******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF501.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr11:46700640-46701140 1.0000 100 chr12:109998958-10999945 1.0000 100 chr18:48873509-48874009 1.0000 100 chr1:228458265-228458765 1.0000 100 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chr15:74889929-74890429 1.0000 100 chr6:24774932-24775432 1.0000 100 chr6:26285201-26285701 1.0000 100 chr13:113208495-11320899 1.0000 100 chr17:61927543-61928043 1.0000 100 chr12:53501143-53501643 1.0000 100 chr5:98929178-98929678 1.0000 100 chr15:74546128-74546628 1.0000 100 chr12:109477297-10947779 1.0000 100 chr19:39341577-39342077 1.0000 100 chr1:225923848-225924348 1.0000 100 chr1:153634027-153634527 1.0000 100 chr10:93702404-93702904 1.0000 100 chr14:104816009-10481650 1.0000 100 chr1:193121811-193122311 1.0000 100 chr4:177442037-177442537 1.0000 100 chr6:99568413-99568913 1.0000 100 chr5:111092074-111092574 1.0000 100 chr17:30906046-30906546 1.0000 100 chr6:79078192-79078692 1.0000 100 chr12:95217702-95218202 1.0000 100 chr5:139341688-139342188 1.0000 100 chr5:90558384-90558884 1.0000 100 chr19:32405198-32405698 1.0000 100 chr19:36053951-36054451 1.0000 100 chr19:35643377-35643877 1.0000 100 chr15:72473855-72474355 1.0000 100 chr10:73246882-73247382 1.0000 100 chr15:70097553-70098053 1.0000 100 chrX:72276889-72277389 1.0000 100 chr1:229508038-229508538 1.0000 100 chr5:10353237-10353737 1.0000 100 chr3:4986835-4987335 1.0000 100 chr19:41310077-41310577 1.0000 100 chr1:206612153-206612653 1.0000 100 chr7:102572279-102572779 1.0000 100 chr16:30874966-30875466 1.0000 100 chr9:37800484-37800984 1.0000 100 chr19:44259736-44260236 1.0000 100 chr1:224113949-224114449 1.0000 100 chr15:89893890-89894390 1.0000 100 chr7:112790011-112790511 1.0000 100 chr1:244451460-244451960 1.0000 100 chr15:72375756-72376256 1.0000 100 chr12:106357565-10635806 1.0000 100 chr10:47553213-47553713 1.0000 100 chr5:103119885-103120385 1.0000 100 chr4:77075921-77076421 1.0000 100 chr12:49060539-49061039 1.0000 100 chr13:52194185-52194685 1.0000 100 chr15:65610910-65611410 1.0000 100 chr19:36916272-36916772 1.0000 100 chr5:14664175-14664675 1.0000 100 chr1:93078933-93079433 1.0000 100 chr7:100673354-100673854 1.0000 100 chr3:53347416-53347916 1.0000 100 chr1:1375043-1375543 1.0000 100 chr1:235128524-235129024 1.0000 100 chr5:160008634-160009134 1.0000 100 chr19:34134450-34134950 1.0000 100 chr1:223846118-223846618 1.0000 100 chr12:123601746-12360224 1.0000 100 chr17:40140223-40140723 1.0000 100 chr19:35154681-35155181 1.0000 100 chr17:51153345-51153845 1.0000 100 chr10:72354688-72355188 1.0000 100 chr5:176388742-176389242 1.0000 100 chr13:30617592-30618092 1.0000 100 chr12:82358327-82358827 1.0000 100 chr19:36837952-36838452 1.0000 100 chr1:92831933-92832433 1.0000 100 chr9:133030731-133031231 1.0000 100 chr1:37989836-37990336 1.0000 100 chr19:36572875-36573375 1.0000 100 chr19:38374624-38375124 1.0000 100 chr6:42890427-42890927 1.0000 100 chr19:35881955-35882455 1.0000 100 chr5:40834977-40835477 1.0000 100 chr1:40257838-40258338 1.0000 100 chr1:16644507-16645007 1.0000 100 chr6:131628015-131628515 1.0000 100 chrX:73943998-73944498 1.0000 100 chr1:244970685-244971185 1.0000 100 chr15:65517339-65517839 1.0000 100 chr19:1383532-1384032 1.0000 100 chr1:183471792-183472292 1.0000 100 chr1:226939558-226940058 1.0000 100 chr19:44259537-44260037 1.0000 100 chr12:57112008-57112508 1.0000 100 chr1:163321634-163322134 1.0000 100 chr1:63523061-63523561 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF501.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF501.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF501.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.181 C 0.319 G 0.319 T 0.181 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF501.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/background): A 0.184 C 0.316 G 0.316 T 0.184 ******************************************************************************** ******************************************************************************** MOTIF CACACACRCACACACACACACACACACACACACACACACACACAMACA MEME-1 width = 48 sites = 28 llr = 1043 E-value = 6.6e-240 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACACRCACACACACACACACACACACACACACACACACACAMACA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2717262628:928:838:829:839:93a:929191a:837284826 pos.-specific C 6171626:8:8:8:81716:81718:7:7:8:8:8:8:817161626: probability G :3::12:311:1:1:1:111::11:1:::::::::1:::1:21:::11 matrix T 1:212:2::12:::2:::3:::21::3:::2:::1:::2:::11::12 bits 2.4 2.2 * * 2.0 * * * * * * * * 1.7 * * * * * * * * * Relative 1.5 * * * * * * * * * * * * * Entropy 1.2 * * * * * * * * * * *** * * * * * * (53.8 bits) 1.0 * * * * ********* *** ***** ***** * *** * * * * 0.7 **** ************* *** ******************* *** * 0.5 **** ************************************* *** * 0.2 ************************************************ 0.0 ------------------------------------------------ Multilevel CACACACACACACACACACACACACACACACACACACACACACACACA consensus AG AG T T A T A A T A A T A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACRCACACACACACACACACACACACACACACACACACAMACA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------------ chr6:111568239-111568739 - 3 4.28e-30 CGTGCACGTA CACACACACACACACACACACACACACACACACACACACACACACACA CA chr2:169364415-169364915 - 4 4.28e-30 AGTGAAAGGG CACACACACACACACACACACACACACACACACACACACACACACACA CAC chr5:121961486-121961986 + 14 4.28e-30 ACCAAGGGAa cacacacacacacacacacacacacacacacacacacacacacacaca AACCGAATCT chr6:134052040-134052540 + 6 3.51e-27 GCGCG CGCATacacacacacacacacacacacacacacacacacacacacaca cacGGGACTC chr15:74223468-74223968 + 51 7.24e-25 GCCCACCGCC AGCATacacacacacacacacacacacacacacacacacacacacacg ca chr19:35947356-35947856 - 35 2.65e-24 GAGACTTCGA CACACACACACACACACACACACACACACACACACACACACGAACAGT GCCCTCTGGC chr12:57112008-57112508 + 6 9.10e-24 GCAAT cacaacaccacacacacacacacacacacacacacacacacacacaca caGTCTTGCT chr1:184386540-184387040 + 28 9.77e-22 CGCACACACG Tacacacacacacacacctgcccacacacacacacacacacacacaca cacacTGCCG chr1:201435681-201436181 - 21 2.07e-21 TCTCTCTTCA CACACACACACACACACACACACACACACACACAGGCACGCGCACACA CATGCACACA chr1:21345628-21346128 - 53 9.87e-21 . CGCGCGCGCACACACACACACACACACACACACACACACACACAAGCA GCTGCAGCGC chr17:73310554-73311054 + 2 9.87e-21 a cacacacacacacacacacacacacacacacacacacacGCACTTCAG TCCTCTCCCA chr1:150235816-150236316 + 9 4.87e-20 cgcgcaca cacacgcacgcacgcgcgcacacacatacacacacacatacacacaca cacCCGCAGT chr13:75480661-75481161 + 5 1.89e-18 CGCG CGcacacgcacgcacacacacacacacacacacacacacacGGCAAGC AAGCCATCTC chr5:160008634-160009134 + 19 3.08e-18 ctgtctcaaa aataaataaataaataaataaataaataaataaataaataaataaata aataGTGAAA chr1:6404487-6404987 + 22 3.08e-18 ctccgtctca aataaataaataaataaataaataaataaataaataaataaataaata aaAGTGACAT chr19:53979840-53980340 - 17 8.00e-18 CGCGCACTTG CACTCACGCGCGCGCGCGCACACACACACACACACACACACACACACG TGCGCGCCCA chr15:70097553-70098053 + 24 2.21e-17 acacacacac ccaacacacacacacgcgcgcacgcacacacacacacacCAAAAAAAA AAGTGCCCCG chr12:990678-991178 - 50 3.17e-17 GAG CGTCCCTGCACACACACACACACTCACACACACACACACACGACCCCT GCGGCCACGG chr19:35881955-35882455 + 11 5.91e-17 ataaaaataa aaataaaaaataaataaataaataaataaataaataaataaataaaAt ccaagtgata chr1:156660143-156660643 - 44 1.09e-16 TCACACACA CGCATGCGCGTACACACACGCACGCGTACACACACACACACACACAGG CACACGCGGG chr18:48873509-48874009 - 32 3.54e-16 AGCGAAACTC CGTCTCAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATA AATCACAGAG chr6:73461362-73461862 + 2 4.92e-16 a aataaataaataaataaataaataaataaataaaaataaaaaataata ataataaaaa chr17:76671171-76671671 - 20 3.42e-14 CAGACGGCGG TACTGCAGCTGGCGCCAAGACACACACACACACACACACACACACCCT TGCTTTTCAC chr1:226308675-226309175 + 17 2.70e-12 CGGTTTCCGG CCCTGGCGCTCACACAACCCCAGAAACCAACACACAGACACCATAACA AAGGCGGCGA chr19:36214222-36214722 + 49 6.41e-12 GACAGGCGGT TACACGTGCACAGTTGCAGACACCCACACCCAGCCACACAGCCACAAA GACA chr15:75023461-75023961 - 33 3.84e-11 CACACAGGGG AAAATAAGGACACACACAGACAGCCGTGGACCCACGCTCGCGGACACA GCTCCCCGAA chr19:36572875-36573375 + 22 6.43e-11 CTCCGTCTCT CACACACACACACCACAATGACGTCGTAAACAATAGCACTAACCACCA TCGTCCGCAG chr18:58781638-58782138 - 37 2.54e-10 ACACACCCCT TACCCCATGCCACACACATACAACATCACACGCACACATCATGCACAT AATCACACAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACRCACACACACACACACACACACACACACACACACACAMACA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:111568239-111568739 4.3e-30 2_[-1]_50 chr2:169364415-169364915 4.3e-30 3_[-1]_49 chr5:121961486-121961986 4.3e-30 13_[+1]_39 chr6:134052040-134052540 3.5e-27 5_[+1]_47 chr15:74223468-74223968 7.2e-25 50_[+1]_2 chr19:35947356-35947856 2.7e-24 34_[-1]_18 chr12:57112008-57112508 9.1e-24 5_[+1]_47 chr1:184386540-184387040 9.8e-22 27_[+1]_25 chr1:201435681-201436181 2.1e-21 20_[-1]_32 chr1:21345628-21346128 9.9e-21 52_[-1] chr17:73310554-73311054 9.9e-21 1_[+1]_51 chr1:150235816-150236316 4.9e-20 8_[+1]_44 chr13:75480661-75481161 1.9e-18 4_[+1]_48 chr5:160008634-160009134 3.1e-18 18_[+1]_34 chr1:6404487-6404987 3.1e-18 21_[+1]_31 chr19:53979840-53980340 8e-18 16_[-1]_36 chr15:70097553-70098053 2.2e-17 23_[+1]_29 chr12:990678-991178 3.2e-17 49_[-1]_3 chr19:35881955-35882455 5.9e-17 10_[+1]_42 chr1:156660143-156660643 1.1e-16 43_[-1]_9 chr18:48873509-48874009 3.5e-16 31_[-1]_21 chr6:73461362-73461862 4.9e-16 1_[+1]_51 chr17:76671171-76671671 3.4e-14 19_[-1]_33 chr1:226308675-226309175 2.7e-12 16_[+1]_36 chr19:36214222-36214722 6.4e-12 48_[+1]_4 chr15:75023461-75023961 3.8e-11 32_[-1]_20 chr19:36572875-36573375 6.4e-11 21_[+1]_31 chr18:58781638-58782138 2.5e-10 36_[-1]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACRCACACACACACACACACACACACACACACACACACAMACA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACACRCACACACACACACACACACACACACACACACACACAMACA width=48 seqs=28 chr6:111568239-111568739 ( 3) CACACACACACACACACACACACACACACACACACACACACACACACA 1 chr2:169364415-169364915 ( 4) CACACACACACACACACACACACACACACACACACACACACACACACA 1 chr5:121961486-121961986 ( 14) CACACACACACACACACACACACACACACACACACACACACACACACA 1 chr6:134052040-134052540 ( 6) CGCATACACACACACACACACACACACACACACACACACACACACACA 1 chr15:74223468-74223968 ( 51) AGCATACACACACACACACACACACACACACACACACACACACACACG 1 chr19:35947356-35947856 ( 35) CACACACACACACACACACACACACACACACACACACACACGAACAGT 1 chr12:57112008-57112508 ( 6) CACAACACCACACACACACACACACACACACACACACACACACACACA 1 chr1:184386540-184387040 ( 28) TACACACACACACACACCTGCCCACACACACACACACACACACACACA 1 chr1:201435681-201436181 ( 21) CACACACACACACACACACACACACACACACACAGGCACGCGCACACA 1 chr1:21345628-21346128 ( 53) CGCGCGCGCACACACACACACACACACACACACACACACACACAAGCA 1 chr17:73310554-73311054 ( 2) CACACACACACACACACACACACACACACACACACACACGCACTTCAG 1 chr1:150235816-150236316 ( 9) CACACGCACGCACGCGCGCACACACATACACACACACATACACACACA 1 chr13:75480661-75481161 ( 5) CGCACACGCACGCACACACACACACACACACACACACACACGGCAAGC 1 chr5:160008634-160009134 ( 19) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATA 1 chr1:6404487-6404987 ( 22) AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATA 1 chr19:53979840-53980340 ( 17) CACTCACGCGCGCGCGCGCACACACACACACACACACACACACACACG 1 chr15:70097553-70098053 ( 24) CCAACACACACACACGCGCGCACGCACACACACACACACCAAAAAAAA 1 chr12:990678-991178 ( 50) CGTCCCTGCACACACACACACACTCACACACACACACACACGACCCCT 1 