******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF501.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr15:75903745-75904245 1.0000 100 chr17:75784961-75785461 1.0000 100 chr1:228082159-228082659 1.0000 100 chrX:54044002-54044502 1.0000 100 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chr19:39341577-39342077 1.0000 100 chr1:225923848-225924348 1.0000 100 chr1:153634027-153634527 1.0000 100 chr10:93702404-93702904 1.0000 100 chr14:104816009-10481650 1.0000 100 chr1:193121811-193122311 1.0000 100 chr4:177442037-177442537 1.0000 100 chr6:99568413-99568913 1.0000 100 chr5:111092074-111092574 1.0000 100 chr17:30906046-30906546 1.0000 100 chr6:79078192-79078692 1.0000 100 chr12:95217702-95218202 1.0000 100 chr5:139341688-139342188 1.0000 100 chr5:90558384-90558884 1.0000 100 chr19:32405198-32405698 1.0000 100 chr19:36053951-36054451 1.0000 100 chr19:35643377-35643877 1.0000 100 chr15:72473855-72474355 1.0000 100 chr10:73246882-73247382 1.0000 100 chr15:70097553-70098053 1.0000 100 chrX:72276889-72277389 1.0000 100 chr1:229508038-229508538 1.0000 100 chr5:10353237-10353737 1.0000 100 chr3:4986835-4987335 1.0000 100 chr19:41310077-41310577 1.0000 100 chr1:206612153-206612653 1.0000 100 chr7:102572279-102572779 1.0000 100 chr16:30874966-30875466 1.0000 100 chr9:37800484-37800984 1.0000 100 chr19:44259736-44260236 1.0000 100 chr1:224113949-224114449 1.0000 100 chr15:89893890-89894390 1.0000 100 chr7:112790011-112790511 1.0000 100 chr1:244451460-244451960 1.0000 100 chr15:72375756-72376256 1.0000 100 chr12:106357565-10635806 1.0000 100 chr10:47553213-47553713 1.0000 100 chr5:103119885-103120385 1.0000 100 chr4:77075921-77076421 1.0000 100 chr12:49060539-49061039 1.0000 100 chr13:52194185-52194685 1.0000 100 chr15:65610910-65611410 1.0000 100 chr19:36916272-36916772 1.0000 100 chr5:14664175-14664675 1.0000 100 chr1:93078933-93079433 1.0000 100 chr7:100673354-100673854 1.0000 100 chr3:53347416-53347916 1.0000 100 chr1:1375043-1375543 1.0000 100 chr1:235128524-235129024 1.0000 100 chrUn_KI270467v1:2156-26 1.0000 100 chr9:133417906-133418406 1.0000 100 chr5:160008634-160009134 1.0000 100 chr19:34134450-34134950 1.0000 100 chr1:223846118-223846618 1.0000 100 chr12:123601746-12360224 1.0000 100 chr17:40140223-40140723 1.0000 100 chr19:35154681-35155181 1.0000 100 chr17:51153345-51153845 1.0000 100 chr10:72354688-72355188 1.0000 100 chr5:176388742-176389242 1.0000 100 chr13:30617592-30618092 1.0000 100 chr12:82358327-82358827 1.0000 100 chr19:36837952-36838452 1.0000 100 chr1:92831933-92832433 1.0000 100 chr9:133030731-133031231 1.0000 100 chr1:37989836-37990336 1.0000 100 chr19:36572875-36573375 1.0000 100 chr19:38374624-38375124 1.0000 100 chr6:42890427-42890927 1.0000 100 chr19:35881955-35882455 1.0000 100 chr5:40834977-40835477 1.0000 100 chr1:40257838-40258338 1.0000 100 chr1:16644507-16645007 1.0000 100 chr6:131628015-131628515 1.0000 100 chrX:73943998-73944498 1.0000 100 chr1:244970685-244971185 1.0000 100 chr15:65517339-65517839 1.0000 100 chr19:1383532-1384032 1.0000 100 chr1:183471792-183472292 1.0000 100 chr1:226939558-226940058 1.0000 100 chr19:44259537-44260037 1.0000 100 chr12:57112008-57112508 1.0000 100 chrUn_KI270466v1:125-625 1.0000 100 chr12:12266900-12267400 1.0000 100 chr1:163321634-163322134 1.0000 100 chr1:63523061-63523561 1.0000 100 chrUn_KI270467v1:3129-36 1.0000 100 chrUn_KI270467v1:1948-24 1.0000 100 chrUn_KI270467v1:2926-34 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF501.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF501.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF501.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.184 C 0.316 G 0.316 T 0.184 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF501.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background): A 0.186 C 0.314 G 0.314 T 0.186 ******************************************************************************** ******************************************************************************** MOTIF ACACAMACAMAYACAYAMAYAMACAMACAMA MEME-1 width = 31 sites = 35 llr = 839 E-value = 2.2e-160 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACACAMACAMAYACAYAMAYAMACAMACAMA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 92817471737:939:9491848:9491737 pos.-specific C :6:6151625:5:716:6:516:715:5:61 probability G 1:111:1:1:3:1:::::1::::1:::11:1 matrix T :1121:12:1:4:::31::31:23::1221: bits 2.4 2.2 1.9 * * * * 1.7 * * * * * * * * Relative 1.5 * * * * * * * * * * * * Entropy 1.2 * * * * * * * * * * * * * (34.6 bits) 1.0 * * *** * * *** *** *** * * * * 0.7 * * *** * ***************** *** 0.5 *************************** *** 0.2 ******************************* 0.0 ------------------------------- Multilevel ACACACACACACACACACACACACACACACA consensus A T A TCAGT A T A T ATT A TTA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAMACAMAYACAYAMAYAMACAMACAMA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr12:57112008-57112508 + 15 1.96e-17 Tcacaacacc acacacacacacacacacacacacacacaca cacacacaca chr19:35947356-35947856 - 45 1.96e-17 CGACACACAC ACACACACACACACACACACACACACACACA CACGAACAGT chr6:111568239-111568739 - 13 1.96e-17 GTACACACAC ACACACACACACACACACACACACACACACA CACACACACA chr2:169364415-169364915 - 12 1.96e-17 GCACACACAC ACACACACACACACACACACACACACACACA CACACACACA chr6:134052040-134052540 + 15 1.96e-17 GCGCATacac acacacacacacacacacacacacacacaca cacacacaca chr1:21345628-21346128 - 59 1.96e-17 GCGCGCGCAC ACACACACACACACACACACACACACACACA CAAGCAGCTG chr17:73310554-73311054 + 9 1.96e-17 acacacac acacacacacacacacacacacacacacaca cGCACTTCAG chr5:121961486-121961986 + 23 1.96e-17 acacacacac acacacacacacacacacacacacacacaca cacacacaAA chr15:74223468-74223968 + 58 1.96e-17 GCCAGCATac acacacacacacacacacacacacacacaca cacacacacg chr19:35881955-35882455 + 22 1.39e-16 aataaaaaat aaataaataaataaataaataaataaataaa taaaAtccaa chr5:160008634-160009134 + 30 1.39e-16 ataaataaat aaataaataaataaataaataaataaataaa taaataaata chr5:34182251-34182751 + 32 1.39e-16 ACaaataaat aaataaataaataaataaataaataaataaa taaataaaaa chr9:33474197-33474697 - 38 1.39e-16 AAAAATAAAT AAATAAATAAATAAATAAATAAATAAATAAA TAAATAAAAA chr1:6404487-6404987 + 29 1.39e-16 tcaaataaat aaataaataaataaataaataaataaataaa taaataaata chr19:40567075-40567575 + 32 1.39e-16 aaaaataaat aaataaataaataaataaataaataaataaa taaataaaGT chr15:101945846-10194634 - 38 1.39e-16 TAAAATAAAT AAATAAATAAATAAATAAATAAATAAATAAA TAAATAAAAT chr6:73461362-73461862 + 9 2.98e-15 aaataaat aaataaataaataaataaataaataaaaata aaaaataata chr1:201435681-201436181 - 31 5.46e-14 TCACACACAC ACACACACACACACACACACACACACAGGCA CGCGCACACA chr12:990678-991178 - 60 1.25e-13 GAGCGTCCCT GCACACACACACACACTCACACACACACACA CACGACCCCT chr13:75480661-75481161 + 16 1.25e-13 Gcacacgcac gcacacacacacacacacacacacacacacG GCAAGCAAGC chr1:156660143-156660643 - 46 4.30e-13 GCGCGTACAC ACACGCACGCGTACACACACACACACACACA GGCACACGCG chr1:184386540-184387040 + 37 1.85e-12 GTacacacac acacacacctgcccacacacacacacacaca cacacacaca chr1:150235816-150236316 + 16 6.50e-12 acacacacgc acgcacgcgcgcacacacatacacacacaca tacacacaca chr15:70097553-70098053 + 33 9.67e-11 cccaacacac acacacgcgcgcacgcacacacacacacacC AAAAAAAAAA chr19:53979840-53980340 - 27 1.09e-09 TTGCACTCAC GCGCGCGCGCGCACACACACACACACACACA CACACACACG chr17:76671171-76671671 - 12 2.17e-09 CAAGACACAC ACACACACACACACACACACCCTTGCTTTTC ACATTCCCTA chr1:226308675-226309175 + 28 2.49e-09 CCTGGCGCTC ACACAACCCCAGAAACCAACACACAGACACC ATAACAAAGG chrUn_KI270466v1:125-625 - 32 2.82e-08 CAAAATATAT ATTATATACTGTACATAAAATATCAAAATAT CCAAAATATA chrUn_KI270467v1:3129-36 - 15 3.74e-08 CAAAATATAT ATTGTAAACTGTACATAAAATATCAAAGTAG CCAAAATATA chrUn_KI270467v1:2926-34 - 51 8.07e-08 CAAAATAAAT ATTATATACTGTACATAAAATATCCAAATAC TCAAAATATA chr19:36214222-36214722 + 58 9.98e-08 TTACACGTGC ACAGTTGCAGACACCCACACCCAGCCACACA GCCACAAAGA chr18:58781638-58782138 - 35 1.76e-07 CCACACACAT ACAACATCACACGCACACATCATGCACATAA TCACACACCA chr19:36572875-36573375 + 29 9.19e-07 TCTCACACAC ACACACCACAATGACGTCGTAAACAATAGCA CTAACCACCA chrUn_KI270467v1:1948-24 - 28 1.48e-06 CCAAATATAT ATTATATGCTGTACATAATATATTAAAGTTG CCCAAATATA chrUn_KI270467v1:2156-26 - 60 2.99e-06 TATAATAAAC TGTACATAAAATATCAAAGTACTCAAACTAC ATATTATATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAMACAMAYACAYAMAYAMACAMACAMA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:57112008-57112508 2e-17 14_[+1]_55 chr19:35947356-35947856 2e-17 44_[-1]_25 chr6:111568239-111568739 2e-17 12_[-1]_57 chr2:169364415-169364915 2e-17 11_[-1]_58 chr6:134052040-134052540 2e-17 14_[+1]_55 chr1:21345628-21346128 2e-17 58_[-1]_11 chr17:73310554-73311054 2e-17 8_[+1]_61 chr5:121961486-121961986 2e-17 22_[+1]_47 chr15:74223468-74223968 2e-17 57_[+1]_12 chr19:35881955-35882455 1.4e-16 21_[+1]_48 chr5:160008634-160009134 1.4e-16 29_[+1]_40 chr5:34182251-34182751 1.4e-16 31_[+1]_38 chr9:33474197-33474697 1.4e-16 37_[-1]_32 chr1:6404487-6404987 1.4e-16 28_[+1]_41 chr19:40567075-40567575 1.4e-16 31_[+1]_38 chr15:101945846-10194634 1.4e-16 37_[-1]_32 chr6:73461362-73461862 3e-15 8_[+1]_61 chr1:201435681-201436181 5.5e-14 30_[-1]_39 chr12:990678-991178 1.3e-13 59_[-1]_10 chr13:75480661-75481161 1.3e-13 15_[+1]_54 chr1:156660143-156660643 4.3e-13 45_[-1]_24 chr1:184386540-184387040 1.8e-12 36_[+1]_33 chr1:150235816-150236316 6.5e-12 15_[+1]_54 chr15:70097553-70098053 9.7e-11 32_[+1]_37 chr19:53979840-53980340 1.1e-09 26_[-1]_43 chr17:76671171-76671671 2.2e-09 11_[-1]_58 chr1:226308675-226309175 2.5e-09 27_[+1]_42 chrUn_KI270466v1:125-625 2.8e-08 31_[-1]_38 chrUn_KI270467v1:3129-36 3.7e-08 14_[-1]_55 chrUn_KI270467v1:2926-34 8.1e-08 50_[-1]_19 chr19:36214222-36214722 1e-07 57_[+1]_12 chr18:58781638-58782138 1.8e-07 34_[-1]_35 chr19:36572875-36573375 9.2e-07 28_[+1]_41 chrUn_KI270467v1:1948-24 1.5e-06 27_[-1]_42 chrUn_KI270467v1:2156-26 3e-06 59_[-1]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAMACAMAYACAYAMAYAMACAMACAMA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACACAMACAMAYACAYAMAYAMACAMACAMA width=31 seqs=35 chr12:57112008-57112508 ( 15) ACACACACACACACACACACACACACACACA 1 chr19:35947356-35947856 ( 45) ACACACACACACACACACACACACACACACA 1 chr6:111568239-111568739 ( 13) ACACACACACACACACACACACACACACACA 1 chr2:169364415-169364915 ( 12) ACACACACACACACACACACACACACACACA 1 chr6:134052040-134052540 ( 15) ACACACACACACACACACACACACACACACA 1 chr1:21345628-21346128 ( 59) ACACACACACACACACACACACACACACACA 1 chr17:73310554-73311054 ( 9) ACACACACACACACACACACACACACACACA 1 chr5:121961486-121961986 ( 23) ACACACACACACACACACACACACACACACA 1 chr15:74223468-74223968 ( 58) ACACACACACACACACACACACACACACACA 1 chr19:35881955-35882455 ( 22) AAATAAATAAATAAATAAATAAATAAATAAA 1 chr5:160008634-160009134 ( 30) AAATAAATAAATAAATAAATAAATAAATAAA 1 chr5:34182251-34182751 ( 32) AAATAAATAAATAAATAAATAAATAAATAAA 1 chr9:33474197-33474697 ( 38) AAATAAATAAATAAATAAATAAATAAATAAA 1 chr1:6404487-6404987 ( 29) AAATAAATAAATAAATAAATAAATAAATAAA 1 chr19:40567075-40567575 ( 32) AAATAAATAAATAAATAAATAAATAAATAAA 1 chr15:101945846-10194634 ( 38) AAATAAATAAATAAATAAATAAATAAATAAA 1 chr6:73461362-73461862 ( 9) AAATAAATAAATAAATAAATAAATAAAAATA 1 chr1:201435681-201436181 ( 31) ACACACACACACACACACACACACACAGGCA 1 chr12:990678-991178 ( 60) GCACACACACACACACTCACACACACACACA 1 chr13:75480661-75481161 ( 16) GCACACACACACACACACACACACACACACG 1 chr1:156660143-156660643 ( 46) ACACGCACGCGTACACACACACACACACACA 1 chr1:184386540-184387040 ( 37) ACACACACCTGCCCACACACACACACACACA 1 chr1:150235816-150236316 ( 16) ACGCACGCGCGCACACACATACACACACACA 1 chr15:70097553-70098053 ( 33) ACACACGCGCGCACGCACACACACACACACC 1 chr19:53979840-53980340 ( 27) GCGCGCGCGCGCACACACACACACACACACA 1 chr17:76671171-76671671 ( 12) ACACACACACACACACACACCCTTGCTTTTC 1 chr1:226308675-226309175 ( 28) ACACAACCCCAGAAACCAACACACAGACACC 1 chrUn_KI270466v1:125-625 ( 32) ATTATATACTGTACATAAAATATCAAAATAT 1 chrUn_KI270467v1:3129-36 ( 15) ATTGTAAACTGTACATAAAATATCAAAGTAG 1 chrUn_KI270467v1:2926-34 ( 51) ATTATATACTGTACATAAAATATCCAAATAC 1 chr19:36214222-36214722 ( 58) ACAGTTGCAGACACCCACACCCAGCCACACA 1 chr18:58781638-58782138 ( 35) ACAACATCACACGCACACATCATGCACATAA 1 chr19:36572875-36573375 ( 29) ACACACCACAATGACGTCGTAAACAATAGCA 1 chrUn_KI270467v1:1948-24 ( 28) ATTATATGCTGTACATAATATATTAAAGTTG 1 chrUn_KI270467v1:2156-26 ( 60) TGTACATAAAATATCAAAGTACTCAAACTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAMACAMAYACAYAMAYAMACAMACAMA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 12.2535 E= 2.2e-160 225 -1177 -187 -270 29 100 -345 -71 210 -1177 -245 -38 -38 87 -245 29 199 -245 -245 -38 120 79 -1177 -270 188 -245 -146 -38 -38 94 -345 29 188 -65 -146 -1177 62 79 -345 -38 199 -1177 -29 -1177 -1177 79 -345 120 229 -345 -245 -1177 62 113 -1177 -270 225 -187 -345 -1177 -270 94 -345 88 229 -345 -1177 -171 110 94 -1177 -1177 229 -1177 -245 -270 -71 79 -1177 88 210 -187 -1177 -71 110 94 -1177 -1177 210 -1177 -1177 10 -1177 107 -245 62 225 -187 -345 -1177 120 79 -345 -1177 229 -345 -1177 -171 -38 79 -187 29 199 -1177 -245 10 88 87 -1177 -112 199 -113 -187 -270 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAMACAMAYACAYAMAYAMACAMACAMA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 35 E= 2.2e-160 0.885714 0.000000 0.085714 0.028571 0.228571 0.628571 0.028571 0.114286 0.800000 0.000000 0.057143 0.142857 0.142857 0.571429 0.057143 0.228571 0.742857 0.057143 0.057143 0.142857 0.428571 0.542857 0.000000 0.028571 0.685714 0.057143 0.114286 0.142857 0.142857 0.600000 0.028571 0.228571 0.685714 0.200000 0.114286 0.000000 0.285714 0.542857 0.028571 0.142857 0.742857 0.000000 0.257143 0.000000 0.000000 0.542857 0.028571 0.428571 0.914286 0.028571 0.057143 0.000000 0.285714 0.685714 0.000000 0.028571 0.885714 0.085714 0.028571 0.000000 0.028571 0.600000 0.028571 0.342857 0.914286 0.028571 0.000000 0.057143 0.400000 0.600000 0.000000 0.000000 0.914286 0.000000 0.057143 0.028571 0.114286 0.542857 0.000000 0.342857 0.800000 0.085714 0.000000 0.114286 0.400000 0.600000 0.000000 0.000000 0.800000 0.000000 0.000000 0.200000 0.000000 0.657143 0.057143 0.285714 0.885714 0.085714 0.028571 0.000000 0.428571 0.542857 0.028571 0.000000 0.914286 0.028571 0.000000 0.057143 0.142857 0.542857 0.085714 0.228571 0.742857 0.000000 0.057143 0.200000 0.342857 0.571429 0.000000 0.085714 0.742857 0.142857 0.085714 0.028571 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAMACAMAYACAYAMAYAMACAMACAMA MEME-1 regular expression -------------------------------------------------------------------------------- A[CA]A[CT]A[CA]A[CT][AC][CA][AG][CT]A[CA]A[CT]A[CA]A[CT]A[CA][AT][CT]A[CA]A[CT][AT][CA]A -------------------------------------------------------------------------------- Time 552.31 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGMVGVGRMSGCGGMGGMGGV MEME-2 width = 22 sites = 151 llr = 1312 E-value = 1.9e-022 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGMVGVGRMSGCGGMGGMGGV MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1:142:22341322133142:3 pos.