# WARNING: this file is not sorted! # db id alt consensus E-value adj_p-value log_adj_p-value bin_location bin_width total_width sites_in_bin total_sites p_success p-value mult_tests 1 AATAAATAAATAAATAAATAAATAAATAAATA MEME-1 AATAAATAAATAAATAAATAAATAAATAAATA 2.5e-185 3.3e-188 -431.70 0.0 31 469 187 212 0.06610 1.4e-190 234 1 GAGGRAACYAVTAAGA MEME-2 GAGGRAACYAVTAAGA 4.3e-149 5.7e-152 -348.25 0.0 47 485 234 337 0.09691 2.4e-154 242 1 WTTTTGAGACRGAGTCTYRCTC MEME-3 WTTTTGAGACRGAGTCTYRCTC 4.2e-041 5.5e-044 -99.60 0.0 101 479 157 248 0.21086 2.3e-046 239 1 AATAAATAAAWWAAAW MEME-4 AATAAATAAAWWAAAW 2.8e-090 3.7e-093 -212.83 0.0 43 485 206 441 0.08866 1.5e-095 242 1 GTTACAACYRGTTCAA MEME-5 GTTACAACYRGTTCAA 7.3e-027 9.8e-030 -66.80 0.0 71 485 69 106 0.14639 4.0e-032 242 1 YTGAGAAAAYACTAATTCAGTACAACCTGAA MEME-6 YTGAGAAAAYACTAATTCAGTACAACCTGAA 6.0e-010 8.0e-013 -27.86 0.0 124 470 25 25 0.26383 3.4e-015 234 1 AGACTCYGTCTCAAAA MEME-7 AGACTCYGTCTCAAAA 3.8e-035 5.0e-038 -85.89 0.0 97 485 137 225 0.20000 2.1e-040 242 1 GTYAAAGATTTTATTYAACTCATTAATTAAT MEME-8 GTYAAAGATTTTATTYAACTCATTAATTAAT 8.3e-033 1.1e-035 -80.49 0.0 94 470 73 86 0.20000 4.7e-038 234 1 GTGTTAYAAYTGATGGTGGTAAAAATATRTRTGGARCAGAAAA MEME-9 GTGTTAYAAYTGATGGTGGTAAAAATATRTRTGGARCAGAAAA 2.9e-003 3.9e-006 -12.46 0.0 96 458 13 14 0.20961 1.7e-008 228 1 TTCTTTRRATTCTCCT MEME-10 TTCTTTRRATTCTCCT 8.5e-014 1.1e-016 -36.72 0.0 93 485 82 163 0.19175 4.7e-019 242 2 CRTCTYA DREME-1 CATCTTA 2.1e-083 2.8e-086 -197.00 0.0 80 494 197 283 0.16194 1.1e-088 246 2 TAAATAAA DREME-2 TAAATAAA 6.1e-133 8.2e-136 -311.05 0.0 53 493 206 275 0.10751 3.3e-138 246 2 GARGRAAC DREME-3 GAGGRAAC 3.0e-055 4.0e-058 -132.17 0.0 41 493 100 176 0.08316 1.6e-060 246 2 GTCTCR DREME-4 GTCTCA 1.4e-007 1.9e-010 -22.40 0.0 93 495 102 273 0.18788 7.5e-013 247 2 CTCTGTY DREME-5 CTCTGTY 7.4e-010 9.8e-013 -27.65 0.0 116 494 104 216 0.23482 4.0e-015 246 2 CAAAGGA DREME-6 CAAAGGA 1.9e-001 2.5e-004 -8.30 0.0 88 494 32 77 0.17814 1.0e-006 246 2 AACCAST DREME-7 AACCAST 5.2e-009 6.9e-012 -25.70 0.0 48 494 46 138 0.09717 2.8e-014 246 2 GATTCCWC DREME-8 GATTCCAC 1.0e-002 1.4e-005 -11.21 0.0 31 493 35 198 0.06288 5.5e-008 246 2 CCTCAY DREME-9 CCTCAY 5.8e-034 7.8e-037 -83.14 0.0 47 495 117 320 0.09495 3.1e-039 247 3 M0104_1.02 (ARID3B)_(Mus_musculus)_(DBD_0.99) AWATTAATWAN 8.6e-020 1.1e-022 -50.52 0.0 58 490 154 548 0.11837 4.7e-025 244 3 M0398_1.02 (ZSCAN10)_(Mus_musculus)_(DBD_0.82) NGDRAGTGCNN 6.4e-003 8.4e-006 -11.68 0.0 156 490 233 542 0.31837 3.5e-008 244 3 M0436_1.02 (ZNF35)_(Mus_musculus)_(DBD_0.96) TTRTTKDHYN 2.3e-009 3.1e-012 -26.50 0.0 49 491 121 589 0.09980 1.3e-014 245 3 M0442_1.02 (ZBTB3)_(Mus_musculus)_(DBD_1.00) NNTGCAGYG 7.1e0000 9.5e-003 -4.66 0.0 300 492 408 593 0.60976 3.9e-005 245 3 M0629_1.02 