chr19:35881955-35882455 ( 11) AAATAAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAAT 1 chr1:156660143-156660643 ( 44) CGCATGCGCGTACACACACGCACGCGTACACACACACACACACACAGG 1 chr18:48873509-48874009 ( 32) CGTCTCAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATA 1 chr6:73461362-73461862 ( 2) AATAAATAAATAAATAAATAAATAAATAAATAAAAATAAAAAATAATA 1 chr17:76671171-76671671 ( 20) TACTGCAGCTGGCGCCAAGACACACACACACACACACACACACACCCT 1 chr1:226308675-226309175 ( 17) CCCTGGCGCTCACACAACCCCAGAAACCAACACACAGACACCATAACA 1 chr19:36214222-36214722 ( 49) TACACGTGCACAGTTGCAGACACCCACACCCAGCCACACAGCCACAAA 1 chr15:75023461-75023961 ( 33) AAAATAAGGACACACACAGACAGCCGTGGACCCACGCTCGCGGACACA 1 chr19:36572875-36573375 ( 22) CACACACACACACCACAATGACGTCGTAAACAATAGCACTAACCACCA 1 chr18:58781638-58782138 ( 37) TACCCCATGCCACACACATACAACATCACACGCACACATCATGCACAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACRCACACACACACACACACACACACACACACACACACAMACA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 48 n= 31800 bayes= 10.7543 E= 6.6e-240 22 102 -1145 -36 188 -214 -34 -1145 -78 117 -1145 -4 196 -156 -314 -36 -4 85 -214 -4 181 -82 -82 -1145 22 94 -1145 -4 172 -314 2 -236 -4 125 -214 -1145 210 -314 -156 -136 -1145 125 -314 22 228 -1145 -156 -1145 -4 131 -314 -1145 216 -314 -156 -236 -236 125 -1145 22 210 -214 -115 -1145 64 117 -1145 -1145 216 -214 -156 -1145 -1145 94 -156 64 216 -314 -115 -1145 22 131 -1145 -1145 234 -214 -1145 -1145 -236 110 -156 -4 203 -156 -214 -136 44 125 -1145 -1145 222 -1145 -156 -236 -1145 110 -1145 81 234 -314 -314 -1145 44 117 -314 -1145 239 -314 -1145 -1145 -1145 138 -1145 -4 234 -314 -314 -1145 22 125 -314 -1145 234 -314 -1145 -236 -136 125 -314 -36 228 -1145 -156 -1145 -36 131 -314 -236 239 -1145 -1145 -236 -236 125 -1145 22 210 -214 -156 -236 64 110 -314 -1145 196 -214 -82 -236 -4 85 -156 -36 203 -115 -1145 -78 110 85 -1145 -236 210 -82 -314 -1145 -4 85 -156 -36 181 -314 -115 -4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACRCACACACACACACACACACACACACACACACACACAMACA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 48 nsites= 28 E= 6.6e-240 0.214286 0.642857 0.000000 0.142857 0.678571 0.071429 0.250000 0.000000 0.107143 0.714286 0.000000 0.178571 0.714286 0.107143 0.035714 0.142857 0.178571 0.571429 0.071429 0.178571 0.642857 0.178571 0.178571 0.000000 0.214286 0.607143 0.000000 0.178571 0.607143 0.035714 0.321429 0.035714 0.178571 0.750000 0.071429 0.000000 0.785714 0.035714 0.107143 0.071429 0.000000 0.750000 0.035714 0.214286 0.892857 0.000000 0.107143 0.000000 0.178571 0.785714 0.035714 0.000000 0.821429 0.035714 0.107143 0.035714 0.035714 0.750000 0.000000 0.214286 0.785714 0.071429 0.142857 0.000000 0.285714 0.714286 0.000000 0.000000 0.821429 0.071429 0.107143 0.000000 0.000000 0.607143 0.107143 0.285714 0.821429 0.035714 0.142857 0.000000 0.214286 0.785714 0.000000 0.000000 0.928571 0.071429 0.000000 0.000000 0.035714 0.678571 0.107143 0.178571 0.750000 0.107143 0.071429 0.071429 0.250000 0.750000 0.000000 0.000000 0.857143 0.000000 0.107143 0.035714 0.000000 0.678571 0.000000 0.321429 0.928571 0.035714 0.035714 0.000000 0.250000 0.714286 0.035714 0.000000 0.964286 0.035714 0.000000 0.000000 0.000000 0.821429 0.000000 0.178571 0.928571 0.035714 0.035714 0.000000 0.214286 0.750000 0.035714 0.000000 0.928571 0.035714 0.000000 0.035714 0.071429 0.750000 0.035714 0.142857 0.892857 0.000000 0.107143 0.000000 0.142857 0.785714 0.035714 0.035714 0.964286 0.000000 0.000000 0.035714 0.035714 0.750000 0.000000 0.214286 0.785714 0.071429 0.107143 0.035714 0.285714 0.678571 0.035714 0.000000 0.714286 0.071429 0.178571 0.035714 0.178571 0.571429 0.107143 0.142857 0.750000 0.142857 0.000000 0.107143 0.392857 0.571429 0.000000 0.035714 0.785714 0.178571 0.035714 0.000000 0.178571 0.571429 0.107143 0.142857 0.642857 0.035714 0.142857 0.178571 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACRCACACACACACACACACACACACACACACACACACAMACA MEME-1 regular expression -------------------------------------------------------------------------------- [CA][AG]CACA[CA][AG]CA[CT]ACA[CT]A[CA]A[CT]A[CA]ACA[CA]A[CT]A[CA]ACA[CA]ACACA[CT]A[CA]ACA[CA]ACA -------------------------------------------------------------------------------- Time 418.75 secs. ******************************************************************************** ******************************************************************************** MOTIF GRAGGGRRDGVRGRAGGRGRVG MEME-2 width = 22 sites = 96 llr = 955 E-value = 4.7e-028 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRAGGGRRDGVRGRAGGRGRVG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 246:225532343391232431 pos.-specific C :13::1:1223:::1:221:3: probability G 84197753364576:9556548 matrix T ::111:1:2:11:1::1:1111 bits 2.4 2.2 2.0 1.7 * Relative 1.5 * Entropy 1.2 * * (14.4 bits) 1.0 * * * ** * 0.7 * ***** **** * * 0.5 ******** * ***** * * * 0.2 ********** ***** *** * 0.0 ---------------------- Multilevel GAAGGGGAAGGGGGAGGGGGGG consensus AGC A AGGACAAA AAAC sequence A C A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAGGGRRDGVRGRAGGRGRVG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr17:67993893-67994393 + 25 1.42e-09 GCCGAGAGGG GAAGGGAAGCCAGGAGGGGAGG AGGCCGCTAG chr15:99565602-99566102 + 48 2.53e-08 GAGAAGCGAG GAAGGGAACCCAGGAGGGAGGG GAGGCAGGGC chr17:45148320-45148820 + 43 3.10e-08 gggggaggag ggagggaggaaaagaggaggag gcggaggaga chr1:15526614-15527114 - 25 5.57e-08 CTGGGCCTGG GGAGGGGAAAGAGGAGGGGACA AGCCCGAGGG chr18:59358757-59359257 + 17 5.57e-08 GATGAAAGGC GAAGAGGCAGCAGAAGGGGGAG AGGAACCCGG chr5:176388742-176389242 + 78 6.72e-08 CAGTGATGTC GGAGGGAAGGAAGTAGAGAAGG A chr1:213987975-213988475 - 53 8.07e-08 AGGCGGGAGG GGAGGGGAGACGAGAGAAGAGG AGCAGGGGAG chr12:12611677-12612177 + 47 9.66e-08 AGACTGTCAT ggagggggaggaggaggcggcg gcggcgaagg chr17:7836757-7837257 - 10 1.63e-07 AAGACCACGG GAAGGGAGAGGGGAAAGAGATG GCACGGGAC chr12:49060539-49061039 + 4 1.92e-07 CGA GAGGGGGAGAAAGGAGAAGAGG CGGCCCTATT chr13:113296704-11329720 - 52 2.26e-07 GGTTCGCGGA AAAGGAAGAGGAAGAGTAGTGG CGGGAGAAAG chr10:42782510-42783010 - 24 2.66e-07 CTGACTCGCC GGAGGGAAACAAGAAGGCAGAA AAAAGAGACC chr1:201435681-201436181 + 78 3.12e-07 gtgAagagag agagagaaacagagagagaaag g chr1:234723934-234724434 + 8 3.65e-07 gggagag ggagggaggaagggaggaggga ggtggagaga chr1:151790087-151790587 - 22 3.65e-07 GCCACTAGGA GACGGAAATGCGGGAGCGAGGG AAGGGAGGGG chr10:73730274-73730774 + 60 4.94e-07 CCGACTCTCC GGAGGGAAACAAAAAGGCAGAA AAAAGAGACC chr1:109100079-109100579 - 70 4.94e-07 AATAAGATC AAAGTGTAAGCGGGAGGAGGGG CGCAGGGGTG chr1:155017241-155017741 - 61 5.73e-07 GGCGGGGAGG AGATGGGGAGGAGGAGAAGAGG GTAGGACGCC chr6:138988034-138988534 + 59 5.73e-07 GAGGCCGGga ggagagagcgcgagagggagag agaAACACCC chr4:24472607-24473107 + 21 6.63e-07 GCGAGAGACC GCAGGGGAAGCGAGAGGGCGAG ATAATGAGCG chr1:155562849-155563349 - 62 6.63e-07 GCCGCGATCC GGCGGAGGAGGAGGAGCAGAGG GAGGCGAGCC chr12:2812672-2813172 + 29 1.01e-06 TCTGTGCAGG GACGGGGCAAGGGAAGTGGAAG AGGCCGCCCG chr7:97872037-97872537 - 19 1.16e-06 GGCTGCTCCG GAAGGAAGGGGTGGAGGATGCG GTCTTCAGCC chr1:179882513-179883013 + 75 1.16e-06 CGATTCTGCG AAAGAGGAAGTGAGAGAAAGCG CGTA chr1:206612153-206612653 + 10 1.33e-06 TGGCCTGGG GAAGAGAGCACAGAAGCCAGGG AATGTCAAGA chr6:85642951-85643451 - 79 1.33e-06 . GGAGGGAGTGAGGGAGCGTGCG AGCCAGAAGG chr11:112961122-11296162 - 4 1.52e-06 GATGGAACTG GGATGGGAGCGAGGAGCGGGGG GCG chr17:59209750-59210250 + 5 1.97e-06 GAAA GCAGGAACTGAAGAAGCGGAGG AAGGATTTCA chr5:137754408-137754908 - 66 1.97e-06 TGGGCGAGGG GATGAGTAAAGGGGAGGGGGAG AAACACTGGG chr1:225653504-225654004 + 22 2.23e-06 GCGGTCTCAG GACGGGGATGAGGGAATCGGGG GGCATCCCGG chr15:68277485-68277985 - 46 2.23e-06 ACAGGGCCGG GAGGAGAGGGCGGGAGCGGGAG GGACGCTAAG chr12:53501143-53501643 + 59 2.53e-06 CGGGGACGGA GGAGGGAATGAGTGAAGAGGAG CAAGGCTCCG chr12:113185234-11318573 + 29 2.53e-06 CGGGCCGCGC GCTGGGAACGCAGAAGGGGGCG TGGCCTGAGG chr11:47578712-47579212 - 54 2.86e-06 CTTCCGGGCG GACGTGGAGCCGGAAGCGGAGG TTCCGGGCTC chr1:109484194-109484694 - 50 2.86e-06 GGGGGGTGAG GAAGGGGGCACAGAAGTGGGGT GCGTGGGAAA chr12:95217702-95218202 + 36 3.23e-06 AGAAGGACGA GACGGAAATCGAGGAAGCAAGG CGTTCCCGGG chr4:151099422-151099922 + 72 3.23e-06 AAGGCGGCAA AAAGGGAGCCAAGAAGAAAGTG TAAGTCG chr19:42075377-42075877 - 4 3.23e-06 AGTCACATGG AGAGAGAAAAGGGAAACCAAGG TTC chr18:46104259-46104759 - 71 3.23e-06 TGTGTGGA ATAGGGGAGAGAAAAGTAGACG TGGCGCGCAC chr17:59565397-59565897 - 9 3.64e-06 CGATCTGAGG AGATGGGAGGGGAAAGACGAGG ACGCGCCC chr5:134370985-134371485 + 31 4.10e-06 CTAAACTAGT GACGGGGAGGGAGACGGGATAG TGTTTCTGTT chr12:106357565-10635806 + 61 4.61e-06 TTTGCTTGGT GCAGGGAAGGCGGGCGCGGAGG TTCTATCTGT chr13:111153219-11115371 + 29 4.61e-06 AGAGACCGAA GACTGGACAGGAGGAGGCGGCG GTGGCCGCGC chr5:32174235-32174735 - 76 4.61e-06 GGG GAACGGAAGGAGGGAGGGCACG TCACGGGAGC chr17:40287816-40288316 + 77 5.17e-06 GGCCTGAGGT GAAGTGAAGGGAAAAGAGCTGA GC chr1:44213265-44213765 + 22 7.23e-06 GCTTTGCGGG GACGGGGGAGTGGTAGTGGGGG CTGCAGCTGC chr1:108746545-108747045 + 56 8.06e-06 GTGCGGTGGG GTAGGGGTTGAGAGAGGGAAGG CCGGGAGGCT chr13:30617592-30618092 - 33 9.97e-06 ACGGTGGCGT GGCGGGGAAGGTGAAGACGTGA GCACTTCCGG chr17:50397287-50397787 - 24 9.97e-06 CGCGGAAGGT GACGTGGACACGGAAGTGGTCG TCGTCGCGGC chr1:26695378-26695878 - 26 1.11e-05 TCCCTTCACA AAGGAGGAGGGGAGAGAACAAG CCGCGGCGGC chr1:85048428-85048928 - 53 1.23e-05 GGGAGAAAAT GAAGGGAGTGATAGGGTGGGGG TGGCAGGGAA chr2:223957185-223957685 - 47 1.36e-05 GAAAACGATG GAAGACGGAACGAAAGTAGTCG GGCCAGTGTC chr17:32350058-32350558 + 42 1.36e-05 GTCGCAAGAA GAAGAAGCAGCTGAAGCCGTGG TGCTGGTATC chr5:73216004-73216504 + 54 1.36e-05 CAGAGCACGC GGAGAGGGACCTGGAGCGCGGG AGCCAGGACG chr2:165953820-165954320 + 54 1.50e-05 AATAAAGGAA ACGGAGTATGAAGAAGGGGAAG TCTGTTTCCT chr19:36837952-36838452 - 26 1.66e-05 CGCGATGGGA GCAGTGGATGCGAGAGTGAAAT TGATGCAGGA chr1:26432180-26432680 + 11 1.66e-05 CACTGAACTG AAGGGGTGAACTAGAGGAGAAG AGGGTGACTG chr13:40770980-40771480 - 16 2.01e-05 CCAGGCCGGA AGCGGAAGAGAGGGCGGGGACG TGTTTGGCAG chr6:16947428-16947928 - 56 2.22e-05 GAACTGCATG GAAGTGATTACAAGAGAGATAA TGGACAATTA chr12:53006498-53006998 + 70 2.22e-05 TTGAATTGGG GAAGGAGGCGCAGAAAGGTGTG CGGGTGGTG chr1:173714790-173715290 + 31 2.22e-05 gaggcagaga ggagtggagggcggagtagacg gaggaggCTG chr10:27998261-27998761 + 40 2.44e-05 GCAGGGAAGC GGCGGGAGAAGTGGAGAGCGGA TCCGGGAGGT chr15:75368098-75368598 - 33 2.44e-05 GGCAGGGGCC GGGGAGGAGGGGGTAGGGAATG GACTGTGCCG chr4:77075921-77076421 + 71 2.67e-05 GTTGGCACTA GGATGGAAGGAGGGAGGACGTT TTCTCGTG chr22:41446754-41447254 - 49 2.67e-05 CGGCGCTGTG ACAGGGAGGGGAAGACGGGGAG CCGGACGCAC chr18:35497695-35498195 - 35 2.67e-05 CATCAAGACG GAAGTAACAGCGGAAAGGAAGT TCCAAGGCCC chr1:183471792-183472292 + 43 2.93e-05 GGGGAAGAGT GGAGGCGTGCAAAAAGGAAGAG GGAAATCGGC chr7:112790011-112790511 + 46 2.93e-05 TTCAGCCTGC GACTGAGAACAGGGAGGCGGCA CGCCTTGGGG chr1:224434745-224435245 - 32 2.93e-05 GCGGGGCCGG GGATAGGATCGGATAGGAGTCG GGGTCGTGGA chr1:244451460-244451960 - 16 3.21e-05 GTGGGGCGAC GAAGGCAAAGGGAAGGTGGTGG ACCTGCTGGC chr17:7484173-7484673 + 15 3.21e-05 CGAGAGCGCG GCCGGGACGGTTGGAGAAGAAG GCGGCTCCCG chr13:52194185-52194685 - 59 3.51e-05 AACAAGCCAG ACCGGAAACGGAGGAGAGCGCG GGGGATGTGT chr5:116574668-116575168 - 18 3.51e-05 AGCCAAAGTA GGCGGAGTTGCGGAAGGAGAGT CCGATCTGCG chr6:125956694-125957194 + 2 3.51e-05 C GGAGGAGGTGCGGGACGCGGAG ACTGCGCGGG chr1:65420609-65421109 - 36 3.51e-05 CGCCTCCCGA ACCGGAGAGGCGGGAAGGGTGG TGAGGCCGTT