-specific C 2314314::4415::5:14:14 probability G 5772494862662691681883 matrix T 1:::1:1::1::12::1:1::1 bits 2.4 2.2 1.9 1.7 Relative 1.5 Entropy 1.2 * * (12.5 bits) 1.0 * * * ** 0.7 * * ** * ** * ** 0.5 ** * ** ** ***** ** 0.2 **** * *************** 0.0 ---------------------- Multilevel GGGCGGGGGAGGCGGCGGCGGC consensus C AC C ACCAAA AA AA A sequence A G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMVGVGRMSGCGGMGGMGGV MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr12:12611677-12612177 + 52 1.42e-09 GTCATggagg gggaggaggaggcggcggcggc gaagggaggC chr1:27321970-27322470 - 63 9.34e-08 CCGCCATCCT GGGCGGGGGTGGCGGCGGCGGC AACAAGAGCA chr15:75368098-75368598 - 44 9.34e-08 GCCGCGGGCA GGGCAGGGGCCGGGGAGGAGGG GGTAGGGAAT chr16:22297193-22297693 - 74 1.43e-07 CCCGC GGGCTGCAGAGACGGCGGCGGC CCGGCTCTCC chr17:45148320-45148820 + 1 2.14e-07 . cgggggaggacgcggaagagga gctgtgggaa chr10:27998261-27998761 + 33 2.60e-07 AGGAGAGGCA GGGAAGCGGCGGGAGAAGTGGA GAGCGGATCC chr17:63621499-63621999 + 1 3.15e-07 . GGGATGGGGCCGCAGAGGTGGC CGCGCGCCGG chr1:173714790-173715290 + 39 3.15e-07 gaggagtgga gggcggagtagacggaggaggC TGCTGCAGAG chr5:71455477-71455977 + 33 4.55e-07 ggcggcggga gagaggaggaggcggcggcggg gcAGTGAAAC chr1:213987975-213988475 - 19 6.49e-07 CAGGGGAGAG GCGAGGAGAGGGAAGAAGAGGA GAAGAAAAGA chr12:69585360-69585860 - 56 9.12e-07 CATGTGCGGA GGGCCGGGGAGACAGAAACGGA GCCTACGACC chr1:220046229-220046729 - 62 1.08e-06 CGGCGCAGGG GCGGAGCGAAGGCTGCGGCGGC GTCGGGTACG chr1:234723934-234724434 + 14 1.73e-06 agagggaggg aggaagggaggagggaggtgga gagagagaga chr19:38831525-38832025 - 37 1.73e-06 CAGTAGACGA AGGCGGCGGCGATGGCGGCGGG GATAGTGGCT chr16:58392272-58392772 - 34 2.02e-06 GTACAAGACG GGGAAGCGGAGACTGGGCAGGA TGGTTGGGGT chr1:184386540-184387040 - 79 2.02e-06 . GGGGCGGGAAGGAGGCGGCAGT GTGTGTGTGT chr6:143511296-143511796 + 64 2.02e-06 GGGCAGGGCA CGgcggcggcggcagcagcagc aacagcaaca chr8:89984183-89984683 - 12 2.02e-06 GGGGACGCTG CGGAAGCGGTCGCAGAAGCGGC GAGTACGCTG chr9:133030731-133031231 + 73 2.35e-06 CCTGCCAGAC GCACAGGGATGGCGGCGGAGGC GGCCGA chr1:120176276-120176776 - 15 3.15e-06 CCACCTCAGC GGGAAGCGGAGACGCAAGCAGC TGGATCTCCG chr13:113296704-11329720 - 59 3.15e-06 TGGGCTGGGT TCGCGGAAAAGGAAGAGGAAGA GTAGTGGCGG chr15:68277485-68277985 - 48 3.15e-06 AGACAGGGCC GGGAGGAGAGGGCGGGAGCGGG AGGGACGCTA chr12:28190332-28190832 + 69 3.64e-06 GCGTGGGTGA GCGGCGCAGCGGCGGCAGCGGA GAGCGAGAGA chr12:2812672-2813172 + 27 4.19e-06 GATCTGTGCA GGGACGGGGCAAGGGAAGTGGA AGAGGCCGCC chr1:155562849-155563349 - 69 4.19e-06 TCCGCTCGCC GCGATCCGGCGGAGGAGGAGGA GCAGAGGGAG chr4:24472607-24473107 + 57 4.81e-06 TGAGCGAGCC GGGATGGAGGCGCAGAGGCAgc gcgagcgggc chr7:149239427-149239927 + 42 4.81e-06 CCTGGCATCA ACAcggcggcggcggcggcggc TTCCAACAGG chr1:15526614-15527114 - 32 4.81e-06 CGCTCGCCTG GGCCTGGGGAGGGGAAAGAGGA GGGGACAAGC chr12:113185234-11318573 + 27 4.81e-06 TTCGGGCCGC GCGCTGGGAACGCAGAAGGGGG CGTGGCCTGA chr10:17201373-17201873 - 65 4.81e-06 CCTAGCTCCG GGGCTGCGGCGGCTGAGGCGCG GGGATGGAGC chr1:109484194-109484694 - 52 5.51e-06 AAGGGGGGTG AGGAAGGGGGCACAGAAGTGGG GTGCGTGGGA chr6:125956694-125957194 + 13 6.30e-06 GAGGAGGTGC GGGACGCGGAGACTGCGCGGGC CCGGTAGCCC chr18:50281154-50281654 - 79 6.30e-06 . GGGAGGAGGGCGAGGCGGGAGG TGCAGGAGGG chr17:73310554-73311054 - 73 6.30e-06 AGAGCT GGGCGGGAGCCGGGGCTGAGGC TGAGCCAGCT chr14:90396803-90397303 + 74 6.30e-06 ACTCGTAGTC AGgcggcggcgcaggcggcggc ggcgg chr12:27710683-27711183 - 27 7.19e-06 GGGACCGGAG TGGCCGAGTAGACGGCAGTGGA GAATGCACGC chr18:50878580-50879080 - 73 7.19e-06 AGAAGT GCAGTGCGGAGGAGGAGGTGGA GCTCCGCCGC chr13:111153219-11115371 + 34 7.19e-06 CCGAAGACTG GACAGGAGGAGGCGGCGGTGGC CGCGCGCGGG chr15:67521220-67521720 - 64 7.19e-06 CTTGATGAAG GGGAAGCAGCCGGTGCGCAGGA CGTGGTAGTT chr7:99465811-99466311 - 17 7.19e-06 AGAGCCACAC TGGGAGAGAAGGAAGCTGCGGA GCTGCCTGCC chr1:93078933-93079433 - 52 8.18e-06 GGCAGGGACT GCGCGGCGAGCGCGGAGGAACA CCGCGCCCTG chr12:49060539-49061039 + 2 9.30e-06 C GAGAGGGGGAGAAAGGAGAAGA GGCGGCCCTA chr1:224113949-224114449 + 19 9.30e-06 cagaggaagg aggcggcggccaaggcgacggc ggTTCCTCTT chr7:102572279-102572779 - 43 9.30e-06 ACTTGGGGTC TGGACGCAACGGCGGCGGGAGC ATGAACGCCC chr7:112790011-112790511 + 45 1.05e-05 CTTCAGCCTG CGACTGAGAACAGGGAGGCGGC ACGCCTTGGG chr19:41310077-41310577 + 47 1.05e-05 GAGGCCGTGG CGACGGCGACGGCGGCGAAGGA ACCCGATAAG chr1:230978931-230979431 - 44 1.05e-05 CACCTGTACT GGCAGGAGGCCGAGGCAGCAGT AGGAGTCGCT chr11:47578712-47579212 - 56 1.05e-05 TTCTTCCGGG CGGACGTGGAGCCGGAAGCGGA GGTTCCGGGC chr1:155017241-155017741 - 7 1.05e-05 CTGCCCTCTG GCCCCGGGGAGGGAGCGGCGGG AACAAG chr12:53501143-53501643 + 43 1.19e-05 GTCACGGTGG CGCCCGCGGGGACGGAGGAGGG AATGAGTGAA chr10:42782510-42783010 - 25 1.19e-05 GCTGACTCGC CGGAGGGAAACAAGAAGGCAGA AAAAAGAGAC chr1:224356754-224357254 + 69 1.19e-05 GCGAACGCCT TGCCGGGGGACACGGCTGAGGG TGGGCCAGTT chr6:28080740-28081240 - 58 1.19e-05 ACTGGATGTT TGGAGGGGGACACGGGGCTGGA CATCTGGATC chr11:116772695-11677319 + 69 1.35e-05 GCTGCCGCCA TGGCAGCGGCGGGGGCAGAGAG ACGGGTCGGC chr6:157323339-157323839 - 32 1.52e-05 CAGATTGCAC AGGAGGAGGCGGTAGCGGAACC TTTCTCCTCC chr12:120446139-12044663 + 45 1.52e-05 GCGACAGTGG TGGCGGCGGCGACGACGGCGCA CTCTGATGTC chr7:97872037-97872537 - 17 1.52e-05 CTGCTCCGGA AGGAAGGGGTGGAGGATGCGGT CTTCAGCCTG chr17:36545475-36545975 + 9 1.52e-05 cggcagct gggaggaggtggtgacggtggc aacggcagcg chr19:39833787-39834287 - 8 1.71e-05 TCAGGTAACG GCGCGGGGACGGGTGGGGCGGC AAGCGGT chrX:104156611-104157111 - 65 1.71e-05 GTCGCCGCCA TGACAGCGAGCGAGGCGGAGGT TTGTAGCACT chr12:57771828-57772328 - 18 1.71e-05 GCCGAGACTC GGAACGTGGCCGGAGCAGAGGC CCCACCGCCC chr17:67993893-67994393 + 23 1.71e-05 AGGCCGAGAG GGGAAGGGAAGCCAGGAGGGGA GGAGGCCGCT chr19:47483926-47484426 - 6 1.71e-05 GGCATGATGG GGGAGGCGGCCGTGGCCGCGGG GCCTT chr4:139295407-139295907 - 35 1.71e-05 CCCAGCCCAC GGGTGCAGGAGGCGGCAGCGGC CCGGGTTCGT chr1:244970685-244971185 - 1 1.92e-05 ACCCCAGGCG AGAGTGTGGAGGCGGCGGCGGC chr3:33798493-33798993 + 7 1.92e-05 TCTGTT TGGCCCGAACGGCGGCGGAGGC GCTGATCATG chr13:40770980-40771480 - 50 1.92e-05 GTAGCCCACC GGAGCGCAAAGGGGGAGGAAGG CGCCAGGCCG chr1:179293657-179294157 - 10 2.15e-05 GGGCAGAGCC GGGAAGCGGTCACAGAGCAGCC AGCAGGAAG chr10:73730274-73730774 + 59 2.15e-05 GCCGACTCTC CGGAGGGAAACAAAAAGGCAGA AAAAAGAGAC chr9:128771796-128772296 + 2 2.15e-05 A CGCGGGCGGCGGCGGCAGAAGG TTCCGGGGAC chr18:48952448-48952948 + 57 2.15e-05 AGGGGAACAG CCGCCGAGGGCGGGGAGGCGGC GTGAATATGA chr1:228486602-228487102 - 62 2.41e-05 TCGCCCGCGT GGGCTGGGGACGGGGCGGGAAA TGGCCTGCGT chr18:59358757-59359257 + 15 2.41e-05 CGGATGAAAG GCGAAGAGGCAGCAGAAGGGGG AGAGGAACCC chr19:33521491-33521991 - 59 2.41e-05 TGACGCCGGT GCCGGGCGAACATGGCGGCGGC CACCGGGTGA chr1:235128524-235129024 + 22 2.70e-05 TGGACGGTGG CGGCAGGGACCGCGAAGGAGCG GTGGGCCACG chr1:109483990-109484490 - 76 2.70e-05 GGT GGGCTGCGAGCGGTGAGCAGGC GCTAGGACCC chr6:139374282-139374782 + 63 2.70e-05 CGCCGAGGTC TCGCAGCGGCCGCTGGGGCAGA TTCGGAGCCG chr15:64387589-64388089 + 64 3.01e-05 AGCTGGTTCC GGCTGGGGAAGATGGCGGTGGC TGGGGCGGTG chr11:112961122-11296162 - 5 3.01e-05 TGATGGAACT GGGATGGGAGCGAGGAGCGGGG GGCG chr12:6470328-6470828 + 66 3.01e-05 CACCCGGTGA GGGACGCTGCGGCTGAAGTGGA CGGAACTGCC chr6:99568413-99568913 + 35 3.35e-05 CGACTCCGCT CCGCGGCGGCGACGGCGAAAGG AAGAGGATGG chr1:193121811-193122311 + 78 3.35e-05 TGCTGTTGGT TCGTCGCggcggcgaaggagga g chr1:226308675-226309175 + 71 3.35e-05 AACAAAGGCG GCGACGCGGCGGCAACACCGGA GTGGGAGG chr15:65517339-65517839 - 13 3.73e-05 ACTGCAACCA GGACCGGAGTGGAGGCGGCGCA GCATGAAGCG chr1:1375043-1375543 - 20 3.73e-05 GCAGAATCGG GGGCCGCGAGGACGCCAGCGGG CGCTGTGCGT chr7:149090361-149090861 - 69 3.73e-05 CCGGGCGGGA CCGCGGGGACCATGGCGGAGCC GCCTCGGGTA chr2:108719263-108719763 + 76 3.73e-05 GCTTTCCTCT TGGAAGTGGCGACTGCTGCGGG CCT chr17:7484173-7484673 + 13 3.73e-05 GCCGAGAGCG CGGCCGGGACGGTTGGAGAAGA AGGCGGCTCC chr1:28581564-28582064 + 44 3.73e-05 GGGGAACGGC GCGCAGGAAGGCAGGCAGAGGC TTGCAGCTAG chrX:72276889-72277389 + 48 4.14e-05 GGCAGCCCCG GCCGGGGGAGGATGGAGGCGGA TACGTCCTAA chr7:100837126-100837626 + 70 4.14e-05 GCGCCTTCCC AGGACGCAACCGCAGAAAAAGC GGCGGTGTG chr12:56158273-56158773 + 7 4.60e-05 GGAGAA GGCAGGGGTAGGAGGCAAAGGG AATCTGAGGA chr10:32958316-32958816 - 46 4.60e-05 CTCCCGCCCT TCGCAGAGGAGGAAACTGAGGC ACGGCGACTG chr1:212791630-212792130 - 42 5.09e-05 GCTTTAGACC GGCCAGCAGAGCCGGAGCCGGA ACGTTTCAGC chr11:73787675-73788175 + 29 5.63e-05 GTTTTCAGAC GCCCTGGGAACGCGGCTGCAGG GTCCGGTCTT chr12:62260003-62260503 + 6 6.22e-05 TGGAC GGGCGGGGACCGATGGGGGGCA GCAGACCATG chr2:71068472-71068972 + 69 6.22e-05 AGGGAGCCTG GGCCCGAAGGCGGGGCGGAAGG CCGTGGCCAG chr17:50397287-50397787 - 26 6.86e-05 GTCGCGGAAG GTGACGTGGACACGGAAGTGGT CGTCGTCGCG chr9:128656751-128657251 + 15 6.86e-05 GCGCTACTCC TGGGCGAGGAAACTGCGGAAGT GAGGCATTGG chr1:144551745-144552245 - 9 6.86e-05 CGTGTAAAGG GTGAGGCGTACGGGGCGGAGGT GCAGGAGC chr1:99849946-99850446 - 76 6.86e-05 GGC GGCGAGCGACCGGGGCAGCGCC GAGGCAGCTG chr19:35154681-35155181 - 76 7.56e-05 AGG CGGGCGGGAGCGAGGCAGAGCG GCCCACTGTA chr1:26695378-26695878 - 13 7.56e-05 GAGGAGGGGA GAGAACAAGCCGCGGCGGCGGC AGGCCCTCAG chr6:158999883-159000383 - 10 8.31e-05 TGCTGCGCCG CGGCAGGAGAAACAGCCGAGGA CACCCTGGA chr10:14878230-14878730 + 13 8.31e-05 ATGGCCCACG GGGCTGCGGTAGCTGCGGAACC GTACCCGACA chr5:79514306-79514806 - 13 8.31e-05 TCCTGCGGGG AGGATGGAGACACAGCGCGAGC ACCTGGTGTG chr10:119892292-11989279 - 48 8.31e-05 ACACCCTCGG AGGCGGAGGCCGGGCGGGAGGA TGGGGACGTG chr19:1383532-1384032 + 56 9.13e-05 ACGACCACGG AGGCCGAAAGCGCAGCGGAACC TCCCGGCTCC chr12:106357565-10635806 + 59 9.13e-05 AGTTTGCTTG GTGCAGGGAAGGCGGGCGCGGA GGTTCTATCT chr22:41446754-41447254 - 44 9.13e-05 CTGTGACAGG GAGGGGAAGACGGGGAGCCGGA CGCACGACCG chr17:32341905-32342405 + 22 9.13e-05 GACTCCTGCA AAGAGGGGAGCATTGCGGCGGC CTCTGAGCGG chr1:44213265-44213765 + 77 1.00e-04 GGAAGTGCGA GGGCCCAGGTGGCTGAAGGGGC CG chr19:42302213-42302713 - 49 1.00e-04 AAGGCTTCCG TCCCTGGAGAGGAGGCGGCGCC CTGTATCGGC chr7:105012545-105013045 - 49 1.00e-04 GGGTCTCTTT GGGGCGCGGGGGGAGAGGCACG TCCACCGCCG chr5:137754408-137754908 - 73 1.00e-04 AGTTGG GCGAGGGGATGAGTAAAGGGGA GGGGGAGAAA chr7:100428432-100428932 + 7 1.10e-04 TCCGCT GGCAGGGAGACCGGGCGGCGCA TCTCCCCGGG chr19:43754910-43755410 + 8 1.10e-04 AATGGAT ACGCCGAGGAGCCGGCAGGAGG GAGAGCGGCC chr5:32174235-32174735 - 78 1.10e-04 G GGGAACGGAAGGAGGGAGGGCA CGTCACGGGA chr17:7836757-7837257 - 8 1.20e-04 GACCACGGGA AGGGAGAGGGGAAAGAGATGGC ACGGGAC chr5:73216004-73216504 + 69 1.20e-04 GGGACCTGGA GCGCGGGAGCCAGGACGGCGCA GGCAGCTGGG chr1:244451460-244451960 - 26 1.31e-04 TCGGTGCGCA GTGGGGCGACGAAGGCAAAGGG AAGGTGGTGG chr6:143450453-143450953 + 29 1.31e-04 TCAGCTACAG AGCCCGCGGCAGAGGAGGAGCG CGGGCAGCGG chr1:228102983-228103483 + 32 1.31e-04 CCTCCACGAC TGGAGCCGAACATGGCGCCGGG AAGGCAGTTG chr1:228109003-228109503 + 24 1.31e-04 ACTAAGACCA GGGACGAGGCCACGCAGGAGAT CAAGGTACTC chr1:31944434-31944934 - 5 1.31e-04 TCCCCTCCCC CAAAGGCGGACGCAGGGGAAGC TCTA chr1:156456773-156457273 + 33 1.31e-04 GCAGGGAGGA CGCCGGGGGAGAGGGGTGAGGG GACTGCTGCG chr12:118135933-11813643 - 10 1.31e-04 GCGGTAGGCC AGGCGCGGGCGACAGAGGCGAC GCGGAGAGC chr5:139341688-139342188 - 66 1.43e-04 CTCACCCAAT GCACAGCAGCGGGGACGGCAGC CAACGAATCC chr6:96521613-96522113 - 28 1.43e-04 ACGGCCTGAC TCGCAGTAGACGCGGAGGAACT GCAGACACGT chr6:24402835-24403335 - 19 1.43e-04 GCGGGGCAGG AGGCAGGGTAAACTGCGCAGGC ATTCCATGGT chr14:28768005-28768505 - 72 1.43e-04 GCTGTAG GGCATGGGGTGGCTGGGGTAGG CCGACGTGGT chr12:123601746-12360224 - 14 1.56e-04 AGGAAAGGCG TCCGCGGGACGGTGGAGGCAGG CGGCGGGGCA chr15:89893890-89894390 + 28 1.56e-04 ACGCCTTGGA GGGCAGGTGCGGATGCCGAGGA GAGTGGTCAC chr1:225653504-225654004 - 69 1.56e-04 CAGGAATCGC TGGGCGCAGCCGCGGCGAGGGC GGGCAGTTGG chr12:990472-990972 - 57 1.56e-04 GGGCAGCCAA GCGCCGCGGGAGCAGCGCCGGG ATCGACCCTG chr6:36874559-36875059 + 10 1.56e-04 GAATTGCCG CCATAGCGAAGCCGGCGGCGGA ATGCTTGTCT chr2:55268991-55269491 - 58 1.56e-04 ACCGGAAGCC CGGCGGGGACCGTAGCGGGGAC GGACTGACCT chr10:72354688-72355188 + 13 1.85e-04 ATTCCATGGC GGAACCAGAACGCGGAACCAGG GAGGGGGAGG chr6:44313062-44313562 - 19 1.85e-04 AGTGGCAGCT GCAGCCCGGAGGCTGCGGCGGG CCATTCGAAG chr1:36088535-36089035 + 59 1.85e-04 CCGCTGGGCG GCGCTGTGGGCCTGGCGGCGGA GTGGAAACTC chr1:151281355-151281855 - 19 1.85e-04 CCTCTGCGGG AGGGCGTGGACGGGGCACGGGA TTTGGAGCAT chr3:183099148-183099648 - 35 2.01e-04 GCTGCTGGTG GCGGCGGAGAGGAACCGGTGGC ATCGTCTCCC chr19:44212484-44212984 + 1 2.01e-04 . cggccgcggcggaggccgagag gccgagggcg chr19:34134450-34134950 - 37 2.18e-04 TCCGGGGCAG GGGCCGGGAAGACTGGGCAGAT AAGAGAGCCG chr13:51584475-51584975 + 71 2.18e-04 CTGCAGCGGA TGGAGGGGTCCCAGGAGGTGGT GAATATGG chr1:53220263-53220763 - 57 2.37e-04 CCGCGGGGAC ACGGAGGGGAGGTGGCGAGGGT CTGGGAGGCA chr7:55365910-55366410 + 70 2.77e-04 TGTGTTCGTC CCCCGGCGACCACGGATGAGCC CGGCCTCCC chr19:36837952-36838452 - 40 3.23e-04 TGGGGGCGAG CGATCGCGATGGGAGCAGTGGA TGCGAGAGTG chr1:45303859-45304359 - 68 3.23e-04 GAGATCAAAG CGGATGGGATGACGCCACTGGA GGGCGCGCGG chr6:100880991-100881491 - 9 4.04e-04 AGCGCGGCTT GGAGGGCGGACGGGGCGCGGCG ATACAGCT chr18:11688932-11689432 + 69 5.75e-04 GCTGTATTTA CGGTAGCGAGGGCTGGACCGGC GGCGGCATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMVGVGRMSGCGGMGGMGGV MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:12611677-12612177 1.4e-09 51_[+2]_27 chr1:27321970-27322470 9.3e-08 62_[-2]_16 chr15:75368098-75368598 9.3e-08 43_[-2]_35 chr16:22297193-22297693 1.4e-07 73_[-2]_5 chr17:45148320-45148820 2.1e-07 [+2]_78 chr10:27998261-27998761 2.6e-07 32_[+2]_46 chr17:63621499-63621999 3.1e-07 [+2]_78 chr1:173714790-173715290 3.1e-07 38_[+2]_40 chr5:71455477-71455977 4.6e-07 32_[+2]_46 chr1:213987975-213988475 6.5e-07 18_[-2]_60 chr12:69585360-69585860 9.1e-07 55_[-2]_23 chr1:220046229-220046729 1.1e-06 61_[-2]_17 chr1:234723934-234724434 1.7e-06 13_[+2]_65 chr19:38831525-38832025 1.7e-06 36_[-2]_42 chr16:58392272-58392772 2e-06 33_[-2]_45 chr1:184386540-184387040 2e-06 78_[-2] chr6:143511296-143511796 2e-06 63_[+2]_15 chr8:89984183-89984683 2e-06 11_[-2]_67 chr9:133030731-133031231 2.4e-06 72_[+2]_6 chr1:120176276-120176776 3.2e-06 14_[-2]_64 chr13:113296704-11329720 3.2e-06 58_[-2]_20 chr15:68277485-68277985 3.2e-06 47_[-2]_31 chr12:28190332-28190832 3.6e-06 68_[+2]_10 chr12:2812672-2813172 4.2e-06 26_[+2]_52 chr1:155562849-155563349 4.2e-06 68_[-2]_10 chr4:24472607-24473107 4.8e-06 56_[+2]_22 chr7:149239427-149239927 4.8e-06 41_[+2]_37 chr1:15526614-15527114 4.8e-06 31_[-2]_47 chr12:113185234-11318573 4.8e-06 26_[+2]_52 chr10:17201373-17201873 4.8e-06 64_[-2]_14 chr1:109484194-109484694 5.5e-06 51_[-2]_27 chr6:125956694-125957194 6.3e-06 12_[+2]_66 chr18:50281154-50281654 6.3e-06 78_[-2] chr17:73310554-73311054 6.3e-06 72_[-2]_6 chr14:90396803-90397303 6.3e-06 73_[+2]_5 chr12:27710683-27711183 7.2e-06 26_[-2]_52 chr18:50878580-50879080 7.2e-06 72_[-2]_6 chr13:111153219-11115371 7.2e-06 33_[+2]_45 chr15:67521220-67521720 7.2e-06 63_[-2]_15 chr7:99465811-99466311 7.2e-06 16_[-2]_62 chr1:93078933-93079433 8.2e-06 51_[-2]_27 chr12:49060539-49061039 9.3e-06 1_[+2]_77 chr1:224113949-224114449 9.3e-06 18_[+2]_60 chr7:102572279-102572779 9.3e-06 42_[-2]_36 chr7:112790011-112790511 1.1e-05 44_[+2]_34 chr19:41310077-41310577 1.1e-05 46_[+2]_32 chr1:230978931-230979431 1.1e-05 43_[-2]_35 chr11:47578712-47579212 1.1e-05 55_[-2]_23 chr1:155017241-155017741 1.1e-05 6_[-2]_72 chr12:53501143-53501643 1.2e-05 42_[+2]_36 chr10:42782510-42783010 1.2e-05 24_[-2]_54 chr1:224356754-224357254 1.2e-05 68_[+2]_10 chr6:28080740-28081240 1.2e-05 57_[-2]_21 chr11:116772695-11677319 1.3e-05 68_[+2]_10 chr6:157323339-157323839 1.5e-05 31_[-2]_47 chr12:120446139-12044663 1.5e-05 44_[+2]_34 chr7:97872037-97872537 1.5e-05 16_[-2]_62 chr17:36545475-36545975 1.5e-05 8_[+2]_70 chr19:39833787-39834287 1.7e-05 7_[-2]_71 chrX:104156611-104157111 1.7e-05 64_[-2]_14 chr12:57771828-57772328 1.7e-05 17_[-2]_61 chr17:67993893-67994393 1.7e-05 22_[+2]_56 chr19:47483926-47484426 1.7e-05 5_[-2]_73 chr4:139295407-139295907 1.7e-05 34_[-2]_44 chr1:244970685-244971185 1.9e-05 [-2]_78 chr3:33798493-33798993 1.9e-05 6_[+2]_72 chr13:40770980-40771480 1.9e-05 49_[-2]_29 chr1:179293657-179294157 2.2e-05 9_[-2]_69 chr10:73730274-73730774 2.2e-05 58_[+2]_20 chr9:128771796-128772296 2.2e-05 1_[+2]_77 chr18:48952448-48952948 2.2e-05 56_[+2]_22 chr1:228486602-228487102 2.4e-05 61_[-2]_17 chr18:59358757-59359257 2.4e-05 14_[+2]_64 chr19:33521491-33521991 2.4e-05 58_[-2]_20 chr1:235128524-235129024 2.7e-05 21_[+2]_57 chr1:109483990-109484490 2.7e-05 75_[-2]_3 chr6:139374282-139374782 2.7e-05 62_[+2]_16 chr15:64387589-64388089 3e-05 63_[+2]_15 chr11:112961122-11296162 3e-05 4_[-2]_74 chr12:6470328-6470828 3e-05 65_[+2]_13 chr6:99568413-99568913 3.4e-05 34_[+2]_44 chr1:193121811-193122311 3.4e-05 77_[+2]_1 chr1:226308675-226309175 3.4e-05 70_[+2]_8 chr15:65517339-65517839 3.7e-05 12_[-2]_66 chr1:1375043-1375543 3.7e-05 19_[-2]_59 chr7:149090361-149090861 3.7e-05 68_[-2]_10 chr2:108719263-108719763 3.7e-05 75_[+2]_3 chr17:7484173-7484673 3.7e-05 12_[+2]_66 chr1:28581564-28582064 3.7e-05 43_[+2]_35 chrX:72276889-72277389 4.1e-05 47_[+2]_31 chr7:100837126-100837626 4.1e-05 69_[+2]_9 chr12:56158273-56158773 4.6e-05 6_[+2]_72 chr10:32958316-32958816 4.6e-05 45_[-2]_33 chr1:212791630-212792130 5.1e-05 41_[-2]_37 chr11:73787675-73788175 5.6e-05 28_[+2]_50 chr12:62260003-62260503 6.2e-05 5_[+2]_73 chr2:71068472-71068972 6.2e-05 68_[+2]_10 chr17:50397287-50397787 6.9e-05 25_[-2]_53 chr9:128656751-128657251 6.9e-05 14_[+2]_64 chr1:144551745-144552245 6.9e-05 8_[-2]_70 chr1:99849946-99850446 6.9e-05 75_[-2]_3 chr19:35154681-35155181 7.6e-05 75_[-2]_3 chr1:26695378-26695878 7.6e-05 12_[-2]_66 chr6:158999883-159000383 8.3e-05 9_[-2]_69 chr10:14878230-14878730 8.3e-05 12_[+2]_66 chr5:79514306-79514806 8.3e-05 12_[-2]_66 chr10:119892292-11989279 8.3e-05 47_[-2]_31 chr19:1383532-1384032 9.1e-05 55_[+2]_23 chr12:106357565-10635806 9.1e-05 58_[+2]_20 chr22:41446754-41447254 9.1e-05 43_[-2]_35 chr17:32341905-32342405 9.1e-05 21_[+2]_57 chr1:44213265-44213765 0.0001 76_[+2]_2 chr19:42302213-42302713 0.0001 48_[-2]_30 chr7:105012545-105013045 0.0001 48_[-2]_30 chr5:137754408-137754908 0.0001 72_[-2]_6 chr7:100428432-100428932 0.00011 6_[+2]_72 chr19:43754910-43755410 0.00011 7_[+2]_71 chr5:32174235-32174735 0.00011 77_[-2]_1 chr17:7836757-7837257 0.00012 7_[-2]_71 chr5:73216004-73216504 0.00012 68_[+2]_10 chr1:244451460-244451960 0.00013 25_[-2]_53 chr6:143450453-143450953 0.00013 28_[+2]_50 chr1:228102983-228103483 0.00013 31_[+2]_47 chr1:228109003-228109503 0.00013 23_[+2]_55 chr1:31944434-31944934 0.00013 4_[-2]_74 chr1:156456773-156457273 0.00013 32_[+2]_46 chr12:118135933-11813643 0.00013 9_[-2]_69 chr5:139341688-139342188 0.00014 65_[-2]_13 chr6:96521613-96522113 0.00014 27_[-2]_51 chr6:24402835-24403335 0.00014 18_[-2]_60 chr14:28768005-28768505 0.00014 71_[-2]_7 chr12:123601746-12360224 0.00016 13_[-2]_65 chr15:89893890-89894390 0.00016 27_[+2]_51 chr1:225653504-225654004 0.00016 68_[-2]_10 chr12:990472-990972 0.00016 56_[-2]_22 chr6:36874559-36875059 0.00016 9_[+2]_69 chr2:55268991-55269491 0.00016 57_[-2]_21 chr10:72354688-72355188 0.00019 12_[+2]_66 chr6:44313062-44313562 0.00019 18_[-2]_60 chr1:36088535-36089035 0.00019 58_[+2]_20 chr1:151281355-151281855 0.00019 18_[-2]_60 chr3:183099148-183099648 0.0002 34_[-2]_44 chr19:44212484-44212984 0.0002 [+2]_78 chr19:34134450-34134950 0.00022 36_[-2]_42 chr13:51584475-51584975 0.00022 70_[+2]_8 chr1:53220263-53220763 0.00024 56_[-2]_22 chr7:55365910-55366410 0.00028 69_[+2]_9 chr19:36837952-36838452 0.00032 39_[-2]_39 chr1:45303859-45304359 0.00032 67_[-2]_11 chr6:100880991-100881491 0.0004 8_[-2]_70 chr18:11688932-11689432 0.00058 68_[+2]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMVGVGRMSGCGGMGGMGGV MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGMVGVGRMSGCGGMGGMGGV width=22 seqs=151 chr12:12611677-12612177 ( 52) GGGAGGAGGAGGCGGCGGCGGC 1 chr1:27321970-27322470 ( 63) GGGCGGGGGTGGCGGCGGCGGC 1 chr15:75368098-75368598 ( 44) GGGCAGGGGCCGGGGAGGAGGG 1 chr16:22297193-22297693 ( 74) GGGCTGCAGAGACGGCGGCGGC 1 chr17:45148320-45148820 ( 1) CGGGGGAGGACGCGGAAGAGGA 1 chr10:27998261-27998761 ( 33) GGGAAGCGGCGGGAGAAGTGGA 1 chr17:63621499-63621999 ( 1) GGGATGGGGCCGCAGAGGTGGC 1 chr1:173714790-173715290 ( 39) GGGCGGAGTAGACGGAGGAGGC 1 chr5:71455477-71455977 ( 33) GAGAGGAGGAGGCGGCGGCGGG 1 chr1:213987975-213988475 ( 19) GCGAGGAGAGGGAAGAAGAGGA 1 chr12:69585360-69585860 ( 56) GGGCCGGGGAGACAGAAACGGA 1 chr1:220046229-220046729 ( 62) GCGGAGCGAAGGCTGCGGCGGC 1 chr1:234723934-234724434 ( 14) AGGAAGGGAGGAGGGAGGTGGA 1 chr19:38831525-38832025 ( 37) AGGCGGCGGCGATGGCGGCGGG 1 chr16:58392272-58392772 ( 34) GGGAAGCGGAGACTGGGCAGGA 1 chr1:184386540-184387040 ( 79) GGGGCGGGAAGGAGGCGGCAGT 1 chr6:143511296-143511796 ( 64) CGGCGGCGGCGGCAGCAGCAGC 1 chr8:89984183-89984683 ( 12) CGGAAGCGGTCGCAGAAGCGGC 1 chr9:133030731-133031231 ( 73) GCACAGGGATGGCGGCGGAGGC 1 chr1:120176276-120176776 ( 15) GGGAAGCGGAGACGCAAGCAGC 1 chr13:113296704-11329720 ( 59) TCGCGGAAAAGGAAGAGGAAGA 1 chr15:68277485-68277985 ( 48) GGGAGGAGAGGGCGGGAGCGGG 1 chr12:28190332-28190832 ( 69) GCGGCGCAGCGGCGGCAGCGGA 1 chr12:2812672-2813172 ( 27) GGGACGGGGCAAGGGAAGTGGA 1 chr1:155562849-155563349 ( 69) GCGATCCGGCGGAGGAGGAGGA 1 chr4:24472607-24473107 ( 57) GGGATGGAGGCGCAGAGGCAGC 1 chr7:149239427-149239927 ( 42) ACACGGCGGCGGCGGCGGCGGC 1 chr1:15526614-15527114 ( 32) GGCCTGGGGAGGGGAAAGAGGA 1 chr12:113185234-11318573 ( 27) GCGCTGGGAACGCAGAAGGGGG 1 chr10:17201373-17201873 ( 65) GGGCTGCGGCGGCTGAGGCGCG 1 chr1:109484194-109484694 ( 52) AGGAAGGGGGCACAGAAGTGGG 1 chr6:125956694-125957194 ( 13) GGGACGCGGAGACTGCGCGGGC 1 chr18:50281154-50281654 ( 79) GGGAGGAGGGCGAGGCGGGAGG 1 chr17:73310554-73311054 ( 73) GGGCGGGAGCCGGGGCTGAGGC 1 chr14:90396803-90397303 ( 74) AGGCGGCGGCGCAGGCGGCGGC 1 chr12:27710683-27711183 ( 27) TGGCCGAGTAGACGGCAGTGGA 1 chr18:50878580-50879080 ( 73) GCAGTGCGGAGGAGGAGGTGGA 1 chr13:111153219-11115371 ( 34) GACAGGAGGAGGCGGCGGTGGC 1 chr15:67521220-67521720 ( 64) GGGAAGCAGCCGGTGCGCAGGA 1 chr7:99465811-99466311 ( 17) TGGGAGAGAAGGAAGCTGCGGA 1 chr1:93078933-93079433 ( 52) GCGCGGCGAGCGCGGAGGAACA 1 chr12:49060539-49061039 ( 2) GAGAGGGGGAGAAAGGAGAAGA 1 chr1:224113949-224114449 ( 19) AGGCGGCGGCCAAGGCGACGGC 1 chr7:102572279-102572779 ( 43) TGGACGCAACGGCGGCGGGAGC 1 chr7:112790011-112790511 ( 45) CGACTGAGAACAGGGAGGCGGC 1 chr19:41310077-41310577 ( 47) CGACGGCGACGGCGGCGAAGGA 1 chr1:230978931-230979431 ( 44) GGCAGGAGGCCGAGGCAGCAGT 1 chr11:47578712-47579212 ( 56) CGGACGTGGAGCCGGAAGCGGA 1 chr1:155017241-155017741 ( 7) GCCCCGGGGAGGGAGCGGCGGG 1 chr12:53501143-53501643 ( 43) CGCCCGCGGGGACGGAGGAGGG 1 chr10:42782510-42783010 ( 25) CGGAGGGAAACAAGAAGGCAGA 1 chr1:224356754-224357254 ( 69) TGCCGGGGGACACGGCTGAGGG 1 chr6:28080740-28081240 ( 58) TGGAGGGGGACACGGGGCTGGA 1 chr11:116772695-11677319 ( 69) TGGCAGCGGCGGGGGCAGAGAG 1 chr6:157323339-157323839 ( 32) AGGAGGAGGCGGTAGCGGAACC 1 chr12:120446139-12044663 ( 45) TGGCGGCGGCGACGACGGCGCA 1 chr7:97872037-97872537 ( 17) AGGAAGGGGTGGAGGATGCGGT 1 chr17:36545475-36545975 ( 9) GGGAGGAGGTGGTGACGGTGGC 1 chr19:39833787-39834287 ( 8) GCGCGGGGACGGGTGGGGCGGC 1 chrX:104156611-104157111 ( 65) TGACAGCGAGCGAGGCGGAGGT 1 chr12:57771828-57772328 ( 18) GGAACGTGGCCGGAGCAGAGGC 1 chr17:67993893-67994393 ( 23) GGGAAGGGAAGCCAGGAGGGGA 1 chr19:47483926-47484426 ( 6) GGGAGGCGGCCGTGGCCGCGGG 1 chr4:139295407-139295907 ( 35) GGGTGCAGGAGGCGGCAGCGGC 1 chr1:244970685-244971185 ( 1) AGAGTGTGGAGGCGGCGGCGGC 1 chr3:33798493-33798993 ( 7) TGGCCCGAACGGCGGCGGAGGC 1 chr13:40770980-40771480 ( 50) GGAGCGCAAAGGGGGAGGAAGG 1 chr1:179293657-179294157 ( 10) GGGAAGCGGTCACAGAGCAGCC 1 chr10:73730274-73730774 ( 59) CGGAGGGAAACAAAAAGGCAGA 1 chr9:128771796-128772296 ( 2) CGCGGGCGGCGGCGGCAGAAGG 1 chr18:48952448-48952948 ( 57) CCGCCGAGGGCGGGGAGGCGGC 1 chr1:228486602-228487102 ( 62) GGGCTGGGGACGGGGCGGGAAA 1 chr18:59358757-59359257 ( 15) GCGAAGAGGCAGCAGAAGGGGG 1 chr19:33521491-33521991 ( 59) GCCGGGCGAACATGGCGGCGGC 1 chr1:235128524-235129024 ( 22) CGGCAGGGACCGCGAAGGAGCG 1 chr1:109483990-109484490 ( 76) GGGCTGCGAGCGGTGAGCAGGC 1 chr6:139374282-139374782 ( 63) TCGCAGCGGCCGCTGGGGCAGA 1 chr15:64387589-64388089 ( 64) GGCTGGGGAAGATGGCGGTGGC 1 chr11:112961122-11296162 ( 5) GGGATGGGAGCGAGGAGCGGGG 1 chr12:6470328-6470828 ( 66) GGGACGCTGCGGCTGAAGTGGA 1 chr6:99568413-99568913 ( 35) CCGCGGCGGCGACGGCGAAAGG 1 chr1:193121811-193122311 ( 78) TCGTCGCGGCGGCGAAGGAGGA 1 chr1:226308675-226309175 ( 71) GCGACGCGGCGGCAACACCGGA 1 chr15:65517339-65517839 ( 13) GGACCGGAGTGGAGGCGGCGCA 1 chr1:1375043-1375543 ( 20) GGGCCGCGAGGACGCCAGCGGG 1 chr7:149090361-149090861 ( 69) CCGCGGGGACCATGGCGGAGCC 1 chr2:108719263-108719763 ( 76) TGGAAGTGGCGACTGCTGCGGG 1 chr17:7484173-7484673 ( 13) CGGCCGGGACGGTTGGAGAAGA 1 chr1:28581564-28582064 ( 44) GCGCAGGAAGGCAGGCAGAGGC 1 chrX:72276889-72277389 ( 48) GCCGGGGGAGGATGGAGGCGGA 1 chr7:100837126-100837626 ( 70) AGGACGCAACCGCAGAAAAAGC 1 chr12:56158273-56158773 ( 7) GGCAGGGGTAGGAGGCAAAGGG 1 chr10:32958316-32958816 ( 46) TCGCAGAGGAGGAAACTGAGGC 1 chr1:212791630-212792130 ( 42) GGCCAGCAGAGCCGGAGCCGGA 1 chr11:73787675-73788175 ( 29) GCCCTGGGAACGCGGCTGCAGG 1 chr12:62260003-62260503 ( 6) GGGCGGGGACCGATGGGGGGCA 1 chr2:71068472-71068972 ( 69) GGCCCGAAGGCGGGGCGGAAGG 1 chr17:50397287-50397787 ( 26) GTGACGTGGACACGGAAGTGGT 1 chr9:128656751-128657251 ( 15) TGGGCGAGGAAACTGCGGAAGT 1 chr1:144551745-144552245 ( 9) GTGAGGCGTACGGGGCGGAGGT 1 chr1:99849946-99850446 ( 76) GGCGAGCGACCGGGGCAGCGCC 1 chr19:35154681-35155181 ( 76) CGGGCGGGAGCGAGGCAGAGCG 1 chr1:26695378-26695878 ( 13) GAGAACAAGCCGCGGCGGCGGC 1 chr6:158999883-159000383 ( 10) CGGCAGGAGAAACAGCCGAGGA 1 chr10:14878230-14878730 ( 13) GGGCTGCGGTAGCTGCGGAACC 1 chr5:79514306-79514806 ( 13) AGGATGGAGACACAGCGCGAGC 1 chr10:119892292-11989279 ( 48) AGGCGGAGGCCGGGCGGGAGGA 1 chr19:1383532-1384032 ( 56) AGGCCGAAAGCGCAGCGGAACC 1 chr12:106357565-10635806 ( 59) GTGCAGGGAAGGCGGGCGCGGA 1 chr22:41446754-41447254 ( 44) GAGGGGAAGACGGGGAGCCGGA 1 chr17:32341905-32342405 ( 22) AAGAGGGGAGCATTGCGGCGGC 1 chr1:44213265-44213765 ( 77) GGGCCCAGGTGGCTGAAGGGGC 1 chr19:42302213-42302713 ( 49) TCCCTGGAGAGGAGGCGGCGCC 1 chr7:105012545-105013045 ( 49) GGGGCGCGGGGGGAGAGGCACG 1 chr5:137754408-137754908 ( 73) GCGAGGGGATGAGTAAAGGGGA 1 chr7:100428432-100428932 ( 7) GGCAGGGAGACCGGGCGGCGCA 1 chr19:43754910-43755410 ( 8) ACGCCGAGGAGCCGGCAGGAGG 1 chr5:32174235-32174735 ( 78) GGGAACGGAAGGAGGGAGGGCA 1 chr17:7836757-7837257 ( 8) AGGGAGAGGGGAAAGAGATGGC 1 chr5:73216004-73216504 ( 69) GCGCGGGAGCCAGGACGGCGCA 1 chr1:244451460-244451960 ( 26) GTGGGGCGACGAAGGCAAAGGG 1 chr6:143450453-143450953 ( 29) AGCCCGCGGCAGAGGAGGAGCG 1 chr1:228102983-228103483 ( 32) TGGAGCCGAACATGGCGCCGGG 1 chr1:228109003-228109503 ( 24) GGGACGAGGCCACGCAGGAGAT 1 chr1:31944434-31944934 ( 5) CAAAGGCGGACGCAGGGGAAGC 1 chr1:156456773-156457273 ( 33) CGCCGGGGGAGAGGGGTGAGGG 1 chr12:118135933-11813643 ( 10) AGGCGCGGGCGACAGAGGCGAC 1 chr5:139341688-139342188 ( 66) GCACAGCAGCGGGGACGGCAGC 1 chr6:96521613-96522113 ( 28) TCGCAGTAGACGCGGAGGAACT 1 chr6:24402835-24403335 ( 19) AGGCAGGGTAAACTGCGCAGGC 