DMRT3 MATGTATCAAN 3.7e0000 4.9e-003 -5.32 0.0 92 490 138 528 0.18776 2.0e-005 244 3 M0633_1.02 DMRT2 KAATKTATWN 8.8e-028 1.2e-030 -68.92 0.0 45 491 151 568 0.09165 4.8e-033 245 3 M0714_1.02 (ENSG00000235187)_(Mus_musculus)_(DBD_1.00) NDNMGGAWRY 4.7e-001 6.2e-004 -7.39 0.0 31 491 67 580 0.06314 2.5e-006 245 3 M0719_1.02 FOXG1 RTAAACAW 1.6e-002 2.1e-005 -10.77 0.0 35 493 77 572 0.07099 8.6e-008 246 3 M0728_1.02 (FOXJ1)_(Mus_musculus)_(DBD_1.00) NRTAAACAAANN 1.4e-011 1.8e-014 -31.62 0.0 37 489 106 582 0.07566 7.6e-017 244 3 M0737_1.02 (FOXB2)_(Mus_musculus)_(DBD_0.94) WRWGTAAAYA 3.5e-037 4.7e-040 -90.56 0.0 35 491 148 585 0.07128 1.9e-042 245 3 M0747_1.02 (FOXL2)_(Mus_musculus)_(DBD_0.70) WNNRTAAAYA 7.6e-025 1.0e-027 -62.15 0.0 61 491 178 589 0.12424 4.1e-030 245 3 M0892_1.02 EMX1 NYTAATKAVN 1.9e0000 2.6e-003 -5.96 0.0 81 491 133 565 0.16497 1.1e-005 245 3 M0896_1.02 VENTX TTAATTAG 2.2e-002 2.9e-005 -10.44 0.0 59 493 100 498 0.11968 1.2e-007 246 3 M0897_1.02 HOXB13 DTTWAYDRBN 9.0e0000 1.2e-002 -4.42 0.0 61 491 100 546 0.12424 4.9e-005 245 3 M0905_1.02 (HOXA4)_(Mus_musculus)_(DBD_1.00) HTAATKRNN 1.2e-002 1.6e-005 -11.05 0.0 70 492 102 423 0.14228 6.5e-008 245 3 M0906_1.02 (VTN)_(Mus_musculus)_(DBD_0.79) NMTTAATTAR 1.4e-006 1.8e-009 -20.13 0.0 57 491 106 464 0.11609 7.4e-012 245 3 M0949_1.02 (AC012531.1)_(Mus_musculus)_(DBD_1.00) NTAATDR 5.9e-004 7.9e-007 -14.06 0.0 66 494 87 346 0.13360 3.2e-009 246 3 M0999_1.02 (NKX6-1)_(Mus_musculus)_(DBD_1.00) NWTAATKRN 3.0e-002 4.0e-005 -10.12 0.0 58 492 101 515 0.11789 1.6e-007 245 3 M1012_1.02 (HOXB4)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 8.2e-002 1.1e-004 -9.12 0.0 70 492 104 453 0.14228 4.5e-007 245 3 M1025_1.02 (HOXD1)_(Mus_musculus)_(DBD_0.98) NNYVATTA 5.8e-002 7.7e-005 -9.47 0.0 61 493 75 337 0.12373 3.1e-007 246 3 M1070_1.02 (HOXC5)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 9.5e-002 1.3e-004 -8.98 0.0 68 492 97 425 0.13821 5.2e-007 245 3 M1071_1.02 (HOXD3)_(Mus_musculus)_(DBD_1.00) NTAATKRN 7.0e-002 9.4e-005 -9.28 0.0 63 493 100 476 0.12779 3.8e-007 246 3 M1163_1.02 (NKX6-3)_(PBM_CONSTRUCTS)_(DBD_1.00) NWTAATKRN 2.6e-004 3.5e-007 -14.87 0.0 58 492 102 474 0.11789 1.4e-009 245 3 M1582_1.02 (HMG20B)_(Mus_musculus)_(DBD_0.94) NWAWATAATWN 1.9e-011 2.5e-014 -31.31 0.0 48 490 117 534 0.09796 1.0e-016 244 3 M2283_1.02 FOXP1 HWWADGTAAACAAAR 2.1e-021 2.8e-024 -54.24 0.0 58 486 164 578 0.11934 1.2e-026 242 3 M2289_1.02 JUN DDRATGATGTMAT 4.3e-009 5.7e-012 -25.90 0.0 52 488 111 489 0.10656 2.3e-014 243 3 M2323_1.02 ZBTB33 SARVTCTCGCGAGAV 3.4e0000 4.5e-003 -5.40 0.0 314 486 224 295 0.64609 1.9e-005 242 3 M2385_1.02 FOXP2 RWGTAAACAVR 2.7e-008 3.6e-011 -24.05 0.0 54 490 123 567 0.11020 1.5e-013 244 3 M4452_1.02 BATF TYYYRWWATGASTCA 8.9e-001 