chr1:226939558-226940058 + 34 3.84e-05 CTTGCTACAT AGAGAGGAGCAAAGAACAGGCA TCGCCCGGTC chr12:45991750-45992250 - 78 3.84e-05 G GAAGGCGGCAGTGAAGCGGTCG GTCGGCGGGG chr4:4541817-4542317 + 60 4.19e-05 TCCCCCCGGC AACGGCGACGCGAGAAGAAAGG TTCCGGCCTG chr15:40695058-40695558 + 47 4.57e-05 TGGGGCAAGC GAGTAGAGAAGTGGAGCGTAAG CCAGGGGCGT chr1:230978931-230979431 - 36 4.98e-05 CTGGCAGGAG GCCGAGGCAGCAGTAGGAGTCG CTGCCACCCC chr2:71068472-71068972 + 74 4.98e-05 GCCTGGGCCC GAAGGCGGGGCGGAAGGCCGTG GCCAG chr14:55051607-55052107 + 16 4.98e-05 CTTCGGTACT AGTGGGAGTCGTGAAGGGGAAT CGGGGAGCTG chr1:12478072-12478572 + 60 4.98e-05 TAACCAGCAC GACGAAAAGGAGATAATATGAG CCTTCGTGAT chr7:99465811-99466311 - 59 4.98e-05 TTTGGACTCC GTGGTGGAAGCAGGAGCCAGGG TCCAGGGTCC chr12:123601746-12360224 - 30 5.42e-05 CCACGCCGCG GGAGGGAGGAAAGGCGTCCGCG GGACGGTGGA chrX:72276889-72277389 + 52 5.42e-05 GCCCCGGCCG GGGGAGGATGGAGGCGGATACG TCCTAAGAGC chr10:73413703-73414203 + 71 5.89e-05 CCACCGAGGC AGACGAGGTGGGAAAGGGAGGG GGGCGCCG chr5:98929178-98929678 + 29 7.52e-05 GAGAGACTGC GATGGGACTCGGGAAGCCGGGA AGGGCCGCGC chr2:55268991-55269491 - 57 7.52e-05 CCGGAAGCCC GGCGGGGACCGTAGCGGGGACG GACTGACCTA chr19:41310077-41310577 + 63 8.15e-05 CGACGGCGGC GAAGGAACCCGATAAGGGTGAG ATCTTGGTCA chr19:38831525-38832025 - 48 8.82e-05 CCGTCCGAAC GCAGTAGACGAAGGCGGCGGCG ATGGCGGCGG chr1:244652283-244652783 - 20 8.82e-05 CAAGGGGAGT GGTGGGGAAATAGAGGAAGACG AGTTACTGGT chr12:50112116-50112616 - 63 9.53e-05 CAGGCCTGCA GACTAGGGGATGGGAGGACGCG GCAAGCGGAG chr5:163505506-163506006 + 70 1.03e-04 GGGCGTCTCC GGTGGGAGCGGGGGCGCCGAGG GGGACGAGC chr10:120850984-12085148 + 72 1.29e-04 AACCTGGGGG CGATGGAATCCGGGAGCGGTGG AACCCGG chr18:32091745-32092245 + 31 1.29e-04 TTCGGTGACG GCCGGGTAGGCTGTAGGCAGCG CAATGCCAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAGGGRRDGVRGRAGGRGRVG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:67993893-67994393 1.4e-09 24_[+2]_54 chr15:99565602-99566102 2.5e-08 47_[+2]_31 chr17:45148320-45148820 3.1e-08 42_[+2]_36 chr1:15526614-15527114 5.6e-08 24_[-2]_54 chr18:59358757-59359257 5.6e-08 16_[+2]_62 chr5:176388742-176389242 6.7e-08 77_[+2]_1 chr1:213987975-213988475 8.1e-08 52_[-2]_26 chr12:12611677-12612177 9.7e-08 46_[+2]_32 chr17:7836757-7837257 1.6e-07 9_[-2]_69 chr12:49060539-49061039 1.9e-07 3_[+2]_75 chr13:113296704-11329720 2.3e-07 51_[-2]_27 chr10:42782510-42783010 2.7e-07 23_[-2]_55 chr1:201435681-201436181 3.1e-07 77_[+2]_1 chr1:234723934-234724434 3.6e-07 7_[+2]_71 chr1:151790087-151790587 3.6e-07 21_[-2]_57 chr10:73730274-73730774 4.9e-07 59_[+2]_19 chr1:109100079-109100579 4.9e-07 69_[-2]_9 chr1:155017241-155017741 5.7e-07 60_[-2]_18 chr6:138988034-138988534 5.7e-07 58_[+2]_20 chr4:24472607-24473107 6.6e-07 20_[+2]_58 chr1:155562849-155563349 6.6e-07 61_[-2]_17 chr12:2812672-2813172 1e-06 28_[+2]_50 chr7:97872037-97872537 1.2e-06 18_[-2]_60 chr1:179882513-179883013 1.2e-06 74_[+2]_4 chr1:206612153-206612653 1.3e-06 9_[+2]_69 chr6:85642951-85643451 1.3e-06 78_[-2] chr11:112961122-11296162 1.5e-06 3_[-2]_75 chr17:59209750-59210250 2e-06 4_[+2]_74 chr5:137754408-137754908 2e-06 65_[-2]_13 chr1:225653504-225654004 2.2e-06 21_[+2]_57 chr15:68277485-68277985 2.2e-06 45_[-2]_33 chr12:53501143-53501643 2.5e-06 58_[+2]_20 chr12:113185234-11318573 2.5e-06 28_[+2]_50 chr11:47578712-47579212 2.9e-06 53_[-2]_25 chr1:109484194-109484694 2.9e-06 49_[-2]_29 chr12:95217702-95218202 3.2e-06 35_[+2]_43 chr4:151099422-151099922 3.2e-06 71_[+2]_7 chr19:42075377-42075877 3.2e-06 3_[-2]_75 chr18:46104259-46104759 3.2e-06 70_[-2]_8 chr17:59565397-59565897 3.6e-06 8_[-2]_70 chr5:134370985-134371485 4.1e-06 30_[+2]_48 chr12:106357565-10635806 4.6e-06 60_[+2]_18 chr13:111153219-11115371 4.6e-06 28_[+2]_50 chr5:32174235-32174735 4.6e-06 75_[-2]_3 chr17:40287816-40288316 5.2e-06 76_[+2]_2 chr1:44213265-44213765 7.2e-06 21_[+2]_57 chr1:108746545-108747045 8.1e-06 55_[+2]_23 chr13:30617592-30618092 1e-05 32_[-2]_46 chr17:50397287-50397787 1e-05 23_[-2]_55 chr1:26695378-26695878 1.1e-05 25_[-2]_53 chr1:85048428-85048928 1.2e-05 52_[-2]_26 chr2:223957185-223957685 1.4e-05 46_[-2]_32 chr17:32350058-32350558 1.4e-05 41_[+2]_37 chr5:73216004-73216504 1.4e-05 53_[+2]_25 chr2:165953820-165954320 1.5e-05 53_[+2]_25 chr19:36837952-36838452 1.7e-05 25_[-2]_53 chr1:26432180-26432680 1.7e-05 10_[+2]_68 chr13:40770980-40771480 2e-05 15_[-2]_63 chr6:16947428-16947928 2.2e-05 55_[-2]_23 chr12:53006498-53006998 2.2e-05 69_[+2]_9 chr1:173714790-173715290 2.2e-05 30_[+2]_48 chr10:27998261-27998761 2.4e-05 39_[+2]_39 chr15:75368098-75368598 2.4e-05 32_[-2]_46 chr4:77075921-77076421 2.7e-05 70_[+2]_8 chr22:41446754-41447254 2.7e-05 48_[-2]_30 chr18:35497695-35498195 2.7e-05 34_[-2]_44 chr1:183471792-183472292 2.9e-05 42_[+2]_36 chr7:112790011-112790511 2.9e-05 45_[+2]_33 chr1:224434745-224435245 2.9e-05 31_[-2]_47 chr1:244451460-244451960 3.2e-05 15_[-2]_63 chr17:7484173-7484673 3.2e-05 14_[+2]_64 chr13:52194185-52194685 3.5e-05 58_[-2]_20 chr5:116574668-116575168 3.5e-05 17_[-2]_61 chr6:125956694-125957194 3.5e-05 1_[+2]_77 chr1:65420609-65421109 3.5e-05 35_[-2]_43 chr1:226939558-226940058 3.8e-05 33_[+2]_45 chr12:45991750-45992250 3.8e-05 77_[-2]_1 chr4:4541817-4542317 4.2e-05 59_[+2]_19 chr15:40695058-40695558 4.6e-05 46_[+2]_32 chr1:230978931-230979431 5e-05 35_[-2]_43 chr2:71068472-71068972 5e-05 73_[+2]_5 chr14:55051607-55052107 5e-05 15_[+2]_63 chr1:12478072-12478572 5e-05 59_[+2]_19 chr7:99465811-99466311 5e-05 58_[-2]_20 chr12:123601746-12360224 5.4e-05 29_[-2]_49 chrX:72276889-72277389 5.4e-05 51_[+2]_27 chr10:73413703-73414203 5.9e-05 70_[+2]_8 chr5:98929178-98929678 7.5e-05 28_[+2]_50 chr2:55268991-55269491 7.5e-05 56_[-2]_22 chr19:41310077-41310577 8.1e-05 62_[+2]_16 chr19:38831525-38832025 8.8e-05 47_[-2]_31 chr1:244652283-244652783 8.8e-05 19_[-2]_59 chr12:50112116-50112616 9.5e-05 62_[-2]_16 chr5:163505506-163506006 0.0001 69_[+2]_9 chr10:120850984-12085148 0.00013 71_[+2]_7 chr18:32091745-32092245 0.00013 30_[+2]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAGGGRRDGVRGRAGGRGRVG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRAGGGRRDGVRGRAGGRGRVG width=22 seqs=96 chr17:67993893-67994393 ( 25) GAAGGGAAGCCAGGAGGGGAGG 1 chr15:99565602-99566102 ( 48) GAAGGGAACCCAGGAGGGAGGG 1 chr17:45148320-45148820 ( 43) GGAGGGAGGAAAAGAGGAGGAG 1 chr1:15526614-15527114 ( 25) GGAGGGGAAAGAGGAGGGGACA 1 chr18:59358757-59359257 ( 17) GAAGAGGCAGCAGAAGGGGGAG 1 chr5:176388742-176389242 ( 78) GGAGGGAAGGAAGTAGAGAAGG 1 chr1:213987975-213988475 ( 53) GGAGGGGAGACGAGAGAAGAGG 1 chr12:12611677-12612177 ( 47) GGAGGGGGAGGAGGAGGCGGCG 1 chr17:7836757-7837257 ( 10) GAAGGGAGAGGGGAAAGAGATG 1 chr12:49060539-49061039 ( 4) GAGGGGGAGAAAGGAGAAGAGG 1 chr13:113296704-11329720 ( 52) AAAGGAAGAGGAAGAGTAGTGG 1 chr10:42782510-42783010 ( 24) GGAGGGAAACAAGAAGGCAGAA 1 chr1:201435681-201436181 ( 78) AGAGAGAAACAGAGAGAGAAAG 1 chr1:234723934-234724434 ( 8) GGAGGGAGGAAGGGAGGAGGGA 1 chr1:151790087-151790587 ( 22) GACGGAAATGCGGGAGCGAGGG 1 chr10:73730274-73730774 ( 60) GGAGGGAAACAAAAAGGCAGAA 1 chr1:109100079-109100579 ( 70) AAAGTGTAAGCGGGAGGAGGGG 1 chr1:155017241-155017741 ( 61) AGATGGGGAGGAGGAGAAGAGG 1 chr6:138988034-138988534 ( 59) GGAGAGAGCGCGAGAGGGAGAG 1 chr4:24472607-24473107 ( 21) GCAGGGGAAGCGAGAGGGCGAG 1 chr1:155562849-155563349 ( 62) GGCGGAGGAGGAGGAGCAGAGG 1 chr12:2812672-2813172 ( 29) GACGGGGCAAGGGAAGTGGAAG 1 chr7:97872037-97872537 ( 19) GAAGGAAGGGGTGGAGGATGCG 1 chr1:179882513-179883013 ( 75) AAAGAGGAAGTGAGAGAAAGCG 1 chr1:206612153-206612653 ( 10) GAAGAGAGCACAGAAGCCAGGG 1 chr6:85642951-85643451 ( 79) GGAGGGAGTGAGGGAGCGTGCG 1 chr11:112961122-11296162 ( 4) GGATGGGAGCGAGGAGCGGGGG 1 chr17:59209750-59210250 ( 5) GCAGGAACTGAAGAAGCGGAGG 1 chr5:137754408-137754908 ( 66) GATGAGTAAAGGGGAGGGGGAG 1 chr1:225653504-225654004 ( 22) GACGGGGATGAGGGAATCGGGG 1 chr15:68277485-68277985 ( 46) GAGGAGAGGGCGGGAGCGGGAG 1 chr12:53501143-53501643 ( 59) GGAGGGAATGAGTGAAGAGGAG 1 chr12:113185234-11318573 ( 29) GCTGGGAACGCAGAAGGGGGCG 1 chr11:47578712-47579212 ( 54) GACGTGGAGCCGGAAGCGGAGG 1 chr1:109484194-109484694 ( 50) GAAGGGGGCACAGAAGTGGGGT 1 chr12:95217702-95218202 ( 36) GACGGAAATCGAGGAAGCAAGG 1 chr4:151099422-151099922 ( 72) AAAGGGAGCCAAGAAGAAAGTG 1 chr19:42075377-42075877 ( 4) AGAGAGAAAAGGGAAACCAAGG 1 chr18:46104259-46104759 ( 71) ATAGGGGAGAGAAAAGTAGACG 1 chr17:59565397-59565897 ( 9) AGATGGGAGGGGAAAGACGAGG 1 chr5:134370985-134371485 ( 31) GACGGGGAGGGAGACGGGATAG 1 chr12:106357565-10635806 ( 61) GCAGGGAAGGCGGGCGCGGAGG 1 chr13:111153219-11115371 ( 29) GACTGGACAGGAGGAGGCGGCG 1 chr5:32174235-32174735 ( 76) GAACGGAAGGAGGGAGGGCACG 1 chr17:40287816-40288316 ( 77) GAAGTGAAGGGAAAAGAGCTGA 1 chr1:44213265-44213765 ( 22) GACGGGGGAGTGGTAGTGGGGG 1 chr1:108746545-108747045 ( 56) GTAGGGGTTGAGAGAGGGAAGG 1 chr13:30617592-30618092 ( 33) GGCGGGGAAGGTGAAGACGTGA 1 chr17:50397287-50397787 ( 24) GACGTGGACACGGAAGTGGTCG 1 chr1:26695378-26695878 ( 26) AAGGAGGAGGGGAGAGAACAAG 1 chr1:85048428-85048928 ( 53) GAAGGGAGTGATAGGGTGGGGG 1 chr2:223957185-223957685 ( 47) GAAGACGGAACGAAAGTAGTCG 1 chr17:32350058-32350558 ( 42) GAAGAAGCAGCTGAAGCCGTGG 1 chr5:73216004-73216504 ( 54) GGAGAGGGACCTGGAGCGCGGG 1 chr2:165953820-165954320 ( 54) ACGGAGTATGAAGAAGGGGAAG 1 chr19:36837952-36838452 ( 26) GCAGTGGATGCGAGAGTGAAAT 1 chr1:26432180-26432680 ( 11) AAGGGGTGAACTAGAGGAGAAG 1 chr13:40770980-40771480 ( 16) AGCGGAAGAGAGGGCGGGGACG 1 chr6:16947428-16947928 ( 56) GAAGTGATTACAAGAGAGATAA 1 chr12:53006498-53006998 ( 70) GAAGGAGGCGCAGAAAGGTGTG 1 chr1:173714790-173715290 ( 31) GGAGTGGAGGGCGGAGTAGACG 1 chr10:27998261-27998761 ( 40) GGCGGGAGAAGTGGAGAGCGGA 1 chr15:75368098-75368598 ( 33) GGGGAGGAGGGGGTAGGGAATG 1 chr4:77075921-77076421 ( 71) GGATGGAAGGAGGGAGGACGTT 1 chr22:41446754-41447254 ( 49) ACAGGGAGGGGAAGACGGGGAG 1 chr18:35497695-35498195 ( 35) GAAGTAACAGCGGAAAGGAAGT 1 chr1:183471792-183472292 ( 43) GGAGGCGTGCAAAAAGGAAGAG 1 chr7:112790011-112790511 ( 46) GACTGAGAACAGGGAGGCGGCA 1 chr1:224434745-224435245 ( 32) GGATAGGATCGGATAGGAGTCG 1 chr1:244451460-244451960 ( 16) GAAGGCAAAGGGAAGGTGGTGG 1 chr17:7484173-7484673 ( 15) GCCGGGACGGTTGGAGAAGAAG 1 chr13:52194185-52194685 ( 59) ACCGGAAACGGAGGAGAGCGCG 1 chr5:116574668-116575168 ( 18) GGCGGAGTTGCGGAAGGAGAGT 1 chr6:125956694-125957194 ( 2) GGAGGAGGTGCGGGACGCGGAG 1 chr1:65420609-65421109 ( 36) ACCGGAGAGGCGGGAAGGGTGG 1 chr1:226939558-226940058 ( 34) AGAGAGGAGCAAAGAACAGGCA 1 chr12:45991750-45992250 ( 78) GAAGGCGGCAGTGAAGCGGTCG 1 chr4:4541817-4542317 ( 60) AACGGCGACGCGAGAAGAAAGG 1 chr15:40695058-40695558 ( 47) GAGTAGAGAAGTGGAGCGTAAG 1 chr1:230978931-230979431 ( 36) GCCGAGGCAGCAGTAGGAGTCG 1 chr2:71068472-71068972 ( 74) GAAGGCGGGGCGGAAGGCCGTG 1 chr14:55051607-55052107 ( 16) AGTGGGAGTCGTGAAGGGGAAT 1 chr1:12478072-12478572 ( 60) GACGAAAAGGAGATAATATGAG 1 chr7:99465811-99466311 ( 59) GTGGTGGAAGCAGGAGCCAGGG 1 chr12:123601746-12360224 ( 30) GGAGGGAGGAAAGGCGTCCGCG 1 chrX:72276889-72277389 ( 52) GGGGAGGATGGAGGCGGATACG 1 chr10:73413703-73414203 ( 71) AGACGAGGTGGGAAAGGGAGGG 1 chr5:98929178-98929678 ( 29) GATGGGACTCGGGAAGCCGGGA 1 chr2:55268991-55269491 ( 57) GGCGGGGACCGTAGCGGGGACG 1 chr19:41310077-41310577 ( 63) GAAGGAACCCGATAAGGGTGAG 1 chr19:38831525-38832025 ( 48) GCAGTAGACGAAGGCGGCGGCG 1 chr1:244652283-244652783 ( 20) GGTGGGGAAATAGAGGAAGACG 1 chr12:50112116-50112616 ( 63) GACTAGGGGATGGGAGGACGCG 1 chr5:163505506-163506006 ( 