1 chr14:28768005-28768505 ( 72) GGCATGGGGTGGCTGGGGTAGG 1 chr12:123601746-12360224 ( 14) TCCGCGGGACGGTGGAGGCAGG 1 chr15:89893890-89894390 ( 28) GGGCAGGTGCGGATGCCGAGGA 1 chr1:225653504-225654004 ( 69) TGGGCGCAGCCGCGGCGAGGGC 1 chr12:990472-990972 ( 57) GCGCCGCGGGAGCAGCGCCGGG 1 chr6:36874559-36875059 ( 10) CCATAGCGAAGCCGGCGGCGGA 1 chr2:55268991-55269491 ( 58) CGGCGGGGACCGTAGCGGGGAC 1 chr10:72354688-72355188 ( 13) GGAACCAGAACGCGGAACCAGG 1 chr6:44313062-44313562 ( 19) GCAGCCCGGAGGCTGCGGCGGG 1 chr1:36088535-36089035 ( 59) GCGCTGTGGGCCTGGCGGCGGA 1 chr1:151281355-151281855 ( 19) AGGGCGTGGACGGGGCACGGGA 1 chr3:183099148-183099648 ( 35) GCGGCGGAGAGGAACCGGTGGC 1 chr19:44212484-44212984 ( 1) CGGCCGCGGCGGAGGCCGAGAG 1 chr19:34134450-34134950 ( 37) GGGCCGGGAAGACTGGGCAGAT 1 chr13:51584475-51584975 ( 71) TGGAGGGGTCCCAGGAGGTGGT 1 chr1:53220263-53220763 ( 57) ACGGAGGGGAGGTGGCGAGGGT 1 chr7:55365910-55366410 ( 70) CCCCGGCGACCACGGATGAGCC 1 chr19:36837952-36838452 ( 40) CGATCGCGATGGGAGCAGTGGA 1 chr1:45303859-45304359 ( 68) CGGATGGGATGACGCCACTGGA 1 chr6:100880991-100881491 ( 9) GGAGGGCGGACGGGGCGCGGCG 1 chr18:11688932-11689432 ( 69) CGGTAGCGAGGGCTGGACCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMVGVGRMSGCGGMGGMGGV MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 9.72871 E= 1.9e-022 -42 -86 81 -42 -201 -32 111 -282 -73 -111 124 -1388 94 48 -92 -223 35 -21 19 -49 -1388 -224 157 -1388 9 24 27 -182 -1 -1388 135 -381 86 -1388 99 -223 112 16 -98 -112 -182 29 84 -1388 68 -224 102 -1388 14 66 -66 -91 23 -1388 100 -29 -123 -298 149 -1388 88 79 -148 -1388 61 -324 99 -165 -149 -124 135 -1388 91 34 -132 -57 27 -1388 131 -1388 -201 -111 137 -1388 77 16 -32 -123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMVGVGRMSGCGGMGGMGGV MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 151 E= 1.9e-022 0.139073 0.172185 0.549669 0.139073 0.046358 0.251656 0.675497 0.026490 0.112583 0.145695 0.741722 0.000000 0.357616 0.437086 0.165563 0.039735 0.238411 0.271523 0.357616 0.132450 0.000000 0.066225 0.933775 0.000000 0.198675 0.370861 0.377483 0.052980 0.185430 0.000000 0.801325 0.013245 0.337748 0.000000 0.622517 0.039735 0.403974 0.350993 0.158940 0.086093 0.052980 0.384106 0.562914 0.000000 0.298013 0.066225 0.635762 0.000000 0.205298 0.496689 0.198675 0.099338 0.218543 0.000000 0.629139 0.152318 0.079470 0.039735 0.880795 0.000000 0.344371 0.543046 0.112583 0.000000 0.284768 0.033113 0.622517 0.059603 0.066225 0.132450 0.801325 0.000000 0.350993 0.397351 0.125828 0.125828 0.225166 0.000000 0.774834 0.000000 0.046358 0.145695 0.807947 0.000000 0.317881 0.350993 0.251656 0.079470 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGMVGVGRMSGCGGMGGMGGV MEME-2 regular expression -------------------------------------------------------------------------------- G[GC]G[CA][GCA]G[GC]G[GA][AC][GC][GA][CA][GA]G[CA][GA]G[CA][GA]G[CAG] -------------------------------------------------------------------------------- Time 1039.54 secs. ******************************************************************************** ******************************************************************************** MOTIF AAATRRAWATWADAAA MEME-3 width = 16 sites = 31 llr = 404 E-value = 1.7e-020 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAATRRAWATWADAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 9a82657582473875 pos.-specific C ::21::1::22:1::1 probability G ::::4322:1::31:2 matrix T 1::7:21325434132 bits 2.4 2.2 ** 1.9 ** 1.7 *** * Relative 1.5 *** * * ** Entropy 1.2 ***** * * ** (18.8 bits) 1.0 ***** *** * ** 0.7 ********* ** ** 0.5 ************ *** 0.2 **************** 0.0 ---------------- Multilevel AAATAAAAATAATAAA consensus GG T TTA T sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATRRAWATWADAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr19:35881955-35882455 + 5 1.23e-11 ataa aaataaaaataaaaaa taaataaata chrUn_KI270467v1:1948-24 - 9 5.43e-10 AAAGTTGCCC AAATATATATTATATA CTGTACAT chrUn_KI270466v1:125-625 - 13 5.43e-10 AAAATATCCA AAATATATATTATATA CTGTACATAA chr6:73461362-73461862 + 42 7.45e-10 taaaaataaa aaataataataataaa aaaaGCCCGC chrUn_KI270467v1:2926-34 - 32 1.10e-08 CAAATACTCA AAATATATATTACATA CTGTACATAA chr9:33474197-33474697 - 21 1.10e-08 ATAAATAAAT AAATAAAAATAACTAA ATTACTTGAA chr6:79078192-79078692 - 62 1.25e-08 CTCCGACTGG AAATAAATAAATAAAT CGCACGCCCT chr15:101945846-10194634 - 16 1.25e-08 TAAATAAATA AAATAAATTATTTAAA AATCGGCAGA chr7:135716582-135717082 + 4 1.63e-08 tta aaatgaagataaaaat aatagcacct chrUn_KI270467v1:2156-26 - 8 5.81e-08 AAAGTACCCA AACTGTATATTATATA CTGTACA chr1:81126925-81127425 + 83 9.18e-08 CAAGCTGTCA AAAAAAGGATTAGAAA GT chr6:33271608-33272108 + 37 1.78e-07 ACCCAACTGC AAATGGAAATATGGAA GTCTGAAACA chrUn_KI270467v1:3129-36 - 80 4.02e-07 ACCCA AACTGTGTATTATATA CTGTCCATAA chr7:100837126-100837626 - 2 4.85e-07 CACCATTTTT TAATGGAAAAAATAAT A chr7:133492167-133492667 - 63 5.33e-07 AAACACAACC AAAAGAGAACCATAAA AGCATACATA chr1:12478072-12478572 + 64 5.33e-07 CAGCACGACG AAAAGGAGATAATATG AGCCTTCGTG chr1:161530881-161531381 + 1 5.86e-07 . ATATAGATATCTAAAA CTCCAAACCG chr7:141738057-141738557 - 61 7.72e-07 TCGCCAGAGG AAAAAGGAAACAGAAA CTCCGCAACT chr19:40567075-40567575 + 64 8.46e-07 ataaataaat aaataaaGTCTTAAAG TCCTGGGTGG chr1:6404487-6404987 + 61 1.20e-06 ataaataaat aaataaataaaAGTGA CATGACCTGT chr5:59303187-59303687 - 19 1.31e-06 AATGCAATAA AAACAAAGATAAATAG CTGGGACCTC chr5:160008634-160009134 + 62 1.55e-06 ataaataaat aaataaataGTGAAAC GAACACCACA chr2:165953820-165954320 + 30 1.68e-06 CGGGCCGAGG AAATGGAATTCAGGAA TAAAGGAAAC chr1:235328502-235329002 + 4 1.83e-06 ATA AAATAGGAAGTTGATG CGGGGTACAG chr10:75379134-75379634 - 51 2.95e-06 TGCATCAAGC AAATGACATTATTATC CATCCGAAGT chr19:44164542-44165042 + 34 2.95e-06 GGATTCTGGG AAATGAAAACCAGGAG CTCAAGGTAG chr1:233112915-233113415 - 59 3.18e-06 CCTCTTGCAA AACCAGGAAGAATAAA CCACAATCTG chr19:54115376-54115876 - 79 4.95e-06 CATTTG AAACAACAACTTTATT AGCACCTGGC chr15:67792424-67792924 + 62 6.55e-06 ATGTCATCCC TAATGGTATTAAAAAT CAAGATGAAG chr6:82260184-82260684 - 30 7.02e-06 AATTTGCAGC AACAATAAACTTCAAG TAATGGGTCT chr6:132813981-132814481 + 4 7.51e-06 AGC AACAGGAAAGTAGAAC GTGGTGTGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATRRAWATWADAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:35881955-35882455 1.2e-11 4_[+3]_80 chrUn_KI270467v1:1948-24 5.4e-10 8_[-3]_76 chrUn_KI270466v1:125-625 5.4e-10 12_[-3]_72 chr6:73461362-73461862 7.4e-10 41_[+3]_43 chrUn_KI270467v1:2926-34 1.1e-08 31_[-3]_53 chr9:33474197-33474697 1.1e-08 20_[-3]_64 chr6:79078192-79078692 1.2e-08 61_[-3]_23 chr15:101945846-10194634 1.2e-08 15_[-3]_69 chr7:135716582-135717082 1.6e-08 3_[+3]_81 chrUn_KI270467v1:2156-26 5.8e-08 7_[-3]_77 chr1:81126925-81127425 9.2e-08 82_[+3]_2 chr6:33271608-33272108 1.8e-07 36_[+3]_48 chrUn_KI270467v1:3129-36 4e-07 79_[-3]_5 chr7:100837126-100837626 4.9e-07 1_[-3]_83 chr7:133492167-133492667 5.3e-07 62_[-3]_22 chr1:12478072-12478572 5.3e-07 63_[+3]_21 chr1:161530881-161531381 5.9e-07 [+3]_84 chr7:141738057-141738557 7.7e-07 60_[-3]_24 chr19:40567075-40567575 8.5e-07 63_[+3]_21 chr1:6404487-6404987 1.2e-06 60_[+3]_24 chr5:59303187-59303687 1.3e-06 18_[-3]_66 chr5:160008634-160009134 1.6e-06 61_[+3]_23 chr2:165953820-165954320 1.7e-06 29_[+3]_55 chr1:235328502-235329002 1.8e-06 3_[+3]_81 chr10:75379134-75379634 2.9e-06 50_[-3]_34 chr19:44164542-44165042 2.9e-06 33_[+3]_51 chr1:233112915-233113415 3.2e-06 58_[-3]_26 chr19:54115376-54115876 4.9e-06 78_[-3]_6 chr15:67792424-67792924 6.6e-06 61_[+3]_23 chr6:82260184-82260684 7e-06 29_[-3]_55 chr6:132813981-132814481 7.5e-06 3_[+3]_81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATRRAWATWADAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAATRRAWATWADAAA width=16 seqs=31 chr19:35881955-35882455 ( 5) AAATAAAAATAAAAAA 1 chrUn_KI270467v1:1948-24 ( 9) AAATATATATTATATA 1 chrUn_KI270466v1:125-625 ( 13) AAATATATATTATATA 1 chr6:73461362-73461862 ( 42) AAATAATAATAATAAA 1 chrUn_KI270467v1:2926-34 ( 32) AAATATATATTACATA 1 chr9:33474197-33474697 ( 21) AAATAAAAATAACTAA 1 chr6:79078192-79078692 ( 62) AAATAAATAAATAAAT 1 chr15:101945846-10194634 ( 16) AAATAAATTATTTAAA 1 chr7:135716582-135717082 ( 4) AAATGAAGATAAAAAT 1 chrUn_KI270467v1:2156-26 ( 8) AACTGTATATTATATA 1 chr1:81126925-81127425 ( 83) AAAAAAGGATTAGAAA 1 chr6:33271608-33272108 ( 37) AAATGGAAATATGGAA 1 chrUn_KI270467v1:3129-36 ( 80) AACTGTGTATTATATA 1 chr7:100837126-100837626 ( 2) TAATGGAAAAAATAAT 1 chr7:133492167-133492667 ( 63) AAAAGAGAACCATAAA 1 chr1:12478072-12478572 ( 64) AAAAGGAGATAATATG 1 chr1:161530881-161531381 ( 1) ATATAGATATCTAAAA 1 chr7:141738057-141738557 ( 61) AAAAAGGAAACAGAAA 1 chr19:40567075-40567575 ( 64) AAATAAAGTCTTAAAG 1 chr1:6404487-6404987 ( 61) AAATAAATAAAAGTGA 1 chr5:59303187-59303687 ( 19) AAACAAAGATAAATAG 1 chr5:160008634-160009134 ( 62) AAATAAATAGTGAAAC 1 chr2:165953820-165954320 ( 30) AAATGGAATTCAGGAA 1 chr1:235328502-235329002 ( 4) AAATAGGAAGTTGATG 1 chr10:75379134-75379634 ( 51) AAATGACATTATTATC 1 chr19:44164542-44165042 ( 34) AAATGAAAACCAGGAG 1 chr1:233112915-233113415 ( 59) AACCAGGAAGAATAAA 1 chr19:54115376-54115876 ( 79) AAACAACAACTTTATT 1 chr15:67792424-67792924 ( 62) TAATGGTATTAAAAAT 1 chr6:82260184-82260684 ( 30) AACAATAAACTTCAAG 1 chr6:132813981-132814481 ( 4) AACAGGAAAGTAGAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATRRAWATWADAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 11.3897 E= 1.7e-020 233 -1160 -1160 -153 238 -1160 -1160 -253 217 -96 -1160 -1160 5 -169 -1160 193 172 -1160 30 -1160 138 -1160 4 5 186 -228 -70 -153 147 -1160 -96 79 217 -1160 -1160 -21 -21 -96 -128 156 117 -96 -1160 117 186 -1160 -328 64 47 -169 -28 105 211 -1160 -169 -95 186 -1160 -328 64 156 -169 -70 -21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATRRAWATWADAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 31 E= 1.7e-020 0.935484 0.000000 0.000000 0.064516 0.967742 0.000000 0.000000 0.032258 0.838710 0.161290 0.000000 0.000000 0.193548 0.096774 0.000000 0.709677 0.612903 0.000000 0.387097 0.000000 0.483871 0.000000 0.322581 0.193548 0.677419 0.064516 0.193548 0.064516 0.516129 0.000000 0.161290 0.322581 0.838710 0.000000 0.000000 0.161290 0.161290 0.161290 0.129032 0.548387 0.419355 0.161290 0.000000 0.419355 0.677419 0.000000 0.032258 0.290323 0.258065 0.096774 0.258065 0.387097 0.806452 0.000000 0.096774 0.096774 0.677419 0.000000 0.032258 0.290323 0.548387 0.096774 0.193548 0.161290 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATRRAWATWADAAA MEME-3 regular expression -------------------------------------------------------------------------------- AAAT[AG][AG]A[AT]AT[AT][AT][TAG]A[AT]A -------------------------------------------------------------------------------- Time 1495.01 secs. ******************************************************************************** ******************************************************************************** MOTIF TATTTTGGGTACTTTGATATTKTATGTACAG MEME-4 width = 31 sites = 5 llr = 189 E-value = 8.6e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATTTTGGGTACTTTGATATTKTATGTACAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a2::::2:26:::2:a:a::::a:2:a282 pos.-specific C ::2:::::2:28:::::::2::::::::8:: probability G :::::2a68::::::8:2:::4:::82:::8 matrix T a:6aa8:2:822aa82:8:8a6a:a:8::2: bits 2.4 ** ** ** * * * *** * 2.2 ** ** ** * * * *** * 1.9 ** ** ** * * * *** * 1.7 ** ** * * *** * * * *** * * Relative 1.5 ** **** * *** ***** *** ** * Entropy 1.2 ** **** * ******************** (54.5 bits) 1.0 ******* *********************** 0.7 ******* *********************** 0.5 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel TATTTTGGGTACTTTGATATTTTATGTACAG consensus A G ACACT AT G C G AG ATA sequence C T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTTTGGGTACTTTGATATTKTATGTACAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chrUn_KI270467v1:2926-34 + 1 1.32e-20 . taatttgggtactttgatattttatgtacag tatgtaatat chrUn_KI270467v1:3129-36 + 49 6.41e-20 ttacaatata tattttgggtactttgatattttatggacag tatataatac chrUn_KI270466v1:125-625 + 66 1.97e-19 atataatata tattttgggtcctttgatattgtatgtacag taca chrUn_KI270467v1:1948-24 + 62 2.29e-18 atataatata tatttggtgtactttgagattttatgtacag aatataat chrUn_KI270467v1:2156-26 + 28 7.84e-15 acagtttggg tactttgacattttatatactgtatataata tgtagtttga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTTTGGGTACTTTGATATTKTATGTACAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrUn_KI270467v1:2926-34 1.3e-20 [+4]_69 chrUn_KI270467v1:3129-36 6.4e-20 48_[+4]_21 chrUn_KI270466v1:125-625 2e-19 65_[+4]_4 chrUn_KI270467v1:1948-24 2.3e-18 61_[+4]_8 chrUn_KI270467v1:2156-26 7.8e-15 27_[+4]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTTTGGGTACTTTGATATTKTATGTACAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATTTTGGGTACTTTGATATTKTATGTACAG width=31 seqs=5 chrUn_KI270467v1:2926-34 ( 1) TAATTTGGGTACTTTGATATTTTATGTACAG 1 chrUn_KI270467v1:3129-36 ( 49) TATTTTGGGTACTTTGATATTTTATGGACAG 1 chrUn_KI270466v1:125-625 ( 66) TATTTTGGGTCCTTTGATATTGTATGTACAG 1 chrUn_KI270467v1:1948-24 ( 62) TATTTGGTGTACTTTGAGATTTTATGTACAG 1 chrUn_KI270467v1:2156-26 ( 28) TACTTTGACATTTTATATACTGTATATAATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTTTGGGTACTTTGATATTKTATGTACAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 13.9795 E= 8.6e-014 -897 -897 -897 242 242 -897 -897 -897 10 -65 -897 168 -897 -897 -897 242 -897 -897 -897 242 -897 -897 -65 210 -897 -897 167 -897 10 -897 94 10 -897 -65 135 -897 10 -897 -897 210 168 -65 -897 10 -897 135 -897 10 -897 -897 -897 242 -897 -897 -897 242 10 -897 -897 210 -897 -897 135 10 242 -897 -897 -897 -897 -897 -65 210 242 -897 -897 -897 -897 -65 -897 210 -897 -897 -897 242 -897 -897 35 168 -897 -897 -897 242 242 -897 -897 -897 -897 -897 -897 242 10 -897 135 -897 -897 -897 -65 210 242 -897 -897 -897 10 135 -897 -897 210 -897 -897 10 10 -897 135 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTTTGGGTACTTTGATATTKTATGTACAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 5 E= 8.6e-014 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.200000 0.000000 0.600000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 1.000000 0.000000 0.200000 0.000000 0.600000 0.200000 0.000000 0.200000 0.800000 0.000000 0.200000 0.000000 0.000000 0.800000 0.600000 0.200000 0.000000 0.200000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.200000 0.000000 0.000000 0.800000 0.000000 0.000000 0.800000 0.200000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.800000 1.