1.2e-003 -6.74 0.0 100 486 154 538 0.20576 4.9e-006 242 3 M4454_1.02 BRCA1 ARVTCTCGCGAGARB 1.3e-002 1.7e-005 -10.95 0.0 322 486 185 225 0.66255 7.2e-008 242 3 M4551_1.02 ZNF274 YTCAYACTGGAGAGAAA 9.9e-002 1.3e-004 -8.94 0.0 332 484 239 293 0.68595 5.4e-007 241 3 M4567_1.02 FOXA2 NMWRWGTAAACANNN 1.0e-002 1.4e-005 -11.19 0.0 62 486 120 582 0.12757 5.7e-008 242 3 M4698_1.02 HNF4A BTGRMCTTTGVHCYB 4.0e0000 5.3e-003 -5.24 0.0 290 486 377 553 0.59671 2.2e-005 242 3 M5287_1.02 ALX4 HTAATYNAATTAN 4.5e-045 6.0e-048 -108.74 0.0 40 488 165 544 0.08197 2.4e-050 243 3 M5291_1.02 ARX YTAATTNRATTAN 2.9e-072 3.9e-075 -171.33 0.0 40 488 194 512 0.08197 1.6e-077 243 3 M5293_1.02 ATF7 NKATGACGTCATHN 5.3e0000 7.0e-003 -4.96 0.0 157 487 92 198 0.32238 2.9e-005 243 3 M5302_1.02 BATF3 TGATGACGTCATCA 5.3e0000 7.0e-003 -4.96 0.0 157 487 51 96 0.32238 2.9e-005 243 3 M5322_1.02 CPEB1 TTTTTATT 2.5e-011 3.4e-014 -31.02 0.0 91 493 190 579 0.18458 1.4e-016 246 3 M5335_1.02 CUX2 ATCGATAHNWTTATYGAT 1.4e-106 1.9e-109 -250.34 0.0 41 483 177 291 0.08489 7.9e-112 241 3 M5348_1.02 DRGX NTAATYHAATTAN 2.1e-035 2.8e-038 -86.46 0.0 56 488 175 520 0.11475 1.2e-040 243 3 M5425_1.02 ETV6 CCGGAASCGGAAGTR 1.7e0000 2.2e-003 -6.11 0.0 276 486 224 327 0.56790 9.2e-006 242 3 M5446_1.02 FOXD4L2 RTAAACA 6.4e-023 8.6e-026 -57.72 0.0 50 494 154 589 0.10121 3.5e-028 246 3 M5460_1.02 FOXL1 RTAAACA 1.4e-040 1.9e-043 -98.36 0.0 50 494 184 584 0.10121 7.8e-046 246 3 M5502_1.02 GSX1 NBTAATKRSN 1.8e-003 2.3e-006 -12.96 0.0 59 491 112 544 0.12016 9.6e-009 245 3 M5503_1.02 GSX2 DYTAATKRVN 4.1e-005 5.5e-008 -16.72 0.0 61 491 121 545 0.12424 2.2e-010 245 3 M5517_1.02 HMBOX1 MYTAGTTAMS 6.1e-001 8.1e-004 -7.12 0.0 65 491 107 525 0.13238 3.3e-006 245 3 M5544_1.02 HOXC10 DTTTWATKDB 8.3e-007 1.1e-009 -20.62 0.0 77 491 157 584 0.15682 4.5e-012 245 3 M5547_1.02 HOXC11 DRTCRTWAAAH 4.1e-003 5.4e-006 -12.13 0.0 96 490 145 479 0.19592 2.2e-008 244 3 M5555_1.02 HOXD11 RTCGTAAAAH 1.6e-004 2.1e-007 -15.37 0.0 71 491 119 472 0.14460 8.6e-010 245 3 M5584_1.02 ISX YTAATCTAATTAR 1.6e-058 2.2e-061 -139.69 0.0 64 488 210 464 0.13115 8.9e-064 243 3 M5604_1.02 LMX1A YTAATTAA 2.3e-005 3.0e-008 -17.31 0.0 69 493 123 496 0.13996 1.2e-010 246 3 M5605_1.02 LMX1B TTAATTRN 1.3e0000 1.7e-003 -6.37 0.0 69 493 118 568 0.13996 7.0e-006 246 3 M5623_1.02 MEOX1 VSTAATTAHC 9.7e-001 1.3e-003 -6.65 0.0 59 491 98 518 0.12016 5.3e-006 245 3 M5672_1.02 NOTO NBTAATTARN 9.4e-001 1.2e-003 -6.69 0.0 67 491 115 558 0.13646 5.1e-006 245 3 M5697_1.02 ONECUT3 DTTATYGATTTTTY 2.2e-047 2.9e-050 -114.08 0.0 63 487 198 485 0.12936 1.2e-052 243 3 M5711_1.02 PAX9 KKCASTCAWGCGTGACS 4.7e-001 6.3e-004 -7.37 0.0 368 484 183 206 0.76033 2.6e-006 241 3 M5714_1.02 PHOX2A TAATYYAATTA 3.6e-023 4.8e-026 -58.31 0.0 54 490 152 536 