70) GGTGGGAGCGGGGGCGCCGAGG 1 chr10:120850984-12085148 ( 72) CGATGGAATCCGGGAGCGGTGG 1 chr18:32091745-32092245 ( 31) GCCGGGTAGGCTGTAGGCAGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAGGGRRDGVRGRAGGRGRVG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 10.5316 E= 4.7e-028 18 -492 130 -1323 129 -122 29 -255 169 -34 -175 -156 -1323 -392 147 -82 25 -1323 110 -82 11 -234 123 -1323 132 -1323 63 -182 150 -160 8 -214 86 -102 -2 11 25 -68 88 -1323 44 8 20 -182 111 -492 54 -44 61 -1323 114 -314 90 -1323 88 -133 227 -192 -334 -1323 -68 -392 145 -1323 -14 -68 63 -33 77 -60 60 -1323 38 -146 86 -133 103 -1323 60 -33 50 -22 36 -156 -68 -1323 138 -156 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAGGGRRDGVRGRAGGRGRVG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 96 E= 4.7e-028 0.208333 0.010417 0.781250 0.000000 0.447917 0.135417 0.385417 0.031250 0.593750 0.250000 0.093750 0.062500 0.000000 0.020833 0.875000 0.104167 0.218750 0.000000 0.677083 0.104167 0.197917 0.062500 0.739583 0.000000 0.458333 0.000000 0.489583 0.052083 0.520833 0.104167 0.333333 0.041667 0.333333 0.156250 0.312500 0.197917 0.218750 0.197917 0.583333 0.000000 0.250000 0.333333 0.364583 0.052083 0.395833 0.010417 0.458333 0.135417 0.281250 0.000000 0.697917 0.020833 0.343750 0.000000 0.583333 0.072917 0.885417 0.083333 0.031250 0.000000 0.114583 0.020833 0.864583 0.000000 0.166667 0.197917 0.489583 0.145833 0.312500 0.208333 0.479167 0.000000 0.239583 0.114583 0.572917 0.072917 0.375000 0.000000 0.479167 0.145833 0.260417 0.270833 0.406250 0.062500 0.114583 0.000000 0.822917 0.062500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAGGGRRDGVRGRAGGRGRVG MEME-2 regular expression -------------------------------------------------------------------------------- [GA][AG][AC]G[GA]G[GA][AG][AG][GA][GCA][GA][GA][GA]AGG[GAC][GA][GA][GCA]G -------------------------------------------------------------------------------- Time 785.53 secs. ******************************************************************************** ******************************************************************************** MOTIF GGSCGCCGCCATSTTG MEME-3 width = 16 sites = 26 llr = 317 E-value = 6.4e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGSCGCCGCCATSTTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :2::2:1:::9::1:1 pos.-specific C 2:58:a7:aa::3222 probability G 77328:1a::1:71:7 matrix T :22:::1::::a:78: bits 2.4 * 2.2 * 2.0 ** 1.7 * ** Relative 1.5 * ***** * Entropy 1.2 ** ***** * (17.6 bits) 1.0 ** ***** * 0.7 *** ******** 0.5 ** *** ********* 0.2 **************** 0.0 ---------------- Multilevel GGCCGCCGCCATGTTG consensus C G C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSCGCCGCCATSTTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr4:77862561-77863061 - 84 1.14e-09 C GGCCGCCGCCATGTTG GGCACTCCGG chr19:33521491-33521991 + 58 9.46e-09 CTCACCCGGT GGCCGCCGCCATGTTC GCCCGGCACC chr3:4466988-4467488 + 46 1.88e-08 GCCCTAGTGC GGGCGCAGCCATGTTG TCCCGCGGGC chr1:230642209-230642709 + 62 1.88e-08 GCCGCGGCGC GGGCGCTGCCATGTTG GCGGAAGCGG chr1:36464077-36464577 + 69 5.03e-08 CGGGTTACAT GGGCGCCGCCATGCTG GCCCAGGATC chr1:1406985-1407485 + 79 1.66e-07 GCACGCGCAG CGCCGCTGCCATCTTG CCCGGG chr3:183099148-183099648 + 81 1.88e-07 ACACCGCAGA GGCCGCCGCCATGTCC CTGG chr16:22297193-22297693 - 43 2.63e-07 TCTCCTCTCA GGCGGCGGCCATGTTG CTGGTGGAGA chr11:47248604-47249104 + 84 4.55e-07 CCGGAAGTGC GTTCGCCGCCATCTTA C chr7:149239427-149239927 - 40 6.23e-07 AAGCCGCCGC CGCCGCCGCCGTGTTG ATGCCAGGTG chr17:58006918-58007418 - 14 9.16e-07 CCGCGCTTTT CGTCACCGCCATGTCG GGAGGTGGTG chr5:150449718-150450218 - 76 1.11e-06 TCTAGCCAC GACCACCGCCATCATG GAATACAGGC chr15:64387589-64388089 - 71 1.34e-06 ACACCGCCCC AGCCACCGCCATCTTC CCCAGCCGGA chr1:206612153-206612653 + 78 1.46e-06 CCTCAGCCGT GGGGGCAGCCATGCTG GGGCCCG chr2:71068472-71068972 - 8 1.60e-06 CACCCCCATA GATCGCGGCCATGCTG CTGCTAC chr17:67366210-67366710 + 53 1.75e-06 TGGCGCTGTA GTCCACCTCCATCTTG ACGATGCGCC chr17:18781041-18781541 + 43 1.75e-06 AGGGCTGGCG TAGGGCCGCCATGTTG CAGCAGGTGA chr5:41870068-41870568 + 79 2.25e-06 AGAGGAGTTT GAGAGCCGCCATCTTC GGGCGG chr17:32341905-32342405 - 29 2.44e-06 GCCGCTCAGA GGCCGCCGCAATGCTC CCCTCTTTGC chr16:30698010-30698510 - 4 2.89e-06 TCACCAAAAT GGCCGCCGCCGTCTCG GCC chr1:226061590-226062090 + 63 2.89e-06 GAGGCCGACG CGACACAGCCATCTTG CGTCGGGGGC chr12:123458057-12345855 + 46 3.95e-06 CCGCGCTTGT GTGGGGCGCCATGTTG AAACCTGGCA chrX:104156611-104157111 - 82 4.93e-06 GTC GGTCGCCGCCATGACA GCGAGCGAGG chr19:33080925-33081425 - 65 6.12e-06 TGTCACTGTC CCGCGCCGCCATCCTG CTCTTCCGGG chr12:62260003-62260503 - 31 6.58e-06 GGCGCACTGG GTGCGCGGCCATGGTC TGCTGCCCCC chr11:116772695-11677319 - 64 8.07e-06 TCTCTGCCCC CGCCGCTGCCATGGCG GCAGCTCCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSCGCCGCCATSTTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:77862561-77863061 1.1e-09 83_[-3]_1 chr19:33521491-33521991 9.5e-09 57_[+3]_27 chr3:4466988-4467488 1.9e-08 45_[+3]_39 chr1:230642209-230642709 1.9e-08 61_[+3]_23 chr1:36464077-36464577 5e-08 68_[+3]_16 chr1:1406985-1407485 1.7e-07 78_[+3]_6 chr3:183099148-183099648 1.9e-07 80_[+3]_4 chr16:22297193-22297693 2.6e-07 42_[-3]_42 chr11:47248604-47249104 4.5e-07 83_[+3]_1 chr7:149239427-149239927 6.2e-07 39_[-3]_45 chr17:58006918-58007418 9.2e-07 13_[-3]_71 chr5:150449718-150450218 1.1e-06 75_[-3]_9 chr15:64387589-64388089 1.3e-06 70_[-3]_14 chr1:206612153-206612653 1.5e-06 77_[+3]_7 chr2:71068472-71068972 1.6e-06 7_[-3]_77 chr17:67366210-67366710 1.7e-06 52_[+3]_32 chr17:18781041-18781541 1.7e-06 42_[+3]_42 chr5:41870068-41870568 2.2e-06 78_[+3]_6 chr17:32341905-32342405 2.4e-06 28_[-3]_56 chr16:30698010-30698510 2.9e-06 3_[-3]_81 chr1:226061590-226062090 2.9e-06 62_[+3]_22 chr12:123458057-12345855 3.9e-06 45_[+3]_39 chrX:104156611-104157111 4.9e-06 81_[-3]_3 chr19:33080925-33081425 6.1e-06 64_[-3]_20 chr12:62260003-62260503 6.6e-06 30_[-3]_54 chr11:116772695-11677319 8.1e-06 63_[-3]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSCGCCGCCATSTTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGSCGCCGCCATSTTG width=16 seqs=26 chr4:77862561-77863061 ( 84) GGCCGCCGCCATGTTG 1 chr19:33521491-33521991 ( 58) GGCCGCCGCCATGTTC 1 chr3:4466988-4467488 ( 46) GGGCGCAGCCATGTTG 1 chr1:230642209-230642709 ( 62) GGGCGCTGCCATGTTG 1 chr1:36464077-36464577 ( 69) GGGCGCCGCCATGCTG 1 chr1:1406985-1407485 ( 79) CGCCGCTGCCATCTTG 1 chr3:183099148-183099648 ( 81) GGCCGCCGCCATGTCC 1 chr16:22297193-22297693 ( 43) GGCGGCGGCCATGTTG 1 chr11:47248604-47249104 ( 84) GTTCGCCGCCATCTTA 1 chr7:149239427-149239927 ( 40) CGCCGCCGCCGTGTTG 1 chr17:58006918-58007418 ( 14) CGTCACCGCCATGTCG 1 chr5:150449718-150450218 ( 76) GACCACCGCCATCATG 1 chr15:64387589-64388089 ( 71) AGCCACCGCCATCTTC 1 chr1:206612153-206612653 ( 78) GGGGGCAGCCATGCTG 1 chr2:71068472-71068972 ( 8) GATCGCGGCCATGCTG 1 chr17:67366210-67366710 ( 53) GTCCACCTCCATCTTG 1 chr17:18781041-18781541 ( 43) TAGGGCCGCCATGTTG 1 chr5:41870068-41870568 ( 79) GAGAGCCGCCATCTTC 1 chr17:32341905-32342405 ( 29) GGCCGCCGCAATGCTC 1 chr16:30698010-30698510 ( 4) GGCCGCCGCCGTCTCG 1 chr1:226061590-226062090 ( 63) CGACACAGCCATCTTG 1 chr12:123458057-12345855 ( 46) GTGGGGCGCCATGTTG 1 chrX:104156611-104157111 ( 82) GGTCGCCGCCATGACA 1 chr19:33080925-33081425 ( 65) CCGCGCCGCCATCCTG 1 chr12:62260003-62260503 ( 31) GTGCGCGGCCATGGTC 1 chr11:116772695-11677319 ( 64) CGCCGCTGCCATGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSCGCCGCCATSTTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 12.1018 E= 6.4e-001 -225 -45 113 -225 -26 -304 105 -26 -225 54 13 -26 -225 135 -104 -1134 7 -1134 135 -1134 -1134 160 -304 -1134 -67 105 -145 -67 -1134 -1134 160 -225 -1134 166 -1134 -1134 -225 160 -1134 -1134 233 -1134 -204 -1134 -1134 -1134 -1134 244 -1134 13 105 -1134 -126 -72 -204 183 -1134 -72 -1134 214 -126 -45 113 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSCGCCGCCATSTTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 26 E= 6.4e-001 0.038462 0.230769 0.692308 0.038462 0.153846 0.038462 0.653846 0.153846 0.038462 0.461538 0.346154 0.153846 0.038462 0.807692 0.153846 0.000000 0.192308 0.000000 0.807692 0.000000 0.000000 0.961538 0.038462 0.000000 0.115385 0.653846 0.115385 0.115385 0.000000 0.000000 0.961538 0.038462 0.000000 1.000000 0.000000 0.000000 0.038462 0.961538 0.000000 0.000000 0.923077 0.000000 0.076923 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.346154 0.653846 0.000000 0.076923 0.192308 0.076923 0.653846 0.000000 0.192308 0.000000 0.807692 0.076923 0.230769 0.692308 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSCGCCGCCATSTTG MEME-3 regular expression -------------------------------------------------------------------------------- [GC]G[CG]CGCCGCCAT[GC]TT[GC] -------------------------------------------------------------------------------- Time 1133.56 secs. ******************************************************************************** ******************************************************************************** MOTIF WTTATKTTTTSCRKYAWWWAAW MEME-4 width = 22 sites = 7 llr = 146 E-value = 8.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif WTTATKTTTTSCRKYAWWWAAW MEME-4 Description -------------------------------------------------------------------------------- Simplified A 6:19:11:31:34::9636776 pos.-specific C ::::::::::371141:1:::: probability G ::::161:::6:34:::::::1 matrix T 4a91937a791:146:464333 bits 2.4 * * 2.2 * * 2.0 *** * * 1.7 **** * * * Relative 1.5 ***** *** ** *** Entropy 1.2 ***** **** *** *** (30.1 bits) 1.0 ***** **** * ******** 0.7 ********** * ******** 0.5 ************ ********* 0.2 ********************** 0.0 ---------------------- Multilevel ATTATGTTTTGCAGTAATAAAA consensus T T A CAGTC TATTTT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTATKTTTTSCRKYAWWWAAW MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr7:100837126-100837626 + 2 4.45e-13 T ATTATTTTTTCCATTAAAAAAT GGTGGAGAGG chr9:85743206-85743706 + 40 9.35e-12 GAGTGAGTGA TTTATGTTTTGCGGTAATTAAG AACTTAGAGC chr5:175378363-175378863 + 66 1.62e-10 gttgaagcaa tttatgttttcagctcataaaa cctcttggaa chr7:135716582-135717082 - 1 1.62e-10 TGAAGGTGCT ATTATTTTTATCTTCATTTTAA chr1:16727192-16727692 - 15 3.91e-10 TAAATGCACT ATTAGGTTATGCAGTATAATTT TGCAGCGTAA chr1:85297854-85298354 + 44 1.10e-09 GTGTGTTGAC TTAATGGTATGACTCATTTAAA TGGAACGGAC chr6:82260184-82260684 - 39 1.24e-09 CTCCCTGTGG ATTTTAATTTGCAGCAACAATA AACTTCAAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTATKTTTTSCRKYAWWWAAW MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:100837126-100837626 4.4e-13 1_[+4]_77 chr9:85743206-85743706 9.4e-12 39_[+4]_39 chr5:175378363-175378863 1.6e-10 65_[+4]_13 chr7:135716582-135717082 1.6e-10 [-4]_78 chr1:16727192-16727692 3.9e-10 14_[-4]_64 chr1:85297854-85298354 1.1e-09 43_[+4]_35 chr6:82260184-82260684 1.2e-09 38_[-4]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTATKTTTTSCRKYAWWWAAW MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WTTATKTTTTSCRKYAWWWAAW width=22 seqs=7 chr7:100837126-100837626 ( 2) ATTATTTTTTCCATTAAAAAAT 1 chr9:85743206-85743706 ( 40) TTTATGTTTTGCGGTAATTAAG 1 chr5:175378363-175378863 ( 66) TTTATGTTTTCAGCTCATAAAA 1 chr7:135716582-135717082 ( 1) ATTATTTTTATCTTCATTTTAA 1 chr1:16727192-16727692 ( 15) ATTAGGTTATGCAGTATAATTT 1 chr1:85297854-85298354 ( 44) TTAATGGTATGACTCATTTAAA 