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.200000 0.000000 0.800000 0.000000 0.000000 0.000000 0.200000 0.800000 1.000000 0.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.800000 0.000000 0.000000 0.200000 0.200000 0.000000 0.800000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTTTGGGTACTTTGATATTKTATGTACAG MEME-4 regular expression -------------------------------------------------------------------------------- TA[TAC]TT[TG]G[GAT][GC][TA][ACT][CT]TT[TA][GT]A[TG]A[TC]T[TG]TAT[GA][TG]A[CA][AT][GA] -------------------------------------------------------------------------------- Time 1939.64 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTGTGTG MEME-5 width = 12 sites = 29 llr = 335 E-value = 1.4e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTGTGTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 1::2::1::::: pos.-specific C ::3:1::11:1: probability G 2a17:a:9:9:9 matrix T 7:719:9:8191 bits 2.4 2.2 * 1.9 * * * 1.7 *** * Relative 1.5 * *** *** Entropy 1.2 * *** **** (16.7 bits) 1.0 *** ******** 0.7 *** ******** 0.5 ************ 0.2 ************ 0.0 ------------ Multilevel TGTGTGTGTGTG consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr6:111568239-111568739 + 1 3.97e-08 . tgtgtgtgtgtg tgtgtgtgtg chr1:156660143-156660643 + 88 1.54e-07 tgtacgcgca tgcgtgtgtgtg a chr15:74223468-74223968 - 89 1.54e-07 . TGCGTGTGTGTG TGTGTGTGTG chr1:150235816-150236316 - 49 2.44e-07 AGGAACTGCG GGTGTGTGTGTG TATGTGTGTG chr19:36489000-36489500 - 62 2.44e-07 TGTGGCTGCT GGTGTGTGTGTG AGAGGGAGCA chr1:201435681-201436181 + 5 3.87e-07 TTGG TGCATGTGTGTG CATGTGTGTG chr1:109100079-109100579 + 14 5.47e-07 GACGCGTGAG TGTGTGAGTGTG CGCGCTTGGA chr1:40691595-40692095 + 74 5.47e-07 TGAGCAGAGG TGTGTGAGTGTG CGGGAGTTTC chr15:70097553-70098053 - 15 7.68e-07 GTGTGTGTGT TGGGTGTGTGTG TTTTGGGGGT chr19:36772320-36772820 - 30 7.68e-07 GCGCCCGGAG TGGGTGTGTGTG TCCTGGACGA chr15:75023461-75023961 + 59 1.05e-06 GGTCCACGGC TGTCTGTGTGTG TCCTTATTTT chr19:40090497-40090997 - 44 1.05e-06 CGGATCCCCA GGCGTGTGTGTG CGCGGGTATC chr5:121961486-121961986 - 54 1.05e-06 TTCAAGATTC GGTTTGTGTGTG TGTGTGTGTG chr18:58781638-58782138 + 15 1.29e-06 gtgtgtggtg tgtatgtgcgtg gtgtgtgatt chr6:134052040-134052540 - 46 1.63e-06 TCTTGAGTCC CGTGTGTGTGTG TGTGTGTGTG chr18:33578964-33579464 + 41 1.63e-06 GCTAGGTGGT TGCGTGTCTGTG TGCCATGTCG chr1:184386540-184387040 - 20 1.68e-06 TGTGTGTGTG TGTACGTGTGTG CGCGCGCGCC chr1:40257838-40258338 + 62 2.41e-06 CAAGGGGAAG AGTGTGTCTGTG ACACTGCCAG chr5:116574668-116575168 + 82 2.72e-06 AGAGCTGTGG TGTATGTGAGTG CGAGTGA chr5:119452330-119452830 + 14 2.72e-06 CGGCTCTGCT TGTTCGTGTGTG TGTCGTTGCA chr14:90383175-90383675 + 59 3.47e-06 ACCGCGTTCC GGTGCGTGTGTG ACGACACCGC chr15:74546128-74546628 + 62 4.21e-06 GGCCAGCGTC TGCGTGTGTGCG GTCGTTCCTA chr1:244047800-244048300 + 50 4.21e-06 TACGTTCAAA AGTGTGTTTGTG GTTGTCACAG chr1:85297854-85298354 - 81 4.54e-06 AATCCTCG TGTATGTGTTTT TAAAAGTCCG chr12:57112008-57112508 - 46 7.03e-06 GTTGAGCAAG ACTGTGTGTGTG TGTGTGTGTG chr3:15601823-15602323 + 18 8.07e-06 TTGCTGGGGC TGTTTGTGCGTT GCTGCTGTGC chr1:88891292-88891792 - 42 8.49e-06 TCCTGCTTTC GGTGTGTCTGTT GTGTCTTGTT chr3:11846575-11847075 - 6 1.14e-05 CCCCAATCCT TGCGTGTGCTTG CAGTC chr13:75480661-75481161 - 3 2.36e-05 TGTGTGTGCG TGCGTGTGCGCG CG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:111568239-111568739 4e-08 [+5]_88 chr1:156660143-156660643 1.5e-07 87_[+5]_1 chr15:74223468-74223968 1.5e-07 88_[-5] chr1:150235816-150236316 2.4e-07 48_[-5]_40 chr19:36489000-36489500 2.4e-07 61_[-5]_27 chr1:201435681-201436181 3.9e-07 4_[+5]_84 chr1:109100079-109100579 5.5e-07 13_[+5]_75 chr1:40691595-40692095 5.5e-07 73_[+5]_15 chr15:70097553-70098053 7.7e-07 14_[-5]_74 chr19:36772320-36772820 7.7e-07 29_[-5]_59 chr15:75023461-75023961 1.1e-06 58_[+5]_30 chr19:40090497-40090997 1.1e-06 43_[-5]_45 chr5:121961486-121961986 1.1e-06 53_[-5]_35 chr18:58781638-58782138 1.3e-06 14_[+5]_74 chr6:134052040-134052540 1.6e-06 45_[-5]_43 chr18:33578964-33579464 1.6e-06 40_[+5]_48 chr1:184386540-184387040 1.7e-06 19_[-5]_69 chr1:40257838-40258338 2.4e-06 61_[+5]_27 chr5:116574668-116575168 2.7e-06 81_[+5]_7 chr5:119452330-119452830 2.7e-06 13_[+5]_75 chr14:90383175-90383675 3.5e-06 58_[+5]_30 chr15:74546128-74546628 4.2e-06 61_[+5]_27 chr1:244047800-244048300 4.2e-06 49_[+5]_39 chr1:85297854-85298354 4.5e-06 80_[-5]_8 chr12:57112008-57112508 7e-06 45_[-5]_43 chr3:15601823-15602323 8.1e-06 17_[+5]_71 chr1:88891292-88891792 8.5e-06 41_[-5]_47 chr3:11846575-11847075 1.1e-05 5_[-5]_83 chr13:75480661-75481161 2.4e-05 2_[-5]_86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTGTGTG width=12 seqs=29 chr6:111568239-111568739 ( 1) TGTGTGTGTGTG 1 chr1:156660143-156660643 ( 88) TGCGTGTGTGTG 1 chr15:74223468-74223968 ( 89) TGCGTGTGTGTG 1 chr1:150235816-150236316 ( 49) GGTGTGTGTGTG 1 chr19:36489000-36489500 ( 62) GGTGTGTGTGTG 1 chr1:201435681-201436181 ( 5) TGCATGTGTGTG 1 chr1:109100079-109100579 ( 14) TGTGTGAGTGTG 1 chr1:40691595-40692095 ( 74) TGTGTGAGTGTG 1 chr15:70097553-70098053 ( 15) TGGGTGTGTGTG 1 chr19:36772320-36772820 ( 30) TGGGTGTGTGTG 1 chr15:75023461-75023961 ( 59) TGTCTGTGTGTG 1 chr19:40090497-40090997 ( 44) GGCGTGTGTGTG 1 chr5:121961486-121961986 ( 54) GGTTTGTGTGTG 1 chr18:58781638-58782138 ( 15) TGTATGTGCGTG 1 chr6:134052040-134052540 ( 46) CGTGTGTGTGTG 1 chr18:33578964-33579464 ( 41) TGCGTGTCTGTG 1 chr1:184386540-184387040 ( 20) TGTACGTGTGTG 1 chr1:40257838-40258338 ( 62) AGTGTGTCTGTG 1 chr5:116574668-116575168 ( 82) TGTATGTGAGTG 1 chr5:119452330-119452830 ( 14) TGTTCGTGTGTG 1 chr14:90383175-90383675 ( 59) GGTGCGTGTGTG 1 chr15:74546128-74546628 ( 62) TGCGTGTGTGCG 1 chr1:244047800-244048300 ( 50) AGTGTGTTTGTG 1 chr1:85297854-85298354 ( 81) TGTATGTGTTTT 1 chr12:57112008-57112508 ( 46) ACTGTGTGTGTG 1 chr3:15601823-15602323 ( 18) TGTTTGTGCGTT 1 chr1:88891292-88891792 ( 42) GGTGTGTCTGTT 1 chr3:11846575-11847075 ( 6) TGCGTGTGCTTG 1 chr13:75480661-75481161 ( 3) TGCGTGTGCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53400 bayes= 11.4868 E= 1.4e-005 -85 -318 -60 181 -1150 -318 162 -1150 -1150 -18 -218 181 -11 -318 114 -85 -1150 -160 -1150 226 -1150 -1150 167 -1150 -143 -1150 -1150 232 -1150 -160 146 -243 -243 -118 -1150 215 -1150 -1150 157 -143 -1150 -218 -1150 232 -1150 -1150 152 -85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 29 E= 1.4e-005 0.103448 0.034483 0.206897 0.655172 0.000000 0.034483 0.965517 0.000000 0.000000 0.275862 0.068966 0.655172 0.172414 0.034483 0.689655 0.103448 0.000000 0.103448 0.000000 0.896552 0.000000 0.000000 1.000000 0.000000 0.068966 0.000000 0.000000 0.931034 0.000000 0.103448 0.862069 0.034483 0.034483 0.137931 0.000000 0.827586 0.000000 0.000000 0.931034 0.068966 0.000000 0.068966 0.000000 0.931034 0.000000 0.000000 0.896552 0.103448 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTGTGTG MEME-5 regular expression -------------------------------------------------------------------------------- [TG]G[TC]GTGTGTGTG -------------------------------------------------------------------------------- Time 2388.37 secs. ******************************************************************************** ******************************************************************************** MOTIF RTTTATKTTTDRNRSWGTBTND MEME-6 width = 22 sites = 16 llr = 248 E-value = 3.8e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif RTTTATKTTTDRNRSWGTBTND MEME-6 Description -------------------------------------------------------------------------------- Simplified A 62::61:::3262424231324 pos.-specific C ::::1:1::111323:2:3:2: probability G 4:1::24:3:34345:6:4:33 matrix T 189a375a774:3:16:73833 bits 2.4 * * 2.2 * * 1.9 ** * 1.7 *** * * Relative 1.5 *** * * * * Entropy 1.2 *** *** * * * (22.4 bits) 1.0 ****** *** * * * 0.7 ********** * * * * * 0.5 ********** * * *** * * 0.2 ************ ***** * * 0.0 ---------------------- Multilevel ATTTATTTTTTAGGGTGTGTGA consensus G T G GAGGCACA ACATT sequence T T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTTTATKTTTDRNRSWGTBTND MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr19:40567075-40567575 - 10 8.87e-11 TTATTTATTT ATTTATTTTTGAGACAGTCTTG CTCTGTCGC chr5:160008634-160009134 - 4 3.39e-10 TTATTTATTT ATTTATTTTTGAGACAGAGTCT CAG chr9:85743206-85743706 + 39 4.63e-10 AGAGTGAGTG ATTTATGTTTTGCGGTAATTAA GAACTTAGAG chr9:33474197-33474697 + 69 3.18e-09 ttatttattt atttatttTTGGAGTagtcttg ctctgtcgcc chr5:34182251-34182751 - 10 8.18e-09 TTATTTATTT ATTTATTTGTGATGGTCTCACT CTGTCACCC chr1:6404487-6404987 - 7 1.14e-08 TTATTTATTT ATTTATTTGAGACGGAGTCTCG CTCTGT chr7:135716582-135717082 + 38 1.40e-08 cttcacggag gattaagttatatagtgtgtgt aaatgacctc chr19:36214222-36214722 - 1 2.57e-08 GTGTCTGGTG GTTTTTGTGTAACCATGTGTGA chr7:133492167-133492667 + 6 4.90e-08 AAGAG GAGTAGTTTTTATGGAGTGTTA GATAGGGGTA chr5:175378363-175378863 + 65 5.83e-08 tgttgaagca atttatgttttcagctcataaa acctcttgga chr5:134370985-134371485 + 54 7.51e-08 ACGGGATAGT GTTTCTGTTTCGTGGTCTTTGA ATCCACAACC chr15:101945846-10194634 + 73 9.57e-08 ttatttattt attttacttttgacatatttgt gttact chr12:6470328-6470828 + 2 9.57e-08 C ATTTTTCTGACAGAGAGAGTGA GGGTCTGTTC chr15:99565602-99566102 - 9 2.84e-07 CTCCCCATCA GTTTCTTTTCAGGACTGAATTA TCCTCTCG chr1:233635927-233636427 + 53 3.90e-07 aggatgttag gttttgttgtaagcaagtgaag ttgaggagta chr1:16727192-16727692 - 16 6.93e-07 CTAAATGCAC TATTAGGTTATGCAGTATAATT TTGCAGCGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTTTATKTTTDRNRSWGTBTND MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:40567075-40567575 8.9e-11 9_[-6]_69 chr5:160008634-160009134 3.4e-10 3_[-6]_75 chr9:85743206-85743706 4.6e-10 38_[+6]_40 chr9:33474197-33474697 3.2e-09 68_[+6]_10 chr5:34182251-34182751 8.2e-09 9_[-6]_69 chr1:6404487-6404987 1.1e-08 6_[-6]_72 chr7:135716582-135717082 1.4e-08 37_[+6]_41 chr19:36214222-36214722 2.6e-08 [-6]_78 chr7:133492167-133492667 4.9e-08 5_[+6]_73 chr5:175378363-175378863 5.8e-08 64_[+6]_14 chr5:134370985-134371485 7.5e-08 53_[+6]_25 chr15:101945846-10194634 9.6e-08 72_[+6]_6 chr12:6470328-6470828 9.6e-08 1_[+6]_77 chr15:99565602-99566102 2.8e-07 8_[-6]_70 chr1:233635927-233636427 3.9e-07 52_[+6]_26 chr1:16727192-16727692 6.9e-07 15_[-6]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTTTATKTTTDRNRSWGTBTND MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RTTTATKTTTDRNRSWGTBTND width=22 seqs=16 chr19:40567075-40567575 ( 10) ATTTATTTTTGAGACAGTCTTG 1 chr5:160008634-160009134 ( 4) ATTTATTTTTGAGACAGAGTCT 1 chr9:85743206-85743706 ( 39) ATTTATGTTTTGCGGTAATTAA 1 chr9:33474197-33474697 ( 69) ATTTATTTTTGGAGTAGTCTTG 1 chr5:34182251-34182751 ( 10) ATTTATTTGTGATGGTCTCACT 1 chr1:6404487-6404987 ( 7) ATTTATTTGAGACGGAGTCTCG 1 chr7:135716582-135717082 ( 38) GATTAAGTTATATAGTGTGTGT 1 chr19:36214222-36214722 ( 1) GTTTTTGTGTAACCATGTGTGA 1 chr7:133492167-133492667 ( 6) GAGTAGTTTTTATGGAGTGTTA 1 chr5:175378363-175378863 ( 65) ATTTATGTTTTCAGCTCATAAA 1 chr5:134370985-134371485 ( 54) GTTTCTGTTTCGTGGTCTTTGA 1 chr15:101945846-10194634 ( 73) ATTTTACTTTTGACATATTTGT 1 chr12:6470328-6470828 ( 2) ATTTTTCTGACAGAGAGAGTGA 1 chr15:99565602-99566102 ( 9) GTTTCTTTTCAGGACTGAATTA 1 chr1:233635927-233636427 ( 53) GTTTTGTTGTAAGCAAGTGAAG 1 chr1:16727192-16727692 ( 16) TATTAGGTTATGCAGTATAATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTTTATKTTTDRNRSWGTBTND MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 13.2694 E= 3.8e-003 159 -1064 26 -158 1 -1064 -1064 212 -1064 -1064 -232 233 -1064 -1064 -1064 242 174 -133 -1064 42 -58 -1064 -74 188 -1064 -133 26 142 -1064 -1064 -1064 242 -1064 -1064 0 188 42 -232 -1064 188 1 -133 0 101 159 -232 26 -1064 1 -33 0 42 101 -74 48 -1064 1 -33 67 -158 123 -1064 -1064 159 1 -74 99 -1064 74 -1064 -1064 188 -58 -33 26 42 42 -1064 -1064 201 1 -74 0 74 123 -1064 -33 74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTTTATKTTTDRNRSWGTBTND MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 16 E= 3.8e-003 0.562500 0.000000 0.375000 0.062500 0.187500 0.000000 0.000000 0.812500 0.000000 0.000000 0.062500 0.937500 0.000000 0.000000 0.000000 1.000000 0.625000 0.125000 0.000000 0.250000 0.125000 0.000000 0.187500 0.687500 0.000000 0.125000 0.375000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.312500 0.687500 0.250000 0.062500 0.000000 0.687500 0.187500 0.125000 0.312500 0.375000 0.562500 0.062500 0.375000 0.000000 0.187500 0.250000 0.312500 0.250000 0.375000 0.187500 0.437500 0.000000 0.187500 0.250000 0.500000 0.062500 0.437500 0.000000 0.000000 0.562500 0.187500 0.187500 0.625000 0.000000 0.312500 0.000000 0.000000 0.687500 0.125000 0.250000 0.375000 0.250000 0.250000 0.000000 0.000000 0.750000 0.187500 0.187500 0.312500 0.312500 0.437500 0.000000 0.250000 0.312500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTTTATKTTTDRNRSWGTBTND MEME-6 regular expression -------------------------------------------------------------------------------- [AG]TTT[AT]T[TG]T[TG][TA][TG][AG][GCT][GA][GC][TA]G[TA][GCT][TA][GT][ATG] -------------------------------------------------------------------------------- Time 2834.53 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAAGMGRGRGWGVGRARGRGW MEME-7 width = 22 sites = 41 llr = 489 E-value = 6.8e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAAGMGRGRGWGVGRARGRGW MEME-7 Description -------------------------------------------------------------------------------- Simplified A :376:61425:4:3147415:6 pos.