0.11020 1.9e-028 244 3 M5715_1.02 PHOX2B TAATYYAATTA 2.1e-018 2.8e-021 -47.34 0.0 54 490 143 538 0.11020 1.1e-023 244 3 M5740_1.02 POU4F1 ATGMATAATTAATG 2.4e-082 3.2e-085 -194.56 0.0 43 487 218 533 0.08830 1.3e-087 243 3 M5743_1.02 POU4F3 RTGMATWATTAATGAV 2.6e-081 3.5e-084 -192.16 0.0 49 485 227 523 0.10103 1.5e-086 242 3 M5746_1.02 POU6F2 WTAATKAGST 6.5e-002 8.6e-005 -9.36 0.0 71 491 121 539 0.14460 3.5e-007 245 3 M5753_1.02 PROX1 YAAGACGYCTTA 6.2e-007 8.2e-010 -20.92 0.0 91 489 110 314 0.18609 3.4e-012 244 3 M5941_1.02 UNCX NTAATYBAATTAN 1.1e-004 1.5e-007 -15.71 0.0 64 488 127 562 0.13115 6.2e-010 243 3 M5945_1.02 VAX2 YTAATTAN 3.3e0000 4.4e-003 -5.42 0.0 81 493 131 563 0.16430 1.8e-005 246 3 M5998_1.02 (CREB5)_(Mus_musculus)_(DBD_1.00) DRTGACGTCATN 1.5e-004 2.0e-007 -15.42 0.0 49 489 67 303 0.10020 8.3e-010 244 3 M6114_1.02 FOXA1 WAWGYAAAYA 1.7e-032 2.3e-035 -79.76 0.0 65 491 199 583 0.13238 9.4e-038 245 3 M6141_1.02 ALX1 TAATBYAATTAY 1.1e0000 1.5e-003 -6.51 0.0 89 489 143 556 0.18200 6.1e-006 244 3 M6147_1.02 ARID3A TWWAWTTTGATWYYVWTTAATH 7.7e-067 1.0e-069 -158.86 0.0 57 479 224 515 0.11900 4.3e-072 239 3 M6166_1.02 CDC5L RWTAYRTTAAMWCVC 2.5e-002 3.4e-005 -10.30 0.0 56 486 97 495 0.11523 1.4e-007 242 3 M6222_1.02 ETV4 SAGGAAGT 1.2e-001 1.6e-004 -8.75 0.0 33 493 73 593 0.06694 6.4e-007 246 3 M6234_1.02 FOXA3 RVWAARYAAAYAD 1.9e-031 2.5e-034 -77.36 0.0 58 488 184 581 0.11885 1.0e-036 243 3 M6235_1.02 FOXC1 CYWAAGTAAACAWHG 4.7e-009 6.3e-012 -25.79 0.0 56 486 120 513 0.11523 2.6e-014 242 3 M6237_1.02 FOXD3 AAACAAACA 4.1e-030 5.5e-033 -74.28 0.0 40 492 147 583 0.08130 2.2e-035 245 3 M6238_1.02 FOXF1 WAAATAAACAW 3.9e-040 5.2e-043 -97.36 0.0 76 490 228 567 0.15510 2.1e-045 244 3 M6239_1.02 FOXF2 HWADGTAAACA 5.0e-030 6.6e-033 -74.10 0.0 54 490 172 570 0.11020 2.7e-035 244 3 M6241_1.02 FOXJ2 WAAAYAAAYA 2.5e-060 3.3e-063 -143.88 0.0 35 491 180 578 0.07128 1.3e-065 245 3 M6242_1.02 FOXJ3 TAAACAWWAAMMA 2.0e-015 2.7e-018 -40.45 0.0 50 488 133 557 0.10246 1.1e-020 243 3 M6244_1.02 FOXM1 RWAAWCAMWCAAV 4.1e-014 5.5e-017 -37.44 0.0 56 488 147 593 0.11475 2.3e-019 243 3 M6245_1.02 FOXO1 AAAWWVWAAACAAVHH 5.6e-020 7.5e-023 -50.95 0.0 59 485 163 576 0.12165 3.1e-025 242 3 M6246_1.02 FOXO3 MKGWAAACAARYM 4.6e-016 6.1e-019 -41.95 0.0 54 488 147 587 0.11066 2.5e-021 243 3 M6247_1.02 FOXO4 MRTAAACAA 5.8e-006 7.7e-009 -18.68 0.0 44 492 102 580 0.08943 3.2e-011 245 3 M6250_1.02 FOXQ1 AAATAAACAATD 2.8e-024 3.7e-027 -60.87 0.0 59 489 161 527 0.12065 1.5e-029 244 3 M6259_1.02 GCM1 HWNATGCKGGYMBK 9.6e-001 1.3e-003 -6.67 0.0 45 487 86 568 0.09240 5.2e-006 243 3 M6276_1.02 HINFP DMSHHMGCGGACGTTV 2.6e0000 3.5e-003 -5.66 0.0 299 485 252 347 0.61649 1.4e-005 242 3 M6285_1.02 ONECUT1 WWTATTGATTTWDH 2.7e-042 3.5e-045 -102.35 0.0 61 