1 chr6:82260184-82260684 ( 39) ATTTTAATTTGCAGCAACAATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTATKTTTTSCRKYAWWWAAW MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 11.7043 E= 8.3e+000 164 -945 -945 122 -945 -945 -945 244 -36 -945 -945 222 222 -945 -945 -36 -945 -945 -114 222 -36 -945 85 64 -36 -945 -114 196 -945 -945 -945 244 64 -945 -945 196 -36 -945 -945 222 -945 -15 85 -36 64 117 -945 -945 122 -114 -15 -36 -945 -114 44 122 -945 44 -945 164 222 -114 -945 -945 164 -945 -945 122 64 -114 -945 164 164 -945 -945 122 196 -945 -945 64 196 -945 -945 64 164 -945 -114 64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTATKTTTTSCRKYAWWWAAW MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 7 E= 8.3e+000 0.571429 0.000000 0.000000 0.428571 0.000000 0.000000 0.000000 1.000000 0.142857 0.000000 0.000000 0.857143 0.857143 0.000000 0.000000 0.142857 0.000000 0.000000 0.142857 0.857143 0.142857 0.000000 0.571429 0.285714 0.142857 0.000000 0.142857 0.714286 0.000000 0.000000 0.000000 1.000000 0.285714 0.000000 0.000000 0.714286 0.142857 0.000000 0.000000 0.857143 0.000000 0.285714 0.571429 0.142857 0.285714 0.714286 0.000000 0.000000 0.428571 0.142857 0.285714 0.142857 0.000000 0.142857 0.428571 0.428571 0.000000 0.428571 0.000000 0.571429 0.857143 0.142857 0.000000 0.000000 0.571429 0.000000 0.000000 0.428571 0.285714 0.142857 0.000000 0.571429 0.571429 0.000000 0.000000 0.428571 0.714286 0.000000 0.000000 0.285714 0.714286 0.000000 0.000000 0.285714 0.571429 0.000000 0.142857 0.285714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTATKTTTTSCRKYAWWWAAW MEME-4 regular expression -------------------------------------------------------------------------------- [AT]TTAT[GT]TT[TA]T[GC][CA][AG][GT][TC]A[AT][TA][AT][AT][AT][AT] -------------------------------------------------------------------------------- Time 1478.18 secs. ******************************************************************************** ******************************************************************************** MOTIF WTTAYHBSNKTRDDYYAYNKCNHSTSACMTHKYWWGGYYTHTNNTDNCH MEME-5 width = 49 sites = 13 llr = 288 E-value = 1.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif WTTAYHBSNKTRDDYYAYNKCNHSTSACMTHKYWWGGYYTHTNNTDNCH MEME-5 Description -------------------------------------------------------------------------------- Simplified A 511525112:1542228:32:23:226:41322232:122223324214 pos.-specific C :2:25324322::234153:823425:8424152:1:4314:231:293 probability G 11::::5423233211112513:5122:12:41217a1::1:32:43:: matrix T 4692322235623454:4232241522225343561:5583822723:3 bits 2.4 2.2 2.0 * 1.7 * * * Relative 1.5 * * * * * Entropy 1.2 * * * * * * * * * (32.0 bits) 1.0 * * * ** * * * * * * 0.7 **** * **** ** * * ** * * ** * * ** 0.5 ****** **** * ** ** *** ** ** ******* * ** ** 0.2 ******* ************* *** **************** *** ** 0.0 ------------------------------------------------- Multilevel ATTACAGCCTTAATTCACAGCGTGTCACATCGCTTGGTTTCTAATAGCA consensus TC CTCCGTG GGACT TCT AACAGG CCATTAA CC T GCAGT C sequence T TT A TG T CC T A CT TC T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTAYHBSNKTRDDYYAYNKCNHSTSACMTHKYWWGGYYTHTNNTDNCH MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------------- chr19:1021389-1021889 + 34 2.17e-16 agcgttccat atttttGCTGTAGTCTACAGCTCGTCACCTCGTTTGGCTTCTCTTGCCC GGATCCTGCC chr5:181218311-181218811 - 17 2.68e-13 AAGTGCTGGG ATTACAGGCGTGAACCACCGCGCCCGGCCTTGTTTTGCTTTTAATTGCT GGAAGTGACT chr15:67792424-67792924 + 31 3.76e-13 CCCTGCAGTC ATTCCAAGATTATGTCATTGGATGTCATCCCTAATGGTATTAAAAATCA AGATGAAGTT chr19:44259537-44260037 + 32 4.27e-12 aagtgctggg attacaggcgtgagccactgcacctggccCCTCTTGGTCCCTCTTGGCT GGGCAGGGCG chr1:81126925-81127425 - 48 1.80e-11 ACTT TCTAATCCTTTTTTTGACAGCTTGGCACATCTCCAGGTTAGTGCAATCC TGTTAATTGC chr1:233112915-233113415 + 22 3.40e-11 CAGCTTGTCA TCACCAGGGTAGATTTACAGCTAGAAGCAGATTGTGGTTTATTCTTCCT GGTTTTGCAA chr1:85708017-85708517 + 48 6.27e-11 CTTCCCTTCA TTTTCAGCAGCAAACTCCATCAACTCACGATCCTTGGCCTCTGCTGCCA CTCT chr15:66886266-66886766 + 1 8.82e-11 . ATTATCCTTTTATCACATTTCCAGACTCATTTATGAGGCTCATGTTTCT CCCCGAGGGC chr6:27684364-27684864 + 5 8.82e-11 TCCC GCTTCTCGCCTAATGTACCTCCTGTTTTCTAGCAAGGCTTTTAAAAGCC TGAGTATTAC chr10:87845945-87846445 - 40 1.71e-10 GAGGAAAAGG ATTCCCTCATTATCTAGTCTTGCGTGACATAATGACGTTTCTGTCAACA ACAGCCCGCA chr10:75379134-75379634 + 15 3.49e-10 CGATGTTGAT TTTATCTCCCGAGATTAGCATGATTTACTTCGGATGGATAATAATGTCA TTTGCTTGAT chr1:212035154-212035654 - 51 4.08e-10 G AGTAACTATTCGGGTCATGGCGTCAAACTCAACTAAGTCTTTCCTGGCA GATGCCGGCT chr7:135716582-135717082 + 46 6.17e-09 aggattaagt tatatagtgtgtgtaaatgacctcccacagtgcctggcatatggtaaac actTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTAYHBSNKTRDDYYAYNKCNHSTSACMTHKYWWGGYYTHTNNTDNCH MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:1021389-1021889 2.2e-16 33_[+5]_18 chr5:181218311-181218811 2.7e-13 16_[-5]_35 chr15:67792424-67792924 3.8e-13 30_[+5]_21 chr19:44259537-44260037 4.3e-12 31_[+5]_20 chr1:81126925-81127425 1.8e-11 47_[-5]_4 chr1:233112915-233113415 3.4e-11 21_[+5]_30 chr1:85708017-85708517 6.3e-11 47_[+5]_4 chr15:66886266-66886766 8.8e-11 [+5]_51 chr6:27684364-27684864 8.8e-11 4_[+5]_47 chr10:87845945-87846445 1.7e-10 39_[-5]_12 chr10:75379134-75379634 3.5e-10 14_[+5]_37 chr1:212035154-212035654 4.1e-10 50_[-5]_1 chr7:135716582-135717082 6.2e-09 45_[+5]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTAYHBSNKTRDDYYAYNKCNHSTSACMTHKYWWGGYYTHTNNTDNCH MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WTTAYHBSNKTRDDYYAYNKCNHSTSACMTHKYWWGGYYTHTNNTDNCH width=49 seqs=13 chr19:1021389-1021889 ( 34) ATTTTTGCTGTAGTCTACAGCTCGTCACCTCGTTTGGCTTCTCTTGCCC 1 chr5:181218311-181218811 ( 17) ATTACAGGCGTGAACCACCGCGCCCGGCCTTGTTTTGCTTTTAATTGCT 1 chr15:67792424-67792924 ( 31) ATTCCAAGATTATGTCATTGGATGTCATCCCTAATGGTATTAAAAATCA 1 chr19:44259537-44260037 ( 32) ATTACAGGCGTGAGCCACTGCACCTGGCCCCTCTTGGTCCCTCTTGGCT 1 chr1:81126925-81127425 ( 48) TCTAATCCTTTTTTTGACAGCTTGGCACATCTCCAGGTTAGTGCAATCC 1 chr1:233112915-233113415 ( 22) TCACCAGGGTAGATTTACAGCTAGAAGCAGATTGTGGTTTATTCTTCCT 1 chr1:85708017-85708517 ( 48) TTTTCAGCAGCAAACTCCATCAACTCACGATCCTTGGCCTCTGCTGCCA 1 chr15:66886266-66886766 ( 1) ATTATCCTTTTATCACATTTCCAGACTCATTTATGAGGCTCATGTTTCT 1 chr6:27684364-27684864 ( 5) GCTTCTCGCCTAATGTACCTCCTGTTTTCTAGCAAGGCTTTTAAAAGCC 1 chr10:87845945-87846445 ( 40) ATTCCCTCATTATCTAGTCTTGCGTGACATAATGACGTTTCTGTCAACA 1 chr10:75379134-75379634 ( 15) TTTATCTCCCGAGATTAGCATGATTTACTTCGGATGGATAATAATGTCA 1 chr1:212035154-212035654 ( 51) AGTAACTATTCGGGTCATGGCGTCAAACTCAACTAAGTCTTTCCTGGCA 1 chr7:135716582-135717082 ( 46) TATATAGTGTGTGTAAATGACCTCCCACAGTGCCTGGCATATGGTAAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTAYHBSNKTRDDYYAYNKCNHSTSACMTHKYWWGGYYTHTNNTDNCH MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 49 n= 31200 bayes= 12.3929 E= 1.1e+004 155 -1035 -204 107 -125 -45 -204 174 -125 -1035 -1035 233 155 -45 -1035 33 -26 77 -1035 74 133 -4 -1035 33 -125 -45 54 33 -125 28 28 -26 33 -4 -104 74 -1035 -104 -4 155 -125 -104 -104 174 155 -1035 -4 -26 107 -1035 -4 74 33 -104 -45 107 -26 -4 -204 133 -26 28 -204 107 220 -204 -204 -1035 -1035 77 -204 107 74 -4 -104 33 -26 -1035 77 74 -1035 128 -204 -26 33 -45 -4 33 74 -4 -1035 107 -1035 28 77 -125 33 -104 -204 155 -26 54 -45 -26 174 -1035 -45 -26 -1035 142 -1035 -26 107 28 -204 -26 -125 -45 -104 155 74 28 -1035 74 -26 -204 28 107 -26 54 -204 74 33 -104 -104 133 74 -1035 -204 174 -26 -204 113 -125 -1035 -1035 166 -1035 -125 28 -204 133 -26 -4 -1035 155 -26 -204 -1035 207 33 28 -204 74 -26 -1035 -1035 220 74 -45 -4 -26 74 -4 -104 33 33 -204 -1035 191 107 -1035 28 33 -26 -45 -4 74 -125 154 -1035 -1035 107 -4 -1035 74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTAYHBSNKTRDDYYAYNKCNHSTSACMTHKYWWGGYYTHTNNTDNCH MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 49 nsites= 13 E= 1.1e+004 0.538462 0.000000 0.076923 0.384615 0.076923 0.230769 0.076923 0.615385 0.076923 0.000000 0.000000 0.923077 0.538462 0.230769 0.000000 0.230769 0.153846 0.538462 0.000000 0.307692 0.461538 0.307692 0.000000 0.230769 0.076923 0.230769 0.461538 0.230769 0.076923 0.384615 0.384615 0.153846 0.230769 0.307692 0.153846 0.307692 0.000000 0.153846 0.307692 0.538462 0.076923 0.153846 0.153846 0.615385 0.538462 0.000000 0.307692 0.153846 0.384615 0.000000 0.307692 0.307692 0.230769 0.153846 0.230769 0.384615 0.153846 0.307692 0.076923 0.461538 0.153846 0.384615 0.076923 0.384615 0.846154 0.076923 0.076923 0.000000 0.000000 0.538462 0.076923 0.384615 0.307692 0.307692 0.153846 0.230769 0.153846 0.000000 0.538462 0.307692 0.000000 0.769231 0.076923 0.153846 0.230769 0.230769 0.307692 0.230769 0.307692 0.307692 0.000000 0.384615 0.000000 0.384615 0.538462 0.076923 0.230769 0.153846 0.076923 0.538462 0.153846 0.461538 0.230769 0.153846 0.615385 0.000000 0.230769 0.153846 0.000000 0.846154 0.000000 0.153846 0.384615 0.384615 0.076923 0.153846 0.076923 0.230769 0.153846 0.538462 0.307692 0.384615 0.000000 0.307692 0.153846 0.076923 0.384615 0.384615 0.153846 0.461538 0.076923 0.307692 0.230769 0.153846 0.153846 0.461538 0.307692 0.000000 0.076923 0.615385 0.153846 0.076923 0.692308 0.076923 0.000000 0.000000 1.000000 0.000000 0.076923 0.384615 0.076923 0.461538 0.153846 0.307692 0.000000 0.538462 0.153846 0.076923 0.000000 0.769231 0.230769 0.384615 0.076923 0.307692 0.153846 0.000000 0.000000 0.846154 0.307692 0.230769 0.307692 0.153846 0.307692 0.307692 0.153846 0.230769 0.230769 0.076923 0.000000 0.692308 0.384615 0.000000 0.384615 0.230769 0.153846 0.230769 0.307692 0.307692 0.076923 0.923077 0.000000 0.000000 0.384615 0.307692 0.000000 0.307692 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTAYHBSNKTRDDYYAYNKCNHSTSACMTHKYWWGGYYTHTNNTDNCH MEME-5 regular expression -------------------------------------------------------------------------------- [AT][TC]T[ACT][CT][ACT][GCT][CG][CTA][TG]T[AG][AGT][TAG][TC][CT]A[CT][ACT][GT]C[GACT][TAC][GC][TA][CG][AG]C[AC][TC][CAT][GT][CT][TA][TA]GG[TC][TC]T[CTA]T[AGC][ACT][TA][AGT][GTC]C[ACT] -------------------------------------------------------------------------------- Time 1818.96 secs. ******************************************************************************** ******************************************************************************** MOTIF ATGTTATCSCGCARMACYTTKCGRTGACGCTTRGCWCCTCCCTTACCCAA MEME-6 width = 50 sites = 2 llr = 130 E-value = 2.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATGTTATCSCGCARMACYTTKCGRTGACGCTTRGCWCCTCCCTTACCCAA MEME-6 Description -------------------------------------------------------------------------------- Simplified A a::::a::::::a55a:::::::5::a:::::5::5::::::::a:::aa pos.