# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF510.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF510.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF510.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF510.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 17:44:25 PDT 2018) # negatives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF510.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 17:44:25 PDT 2018) # host: indra # when: Thu May 10 18:24:14 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.338 C 0.167 G 0.168 T 0.328 MOTIF CRTCTYA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CRTCTYA TRAGAYG 219 23 2.5e-050 6.9e-046 # CATCTTA TAAGATG 139 13 2.2e-031 6.1e-027 # CGTCTCA TGAGACG 33 0 7.4e-011 2.1e-006 # CATCTCA TGAGATG 35 7 5.4e-006 1.5e-001 # CGTCTTA TAAGACG 14 3 6.1e-003 1.7e+002 letter-probability matrix: alength= 4 w= 7 nsites= 223 E= 6.9e-046 0.000000 1.000000 0.000000 0.000000 0.789238 0.000000 0.210762 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.304933 0.000000 0.695067 1.000000 0.000000 0.000000 0.000000 MOTIF TAAATAAA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST TAAATAAA TTTATTTA 244 54 4.8e-039 1.3e-034 # TAAATAAA TTTATTTA 244 54 4.8e-039 1.3e-034 letter-probability matrix: alength= 4 w= 8 nsites= 1110 E= 1.3e-034 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GARGRAAC DREME-3 # Word RC Word Pos Neg P-value E-value # BEST GARGRAAC GTTYCYTC 132 7 1.7e-034 4.6e-030 # GAGGAAAC GTTTCCTC 56 2 1.7e-015 4.6e-011 # GAGGGAAC GTTCCCTC 51 1 4.0e-015 1.1e-010 # GAAGAAAC GTTTCTTC 15 3 3.6e-003 9.7e+001 # GAAGGAAC GTTCCTTC 10 1 5.7e-003 1.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 133 E= 4.6e-030 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.187970 0.000000 0.812030 0.000000 0.000000 0.000000 1.000000 0.000000 0.533835 0.000000 0.466165 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GTCTCR DREME-4 # Word RC Word Pos Neg P-value E-value # BEST GTCTCR YGAGAC 111 18 1.4e-019 3.8e-015 # GTCTCA TGAGAC 92 17 4.7e-015 1.3e-010 # GTCTCG CGAGAC 30 2 8.9e-008 2.4e-003 letter-probability matrix: alength= 4 w= 6 nsites= 129 E= 3.8e-015 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.767442 0.000000 0.232558 0.000000 MOTIF CTCTGTY DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CTCTGTY RACAGAG 66 10 3.7e-012 1.0e-007 # CTCTGTC GACAGAG 36 5 2.6e-007 7.0e-003 # CTCTGTT AACAGAG 31 5 4.9e-006 1.3e-001 letter-probability matrix: alength= 4 w= 7 nsites= 70 E= 1.0e-007 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.542857 0.000000 0.457143 MOTIF CAAAGGA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CAAAGGA TCCTTTG 33 2 1.2e-008 3.3e-004 # CAAAGGA TCCTTTG 33 2 1.2e-008 3.3e-004 letter-probability matrix: alength= 4 w= 7 nsites= 33 E= 3.3e-004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AACCAST DREME-7 # Word RC Word Pos Neg P-value E-value # BEST AACCAST ASTGGTT 36 4 6.0e-008 1.6e-003 # AACCAGT ACTGGTT 24 2 4.3e-006 1.1e-001 # AACCACT AGTGGTT 12 2 6.2e-003 1.7e+002 letter-probability matrix: alength= 4 w= 7 nsites= 36 E= 1.6e-003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF GATTCCWC DREME-8 # Word RC Word Pos Neg P-value E-value # BEST GATTCCWC GWGGAATC 30 2 8.9e-008 2.4e-003 # GATTCCAC GTGGAATC 22 2 1.5e-005 4.1e-001 # GATTCCTC GAGGAATC 8 0 3.8e-003 1.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 2.4e-003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.733333 0.000000 0.000000 0.266667 0.000000 1.000000 0.000000 0.000000 MOTIF CCTCAY DREME-9 # Word RC Word Pos Neg P-value E-value # BEST CCTCAY RTGAGG 103 46 3.6e-007 9.7e-003 # CCTCAC GTGAGG 56 17 1.3e-006 3.6e-002 # CCTCAT ATGAGG 53 31 8.5e-003 2.3e+002 letter-probability matrix: alength= 4 w= 6 nsites= 120 E= 9.7e-003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.550000 0.000000 0.450000 # Stopping reason: E-value threshold exceeded # Running time: 43.18 seconds