487 198 534 0.12526 1.5e-047 243 3 M6289_1.02 HOXA9 WCATAAAYYATH 1.5e-016 2.0e-019 -43.04 0.0 67 489 163 555 0.13701 8.3e-022 244 3 M6292_1.02 HOXA5 CATTAATYAR 3.1e-003 4.1e-006 -12.39 0.0 61 491 108 508 0.12424 1.7e-008 245 3 M6296_1.02 HOXB6 KKCATMAATCAWT 1.4e-004 1.8e-007 -15.52 0.0 68 488 99 385 0.13934 7.5e-010 243 3 M6297_1.02 HOXB7 MATYAATCAA 3.6e-064 4.8e-067 -152.70 0.0 57 491 214 500 0.11609 2.0e-069 245 3 M6298_1.02 HOXB8 BMATTAATCAA 6.9e-053 9.2e-056 -126.72 0.0 50 490 186 499 0.10204 3.8e-058 244 3 M6299_1.02 HOXC6 AAAGTAATAAATCAT 1.2e-085 1.6e-088 -202.14 0.0 54 486 209 399 0.11111 6.7e-091 242 3 M6301_1.02 HOXD10 AATTAAARCA 1.3e-004 1.7e-007 -15.61 0.0 95 491 172 574 0.19348 6.8e-010 245 3 M6302_1.02 HOXD13 TCYCTAATAAA 1.9e-001 2.5e-004 -8.28 0.0 64 490 120 594 0.13061 1.0e-006 244 3 M6304_1.02 HOXD9 HMATNAAWYT 9.2e-001 1.2e-003 -6.71 0.0 75 491 125 556 0.15275 5.0e-006 245 3 M6327_1.02 LEF1 CTTTGWW 9.3e0000 1.2e-002 -4.39 0.0 144 494 213 581 0.29150 5.1e-005 246 3 M6329_1.02 LHX3 AAAATTAATTARY 7.9e-048 1.1e-050 -115.08 0.0 74 488 220 502 0.15164 4.3e-053 243 3 M6368_1.02 NFIL3 VKVMRTTACRTAAY 5.8e0000 7.7e-003 -4.87 0.0 89 487 102 381 0.18275 3.2e-005 243 3 M6378_1.02 NKX3-1 WWTAAGTATWTWW 3.7e-062 4.9e-065 -148.08 0.0 44 488 196 541 0.09016 2.0e-067 243 3 M6399_1.02 ONECUT2 DKSWTKWTATKGATTTTWYYT 6.7e-064 8.9e-067 -152.08 0.0 50 480 199 484 0.10417 3.7e-069 239 3 M6413_1.02 PBX2 VMATCAATCAMWTYM 2.5e-010 3.3e-013 -28.74 0.0 46 486 118 576 0.09465 1.4e-015 242 3 M6415_1.02 PDX1 CTAATTACY 1.1e0000 1.5e-003 -6.52 0.0 128 492 168 477 0.26016 6.0e-006 245 3 M6426_1.02 POU3F2 CATRAATWWT 8.9e-043 1.2e-045 -103.45 0.0 57 491 201 579 0.11609 4.8e-048 245 3 M6427_1.02 POU4F2 MARCTCATTAATR 1.8e-005 2.4e-008 -17.53 0.0 80 488 129 454 0.16393 1.0e-010 243 3 M6438_1.02 PROP1 RASHAATTAAHWTVR 2.7e-005 3.5e-008 -17.16 0.0 68 486 134 555 0.13992 1.5e-010 242 3 M6485_1.02 SPIB ARAAASMGGAAS 7.9e-001 1.1e-003 -6.85 0.0 111 489 172 554 0.22699 4.3e-006 244 3 M6510_1.02 TEF TGTTTATRTAAMTK 7.7e-003 1.0e-005 -11.49 0.0 145 487 227 561 0.29774 4.2e-008 243 3 M6546_1.02 ZFHX3 ATTAWTAATTA 5.0e-072 6.7e-075 -170.79 0.0 54 490 220 502 0.11020 2.7e-077 244 ## # Detailed descriptions of columns in this file: # # db: The name of the database (file name) that contains the motif. # id: A name for the motif that is unique in the motif database file. # alt: An alternate name of the motif that may be provided # in the motif database file. # consensus: A consensus sequence computed from the motif. # E-value: The expected number motifs that would have least one. # region as enriched for best matches to the motif as the reported region. # The E-value is the p-value multiplied by the number of motifs in the # input