-specific C :::::::a5a:a::5:a5:::a:::::a:a::::a:aa:aaa:::aaa:: probability G ::a:::::5:a::5::::::5:a5:a::a:::5a:::::::::::::::: matrix T :a:aa:a::::::::::5aa5:::a:::::aa:::5::a:::aa:::::: bits 2.4 ** **** * * ** * * ** * *** ** 2.2 ** **** * * ** * * ** * *** ** 2.0 ** **** * * ** * * ** * *** ** 1.7 ******** **** ** ** ** ******** ** ************** Relative 1.5 ******** **** ** ** ** ******** ***************** Entropy 1.2 ******** **** ** ** ** ******** ***************** (93.8 bits) 1.0 ******** ***************************************** 0.7 ************************************************** 0.5 ************************************************** 0.2 ************************************************** 0.0 -------------------------------------------------- Multilevel ATGTTATCCCGCAAAACCTTGCGATGACGCTTAGCACCTCCCTTACCCAA consensus G GC T T G G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGTTATCSCGCARMACYTTKCGRTGACGCTTRGCWCCTCCCTTACCCAA MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------------------------------- chr6:26285201-26285701 + 19 9.76e-30 GATGCCCTGG ATGTTATCGCGCAAAACCTTGCGATGACGCTTAGCTCCTCCCTTACCCAA ACCTTTTCCA chr6:26026926-26027426 + 47 5.05e-29 GATGCCTTGG ATGTTATCCCGCAGCACTTTTCGGTGACGCTTGGCACCTCCCTTACCCAA ACCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGTTATCSCGCARMACYTTKCGRTGACGCTTRGCWCCTCCCTTACCCAA MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:26285201-26285701 9.8e-30 18_[+6]_32 chr6:26026926-26027426 5.1e-29 46_[+6]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGTTATCSCGCARMACYTTKCGRTGACGCTTRGCWCCTCCCTTACCCAA MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATGTTATCSCGCARMACYTTKCGRTGACGCTTRGCWCCTCCCTTACCCAA width=50 seqs=2 chr6:26285201-26285701 ( 19) ATGTTATCGCGCAAAACCTTGCGATGACGCTTAGCTCCTCCCTTACCCAA 1 chr6:26026926-26027426 ( 47) ATGTTATCCCGCAGCACTTTTCGGTGACGCTTGGCACCTCCCTTACCCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGTTATCSCGCARMACYTTKCGRTGACGCTTRGCWCCTCCCTTACCCAA MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 50 n= 30600 bayes= 13.9011 E= 2.4e+004 244 -765 -765 -765 -765 -765 -765 244 -765 -765 166 -765 -765 -765 -765 244 -765 -765 -765 244 244 -765 -765 -765 -765 -765 -765 244 -765 166 -765 -765 -765 66 66 -765 -765 166 -765 -765 -765 -765 166 -765 -765 166 -765 -765 244 -765 -765 -765 144 -765 66 -765 144 66 -765 -765 244 -765 -765 -765 -765 166 -765 -765 -765 66 -765 144 -765 -765 -765 244 -765 -765 -765 244 -765 -765 66 144 -765 166 -765 -765 -765 -765 166 -765 144 -765 66 -765 -765 -765 -765 244 -765 -765 166 -765 244 -765 -765 -765 -765 166 -765 -765 -765 -765 166 -765 -765 166 -765 -765 -765 -765 -765 244 -765 -765 -765 244 144 -765 66 -765 -765 -765 166 -765 -765 166 -765 -765 144 -765 -765 144 -765 166 -765 -765 -765 166 -765 -765 -765 -765 -765 244 -765 166 -765 -765 -765 166 -765 -765 -765 166 -765 -765 -765 -765 -765 244 -765 -765 -765 244 244 -765 -765 -765 -765 166 -765 -765 -765 166 -765 -765 -765 166 -765 -765 244 -765 -765 -765 244 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGTTATCSCGCARMACYTTKCGRTGACGCTTRGCWCCTCCCTTACCCAA MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 50 nsites= 2 E= 2.4e+004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGTTATCSCGCARMACYTTKCGRTGACGCTTRGCWCCTCCCTTACCCAA MEME-6 regular expression -------------------------------------------------------------------------------- ATGTTATC[CG]CGCA[AG][AC]AC[CT]TT[GT]CG[AG]TGACGCTT[AG]GC[AT]CCTCCCTTACCCAA -------------------------------------------------------------------------------- Time 2154.79 secs. ******************************************************************************** ******************************************************************************** MOTIF YTTWTYYAMTYCTTYCSABWY MEME-7 width = 21 sites = 10 llr = 173 E-value = 2.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTTWTYYAMTYCTTYCSABWY MEME-7 Description -------------------------------------------------------------------------------- Simplified A :1131::86::11::1:8:41 pos.-specific C 52:2:45:3147::596:4:6 probability G ::2:::::::12:1::3:4:: matrix T 57759652195:995:12263 bits 2.4 2.2 2.0 * * ** 1.7 * * * ** * Relative 1.5 * * * ** * * Entropy 1.2 ** ** * * ** * * * (24.9 bits) 1.0 *** ****** **** * * 0.7 *********** **** * ** 0.5 ****************** ** 0.2 ********************* 0.0 --------------------- Multilevel CTTTTTCAATTCTTCCCACTC consensus TCGA CTTC CG T GTGAT sequence C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTWTYYAMTYCTTYCSABWY MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr4:77862561-77863061 + 23 3.34e-12 GAACGGAACC TTTTTTTAATTCTTCCCAGTA GAAACGTAGG chr6:79078192-79078692 + 63 1.28e-10 GGGCGTGCGA TTTATTTATTTATTTCCAGTC GGAGAAGATG chr6:27388706-27389206 + 34 1.18e-09 CGCATGGGTT TCTCTTTAATCCTTCCGACTT CCCCAAGCCC chr6:110815507-110816007 - 77 1.44e-09 GTG CTGATTTAATGCTTTCCATAC TCTCTGCGTG chr4:70688113-70688613 + 43 3.79e-09 ACGGAACTTC CTTATCCTATCGTTTCCACAC GGAAAGATTT chr7:129054735-129055235 + 56 1.56e-08 TTTTTTCCGG TTTTTCCACTTGATTCTAGAC TCTTGAGTCC chr1:213987975-213988475 + 15 1.80e-08 ctcttctttt cttctcctcttcttccctctc ctcgcctctc chr6:132813981-132814481 - 23 2.09e-08 CGCCGAGCGC CAGTTTTAACCCTTTCCACAC CACGTTCTAC chr14:22982595-22983095 - 11 2.60e-08 ACACTCTTTC CTATTCCAATTCTTCAGTGTT GTAGGGGCAG chr1:183471792-183472292 - 67 1.37e-07 TCTTCCCCCT TCTTATCACTCCTGCCGATTT CCCTCTTCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTWTYYAMTYCTTYCSABWY MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:77862561-77863061 3.3e-12 22_[+7]_57 chr6:79078192-79078692 1.3e-10 62_[+7]_17 chr6:27388706-27389206 1.2e-09 33_[+7]_46 chr6:110815507-110816007 1.4e-09 76_[-7]_3 chr4:70688113-70688613 3.8e-09 42_[+7]_37 chr7:129054735-129055235 1.6e-08 55_[+7]_24 chr1:213987975-213988475 1.8e-08 14_[+7]_65 chr6:132813981-132814481 2.1e-08 22_[-7]_57 chr14:22982595-22983095 2.6e-08 10_[-7]_69 chr1:183471792-183472292 1.4e-07 66_[-7]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTWTYYAMTYCTTYCSABWY MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTTWTYYAMTYCTTYCSABWY width=21 seqs=10 chr4:77862561-77863061 ( 23) TTTTTTTAATTCTTCCCAGTA 1 chr6:79078192-79078692 ( 63) TTTATTTATTTATTTCCAGTC 1 chr6:27388706-27389206 ( 34) TCTCTTTAATCCTTCCGACTT 1 chr6:110815507-110816007 ( 77) CTGATTTAATGCTTTCCATAC 1 chr4:70688113-70688613 ( 43) CTTATCCTATCGTTTCCACAC 1 chr7:129054735-129055235 ( 56) TTTTTCCACTTGATTCTAGAC 1 chr1:213987975-213988475 ( 15) CTTCTCCTCTTCTTCCCTCTC 1 chr6:132813981-132814481 ( 23) CAGTTTTAACCCTTTCCACAC 1 chr14:22982595-22983095 ( 11) CTATTCCAATTCTTCAGTGTT 1 chr1:183471792-183472292 ( 67) TCTTATCACTCCTGCCGATTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTWTYYAMTYCTTYCSABWY MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 48000 bayes= 13.7026 E= 2.6e+002 -997 66 -997 144 -88 -66 -997 193 -88 -997 -66 193 71 -66 -997 144 -88 -997 -997 229 -997 34 -997 171 -997 66 -997 144 212 -997 -997 12 171 -8 -997 -88 -997 -166 -997 229 -997 34 -166 144 -88 115 -66 -997 -88 -997 -997 229 -997 -997 -166 229 -997 66 -997 144 -88 151 -997 -997 -997 92 -8 -88 212 -997 -997 12 -997 34 34 12 112 -997 -997 171 -88 92 -997 71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTWTYYAMTYCTTYCSABWY MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 10 E= 2.6e+002 0.000000 0.500000 0.000000 0.500000 0.100000 0.200000 0.000000 0.700000 0.100000 0.000000 0.200000 0.700000 0.300000 0.200000 0.000000 0.500000 0.100000 0.000000 0.000000 0.900000 0.000000 0.400000 0.000000 0.600000 0.000000 0.500000 0.000000 0.500000 0.800000 0.000000 0.000000 0.200000 0.600000 0.300000 0.000000 0.100000 0.000000 0.100000 0.000000 0.900000 0.000000 0.400000 0.100000 0.500000 0.100000 0.700000 0.200000 0.000000 0.100000 0.000000 0.000000 0.900000 0.000000 0.000000 0.100000 0.900000 0.000000 0.500000 0.000000 0.500000 0.100000 0.900000 0.000000 0.000000 0.000000 0.600000 0.300000 0.100000 0.800000 0.000000 0.000000 0.200000 0.000000 0.400000 0.400000 0.200000 0.400000 0.000000 0.000000 0.600000 0.100000 0.600000 0.000000 0.300000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTWTYYAMTYCTTYCSABWY MEME-7 regular expression -------------------------------------------------------------------------------- [CT][TC][TG][TAC]T[TC][CT][AT][AC]T[TC][CG]TT[CT]C[CG][AT][CGT][TA][CT] -------------------------------------------------------------------------------- Time 2491.01 secs. ******************************************************************************** ******************************************************************************** MOTIF GAKTCVGMGCGWYKGTGWMTKKCSGTTTCCG MEME-8 width = 31 sites = 3 llr = 105 E-value = 1.2e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAKTCVGMGCGWYKGTGWMTKKCSGTTTCCG MEME-8 Description -------------------------------------------------------------------------------- Simplified A :a:::3:3:::7:::::77:::::::::::: pos.-specific C ::::a3:7:a::7:::::3:::a7::::aa: probability G a:7::3a:a:a::7a:a:::33:3a:::::a matrix T ::3a:::::::333:a:3:a77:::aaa::: bits 2.4 * * * * *** 2.2 * * * * *** 2.0 * * * * *** 1.7 ** ** * *** *** * * ******* Relative 1.5 ** ** * **** **** * * ******* Entropy 1.2 ** ** * **** ********* ******* (50.6 bits) 1.0 ***** ***************** ******* 0.7 ***** ************************* 0.5 ***** ************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel GAGTCAGCGCGACGGTGAATTTCCGTTTCCG consensus T C A TTT TC GG G sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAKTCVGMGCGWYKGTGWMTKKCSGTTTCCG MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr10:42782510-42783010 + 49 9.11e-19 TCCCTCCGGC GAGTCAGCGCGACTGTGAATTTCCGTTTCCG GCGGTGTCCA chr10:73730274-73730774 - 26 2.62e-18 TCCCTCCGGA GAGTCGGCGCGACGGTGAATTTCCGTTTCCG GTGGTGTCCA chr7:100335933-100336433 + 19 1.24e-15 GCCTGGCGTG GATTCCGAGCGTTGGTGTCTGGCGGTTTCCG ACCGTTGGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAKTCVGMGCGWYKGTGWMTKKCSGTTTCCG MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:42782510-42783010 9.1e-19 48_[+8]_21 chr10:73730274-73730774 2.6e-18 25_[-8]_44 chr7:100335933-100336433 1.2e-15 18_[+8]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAKTCVGMGCGWYKGTGWMTKKCSGTTTCCG MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAKTCVGMGCGWYKGTGWMTKKCSGTTTCCG width=31 seqs=3 chr10:42782510-42783010 ( 49) GAGTCAGCGCGACTGTGAATTTCCGTTTCCG 1 chr10:73730274-73730774 ( 26) GAGTCGGCGCGACGGTGAATTTCCGTTTCCG 1 chr7:100335933-100336433 ( 19) GATTCCGAGCGTTGGTGTCTGGCGGTTTCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAKTCVGMGCGWYKGTGWMTKKCSGTTTCCG MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 42000 bayes= 13.432 E= 1.2e+005 -823 -823 166 -823 244 -823 -823 -823 -823 -823 107 86 -823 -823 -823 244 -823 166 -823 -823 86 8 8 -823 -823 -823 166 -823 86 107 -823 -823 -823 -823 166 -823 -823 166 -823 -823 -823 -823 166 -823 186 -823 -823 86 -823 107 -823 86 -823 -823 107 86 -823 -823 166 -823 -823 -823 -823 244 -823 -823 166 -823 186 -823 -823 86 186 8 -823 -823 -823 -823 -823 244 -823 -823 8 186 -823 -823 8 186 -823 166 -823 -823 -823 107 8 -823 -823 -823 166 -823 -823 -823 -823 244 -823 -823 -823 244 -823 -823 -823 244 -823 166 -823 -823 -823 166 -823 -823 -823 -823 166 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAKTCVGMGCGWYKGTGWMTKKCSGTTTCCG MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 3 E= 1.2e+005 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.333333 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.000000 0.000000 0.333333 0.666667 0.333333 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.333333 0.666667 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAKTCVGMGCGWYKGTGWMTKKCSGTTTCCG MEME-8 regular expression -------------------------------------------------------------------------------- GA[GT]TC[ACG]G[CA]GCG[AT][CT][GT]GTG[AT][AC]T[TG][TG]C[CG]GTTTCCG -------------------------------------------------------------------------------- Time 2824.98 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTGTBGSTGYTGCTGCKGKYK MEME-9 width = 22 sites = 9 llr = 160 E-value = 3.3e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGTBGSTGYTGCTGCKGKYK MEME-9 Description -------------------------------------------------------------------------------- Simplified A 2::::12::::::::2::1::: pos.