# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF501.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF501.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF501.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF501.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:26:29 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF501.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:26:30 PST 2017)
#        host: wotan
#        when: Mon Dec 18 16:55:12 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.186 C 0.313 G 0.318 T 0.182


MOTIF CCKCCKC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CCKCCKC    GMGGMGG        178         92   1.7e-009   5.1e-005
#          CCGCCGC    GCGGCGG         83         34   1.1e-006   3.4e-002
#          CCTCCGC    GCGGAGG         49         22   6.6e-004   2.0e+001
#          CCTCCTC    GAGGAGG         52         25   1.0e-003   3.1e+001
#          CCGCCTC    GAGGCGG         47         22   1.3e-003   4.1e+001

letter-probability matrix: alength= 4 w= 7 nsites= 223 E= 5.1e-005
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.565022 0.434978
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.600897 0.399103
0.000000 1.000000 0.000000 0.000000


MOTIF RCCGGAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     RCCGGAA    TTCCGGY         56         11   4.4e-009   1.4e-004
#          ACCGGAA    TTCCGGT         23          1   1.2e-006   3.7e-002
#          GCCGGAA    TTCCGGC         35         10   9.5e-005   2.9e+000

letter-probability matrix: alength= 4 w= 7 nsites= 59 E= 1.4e-004
0.406780 0.000000 0.593220 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GGAAM DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       GGAAM      KTTCC        251        167   2.3e-007   7.1e-003
#            GGAAC      GTTCC        145         94   1.4e-004   4.4e+000
#            GGAAA      TTTCC        138         89   1.9e-004   5.9e+000

letter-probability matrix: alength= 4 w= 5 nsites= 339 E= 7.1e-003
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.498525 0.501475 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 55.01 seconds