-specific C ::11331:1:11131::12::: probability G 97237184739293853464a: matrix T 1::::::1:2:3::::::11:3 bits 2.4 2.2 1.9 1.7 Relative 1.5 * Entropy 1.2 * * ** (17.2 bits) 1.0 *** * * ** ** 0.7 *** *** ** * *** *** 0.5 ************* **** *** 0.2 ********************** 0.0 ---------------------- Multilevel GGAAGAGGGAGAGAGGAAGAGA consensus A GCC AAG T G AGGCG T sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGMGRGRGWGVGRARGRGW MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr1:201435681-201436181 + 69 3.16e-11 tgtgtgtgtg tgAagagagagagagaaacaga gagagaaagg chr1:155244582-155245082 + 68 3.87e-10 gagagcgagc gagagagagagagagagagaga ggagCCGGCG chr17:45148320-45148820 + 36 2.26e-09 gtgggaaggg ggaggagggagggaggaaaaga ggaggaggcg chr1:88891292-88891792 + 61 2.84e-08 ACCGAAAGCA GGAAGCGAATGTGGCGAAGAGA CGCGCAGAGA chr6:138988034-138988534 + 56 3.25e-08 TGTGAGGCCG Ggaggagagagcgcgagaggga gagagaAACA chr1:26620817-26621317 + 3 4.81e-08 GG GGAACGAAAAGAGCAAAAGAGA ACAACGTGTT chr1:173714790-173715290 + 17 1.02e-07 Cggcggtgga ggaggaggcagagaggagtgga gggcggagta chr1:155017241-155017741 - 66 1.29e-07 ACCTGGGCGG GGAGGAGATGGGGAGGAGGAGA AGAGGGTAGG chr1:179882513-179883013 + 74 1.45e-07 CCGATTCTGC GAAAGAGGAAGTGAGAGAAAGC GCGTA chr13:40770980-40771480 - 13 1.83e-07 GGCCGGAAGC GGAAGAGAGGGCGGGGACGTGT TTGGCAGCGG chr10:73413703-73414203 + 68 2.57e-07 AGACCACCGA GGCAGACGAGGTGGGAAAGGGA GGGGGGCGCC chr1:213987975-213988475 - 72 2.88e-07 GGGAGAG GGGAGAGAGAGGCGGGAGGGGA GGGGAGACGA chr19:40715357-40715857 - 41 3.58e-07 CGAGAGAGTT GAAGGCGTGAGCGGGAAACAGT TGGCAAGCAA chr13:113296704-11329720 - 29 3.98e-07 GAGTAGTGGC GGGAGAAAGTGAGGAAAGAGGA AGCCCGCGAG chr12:123458057-12345855 + 6 3.98e-07 GAGAA GGAAGAGGGAGTGCGGCCCAGA CGCTGTGCCC chr19:33080925-33081425 + 79 4.92e-07 ATGGCGGCGC GGGACAGTGACAGCGAAGAAGA chr14:22982595-22983095 + 32 7.43e-07 ATTGGAATAG GAAAGAGTGTGGGGGTAGGGGA CGGGGACTCT chr1:167714392-167714892 + 69 1.10e-06 GTGGTTGCTC GGAACACGAGGTGAGAGGCGGA ACAAGGCTGA chr4:24472607-24473107 + 26 1.21e-06 AGACCGCAGG GGAAGCGAGAGGGCGAGATAAT GAGCGAGCCG chr1:31944434-31944934 + 29 1.47e-06 CGCCTTTGGG GGAGGGGAGGGAGTGAAGCTGT GAATTCCGGG chr1:108746545-108747045 + 36 1.47e-06 AGCGTCGTGT GGCAGAGTGAGTGCGGTGGGGT AGGGGTTGAG chr17:7484173-7484673 + 46 1.77e-06 GGCGGCTCCC GGAAGGGGGAGAGACAAACTGC CGTAACCTCT chr5:73216004-73216504 + 18 1.77e-06 ATGGCCGCAT GGGGGCAGGAGAGAGGAGCTGT GGCGCAGAGC chr19:38264455-38264955 + 2 2.33e-06 C GAGGGCGCGAGTGAGGAGCAGA CCCAGGCATC chr5:40834977-40835477 + 25 2.55e-06 TCTGCGGCCG AGACCAGAAAGACCGGAAGAGA AGGCACTTCC chr1:151790087-151790587 - 11 2.78e-06 ACGGAAATGC GGGAGCGAGGGAAGGGAGGGGT CTGGCGTGCC chr6:7389385-7389885 + 18 2.78e-06 CCTGCCGCAG TAAACACAAAGTGGGGTACAGA AACGAAAACT chr11:47578712-47579212 - 7 3.04e-06 TGAAAGGAGG GAACGCAGGTGAGAAAGCGAGA CAGGCA chr1:25998118-25998618 - 65 3.31e-06 GAGGACTATT TGAGGAGGGTGAGGCGGAGGGT TACGCACGGG chr2:3574930-3575430 - 52 3.31e-06 GAGAGTCCCA GGAAGCGGCTCTGGGGACGAGT GTCTTGGTAA chr10:27998261-27998761 + 5 3.61e-06 AGGA GAAAGACGGGCTGGGGGAAGGA GAGGCAGGGA chr1:109483990-109484490 - 50 3.93e-06 GCAGGCGCTA GGACCCGGAGGCGCGAAGGTGA CGGAGCGGGC chr3:23917022-23917522 + 78 5.05e-06 AGTTTGGTCA GGATGCGGGACAGCAAAGGGGT G chr19:40090497-40090997 - 71 5.05e-06 CAGAGTAG GAACCCGGGGGTGCAGACGGGA TCTGCCGGAT chr10:93702404-93702904 + 72 5.48e-06 ACAGCTCCGG GAAACAAGGGCAGCGGGAGAAA CGGCCCG chr17:36545475-36545975 + 71 6.98e-06 CGTGGCAGTG TGCAGGGACGGGGAGGAGGAGT TCCCCTTC chr13:30617592-30618092 - 33 8.17e-06 ACGGTGGCGT GGCGGGGAAGGTGAAGACGTGA GCACTTCCGG chr1:65420609-65421109 - 38 8.17e-06 ATCGCCTCCC GAACCGGAGAGGCGGGAAGGGT GGTGAGGCCG chr6:36594150-36594650 + 25 8.83e-06 CCATTTCGTG GACGCCGGGTGAGTGAGAGAGT TGGTTGGTGT chr1:223846118-223846618 + 64 1.11e-05 CCGCGCCGCT GGGCCAGGCGGAGAGAGGCGGA CGGACTTCAG chr15:69452751-69453251 - 26 1.72e-05 CTCATCGTCG TGCAGAATGAGGGCCGAGTAGA TGCAGGCGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGMGRGRGWGVGRARGRGW MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:201435681-201436181 3.2e-11 68_[+7]_10 chr1:155244582-155245082 3.9e-10 67_[+7]_11 chr17:45148320-45148820 2.3e-09 35_[+7]_43 chr1:88891292-88891792 2.8e-08 60_[+7]_18 chr6:138988034-138988534 3.2e-08 55_[+7]_23 chr1:26620817-26621317 4.8e-08 2_[+7]_76 chr1:173714790-173715290 1e-07 16_[+7]_62 chr1:155017241-155017741 1.3e-07 65_[-7]_13 chr1:179882513-179883013 1.5e-07 73_[+7]_5 chr13:40770980-40771480 1.8e-07 12_[-7]_66 chr10:73413703-73414203 2.6e-07 67_[+7]_11 chr1:213987975-213988475 2.9e-07 71_[-7]_7 chr19:40715357-40715857 3.6e-07 40_[-7]_38 chr13:113296704-11329720 4e-07 28_[-7]_50 chr12:123458057-12345855 4e-07 5_[+7]_73 chr19:33080925-33081425 4.9e-07 78_[+7] chr14:22982595-22983095 7.4e-07 31_[+7]_47 chr1:167714392-167714892 1.1e-06 68_[+7]_10 chr4:24472607-24473107 1.2e-06 25_[+7]_53 chr1:31944434-31944934 1.5e-06 28_[+7]_50 chr1:108746545-108747045 1.5e-06 35_[+7]_43 chr17:7484173-7484673 1.8e-06 45_[+7]_33 chr5:73216004-73216504 1.8e-06 17_[+7]_61 chr19:38264455-38264955 2.3e-06 1_[+7]_77 chr5:40834977-40835477 2.5e-06 24_[+7]_54 chr1:151790087-151790587 2.8e-06 10_[-7]_68 chr6:7389385-7389885 2.8e-06 17_[+7]_61 chr11:47578712-47579212 3e-06 6_[-7]_72 chr1:25998118-25998618 3.3e-06 64_[-7]_14 chr2:3574930-3575430 3.3e-06 51_[-7]_27 chr10:27998261-27998761 3.6e-06 4_[+7]_74 chr1:109483990-109484490 3.9e-06 49_[-7]_29 chr3:23917022-23917522 5.1e-06 77_[+7]_1 chr19:40090497-40090997 5.1e-06 70_[-7]_8 chr10:93702404-93702904 5.5e-06 71_[+7]_7 chr17:36545475-36545975 7e-06 70_[+7]_8 chr13:30617592-30618092 8.2e-06 32_[-7]_46 chr1:65420609-65421109 8.2e-06 37_[-7]_41 chr6:36594150-36594650 8.8e-06 24_[+7]_54 chr1:223846118-223846618 1.1e-05 63_[+7]_15 chr15:69452751-69453251 1.7e-05 25_[-7]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGMGRGRGWGVGRARGRGW MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAAGMGRGRGWGVGRARGRGW width=22 seqs=41 chr1:201435681-201436181 ( 69) TGAAGAGAGAGAGAGAAACAGA 1 chr1:155244582-155245082 ( 68) GAGAGAGAGAGAGAGAGAGAGA 1 chr17:45148320-45148820 ( 36) GGAGGAGGGAGGGAGGAAAAGA 1 chr1:88891292-88891792 ( 61) GGAAGCGAATGTGGCGAAGAGA 1 chr6:138988034-138988534 ( 56) GGAGGAGAGAGCGCGAGAGGGA 1 chr1:26620817-26621317 ( 3) GGAACGAAAAGAGCAAAAGAGA 1 chr1:173714790-173715290 ( 17) GGAGGAGGCAGAGAGGAGTGGA 1 chr1:155017241-155017741 ( 66) GGAGGAGATGGGGAGGAGGAGA 1 chr1:179882513-179883013 ( 74) GAAAGAGGAAGTGAGAGAAAGC 1 chr13:40770980-40771480 ( 13) GGAAGAGAGGGCGGGGACGTGT 1 chr10:73413703-73414203 ( 68) GGCAGACGAGGTGGGAAAGGGA 1 chr1:213987975-213988475 ( 72) GGGAGAGAGAGGCGGGAGGGGA 1 chr19:40715357-40715857 ( 41) GAAGGCGTGAGCGGGAAACAGT 1 chr13:113296704-11329720 ( 29) GGGAGAAAGTGAGGAAAGAGGA 1 chr12:123458057-12345855 ( 6) GGAAGAGGGAGTGCGGCCCAGA 1 chr19:33080925-33081425 ( 79) GGGACAGTGACAGCGAAGAAGA 1 chr14:22982595-22983095 ( 32) GAAAGAGTGTGGGGGTAGGGGA 1 chr1:167714392-167714892 ( 69) GGAACACGAGGTGAGAGGCGGA 1 chr4:24472607-24473107 ( 26) GGAAGCGAGAGGGCGAGATAAT 1 chr1:31944434-31944934 ( 29) GGAGGGGAGGGAGTGAAGCTGT 1 chr1:108746545-108747045 ( 36) GGCAGAGTGAGTGCGGTGGGGT 1 chr17:7484173-7484673 ( 46) GGAAGGGGGAGAGACAAACTGC 1 chr5:73216004-73216504 ( 18) GGGGGCAGGAGAGAGGAGCTGT 1 chr19:38264455-38264955 ( 2) GAGGGCGCGAGTGAGGAGCAGA 1 chr5:40834977-40835477 ( 25) AGACCAGAAAGACCGGAAGAGA 1 chr1:151790087-151790587 ( 11) GGGAGCGAGGGAAGGGAGGGGT 1 chr6:7389385-7389885 ( 18) TAAACACAAAGTGGGGTACAGA 1 chr11:47578712-47579212 ( 7) GAACGCAGGTGAGAAAGCGAGA 1 chr1:25998118-25998618 ( 65) TGAGGAGGGTGAGGCGGAGGGT 1 chr2:3574930-3575430 ( 52) GGAAGCGGCTCTGGGGACGAGT 1 chr10:27998261-27998761 ( 5) GAAAGACGGGCTGGGGGAAGGA 1 chr1:109483990-109484490 ( 50) GGACCCGGAGGCGCGAAGGTGA 1 chr3:23917022-23917522 ( 78) GGATGCGGGACAGCAAAGGGGT 1 chr19:40090497-40090997 ( 71) GAACCCGGGGGTGCAGACGGGA 1 chr10:93702404-93702904 ( 72) GAAACAAGGGCAGCGGGAGAAA 1 chr17:36545475-36545975 ( 71) TGCAGGGACGGGGAGGAGGAGT 1 chr13:30617592-30618092 ( 33) GGCGGGGAAGGTGAAGACGTGA 1 chr1:65420609-65421109 ( 38) GAACCGGAGAGGCGGGAAGGGT 1 chr6:36594150-36594650 ( 25) GACGCCGGGTGAGTGAGAGAGT 1 chr1:223846118-223846618 ( 64) GGGCCAGGCGGAGAGAGGCGGA 1 chr15:69452751-69453251 ( 26) TGCAGAATGAGGGCCGAGTAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGMGRGRGWGVGRARGRGW MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 10.4526 E= 6.8e-006 -293 -1200 144 -61 65 -1200 117 -1200 182 -110 -68 -1200 159 -110 -22 -293 -1200 -22 122 -1200 159 -10 -110 -1200 -35 -168 127 -1200 115 -368 49 -61 24 -168 107 -293 146 -1200 2 -13 -1200 -136 149 -1200 115 -168 -68 65 -293 -210 153 -1200 87 -10 2 -193 -35 -168 127 -1200 123 -1200 78 -293 182 -368 -22 -193 123 -110 40 -1200 -61 -36 84 -135 139 -1200 22 -35 -193 -1200 160 -1200 177 -268 -1200 77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGMGRGRGWGVGRARGRGW MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 41 E= 6.8e-006 0.024390 0.000000 0.853659 0.121951 0.292683 0.000000 0.707317 0.000000 0.658537 0.146341 0.195122 0.000000 0.560976 0.146341 0.268293 0.024390 0.000000 0.268293 0.731707 0.000000 0.560976 0.292683 0.146341 0.000000 0.146341 0.097561 0.756098 0.000000 0.414634 0.024390 0.439024 0.121951 0.219512 0.097561 0.658537 0.024390 0.512195 0.000000 0.317073 0.170732 0.000000 0.121951 0.878049 0.000000 0.414634 0.097561 0.195122 0.292683 0.024390 0.073171 0.902439 0.000000 0.341463 0.292683 0.317073 0.048780 0.146341 0.097561 0.756098 0.000000 0.439024 0.000000 0.536585 0.024390 0.658537 0.024390 0.268293 0.048780 0.439024 0.146341 0.414634 0.000000 0.121951 0.243902 0.560976 0.073171 0.487805 0.000000 0.365854 0.146341 0.048780 0.000000 0.951220 0.000000 0.634146 0.048780 0.000000 0.317073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGMGRGRGWGVGRARGRGW MEME-7 regular expression -------------------------------------------------------------------------------- G[GA]A[AG][GC][AC]G[GA][GA][AG]G[AT]G[AGC]G[GA][AG][AG][GC][AG]G[AT] -------------------------------------------------------------------------------- Time 3276.26 secs. ******************************************************************************** ******************************************************************************** MOTIF GKGCHGGRBCCSGGCAGSRGAR MEME-8 width = 22 sites = 16 llr = 240 E-value = 2.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GKGCHGGRBCCSGGCAGSRGAR MEME-8 Description -------------------------------------------------------------------------------- Simplified A 1:::4::4:11111:a214:86 pos.-specific C :::a3:::4773::7::31111 probability G 849:1aa63116792:8549:3 matrix T 161:3:::412:3:1::1::1: bits 2.4 * 2.2 * 1.9 * 1.7 * ** * Relative 1.5 * ** * * Entropy 1.2 *** ** * ** ** (21.6 bits) 1.0 **** *** * ** ** 0.7 **** *** ** ** *** 0.5 ***************** **** 0.2 ***************** **** 0.0 ---------------------- Multilevel GTGCAGGGCCCGGGCAGGAGAA consensus G T AT CT CG G sequence C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCHGGRBCCSGGCAGSRGAR MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr19:35510041-35510541 + 1 6.88e-11 . GTGCTGGATCCCTGCAGGGGAA AGCAAGATTT chr19:1021389-1021889 - 72 1.28e-09 GACGTCA TGGCAGGATCCGGGCAAGAGAA GCCAAACGAG chr1:21345628-21346128 - 5 3.40e-09 TCACACTCCA GTGCAGGAGCCAGGCAGGAGAC AAAG chr5:154038549-154039049 - 43 4.41e-09 CGAGGTTCAG GGGCAGGGCCCGGGCAGCCGAA GTCGTTAGGG chr11:66001999-66002499 + 48 5.00e-09 AAGTCCTTGA GTTCCGGGTCCGGGCAGCAGAG AAAGGAAGTC chr17:63621499-63621999 + 74 2.49e-08 TACACGCCCT GTGCTGGGCACGGGGAGGAGCA GGACG chr5:179678168-179678668 - 50 3.74e-08 CTGCCCCTCG GTGCTGGGTGTCGGCAGGGGAC GCAAGCCTAA chr9:128771796-128772296 - 44 5.49e-08 CCGGCGTAAC GTGCCGGGCCCGGGGAAAGGAG CCGCCCGCCG chr1:226122463-226122963 - 4 6.03e-08 GCGCCCACGC GGGCAGGGCCCGGGCAAGACTA CCT chr17:67993893-67994393 + 59 6.03e-08 GCCGCTAGTG GGGCAGGGGCGCTGCAGAAGAA GGGCTCTGGG chrX:101348634-101349134 - 25 6.03e-08 GGTTACGGGA TTGCGGGGTCCGGGGAGTGGAA CCCGCCGACT chr1:228486602-228487102 + 23 2.66e-07 GGGCGGGTCC GTGCAGGATGAGAGCAGCGGAG GAGGCCCACG chr6:159761946-159762446 + 59 2.66e-07 GGAGCGCCGA GGGCCGGACTTGTGTAGGAGAG GGGCGTATGT chr12:55973997-55974497 + 73 4.94e-07 GGGGAGAAGG GGGCCGGGCCCCGGCAGGCCTA ATGGGG chr1:120176276-120176776 - 67 5.97e-07 AGGGAAGCCA ATTCTGGGGACCGGTAGTGGAA AGCTCTTGCG chr10:17201373-17201873 - 25 1.32e-06 GCCCCTGCGG GTGCTGGAGCTATACAGCGGCG TGGGCGGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCHGGRBCCSGGCAGSRGAR MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:35510041-35510541 6.9e-11 [+8]_78 chr19:1021389-1021889 1.3e-09 71_[-8]_7 chr1:21345628-21346128 3.4e-09 4_[-8]_74 chr5:154038549-154039049 4.4e-09 42_[-8]_36 chr11:66001999-66002499 5e-09 47_[+8]_31 chr17:63621499-63621999 2.5e-08 73_[+8]_5 chr5:179678168-179678668 3.7e-08 49_[-8]_29 chr9:128771796-128772296 5.5e-08 43_[-8]_35 chr1:226122463-226122963 6e-08 3_[-8]_75 chr17:67993893-67994393 6e-08 58_[+8]_20 chrX:101348634-101349134 6e-08 24_[-8]_54 chr1:228486602-228487102 2.7e-07 22_[+8]_56 chr6:159761946-159762446 2.7e-07 58_[+8]_20 chr12:55973997-55974497 4.9e-07 72_[+8]_6 chr1:120176276-120176776 6e-07 66_[-8]_12 chr10:17201373-17201873 1.3e-06 24_[-8]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCHGGRBCCSGGCAGSRGAR MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GKGCHGGRBCCSGGCAGSRGAR width=22 seqs=16 chr19:35510041-35510541 ( 1) GTGCTGGATCCCTGCAGGGGAA 1 chr19:1021389-1021889 ( 72) TGGCAGGATCCGGGCAAGAGAA 1 chr1:21345628-21346128 ( 5) GTGCAGGAGCCAGGCAGGAGAC 1 chr5:154038549-154039049 ( 43) GGGCAGGGCCCGGGCAGCCGAA 1 chr11:66001999-66002499 ( 48) GTTCCGGGTCCGGGCAGCAGAG 1 chr17:63621499-63621999 ( 74) GTGCTGGGCACGGGGAGGAGCA 1 chr5:179678168-179678668 ( 50) GTGCTGGGTGTCGGCAGGGGAC 1 chr9:128771796-128772296 ( 44) GTGCCGGGCCCGGGGAAAGGAG 1 chr1:226122463-226122963 ( 4) GGGCAGGGCCCGGGCAAGACTA 1 chr17:67993893-67994393 ( 59) GGGCAGGGGCGCTGCAGAAGAA 1 chrX:101348634-101349134 ( 25) TTGCGGGGTCCGGGGAGTGGAA 1 chr1:228486602-228487102 ( 23) GTGCAGGATGAGAGCAGCGGAG 1 