-specific C :9:::413::61:8::6::13: probability G 8118:267:a:192:8238417 matrix T ::92a21:a:481:a:271463 bits 2.4 * * * 2.2 * * * 2.0 * * * * 1.7 * * ** * Relative 1.5 * * ** * Entropy 1.2 ** * ** ** * * (25.6 bits) 1.0 ***** ******** * * 0.7 ***** ********* ***** 0.5 ***** *************** 0.2 ***** **************** 0.0 ---------------------- Multilevel GCTGTCGGTGCTGCTGCTGGTG consensus A T GAC T G AGG TCT sequence T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTBGSTGYTGCTGCKGKYK MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr1:193121811-193122311 + 54 2.10e-12 GGCGAGGACG GCTGTTAGTGCTGCTGCTGTTG GTTCGTCGCg chr6:143511296-143511796 - 76 1.29e-10 GCT GCTGTTGCTGTTGCTGCTGCTG CCGCCGCCGC chr5:134758553-134759053 + 61 1.95e-10 GGCCGCCACA GCTGTAGGTGCTGCTAGTGTTT AGCGCTGGTC chr3:183099148-183099648 - 54 2.07e-09 CGGCCTCTGC GGTGTCGGTGCTGCTGGTGGCG GCGGAGAGGA chr6:138988034-138988534 - 1 3.01e-09 CGCGGCCGCC GCTGTCACTGTTGGTGCGGGCG chr19:36489000-36489500 - 64 2.07e-08 GGCCTCGGAG ACTGTGGCTGCTGGTGTGTGTG TGAGAGGGAG chr12:56724956-56725456 - 79 2.20e-08 . ACTTTCTGTGCCGCTACTGTCT ATCCGCAGCC chr1:88891292-88891792 - 38 2.50e-08 TTCGCTTCCT GCTTTCGGTGTGTCTGTTGTGT CTTGTTGCGG chr2:159712337-159712837 + 67 3.80e-08 GAGAAAGGCG GCGGTGCGTGTTGCTGCGAGTG GGACGCGCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTBGSTGYTGCTGCKGKYK MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:193121811-193122311 2.1e-12 53_[+9]_25 chr6:143511296-143511796 1.3e-10 75_[-9]_3 chr5:134758553-134759053 1.9e-10 60_[+9]_18 chr3:183099148-183099648 2.1e-09 53_[-9]_25 chr6:138988034-138988534 3e-09 [-9]_78 chr19:36489000-36489500 2.1e-08 63_[-9]_15 chr12:56724956-56725456 2.2e-08 78_[-9] chr1:88891292-88891792 2.5e-08 37_[-9]_41 chr2:159712337-159712837 3.8e-08 66_[+9]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTBGSTGYTGCTGCKGKYK MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGTBGSTGYTGCTGCKGKYK width=22 seqs=9 chr1:193121811-193122311 ( 54) GCTGTTAGTGCTGCTGCTGTTG 1 chr6:143511296-143511796 ( 76) GCTGTTGCTGTTGCTGCTGCTG 1 chr5:134758553-134759053 ( 61) GCTGTAGGTGCTGCTAGTGTTT 1 chr3:183099148-183099648 ( 54) GGTGTCGGTGCTGCTGGTGGCG 1 chr6:138988034-138988534 ( 1) GCTGTCACTGTTGGTGCGGGCG 1 chr19:36489000-36489500 ( 64) ACTGTGGCTGCTGGTGTGTGTG 1 chr12:56724956-56725456 ( 79) ACTTTCTGTGCCGCTACTGTCT 1 chr1:88891292-88891792 ( 38) GCTTTCGGTGTGTCTGTTGTGT 1 chr2:159712337-159712837 ( 67) GCGGTGCGTGTTGCTGCGAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTBGSTGYTGCTGCKGKYK MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 13.2105 E= 3.3e+005 27 -982 130 -982 -982 149 -151 -982 -982 -982 -151 227 -982 -982 130 27 -982 -982 -982 244 -72 49 -51 27 27 -151 81 -72 -982 8 107 -982 -982 -982 -982 244 -982 -982 166 -982 -982 81 -982 127 -982 -151 -151 208 -982 -982 149 -72 -982 130 -51 -982 -982 -982 -982 244 27 -982 130 -982 -982 81 -51 27 -982 -982 8 186 -72 -982 130 -72 -982 -151 49 127 -982 8 -151 160 -982 -982 107 86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTBGSTGYTGCTGCKGKYK MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 9 E= 3.3e+005 0.222222 0.000000 0.777778 0.000000 0.000000 0.888889 0.111111 0.000000 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 0.777778 0.222222 0.000000 0.000000 0.000000 1.000000 0.111111 0.444444 0.222222 0.222222 0.222222 0.111111 0.555556 0.111111 0.000000 0.333333 0.666667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.555556 0.000000 0.444444 0.000000 0.111111 0.111111 0.777778 0.000000 0.000000 0.888889 0.111111 0.000000 0.777778 0.222222 0.000000 0.000000 0.000000 0.000000 1.000000 0.222222 0.000000 0.777778 0.000000 0.000000 0.555556 0.222222 0.222222 0.000000 0.000000 0.333333 0.666667 0.111111 0.000000 0.777778 0.111111 0.000000 0.111111 0.444444 0.444444 0.000000 0.333333 0.111111 0.555556 0.000000 0.000000 0.666667 0.333333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTBGSTGYTGCTGCKGKYK MEME-9 regular expression -------------------------------------------------------------------------------- [GA]CT[GT]T[CGT][GA][GC]TG[CT]TG[CG]T[GA][CGT][TG]G[GT][TC][GT] -------------------------------------------------------------------------------- Time 3157.15 secs. ******************************************************************************** ******************************************************************************** MOTIF SYYYCCGCWSCTCCCCBCCYSC MEME-10 width = 22 sites = 32 llr = 382 E-value = 1.1e+006 ******************************************************************************** -------------------------------------------------------------------------------- Motif SYYYCCGCWSCTCCCCBCCYSC MEME-10 Description -------------------------------------------------------------------------------- Simplified A :::1::::5:::::::1:211: pos.-specific C 665588:927a:6968387459 probability G 3::11:7::3:1212132:231 matrix T 1443213:3::931213:131: bits 2.4 2.2 2.0 1.7 ** Relative 1.5 ** Entropy 1.2 * ** * (17.2 bits) 1.0 ** *** ** * * 0.7 ** **** *** * * ** * 0.5 *** ************ ** * 0.2 ********************** 0.0 ---------------------- Multilevel CCCCCCGCACCTCCCCCCCCCC consensus GTTT T TG T G T ATG sequence C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYYYCCGCWSCTCCCCBCCYSC MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr11:57741144-57741644 + 25 3.44e-09 CCGTCAGGCG CTTCCCGCACCTTCCCGCTCCC TGCTTGCAAA chr12:113185234-11318573 - 78 4.20e-09 G GTCACCGCACCTCCCCCCCCCC CACGCAGTTG chr1:224615755-224616255 + 48 7.37e-09 CACACCATAC CCTTCCGCAGCTTCCCACCTCC TCCAGACGCA chr19:35154681-35155181 + 7 4.24e-08 TTGACC CCTTCCGCTCCTCTCCGCCCCC CATCCACGCC chr15:75023461-75023961 - 10 4.24e-08 GCGGACACAG CTCCCCGAACCTCCCCTCCCGC GCCGCCGCG chr5:73216004-73216504 - 14 1.97e-07 TGCGCCACAG CTCCTCTCTCCTGCCCCCATGC GGCCATAGGG chr9:132944458-132944958 + 21 2.48e-07 AAAAGAGTCC CCCTCCGGACCTCCCCTCCTTC TCGAAAGGAA chr10:27998261-27998761 - 13 3.87e-07 CCGCCGCTTC CCTGCCTCTCCTTCCCCCAGCC CGTCTTTCTC chr1:26432180-26432680 - 43 3.87e-07 TCCCTTTGCT TCTCCCGCAGCTGCTCCCCGCC CAGTCACCCT chr10:68406597-68407097 + 61 3.87e-07 AACCTGAAAA GTCATCGCCCCTCCCCGCCTGC TCCCCGACCC chr12:38906470-38906970 + 59 4.31e-07 GGGACCTTTG TTCCCCGCGCCTTCCCTCCTGC CTCACCCGAG chr18:50281154-50281654 + 70 4.79e-07 GGCGAGGGTC cctcctgcacctcccgcctcgc cctcctccc chr1:228486602-228487102 - 28 6.54e-07 GCCTGCGTGG GCCTCCTCCGCTGCTCTCATCC TGCACGGACC chr12:49060539-49061039 - 40 7.99e-07 AGGGCGGGAT CCCTCCGCCGCTCCGCTCCAAC ACAAAATAGG chr15:66497626-66498126 - 75 9.73e-07 ACCC CTTCCTGCAGCTCGTCCCCCGC GGAGTGGCCA chr1:109483990-109484490 + 44 1.30e-06 GTGCCCGCCC GCTCCGTCACCTTCGCGCCTCC GGGTCCTAGC chr1:235128524-235129024 - 27 1.56e-06 GGGTTCGTGG CCCACCGCTCCTTCGCGGTCCC TGCCGCCACC chr11:66001999-66002499 - 53 1.56e-06 GAGAGGACTT CCTTTCTCTGCTGCCCGGACCC GGAACTCAAG chr11:47578712-47579212 + 11 1.71e-06 TGCCTGTCTC GCTTTCTCACCTGCGTTCCCTC CTTTCATCCC chr19:39125628-39126128 - 9 1.71e-06 CGCCCTCGCG CCTCCCTCAGCTCTCTTGCACC GCCACCAC chr6:143450453-143450953 - 34 1.87e-06 GCGTTCCGCT GCCCGCGCTCCTCCTCTGCCGC GGGCTCTGTA chr12:45728635-45729135 + 30 2.04e-06 TAGTGGCCGT TTCCCCGCACCGCCCCCCTTTC CGCCGGCTTT chr17:45148320-45148820 - 12 2.23e-06 CCTCCTCCCC CTTCCCACAGCTCCTCTTCCGC GTCCTCCCCC chr18:36067178-36067678 - 59 2.44e-06 GGCGGCGAAA CTCTCCTCCCCTCGGCCCCACC GCGTGGGACG chr1:155017241-155017741 + 4 2.66e-06 CTT GTTCCCGCCGCTCCCTCCCCGG GGCCAGAGGG chr1:27321970-27322470 - 26 3.72e-06 GAGCAGAGAA CTCCCTTCCGCTTCCGCCATGC GGCGCGCGCC chr1:220046229-220046729 + 71 4.38e-06 CGCCGCCGCA GCCTTCGCTCCGCCCCTGCGCC GCAGCTAC chr5:141968969-141969469 - 54 7.00e-06 GAGAGCTATC CCCACCGTACCTTCCGGCCGCC CGGCAGTGCC chr14:28768005-28768505 + 16 7.00e-06 CGCCCTTCCT GTCCCTGCACCACCCCCGCGCC AGCAGCACTT chr6:79078192-79078692 + 34 8.76e-06 AGTGAGACCC CCACCCGCTCCTCCCCGCAGGG CGTGCGATTT chr12:28190332-28190832 - 63 8.76e-06 GCTCTCCGCT GCCGCCGCTGCGCCGCTCACCC ACGCTGCCCG chr6:24774932-24775432 - 6 3.33e-05 AGGCTGTGCG CCTTGCGCCCCTGCGTACCCAC TTCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYYYCCGCWSCTCCCCBCCYSC MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:57741144-57741644 3.4e-09 24_[+10]_54 chr12:113185234-11318573 4.2e-09 77_[-10]_1 chr1:224615755-224616255 7.4e-09 47_[+10]_31 chr19:35154681-35155181 4.2e-08 6_[+10]_72 chr15:75023461-75023961 4.2e-08 9_[-10]_69 chr5:73216004-73216504 2e-07 13_[-10]_65 chr9:132944458-132944958 2.5e-07 20_[+10]_58 chr10:27998261-27998761 3.9e-07 12_[-10]_66 chr1:26432180-26432680 3.9e-07 42_[-10]_36 chr10:68406597-68407097 3.9e-07 60_[+10]_18 chr12:38906470-38906970 4.3e-07 58_[+10]_20 chr18:50281154-50281654 4.8e-07 69_[+10]_9 chr1:228486602-228487102 6.5e-07 27_[-10]_51 chr12:49060539-49061039 8e-07 39_[-10]_39 chr15:66497626-66498126 9.7e-07 74_[-10]_4 chr1:109483990-109484490 1.3e-06 43_[+10]_35 chr1:235128524-235129024 1.6e-06 26_[-10]_52 chr11:66001999-66002499 1.6e-06 52_[-10]_26 chr11:47578712-47579212 1.7e-06 10_[+10]_68 chr19:39125628-39126128 1.7e-06 8_[-10]_70 chr6:143450453-143450953 1.9e-06 33_[-10]_45 chr12:45728635-45729135 2e-06 29_[+10]_49 chr17:45148320-45148820 2.2e-06 11_[-10]_67 chr18:36067178-36067678 2.4e-06 58_[-10]_20 chr1:155017241-155017741 2.7e-06 3_[+10]_75 chr1:27321970-27322470 3.7e-06 25_[-10]_53 chr1:220046229-220046729 4.4e-06 70_[+10]_8 chr5:141968969-141969469 7e-06 53_[-10]_25 chr14:28768005-28768505 7e-06 15_[+10]_63 chr6:79078192-79078692 8.8e-06 33_[+10]_45 chr12:28190332-28190832 8.8e-06 62_[-10]_16 chr6:24774932-24775432 3.3e-05 5_[-10]_73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYYYCCGCWSCTCCCCBCCYSC MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SYYYCCGCWSCTCCCCBCCYSC width=22 seqs=32 chr11:57741144-57741644 ( 25) CTTCCCGCACCTTCCCGCTCCC 1 chr12:113185234-11318573 ( 78) GTCACCGCACCTCCCCCCCCCC 1 chr1:224615755-224616255 ( 48) CCTTCCGCAGCTTCCCACCTCC 1 chr19:35154681-35155181 ( 7) CCTTCCGCTCCTCTCCGCCCCC 1 chr15:75023461-75023961 ( 10) CTCCCCGAACCTCCCCTCCCGC 1 chr5:73216004-73216504 ( 14) CTCCTCTCTCCTGCCCCCATGC 1 chr9:132944458-132944958 ( 21) CCCTCCGGACCTCCCCTCCTTC 1 chr10:27998261-27998761 ( 13) CCTGCCTCTCCTTCCCCCAGCC 1 chr1:26432180-26432680 ( 43) TCTCCCGCAGCTGCTCCCCGCC 1 chr10:68406597-68407097 ( 61) GTCATCGCCCCTCCCCGCCTGC 1 chr12:38906470-38906970 ( 59) TTCCCCGCGCCTTCCCTCCTGC 1 chr18:50281154-50281654 ( 70) CCTCCTGCACCTCCCGCCTCGC 1 chr1:228486602-228487102 ( 28) GCCTCCTCCGCTGCTCTCATCC 1 chr12:49060539-49061039 ( 40) CCCTCCGCCGCTCCGCTCCAAC 1 chr15:66497626-66498126 ( 75) CTTCCTGCAGCTCGTCCCCCGC 1 chr1:109483990-109484490 ( 44) GCTCCGTCACCTTCGCGCCTCC 1 chr1:235128524-235129024 ( 27) CCCACCGCTCCTTCGCGGTCCC 1 chr11:66001999-66002499 ( 53) CCTTTCTCTGCTGCCCGGACCC 1 chr11:47578712-47579212 ( 11) GCTTTCTCACCTGCGTTCCCTC 1 chr19:39125628-39126128 ( 9) CCTCCCTCAGCTCTCTTGCACC 1 chr6:143450453-143450953 ( 34) GCCCGCGCTCCTCCTCTGCCGC 1 chr12:45728635-45729135 ( 30) TTCCCCGCACCGCCCCCCTTTC 1 chr17:45148320-45148820 ( 12) CTTCCCACAGCTCCTCTTCCGC 1 chr18:36067178-36067678 ( 59) CTCTCCTCCCCTCGGCCCCACC 