database(s). # adj_p-value: The probability that any tested region would be as enriched for # best matches to this motif as the reported region is. # By default the p-value is calculated by using the one-tailed binomial # test on the number of sequences with a match to the motif # that have their best match in the reported region, corrected for # the number of regions and score thresholds tested. # The test assumes that the probability that the best match in a sequence # falls in the region is the region width divided by the # number of places a motif # can align in the sequence (sequence length minus motif width plus 1). # When CentriMo is run in discriminative mode with a negative # set of sequences, the p-value of a region is calculated # using the Fisher exact test on the # enrichment of best matches in the positive sequences relative # to the negative sequences, corrected # for the number of regions and score thresholds tested. # The test assumes that the probability that the best match (if any) # falls into a given region # is the same for all positive and negative sequences. # log_adj_p-value: Log of adjusted p-value. # bin_location: Location of the center of the most enriched region. # bin_width: The width (in sequence positions) of the most enriched region. # A best match to the motif is counted as being in the region if the # center of the motif falls in the region. # total_width: The window maximal size which can be reached for this motif: # rounded(sequence length - motif length +1)/2 # sites_in_bin: The number of (positive) sequences whose best match to the motif # falls in the reported region. # Note: This number may be less than the number of # (positive) sequences that have a best match in the region. # The reason for this is that a sequence may have many matches that score # equally best. # If n matches have the best score in a sequence, 1/n is added to the # appropriate bin for each match. # total_sites: The number of sequences containing a match to the motif # above the score threshold. # p_success: The probability of falling in the enriched window: # bin width / total width # p-value: The uncorrected p-value before it gets adjusted to the # number of multiple tests to give the adjusted p-value. # mult_tests: This is the number of multiple tests (n) done for this motif. # It was used to correct the original p-value of a region for # multiple tests using the formula: # p' = 1 - (1-p)^n where p is the uncorrected p-value. # The number of multiple tests is the number of regions # considered times the number of score thresholds considered. # It depends on the motif length, sequence length, and the type of # optimizations being done (central enrichment, local enrichment, # score optimization).