chr6:159761946-159762446 ( 59) GGGCCGGACTTGTGTAGGAGAG 1 chr12:55973997-55974497 ( 73) GGGCCGGGCCCCGGCAGGCCTA 1 chr1:120176276-120176776 ( 67) ATTCTGGGGACCGGTAGTGGAA 1 chr10:17201373-17201873 ( 25) GTGCTGGAGCTATACAGCGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCHGGRBCCSGGCAGSRGAR MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 11.5321 E= 2.6e+003 -158 -1064 137 -58 -1064 -1064 26 174 -1064 -1064 148 -58 -1064 167 -1064 -1064 101 -33 -232 74 -1064 -1064 167 -1064 -1064 -1064 167 -1064 101 -1064 99 -1064 -1064 26 -33 101 -58 113 -133 -158 -158 113 -232 1 -58 0 84 -1064 -158 -1064 113 42 -158 -1064 158 -1064 -1064 113 -74 -58 242 -1064 -1064 -1064 1 -1064 137 -1064 -58 -33 67 -58 123 -133 48 -1064 -1064 -133 148 -1064 201 -133 -1064 -58 159 -133 0 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCHGGRBCCSGGCAGSRGAR MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 16 E= 2.6e+003 0.062500 0.000000 0.812500 0.125000 0.000000 0.000000 0.375000 0.625000 0.000000 0.000000 0.875000 0.125000 0.000000 1.000000 0.000000 0.000000 0.375000 0.250000 0.062500 0.312500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.375000 0.000000 0.625000 0.000000 0.000000 0.375000 0.250000 0.375000 0.125000 0.687500 0.125000 0.062500 0.062500 0.687500 0.062500 0.187500 0.125000 0.312500 0.562500 0.000000 0.062500 0.000000 0.687500 0.250000 0.062500 0.000000 0.937500 0.000000 0.000000 0.687500 0.187500 0.125000 1.000000 0.000000 0.000000 0.000000 0.187500 0.000000 0.812500 0.000000 0.125000 0.250000 0.500000 0.125000 0.437500 0.125000 0.437500 0.000000 0.000000 0.125000 0.875000 0.000000 0.750000 0.125000 0.000000 0.125000 0.562500 0.125000 0.312500 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGCHGGRBCCSGGCAGSRGAR MEME-8 regular expression -------------------------------------------------------------------------------- G[TG]GC[ATC]GG[GA][CTG]CC[GC][GT]GCAG[GC][AG]GA[AG] -------------------------------------------------------------------------------- Time 3692.52 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCBCCTHGSCCTSMCAMASWGCTGGGAYT MEME-9 width = 30 sites = 4 llr = 126 E-value = 3.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCBCCTHGSCCTSMCAMASWGCTGGGAYT MEME-9 Description -------------------------------------------------------------------------------- Simplified A ::3::::5::::::5:a5a:5::::::a:: pos.-specific C aa838a33:5a8:55a:5:5::a:::::5: probability G :::3::::a5:::5:::::5:a::aaa::: matrix T :::53:83:::3a:::::::5::a::::5a bits 2.4 * * * * * * 2.2 * * * * * * 1.9 * * * * * * 1.7 ** * * * * ** * ******* * Relative 1.5 ** ** * * * ** * ******** * Entropy 1.2 ** ** * * * ** * ******** * (45.4 bits) 1.0 *** *** * *** ***** ********** 0.7 *** ************************** 0.5 ****************************** 0.2 ****************************** 0.0 ------------------------------ Multilevel CCCTCCTAGCCCTCACAAACAGCTGGGACT consensus ACT CC G T GC C GT T sequence G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCBCCTHGSCCTSMCAMASWGCTGGGAYT MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chr1:144551745-144552245 + 69 2.49e-16 CACCCGCGAG CCCTCCTAGCCCTGACACACAGCTGGGACT CT chr19:44259537-44260037 + 5 4.26e-15 ccac ccccccttggcctcccaaagtgctgggatt acaggcgtga chr5:181218311-181218811 - 63 1.46e-14 GTGATCCG CCAGCCTCGGCCTCCCAAAGTGCTGGGATT ACAGGCGTGA chr1:148334583-148335083 + 67 1.65e-14 CACCCCGGAG CCCTTCCAGCCTTGACACACAGCTGGGACT TTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCBCCTHGSCCTSMCAMASWGCTGGGAYT MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:144551745-144552245 2.5e-16 68_[+9]_2 chr19:44259537-44260037 4.3e-15 4_[+9]_66 chr5:181218311-181218811 1.5e-14 62_[-9]_8 chr1:148334583-148335083 1.7e-14 66_[+9]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCBCCTHGSCCTSMCAMASWGCTGGGAYT MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCBCCTHGSCCTSMCAMASWGCTGGGAYT width=30 seqs=4 chr1:144551745-144552245 ( 69) CCCTCCTAGCCCTGACACACAGCTGGGACT 1 chr19:44259537-44260037 ( 5) CCCCCCTTGGCCTCCCAAAGTGCTGGGATT 1 chr5:181218311-181218811 ( 63) CCAGCCTCGGCCTCCCAAAGTGCTGGGATT 1 chr1:148334583-148335083 ( 67) CCCTTCCAGCCTTGACACACAGCTGGGACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCBCCTHGSCCTSMCAMASWGCTGGGAYT MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42600 bayes= 12.5303 E= 3.3e+003 -865 167 -865 -865 -865 167 -865 -865 42 126 -865 -865 -865 -33 -33 142 -865 126 -865 42 -865 167 -865 -865 -865 -33 -865 201 142 -33 -865 42 -865 -865 167 -865 -865 67 67 -865 -865 167 -865 -865 -865 126 -865 42 -865 -865 -865 242 -865 67 67 -865 142 67 -865 -865 -865 167 -865 -865 242 -865 -865 -865 142 67 -865 -865 242 -865 -865 -865 -865 67 67 -865 142 -865 -865 142 -865 -865 167 -865 -865 167 -865 -865 -865 -865 -865 242 -865 -865 167 -865 -865 -865 167 -865 -865 -865 167 -865 242 -865 -865 -865 -865 67 -865 142 -865 -865 -865 242 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCBCCTHGSCCTSMCAMASWGCTGGGAYT MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 4 E= 3.3e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 0.250000 0.250000 0.500000 0.000000 0.750000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.500000 0.250000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.500000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCBCCTHGSCCTSMCAMASWGCTGGGAYT MEME-9 regular expression -------------------------------------------------------------------------------- CC[CA][TCG][CT]C[TC][ACT]G[CG]C[CT]T[CG][AC]CA[AC]A[CG][AT]GCTGGGA[CT]T -------------------------------------------------------------------------------- Time 4104.94 secs. ******************************************************************************** ******************************************************************************** MOTIF CTYCTCTKYWCT MEME-10 width = 12 sites = 26 llr = 290 E-value = 6.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTYCTCTKYWCT MEME-10 Description -------------------------------------------------------------------------------- Simplified A ::::1::::31: pos.-specific C 8:5938:16:7: probability G 1::1:2:3:::: matrix T 2a5:6:a6372a bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 * * * Relative 1.5 * * * * Entropy 1.2 * * * * * (16.1 bits) 1.0 ******* * * 0.7 ************ 0.5 ************ 0.2 ************ 0.0 ------------ Multilevel CTTCTCTTCTCT consensus C CG GTAT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYCTCTKYWCT MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr1:213987975-213988475 + 51 1.60e-07 ctctcccctg ctcctcttctct cgtctcccct chr12:53501143-53501643 - 69 4.69e-07 CGGAGCCTTG CTCCTCTTCACT CATTCCCTCC chr4:77075921-77076421 - 18 7.99e-07 TTCGGCCGCA CTTCTCTGTACT TTCGTTGGAC chr3:112086244-112086744 + 65 7.99e-07 CCGACAAGGT CTTCCCTTCTTT GGACGAGGAG chr1:37989836-37990336 - 69 1.11e-06 CCTTGTGGTG CTCCTGTTTTCT TAAGTCCCGG chr19:44259736-44260236 - 85 1.11e-06 GCGA CTTCCCTTCACT GAGAGCGAGG chr5:32174235-32174735 + 13 1.11e-06 GCCCTCGGTG CTTGTCTTTTCT TTGGCGTTCC chr1:206612153-206612653 - 14 1.70e-06 CATTCCCTGG CTTCTGTGCTCT CTTCCCCAGG chr15:40695058-40695558 - 51 1.70e-06 CTGGCTTACG CTCCACTTCTCT ACTCGCTTGC chr19:42075377-42075877 + 10 1.70e-06 GAACCTTGG TTTCCCTTTTCT CTCTCCATGT chr1:85708017-85708517 + 38 2.13e-06 CTCCCCCAGA CTTCCCTTCATT TTCAGCAGCA chr1:214439430-214439930 + 31 2.13e-06 ATGATTACGC CTCCTCTGCTTT TACAAAGTAC chr19:33176857-33177357 - 34 2.40e-06 AACCCAGGAT CTCCTGTTTACT AGACAGGCGC chr12:27710683-27711183 + 85 2.58e-06 GAGTGTCTGT CTCGTCTTCTCT GGGC chr17:40287816-40288316 - 79 3.67e-06 GCTCAGCTCT TTTCCCTTCACT TCACCTCAGG chr7:112790011-112790511 - 22 4.30e-06 AGGCTGAAGC CTTGTCTGCTCT CCTCCTTTTT chr6:27388706-27389206 + 32 5.27e-06 GACGCATGGG TTTCTCTTTAAT CCTTCCGACT chr1:27321970-27322470 + 47 5.27e-06 GCGGAAGGGA GTTCTCTGCTCT TGTTGCCGCC chr1:92831933-92832433 + 26 5.68e-06 ATGCATGGAG GTTCCCTTTTCT TGCCCGTATG chr1:156660143-156660643 - 10 6.42e-06 CTGGGTCACT CTCCAGTTCTCT GAGTGACCT chr18:35290153-35290653 - 62 6.42e-06 TCACCCGGAA CTCCTCTGCTAT CCGCGAGCCG chr6:30907818-30908318 + 36 7.79e-06 TAAAAGCCAG CTCCTCTCCTTT CGGCTTCCCC chr1:228647701-228648201 - 87 9.42e-06 GT CTCCTCTGATCT CGTGAAGATA chr1:205211490-205211990 + 35 1.11e-05 TATCGGAACC TTTCTCTCCACT ATCCAGAAGC chr19:39341577-39342077 + 8 1.32e-05 GCAACAA CTCCCGTTTATT GACAGCCTCC chr11:73787675-73788175 + 12 1.45e-05 AAGGCCGTTC CTTCAGTGTTTT CAGACGCCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYCTCTKYWCT MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:213987975-213988475 1.6e-07 50_[+10]_38 chr12:53501143-53501643 4.7e-07 68_[-10]_20 chr4:77075921-77076421 8e-07 17_[-10]_71 chr3:112086244-112086744 8e-07 64_[+10]_24 chr1:37989836-37990336 1.1e-06 68_[-10]_20 chr19:44259736-44260236 1.1e-06 84_[-10]_4 chr5:32174235-32174735 1.1e-06 12_[+10]_76 chr1:206612153-206612653 1.7e-06 13_[-10]_75 chr15:40695058-40695558 1.7e-06 50_[-10]_38 chr19:42075377-42075877 1.7e-06 9_[+10]_79 chr1:85708017-85708517 2.1e-06 37_[+10]_51 chr1:214439430-214439930 2.1e-06 30_[+10]_58 chr19:33176857-33177357 2.4e-06 33_[-10]_55 chr12:27710683-27711183 2.6e-06 84_[+10]_4 chr17:40287816-40288316 3.7e-06 78_[-10]_10 chr7:112790011-112790511 4.3e-06 21_[-10]_67 chr6:27388706-27389206 5.3e-06 31_[+10]_57 chr1:27321970-27322470 5.3e-06 46_[+10]_42 chr1:92831933-92832433 5.7e-06 25_[+10]_63 chr1:156660143-156660643 6.4e-06 9_[-10]_79 chr18:35290153-35290653 6.4e-06 61_[-10]_27 chr6:30907818-30908318 7.8e-06 35_[+10]_53 chr1:228647701-228648201 9.4e-06 86_[-10]_2 chr1:205211490-205211990 1.1e-05 34_[+10]_54 chr19:39341577-39342077 1.3e-05 7_[+10]_81 chr11:73787675-73788175 1.4e-05 11_[+10]_77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYCTCTKYWCT MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTYCTCTKYWCT width=12 seqs=26 chr1:213987975-213988475 ( 51) CTCCTCTTCTCT 1 chr12:53501143-53501643 ( 69) CTCCTCTTCACT 1 chr4:77075921-77076421 ( 18) CTTCTCTGTACT 1 chr3:112086244-112086744 ( 65) CTTCCCTTCTTT 1 chr1:37989836-37990336 ( 69) CTCCTGTTTTCT 1 chr19:44259736-44260236 ( 85) CTTCCCTTCACT 1 chr5:32174235-32174735 ( 13) CTTGTCTTTTCT 1 chr1:206612153-206612653 ( 14) CTTCTGTGCTCT 1 chr15:40695058-40695558 ( 51) CTCCACTTCTCT 1 chr19:42075377-42075877 ( 10) TTTCCCTTTTCT 1 chr1:85708017-85708517 ( 38) CTTCCCTTCATT 1 chr1:214439430-214439930 ( 31) CTCCTCTGCTTT 1 chr19:33176857-33177357 ( 34) CTCCTGTTTACT 1 chr12:27710683-27711183 ( 85) CTCGTCTTCTCT 1 chr17:40287816-40288316 ( 79) TTTCCCTTCACT 1 chr7:112790011-112790511 ( 22) CTTGTCTGCTCT 1 chr6:27388706-27389206 ( 32) TTTCTCTTTAAT 1 chr1:27321970-27322470 ( 47) GTTCTCTGCTCT 1 chr1:92831933-92832433 ( 26) GTTCCCTTTTCT 1 chr1:156660143-156660643 ( 10) CTCCAGTTCTCT 1 chr18:35290153-35290653 ( 62) CTCCTCTGCTAT 1 chr6:30907818-30908318 ( 36) CTCCTCTCCTTT 1 chr1:228647701-228648201 ( 87) CTCCTCTGATCT 1 chr1:205211490-205211990 ( 35) TTTCTCTCCACT 1 chr19:39341577-39342077 ( 8) CTCCCGTTTATT 1 chr11:73787675-73788175 ( 12) CTTCAGTGTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYCTCTKYWCT MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53400 bayes= 11.5341 E= 6.7e+003 -1134 129 -203 -28 -1134 -1134 -1134 242 -1134 56 -1134 153 -1134 150 -144 -1134 -69 -22 -1134 172 -1134 129 -44 -1134 -1134 -1134 -1134 242 -1134 -203 -3 172 -228 97 -1134 89 89 -1134 -1134 181 -128 114 -1134 31 -1134 -1134 -1134 242 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYCTCTKYWCT MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 26 E= 6.7e+003 0.000000 0.769231 0.076923 0.153846 0.000000 0.000000 0.000000 1.000000 0.000000 0.461538 0.000000 0.538462 0.000000 0.884615 0.115385 0.000000 0.115385 0.269231 0.000000 0.615385 0.000000 0.769231 0.230769 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.076923 0.307692 0.615385 0.038462 0.615385 0.000000 0.346154 0.346154 0.000000 0.000000 0.653846 0.076923 0.692308 0.000000 0.230769 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYCTCTKYWCT MEME-10 regular expression -------------------------------------------------------------------------------- CT[TC]C[TC][CG]T[TG][CT][TA][CT]T -------------------------------------------------------------------------------- Time 4528.02 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:75903745-75904245 9.01e-01 100 chr17:75784961-75785461 8.30e-01 100 chr1:228082159-228082659 3.09e-01 100 chrX:54044002-54044502 2.50e-01 100 chr7:100126994-100127494 8.40e-02 100 chr7:151085853-151086353 4.21e-01 100 chr13:41061366-41061866 9.60e-01 100 chr18:36067178-36067678 2.25e-01 100 chr14:90396803-90397303 3.88e-01 73_[+2(6.30e-06)]_5 chr7:99465811-99466311 1.23e-02 16_[-2(7.19e-06)]_62 chr15:84570876-84571376 1.36e-01 100 chr8:89984183-89984683 3.69e-02 11_[-2(2.02e-06)]_67 chr10:94362771-94363271 5.01e-01 100 chr13:110713116-11071361 3.62e-01 100 chr1:173714790-173715290 1.03e-07 16_[+7(1.02e-07)]_[+2(3.15e-07)]_8_\ [+7(4.09e-05)]_10 chr1:85297854-85298354 1.69e-04 26_[-1(3.41e-05)]_1_[+6(7.26e-05)]_\ [-5(4.54e-06)]_8 chr1:212035154-212035654 4.05e-01 100 chr5:163459718-163460218 3.90e-01 100 chr12:76348044-76348544 6.11e-01 100 chr5:74766956-74767456 2.07e-01 100 chr6:7389385-7389885 3.07e-04 17_[+7(2.78e-06)]_61 chr14:20469336-20469836 9.13e-01 100 chr19:42075377-42075877 1.50e-03 9_[+10(1.70e-06)]_79 chr1:84620668-84621168 4.95e-01 100 chrX:47658832-47659332 8.58e-01 100 chr6:87155264-87155764 7.89e-01 100 chr1:214439430-214439930 9.22e-04 30_[+10(2.13e-06)]_58 chr12:55973997-55974497 3.46e-03 72_[+8(4.94e-07)]_6 chr17:7583707-7584207 1.97e-01 100 chr15:72783552-72784052 4.44e-01 100 chr1:109484194-109484694 2.56e-02 51_[-2(5.51e-06)]_27 chr10:119892292-11989279 1.72e-01 47_[-2(8.31e-05)]_31 chr1:23867898-23868398 9.14e-01 100 chr5:73216004-73216504 3.75e-04 17_[+7(1.77e-06)]_61 chr10:17201373-17201873 4.82e-03 24_[-8(1.32e-06)]_18_[-2(4.81e-06)]_\ 14 chr10:97318821-97319321 8.33e-01 100 chrX:53422119-53422619 6.16e-01 100 chr19:37217816-37218316 