGTGVT 290 61 1.1e-050 2.3e-046 # ATCACCAT ATGGTGAT 205 49 9.2e-030 1.9e-025 # ACCACCAT ATGGTGGT 123 13 2.2e-026 4.5e-022 # AGCACCAT ATGGTGCT 7 0 7.7e-003 1.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 793 E= 2.3e-046 1.000000 0.000000 0.000000 0.000000 0.000000 0.266078 0.007566 0.726356 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF GAWGARGA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GAWGARGA TCYTCWTC 434 164 1.3e-056 2.7e-052 # GAAGAGGA TCCTCTTC 248 66 2.1e-034 4.3e-030 # GAAGAAGA TCTTCTTC 179 53 4.9e-021 1.0e-016 # GATGAAGA TCTTCATC 116 26 1.0e-016 2.0e-012 # GATGAGGA TCCTCATC 100 38 1.1e-008 2.1e-004 letter-probability matrix: alength= 4 w= 8 nsites= 1192 E= 2.7e-052 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750839 0.000000 0.000000 0.249161 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.428691 0.000000 0.571309 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCTCSTCC DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CCTCSTCC GGASGAGG 191 42 3.6e-029 6.9e-025 # CCTCCTCC GGAGGAGG 185 41 5.9e-028 1.1e-023 # CCTCGTCC GGACGAGG 15 1 2.4e-004 4.6e+000 letter-probability matrix: alength= 4 w= 8 nsites= 315 E= 6.9e-025 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.955556 0.044444 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ACYRTCAT DREME-4 # Word RC Word Pos Neg P-value E-value # BEST ACYRTCAT ATGAYRGT 147 41 6.4e-018 1.2e-013 # ACCATCAT ATGATGGT 111 34 3.0e-012 5.7e-008 # ACTATCAT ATGATAGT 37 5 1.4e-007 2.8e-003 # ACCGTCAT ATGACGGT 16 1 1.3e-004 2.4e+000 # ACTGTCAT ATGACAGT 15 2 1.1e-003 2.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 231 E= 1.2e-013 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.753247 0.000000 0.246753 0.861472 0.000000 0.138528 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF ACHACC DREME-5 # Word RC Word Pos Neg P-value E-value # BEST ACHACC GGTDGT 92 26 5.2e-011 9.8e-007 # ACCACC GGTGGT 75 26 1.9e-007 3.5e-003 # ACTACC GGTAGT 18 0 3.4e-006 6.3e-002 # ACAACC GGTTGT 8 0 3.8e-003 7.2e+001 letter-probability matrix: alength= 4 w= 6 nsites= 124 E= 9.8e-007 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.072581 0.790323 0.000000 0.137097 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ARCAGCA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST ARCAGCA TGCTGYT 30 3 5.2e-007 9.6e-003 # AGCAGCA TGCTGCT 23 3 3.7e-005 6.9e-001 # AACAGCA TGCTGTT 9 0 1.9e-003 3.5e+001 letter-probability matrix: alength= 4 w= 7 nsites= 31 E= 9.6e-003 1.000000 0.000000 0.000000 0.000000 0.258065 0.000000 0.741935 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AYTATC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST AYTATC GATART 90 38 6.9e-007 1.3e-002 # ATTATC GATAAT 67 30 5.9e-005 1.1e+000 # ACTATC GATAGT 26 8 1.3e-003 2.4e+001 letter-probability matrix: alength= 4 w= 6 nsites= 111 E= 1.3e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.270270 0.000000 0.729730 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AMGATGAT DREME-8 # Word RC Word Pos Neg P-value E-value # BEST AMGATGAT ATCATCKT 71 27 2.1e-006 3.8e-002 # ACGATGAT ATCATCGT 43 16 2.1e-004 3.9e+000 # AAGATGAT ATCATCTT 31 11 1.2e-003 2.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 88 E= 3.8e-002 1.000000 0.000000 0.000000 0.000000 0.375000 0.625000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF CSGCCGC DREME-9 # Word RC Word Pos Neg P-value E-value # BEST CSGCCGC GCGGCSG 22 1 2.4e-006 4.3e-002 # CCGCCGC GCGGCGG 10 0 9.4e-004 1.7e+001 # CGGCCGC GCGGCCG 12 1 1.6e-003 3.0e+001 letter-probability matrix: alength= 4 w= 7 nsites= 26 E= 4.3e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 120.19 seconds