8.10e-02 100 chr7:100428631-100429131 4.39e-01 100 chr18:48952448-48952948 3.67e-01 56_[+2(2.15e-05)]_22 chr19:44212484-44212984 5.14e-03 13_[+7(2.97e-05)]_65 chr12:30754964-30755464 9.50e-01 100 chr2:165953820-165954320 4.52e-05 29_[+3(1.68e-06)]_55 chr9:111630908-111631408 9.62e-01 100 chr15:66886266-66886766 3.49e-02 4_[-3(3.68e-05)]_80 chr18:35497695-35498195 3.10e-01 100 chr6:11093645-11094145 7.33e-01 100 chr4:139295407-139295907 3.33e-01 34_[-2(1.71e-05)]_44 chr1:16545742-16546242 9.51e-01 100 chr19:38831525-38832025 6.13e-02 36_[-2(1.73e-06)]_42 chr10:73413703-73414203 1.49e-02 67_[+7(2.57e-07)]_11 chr5:140718597-140719097 5.07e-02 100 chr2:55268991-55269491 3.37e-01 100 chr19:34926850-34927350 9.95e-01 100 chr5:112160543-112161043 1.60e-01 53_[+9(3.27e-05)]_17 chr2:201071638-201072138 1.41e-02 31_[+3(5.71e-05)]_53 chr1:12478072-12478572 5.71e-04 63_[+3(5.33e-07)]_21 chr7:100837126-100837626 1.91e-06 1_[-3(4.85e-07)]_52_[+2(4.14e-05)]_\ 9 chr12:31749140-31749640 1.54e-01 100 chr10:103917720-10391822 5.30e-01 100 chr17:63621499-63621999 1.13e-04 [+2(3.15e-07)]_51_[+8(2.49e-08)]_5 chr7:105532069-105532569 7.60e-01 100 chr1:226061590-226062090 7.92e-01 100 chr11:47248604-47249104 4.60e-01 100 chr11:83285990-83286490 4.29e-01 100 chr14:28768005-28768505 3.05e-01 100 chr19:35612570-35613070 5.40e-01 100 chr6:30647266-30647766 4.61e-02 46_[-9(3.46e-05)]_24 chr12:6470328-6470828 3.09e-05 1_[+6(9.57e-08)]_42_[+2(3.01e-05)]_\ 13 chr1:88891292-88891792 4.55e-06 41_[-5(8.49e-06)]_7_[+7(2.84e-08)]_\ 18 chr19:34677039-34677539 9.73e-02 100 chr6:138988034-138988534 1.40e-04 55_[+7(3.25e-08)]_23 chr12:118135933-11813643 4.12e-02 42_[+9(2.27e-06)]_28 chr1:201435681-201436181 6.77e-23 4_[+5(3.87e-07)]_2_[+5(9.05e-06)]_4_\ [-1(1.96e-17)]_3_[+7(3.16e-11)]_10 chr1:28581564-28582064 1.94e-01 43_[+2(3.73e-05)]_35 chr1:110407425-110407925 7.87e-01 100 chr1:1406985-1407485 4.36e-01 65_[-5(5.05e-05)]_23 chr15:68559659-68560159 2.58e-01 100 chr12:48105860-48106360 4.14e-01 100 chr15:74223468-74223968 5.50e-14 55_[+1(1.96e-17)]_2_[-5(1.54e-07)] chr17:36545475-36545975 1.88e-03 8_[+2(1.52e-05)]_40_[+7(6.98e-06)]_\ 8 chr6:132813981-132814481 1.11e-02 3_[+3(7.51e-06)]_81 chr14:55051607-55052107 4.77e-01 100 chr12:69359693-69360193 9.43e-02 100 chr9:121074773-121075273 4.79e-01 100 chr1:99849946-99850446 3.40e-01 75_[-2(6.86e-05)]_3 chr10:68406597-68407097 9.10e-04 68_[+9(9.72e-06)]_2 chr5:181218311-181218811 2.20e-09 62_[-9(1.46e-14)]_8 chr11:112961122-11296162 9.02e-02 4_[-2(3.01e-05)]_74 chr1:26432180-26432680 1.78e-02 100 chr16:2267722-2268222 8.44e-01 100 chr12:38906470-38906970 3.13e-01 100 chr1:161530881-161531381 7.51e-02 [+3(5.86e-07)]_84 chr19:33521491-33521991 2.67e-02 24_[+7(4.64e-05)]_12_[-2(2.41e-05)]_\ 20 chr19:47483926-47484426 1.46e-01 5_[-2(1.71e-05)]_28_[-2(2.15e-05)]_\ 23 chr15:101945846-10194634 1.59e-20 13_[-3(5.71e-06)]_[-1(1.39e-16)]_\ [-3(1.25e-08)]_24 chr19:1021389-1021889 8.41e-07 71_[-8(1.28e-09)]_7 chr1:16644712-16645212 5.79e-01 100 chr18:33578964-33579464 7.92e-03 40_[+5(1.63e-06)]_6_[+10(7.40e-05)]_\ 30 chr6:27146996-27147496 9.74e-01 100 chr6:143511296-143511796 1.72e-01 63_[+2(2.02e-06)]_15 chr5:121961486-121961986 3.64e-16 12_[+1(1.96e-17)]_[-5(3.97e-08)]_45 chr5:43105601-43106101 8.03e-02 100 chr1:108746545-108747045 1.67e-02 35_[+7(1.47e-06)]_43 chr6:78867461-78867961 2.98e-01 100 chr1:233112915-233113415 1.29e-03 58_[-3(3.18e-06)]_26 chr19:40750089-40750589 1.21e-01 100 chr18:58781638-58782138 3.73e-06 14_[+5(1.29e-06)]_36_[+5(6.32e-08)]_\ 26 chr5:137754408-137754908 7.28e-03 71_[+10(2.58e-06)]_17 chr19:46850326-46850826 6.31e-01 100 chr19:33176857-33177357 3.93e-03 33_[-10(2.40e-06)]_55 chr1:236281656-236282156 9.21e-01 100 chr19:35510041-35510541 5.47e-06 [+8(6.88e-11)]_16_[-4(4.94e-05)]_31 chr19:29715284-29715784 3.75e-01 100 chr1:144551745-144552245 5.54e-09 8_[-2(6.86e-05)]_38_[+9(2.49e-16)]_\ 2 chr2:177263405-177263905 9.66e-01 100 chr18:70205523-70206023 8.00e-01 100 chr6:116571050-116571550 2.01e-01 100 chr17:32350058-32350558 4.72e-02 100 chr17:7484173-7484673 1.58e-03 12_[+2(3.73e-05)]_11_[+7(1.77e-06)]_\ 33 chr19:38264455-38264955 9.56e-02 1_[+7(2.33e-06)]_77 chr1:231422396-231422896 4.44e-01 100 chr1:182391308-182391808 2.31e-02 71_[+7(4.36e-05)]_7 chr5:32174235-32174735 5.31e-06 12_[+10(1.11e-06)]_76 chr19:36666633-36667133 1.40e-01 100 chr2:69914131-69914631 9.98e-01 100 chr16:30698010-30698510 3.94e-01 100 chr7:100335933-100336433 8.85e-01 100 chr5:10307383-10307883 4.51e-02 100 chr10:46030215-46030715 8.15e-01 100 chr7:158829617-158830117 8.22e-01 100 chr13:110965257-11096575 3.75e-02 76_[+10(7.81e-05)]_12 chr1:148264860-148265360 5.81e-02 100 chr18:59358757-59359257 6.06e-02 21_[+7(1.29e-05)]_57 chr3:15601823-15602323 4.35e-05 17_[+5(8.07e-06)]_16_\ [+10(4.38e-05)]_43 chr6:28080740-28081240 7.46e-04 57_[-2(1.19e-05)]_21 chr4:184734007-184734507 2.39e-02 53_[-4(7.83e-07)]_16 chr1:226308675-226309175 2.81e-09 27_[+1(2.49e-09)]_12_[+2(3.35e-05)]_\ 8 chr5:131634864-131635364 4.44e-01 100 chr10:75111586-75112086 3.04e-01 100 chr17:58006918-58007418 4.03e-01 100 chr1:54715609-54716109 3.54e-01 100 chr3:9986634-9987134 3.50e-01 69_[+7(8.33e-05)]_9 chr1:26620817-26621317 6.37e-06 2_[+7(4.81e-08)]_76 chr7:133081693-133082193 7.22e-01 100 chr22:39529150-39529650 8.28e-01 100 chr14:54396931-54397431 9.68e-01 100 chr1:93179974-93180474 4.58e-01 12_[+7(9.31e-05)]_66 chr5:79514306-79514806 2.52e-01 12_[-2(8.31e-05)]_66 chr7:55365910-55366410 8.32e-02 100 chr17:59209750-59210250 1.67e-02 100 chr5:41870068-41870568 4.54e-01 100 chrX:101348634-101349134 7.55e-02 24_[-8(6.03e-08)]_54 chr1:109090487-109090987 4.59e-01 100 chr1:151281355-151281855 7.64e-02 27_[+9(2.60e-05)]_43 chr11:116772695-11677319 9.91e-04 69_[+7(1.20e-05)]_9 chr19:36214222-36214722 1.89e-07 [-6(2.57e-08)]_43_[+1(8.98e-08)]_4 chr19:44164542-44165042 8.51e-03 33_[+3(2.95e-06)]_51 chr1:184386540-184387040 1.14e-15 29_[-5(3.97e-08)]_9_[+1(5.29e-15)]_\ 19 chr5:163505506-163506006 4.88e-02 73_[+7(9.31e-05)]_5 chr16:22297193-22297693 2.89e-02 73_[-2(1.43e-07)]_5 chr19:36139539-36140039 7.18e-01 100 chr4:77862561-77863061 9.04e-03 27_[-3(2.83e-05)]_57 chr4:151099422-151099922 9.53e-02 100 chr5:59303187-59303687 1.41e-07 18_[-3(1.31e-06)]_[-1(1.05e-06)]_35 chr1:63367534-63368034 6.00e-01 100 chr2:191020112-191020612 6.83e-01 100 chr5:134648342-134648842 6.23e-01 100 chr5:71455477-71455977 1.50e-03 32_[+2(4.55e-07)]_46 chr18:35041309-35041809 5.61e-03 59_[+3(2.54e-05)]_25 chr12:113185234-11318573 8.95e-03 26_[+2(4.81e-06)]_14_[-9(7.33e-05)]_\ 8 chr1:15526614-15527114 2.82e-03 31_[-2(4.81e-06)]_47 chr6:24402835-24403335 2.65e-01 100 chr22:20981886-20982386 6.54e-01 100 chr12:28190332-28190832 4.81e-03 68_[+2(3.64e-06)]_10 chr7:5513664-5514164 1.28e-01 100 chr18:49487115-49487615 7.66e-01 100 chr1:85048428-85048928 4.57e-02 62_[-7(8.33e-05)]_16 chr12:123458057-12345855 1.36e-02 5_[+7(3.98e-07)]_73 chr18:32091745-32092245 8.28e-01 100 chr3:11846575-11847075 2.51e-01 5_[-5(1.14e-05)]_83 chr17:76671171-76671671 1.03e-09 17_[-1(7.14e-12)]_52 chr10:32958316-32958816 1.49e-01 45_[-2(4.60e-05)]_33 chr10:97334569-97335069 7.63e-01 100 chr7:139359327-139359827 5.68e-01 64_[+4(8.57e-05)]_5 chr6:26026926-26027426 7.59e-01 100 chr1:44986226-44986726 1.35e-01 52_[-7(9.31e-05)]_3_[+5(4.16e-05)]_\ 11 chr1:156456773-156457273 2.17e-02 100 chr17:67993893-67994393 1.40e-05 9_[+7(5.05e-06)]_27_[+8(6.03e-08)]_\ 20 chr12:53006498-53006998 1.55e-02 100 chr1:229626232-229626732 8.86e-01 100 chr12:38316514-38317014 2.75e-01 100 chr12:2004250-2004750 8.17e-01 100 chr13:48037601-48038101 8.52e-01 100 chr19:50476386-50476886 2.37e-01 100 chr1:26169677-26170177 4.06e-01 100 chr1:31944434-31944934 3.52e-03 28_[+7(1.47e-06)]_50 chr17:40287816-40288316 9.29e-03 78_[-10(3.67e-06)]_10 chr6:28866475-28866975 9.25e-01 100 chr17:7836757-7837257 1.75e-03 10_[-7(3.93e-06)]_68 chrX:53225009-53225509 3.35e-01 100 chr13:51584475-51584975 4.65e-01 100 chr19:39411958-39412458 3.66e-01 100 chr9:132944458-132944958 2.58e-01 100 chr5:150449718-150450218 9.33e-01 100 chr9:128771796-128772296 8.62e-03 1_[+2(2.15e-05)]_20_[-8(5.49e-08)]_\ 35 chr1:155017241-155017741 1.56e-04 6_[-2(1.05e-05)]_37_[-7(1.29e-07)]_\ 13 chr18:21612130-21612630 4.65e-02 100 chr1:65420609-65421109 7.33e-02 37_[-7(8.17e-06)]_41 chr17:18781041-18781541 8.70e-01 100 chr1:224356754-224357254 1.11e-01 68_[+2(1.19e-05)]_10 chr1:9943105-9943605 1.00e+00 100 chr1:229625143-229625643 3.48e-01 100 chr10:14878230-14878730 7.69e-01 12_[+2(8.31e-05)]_66 chr19:40831800-40832300 1.07e-02 75_[+3(5.71e-05)]_9 chr11:57741144-57741644 4.77e-01 100 chr6:35468216-35468716 6.26e-01 100 chr6:36874559-36875059 5.38e-01 100 chr1:148334583-148335083 6.93e-08 66_[+9(1.65e-14)]_4 chr9:97922036-97922536 2.77e-01 100 chr16:58392272-58392772 2.55e-03 33_[-2(2.02e-06)]_45 chr1:230642209-230642709 9.82e-01 100 chr1:235866985-235867485 9.90e-01 100 chr13:75480661-75481161 3.46e-10 13_[+1(5.29e-15)]_56 chr7:133492167-133492667 4.13e-09 5_[+6(4.90e-08)]_35_[-3(5.33e-07)]_\ 22 chr1:228109003-228109503 1.36e-01 100 chr3:112086244-112086744 3.51e-02 64_[+10(7.99e-07)]_24 chr1:231528505-231529005 3.85e-01 100 chr19:40715357-40715857 1.32e-04 40_[-7(3.58e-07)]_38 chr19:17336999-17337499 3.01e-01 100 chr5:140691001-140691501 5.24e-01 100 chr17:73310554-73311054 2.77e-17 [+1(1.96e-17)]_[-5(1.54e-07)]_\ [+10(2.35e-05)]_17_[-2(6.30e-06)]_6 chr12:990678-991178 2.36e-12 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chr10:93702404-93702904 1.20e-01 71_[+7(5.48e-06)]_7 chr14:104816009-10481650 9.43e-01 100 chr1:193121811-193122311 7.14e-02 77_[+2(3.35e-05)]_1 chr4:177442037-177442537 3.53e-01 100 chr6:99568413-99568913 9.61e-02 34_[+2(3.35e-05)]_44 chr5:111092074-111092574 4.12e-01 100 chr17:30906046-30906546 8.95e-01 100 chr6:79078192-79078692 3.73e-05 61_[-3(1.25e-08)]_23 chr12:95217702-95218202 8.30e-02 100 chr5:139341688-139342188 8.70e-02 100 chr5:90558384-90558884 9.77e-01 100 chr19:32405198-32405698 8.13e-01 100 chr19:36053951-36054451 7.03e-01 100 chr19:35643377-35643877 3.22e-01 100 chr15:72473855-72474355 1.52e-01 100 chr10:73246882-73247382 9.22e-01 100 chr15:70097553-70098053 2.18e-10 14_[-5(7.68e-07)]_2_[+1(8.22e-11)]_\ 41 chrX:72276889-72277389 1.38e-02 47_[+2(4.14e-05)]_31 chr1:229508038-229508538 8.46e-01 100 chr5:10353237-10353737 8.36e-01 100 chr3:4986835-4987335 5.58e-01 100 chr19:41310077-41310577 4.68e-02 46_[+2(1.05e-05)]_32 chr1:206612153-206612653 1.87e-03 13_[-10(1.70e-06)]_75 chr7:102572279-102572779 1.26e-01 42_[-2(9.30e-06)]_14_[-2(9.13e-05)] chr16:30874966-30875466 8.10e-01 100 chr9:37800484-37800984 7.33e-01 100 chr19:44259736-44260236 6.12e-02 84_[-10(1.11e-06)]_4 chr1:224113949-224114449 3.43e-02 18_[+2(9.30e-06)]_[-2(7.56e-05)]_38 chr15:89893890-89894390 2.27e-01 100 chr7:112790011-112790511 3.12e-04 21_[-10(4.30e-06)]_11_\ [+2(1.05e-05)]_34 chr1:244451460-244451960 4.85e-01 100 chr15:72375756-72376256 9.86e-01 100 chr12:106357565-10635806 5.42e-02 58_[+2(9.13e-05)]_20 chr10:47553213-47553713 8.96e-01 100 chr5:103119885-103120385 4.56e-01 100 chr4:77075921-77076421 3.21e-02 17_[-10(7.99e-07)]_71 chr12:49060539-49061039 4.47e-05 1_[+7(1.47e-06)]_77 chr13:52194185-52194685 8.73e-02 45_[-5(3.48e-05)]_43 chr15:65610910-65611410 2.74e-01 100 chr19:36916272-36916772 1.52e-01 100 chr5:14664175-14664675 3.20e-01 100 chr1:93078933-93079433 1.20e-01 51_[-2(8.18e-06)]_27 chr7:100673354-100673854 3.12e-01 100 chr3:53347416-53347916 9.88e-01 100 chr1:1375043-1375543 3.81e-01 19_[-2(3.73e-05)]_59 chr1:235128524-235129024 3.82e-01 21_[+2(2.70e-05)]_57 chrUn_KI270467v1:2156-26 2.24e-18 7_[-3(5.81e-08)]_4_[+4(7.84e-15)]_2_\ [+4(6.98e-17)]_9 chr9:133417906-133418406 8.61e-01 100 chr5:160008634-160009134 1.45e-22 17_[+1(1.39e-16)]_1_[+1(2.03e-09)]_\ 20 chr19:34134450-34134950 1.50e-02 30_[-7(4.93e-05)]_48 chr1:223846118-223846618 1.01e-01 63_[+7(1.11e-05)]_15 chr12:123601746-12360224 5.28e-01 100 chr17:40140223-40140723 8.16e-01 100 chr19:35154681-35155181 9.79e-03 43_[-2(5.63e-05)]_10_[-2(7.56e-05)]_\ 3 chr17:51153345-51153845 9.71e-01 100 chr10:72354688-72355188 7.27e-02 100 chr5:176388742-176389242 2.42e-01 100 chr13:30617592-30618092 3.03e-02 32_[-7(8.17e-06)]_46 chr12:82358327-82358827 3.04e-01 100 chr19:36837952-36838452 5.87e-02 100 chr1:92831933-92832433 7.38e-02 25_[+10(5.68e-06)]_63 chr9:133030731-133031231 3.56e-02 12_[-10(9.24e-05)]_48_\ [+2(2.35e-06)]_6 chr1:37989836-37990336 1.06e-02 68_[-10(1.11e-06)]_20 chr19:36572875-36573375 2.64e-06 21_[-5(3.97e-08)]_67 chr19:38374624-38375124 9.85e-01 100 chr6:42890427-42890927 8.73e-01 100 chr19:35881955-35882455 8.73e-20 1_[+3(7.72e-07)]_[+1(1.39e-16)]_1_\ [+3(6.12e-06)]_35 chr5:40834977-40835477 3.84e-02 1_[-7(4.09e-05)]_1_[+7(2.55e-06)]_\ 54 chr1:40257838-40258338 4.14e-03 61_[+5(2.41e-06)]_27 chr1:16644507-16645007 3.99e-01 100 chr6:131628015-131628515 5.61e-01 100 chrX:73943998-73944498 5.48e-01 100 chr1:244970685-244971185 9.62e-02 [-2(1.92e-05)]_78 chr15:65517339-65517839 5.36e-01 12_[-2(3.73e-05)]_66 chr19:1383532-1384032 2.41e-01 55_[+2(9.13e-05)]_23 chr1:183471792-183472292 3.03e-04 52_[+3(3.50e-05)]_32 chr1:226939558-226940058 3.12e-02 100 chr19:44259537-44260037 1.27e-08 4_[+9(4.26e-15)]_66 chr12:57112008-57112508 1.59e-15 14_[+1(1.96e-17)]_[-5(7.03e-06)]_43 chrUn_KI270466v1:125-625 2.63e-21 23_[+4(7.42e-17)]_11_[+4(1.97e-19)]_\ 4 chr12:12266900-12267400 2.16e-02 100 chr1:163321634-163322134 7.69e-01 100 chr1:63523061-63523561 3.65e-01 100 chrUn_KI270467v1:3129-36 2.56e-20 6_[+4(2.44e-20)]_11_[+4(6.41e-20)]_\ 21 chrUn_KI270467v1:1948-24 1.78e-20 19_[+4(4.85e-14)]_11_[+4(2.29e-18)]_\ 8 chrUn_KI270467v1:2926-34 3.14e-24 [+4(1.32e-20)]_11_[+4(1.42e-16)]_\ [-3(6.59e-11)]_11 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: kali ********************************************************************************