1 chr1:155017241-155017741 ( 4) GTTCCCGCCGCTCCCTCCCCGG 1 chr1:27321970-27322470 ( 26) CTCCCTTCCGCTTCCGCCATGC 1 chr1:220046229-220046729 ( 71) GCCTTCGCTCCGCCCCTGCGCC 1 chr5:141968969-141969469 ( 54) CCCACCGTACCTTCCGGCCGCC 1 chr14:28768005-28768505 ( 16) GTCCCTGCACCACCCCCGCGCC 1 chr6:79078192-79078692 ( 34) CCACCCGCTCCTCCCCGCAGGG 1 chr12:28190332-28190832 ( 63) GCCGCCGCTGCGCCGCTCACCC 1 chr6:24774932-24775432 ( 6) CCTTGCGCCCCTGCGTACCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYYYCCGCWSCTCCCCBCCYSC MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 10.5316 E= 1.1e+006 -1164 91 -2 -97 -1164 91 -1164 114 -255 75 -1164 125 -56 66 -234 77 -1164 130 -234 -23 -1164 142 -334 -56 -255 -1164 112 61 -255 152 -334 -255 135 -53 -334 61 -1164 105 12 -1164 -1164 166 -1164 -1164 -255 -1164 -175 225 -1164 83 -75 44 -1164 147 -234 -155 -1164 98 -53 -23 -1164 130 -175 -56 -155 12 -34 90 -1164 130 -75 -255 25 105 -1164 -56 -97 47 -75 61 -155 66 12 -97 -1164 157 -234 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYYYCCGCWSCTCCCCBCCYSC MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 32 E= 1.1e+006 0.000000 0.593750 0.312500 0.093750 0.000000 0.593750 0.000000 0.406250 0.031250 0.531250 0.000000 0.437500 0.125000 0.500000 0.062500 0.312500 0.000000 0.781250 0.062500 0.156250 0.000000 0.843750 0.031250 0.125000 0.031250 0.000000 0.687500 0.281250 0.031250 0.906250 0.031250 0.031250 0.468750 0.218750 0.031250 0.281250 0.000000 0.656250 0.343750 0.000000 0.000000 1.000000 0.000000 0.000000 0.031250 0.000000 0.093750 0.875000 0.000000 0.562500 0.187500 0.250000 0.000000 0.875000 0.062500 0.062500 0.000000 0.625000 0.218750 0.156250 0.000000 0.781250 0.093750 0.125000 0.062500 0.343750 0.250000 0.343750 0.000000 0.781250 0.187500 0.031250 0.218750 0.656250 0.000000 0.125000 0.093750 0.437500 0.187500 0.281250 0.062500 0.500000 0.343750 0.093750 0.000000 0.937500 0.062500 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYYYCCGCWSCTCCCCBCCYSC MEME-10 regular expression -------------------------------------------------------------------------------- [CG][CT][CT][CT]CC[GT]C[ATC][CG]CT[CT]C[CG]C[CTG]C[CA][CT][CG]C -------------------------------------------------------------------------------- Time 3469.20 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:46700640-46701140 6.97e-01 100 chr12:109998958-10999945 4.73e-01 100 chr18:48873509-48874009 1.66e-18 31_[-1(3.54e-16)]_21 chr1:228458265-228458765 8.92e-01 100 chr18:46104259-46104759 7.54e-03 70_[-2(3.23e-06)]_8 chr1:234373304-234373804 3.66e-01 100 chr2:96638202-96638702 2.05e-01 61_[+2(6.40e-05)]_17 chr13:102845671-10284617 3.11e-02 9_[+8(4.03e-06)]_60 chr4:101347640-101348140 5.06e-01 100 chr5:154754585-154755085 4.91e-01 100 chr17:30477275-30477775 2.84e-02 100 chr7:92590137-92590637 3.68e-01 100 chr6:37796218-37796718 7.90e-02 48_[+4(2.83e-05)]_30 chr12:45728635-45729135 7.45e-03 29_[+10(2.04e-06)]_5_[+9(8.66e-05)]_\ 22 chr1:36464077-36464577 3.42e-02 68_[+3(5.03e-08)]_16 chr12:120446338-12044683 4.92e-01 100 chr12:10613328-10613828 4.66e-01 100 chr12:53299622-53300122 5.18e-01 100 chr6:27157862-27158362 3.31e-01 100 chr1:223992486-223992986 9.26e-01 100 chr9:19048948-19049448 2.55e-02 57_[-9(2.78e-06)]_21 chr19:29605858-29606358 4.86e-01 100 chr1:200669431-200669931 2.90e-01 100 chr1:229558926-229559426 2.02e-01 26_[-10(3.33e-05)]_52 chr1:244652283-244652783 8.23e-02 19_[-2(8.82e-05)]_59 chr5:40835178-40835678 2.77e-01 100 chr7:141072518-141073018 6.32e-01 9_[+10(2.95e-05)]_69 chr1:232678496-232678996 4.04e-02 35_[-4(3.14e-05)]_43 chr6:27684364-27684864 3.76e-06 4_[+5(8.82e-11)]_13_[-4(3.22e-05)]_\ 12 chr22:37686088-37686588 6.37e-01 100 chr17:77958145-77958645 4.09e-01 100 chr10:74176545-74177045 7.97e-01 100 chr12:109052309-10905280 2.83e-01 100 chr10:102644680-10264518 9.12e-01 100 chr13:96053063-96053563 4.06e-01 100 chr13:37000449-37000949 2.51e-01 100 chr15:75903745-75904245 1.50e-02 23_[-10(6.26e-05)]_55 chr17:75784961-75785461 8.93e-01 100 chr1:228082159-228082659 1.29e-01 100 chrX:54044002-54044502 3.55e-02 100 chr7:100126994-100127494 1.72e-01 100 chr7:151085853-151086353 5.74e-01 100 chr13:41061366-41061866 9.74e-01 100 chr18:36067178-36067678 4.26e-02 58_[-10(2.44e-06)]_20 chr14:90396803-90397303 7.07e-01 100 chr7:99465811-99466311 1.32e-01 58_[-2(4.98e-05)]_20 chr15:84570876-84571376 7.21e-01 100 chr8:89984183-89984683 8.38e-02 100 chr10:94362771-94363271 6.71e-01 100 chr13:110713116-11071361 6.90e-01 100 chr1:173714790-173715290 3.20e-04 19_[-10(4.04e-06)]_14_\ [-7(2.83e-05)]_24 chr1:85297854-85298354 2.92e-06 43_[+4(1.10e-09)]_35 chr1:212035154-212035654 5.84e-05 50_[-5(4.08e-10)]_1 chr5:163459718-163460218 7.18e-01 100 chr12:76348044-76348544 7.11e-03 20_[+6(3.52e-05)]_30 chr5:74766956-74767456 1.75e-02 100 chr6:7389385-7389885 1.31e-02 100 chr14:20469336-20469836 5.89e-01 100 chr19:42075377-42075877 3.93e-03 3_[-2(3.23e-06)]_75 chr1:84620668-84621168 2.75e-02 9_[-1(7.86e-06)]_43 chrX:47658832-47659332 2.83e-02 100 chr6:87155264-87155764 2.07e-01 100 chr1:214439430-214439930 3.35e-01 100 chr12:55973997-55974497 5.27e-01 100 chr17:7583707-7584207 6.06e-01 100 chr15:72783552-72784052 4.10e-01 100 chr1:109484194-109484694 1.51e-02 49_[-2(2.86e-06)]_29 chr10:119892292-11989279 9.05e-01 100 chr1:23867898-23868398 2.86e-01 100 chr5:73216004-73216504 9.23e-04 13_[-10(1.97e-07)]_18_\ [+2(1.36e-05)]_25 chr10:17201373-17201873 5.51e-01 100 chr10:97318821-97319321 8.69e-01 100 chrX:53422119-53422619 9.91e-01 100 chr19:37217816-37218316 2.02e-01 100 chr7:100428631-100429131 2.65e-02 100 chr18:48952448-48952948 8.99e-01 100 chr19:44212484-44212984 1.90e-02 42_[-6(5.94e-05)]_8 chr12:30754964-30755464 6.28e-01 100 chr2:165953820-165954320 2.78e-04 29_[-7(5.23e-06)]_3_[+2(1.50e-05)]_\ 25 chr9:111630908-111631408 3.55e-01 100 chr15:66886266-66886766 1.24e-05 [+5(8.82e-11)]_51 chr18:35497695-35498195 2.39e-02 34_[-2(2.67e-05)]_44 chr6:11093645-11094145 5.43e-01 6_[+8(8.70e-05)]_63 chr4:139295407-139295907 3.82e-01 100 chr1:16545742-16546242 7.85e-01 100 chr19:38831525-38832025 2.02e-01 35_[+3(5.37e-05)]_49 chr10:73413703-73414203 5.91e-02 70_[+2(5.89e-05)]_8 chr5:140718597-140719097 2.39e-02 53_[+4(9.57e-05)]_25 chr2:55268991-55269491 2.54e-01 56_[-2(7.52e-05)]_22 chr19:34926850-34927350 7.82e-01 100 chr5:112160543-112161043 5.15e-01 100 chr2:201071638-201072138 2.19e-01 43_[+5(8.13e-05)]_8 chr1:12478072-12478572 7.61e-03 26_[+4(5.27e-05)]_11_[+2(4.98e-05)]_\ 19 chr7:100837126-100837626 5.98e-10 1_[+4(4.45e-13)]_16_[-9(5.95e-05)]_\ 8_[-9(5.32e-06)]_9 chr12:31749140-31749640 1.57e-03 31_[+7(8.11e-05)]_48 chr10:103917720-10391822 6.51e-01 100 chr17:63621499-63621999 4.16e-01 100 chr7:105532069-105532569 5.36e-01 100 chr1:226061590-226062090 2.25e-01 62_[+3(2.89e-06)]_22 chr11:47248604-47249104 2.91e-03 31_[+1(7.03e-05)]_4_[+3(4.55e-07)]_\ 1 chr11:83285990-83286490 8.82e-01 100 chr14:28768005-28768505 4.81e-02 15_[+10(7.00e-06)]_63 chr19:35612570-35613070 4.21e-01 100 chr12:6470328-6470828 8.96e-04 11_[-6(3.38e-05)]_39 chr1:88891292-88891792 1.43e-05 37_[-9(2.50e-08)]_41 chr19:34677039-34677539 5.48e-01 100 chr6:138988034-138988534 5.86e-06 [-9(3.01e-09)]_36_[+2(5.73e-07)]_20 chr12:118135933-11813643 4.16e-01 100 chr1:201435681-201436181 1.17e-23 20_[-1(2.07e-21)]_9_[+2(3.12e-07)]_\ 1 chr1:28581564-28582064 2.49e-01 100 chr1:110407425-110407925 1.34e-01 19_[-9(1.36e-05)]_59 chr1:1406985-1407485 1.21e-02 26_[-3(9.76e-05)]_36_[+3(1.66e-07)]_\ 6 chr15:68559659-68560159 3.51e-02 12_[-1(3.83e-05)]_40 chr12:48105860-48106360 2.84e-01 100 chr15:74223468-74223968 2.37e-18 52_[+1(3.67e-25)] chr6:132813981-132814481 1.79e-03 22_[-7(2.09e-08)]_57 chr14:55051607-55052107 4.12e-01 15_[+2(4.98e-05)]_63 chr12:69359693-69360193 7.50e-01 100 chr9:121074773-121075273 2.92e-01 45_[-2(8.15e-05)]_33 chr1:99849946-99850446 5.67e-01 100 chr10:68406597-68407097 1.22e-04 2_[+6(2.19e-05)]_8_[+10(3.87e-07)]_\ 18 chr5:181218311-181218811 8.46e-06 16_[-5(2.68e-13)]_35 chr11:112961122-11296162 5.19e-04 3_[-2(1.52e-06)]_75 chr1:26432180-26432680 2.77e-04 10_[+2(1.66e-05)]_10_\ [-10(3.87e-07)]_36 chr16:2267722-2268222 5.30e-01 100 chr12:38906470-38906970 6.77e-03 58_[+10(4.31e-07)]_20 chr1:161530881-161531381 4.50e-02 1_[-4(4.46e-06)]_77 chr19:33521491-33521991 2.48e-03 57_[+3(9.46e-09)]_27 chr19:47483926-47484426 2.38e-02 100 chr19:1021389-1021889 7.55e-12 33_[+5(2.17e-16)]_18 chr1:16644712-16645212 5.23e-01 100 chr18:33578964-33579464 2.40e-02 26_[-1(3.58e-05)]_26 chr6:27146996-27147496 4.25e-01 100 chr6:143511296-143511796 5.53e-05 75_[-9(1.29e-10)]_3 chr5:121961486-121961986 1.31e-24 13_[+1(4.28e-30)]_39 chr5:43105601-43106101 2.85e-01 100 chr1:108746545-108747045 2.27e-02 55_[+2(8.06e-06)]_3_[+3(9.06e-05)]_\ 4 chr6:78867461-78867961 2.05e-01 100 chr1:233112915-233113415 3.54e-05 21_[+5(3.40e-11)]_30 chr19:40750089-40750589 2.21e-02 55_[+2(8.82e-05)]_23 chr18:58781638-58782138 1.97e-06 10_[+9(6.12e-05)]_4_[-1(2.54e-10)]_\ 16 chr5:137754408-137754908 9.81e-04 65_[-2(1.97e-06)]_13 chr19:46850326-46850826 3.73e-01 100 chr19:33176857-33177357 3.98e-01 100 chr1:236281656-236282156 9.80e-01 100 chr19:35510041-35510541 6.90e-01 100 chr19:29715284-29715784 6.78e-01 100 chr2:177263405-177263905 6.34e-01 100 chr18:70205523-70206023 4.59e-01 100 chr6:116571050-116571550 9.79e-01 100 chr17:32350058-32350558 6.57e-03 41_[+2(1.36e-05)]_37 chr17:7484173-7484673 3.26e-02 14_[+2(3.21e-05)]_64 chr19:38264455-38264955 4.36e-01 100 chr1:231422396-231422896 4.37e-01 100 chr1:182391308-182391808 7.58e-01 100 chr5:32174235-32174735 7.64e-03 4_[-2(6.94e-05)]_49_[-2(4.61e-06)]_\ 3 chr19:36666633-36667133 3.08e-01 100 chr2:69914131-69914631 9.53e-01 100 chr16:30698010-30698510 2.39e-03 3_[-3(2.89e-06)]_20_[-10(9.51e-05)]_\ 7_[-2(8.82e-05)]_10 chr7:100335933-100336433 2.64e-10 18_[+8(1.24e-15)]_51 chr5:10307383-10307883 2.65e-01 100 chr10:46030215-46030715 5.91e-01 100 chr7:158829617-158830117 7.88e-01 100 chr1:148264860-148265360 6.53e-02 36_[-5(6.77e-05)]_15 chr18:59358757-59359257 2.90e-03 16_[+2(5.57e-08)]_17_\ [+10(4.74e-05)]_23 chr3:15601823-15602323 5.66e-06 3_[+9(3.39e-05)]_50_[+4(3.09e-06)]_\ 3 chr6:28080740-28081240 7.69e-01 100 chr4:184734007-184734507 1.06e-01 100 chr1:226308675-226309175 6.76e-10 16_[+1(2.70e-12)]_36 chr5:131634864-131635364 9.82e-01 100 chr10:75111586-75112086 8.60e-02 100 chr17:58006918-58007418 1.25e-02 13_[-3(9.16e-07)]_71 chr1:54715609-54716109 2.88e-01 100 chr3:9986634-9987134 5.14e-01 100 chr7:133081693-133082193 5.00e-02 11_[+9(5.46e-05)]_67 chr22:39529150-39529650 9.43e-01 100 chr14:54396931-54397431 9.34e-01 100 chr1:93179974-93180474 5.88e-01 100 chr5:79514306-79514806 4.83e-01 100 chr7:55365910-55366410 9.52e-01 100 chr17:59209750-59210250 9.33e-03 4_[+2(1.97e-06)]_74 chr5:41870068-41870568 7.05e-03 78_[+3(2.25e-06)]_6 chrX:101348634-101349134 2.04e-01 100 chr1:109090487-109090987 4.57e-01 100 chr1:151281355-151281855 8.32e-01 100 chr11:116772695-11677319 9.16e-03 63_[-3(8.07e-06)]_21 chr19:36214222-36214722 2.31e-07 13_[-9(7.82e-05)]_13_[+1(6.41e-12)]_\ 4 chr19:44164542-44165042 2.96e-02 100 chr1:184386540-184387040 1.61e-17 27_[+1(9.77e-22)]_25 chr5:163505506-163506006 7.98e-03 73_[-10(3.33e-05)]_5 chr16:22297193-22297693 3.19e-02 42_[-3(2.63e-07)]_42 chr19:36139539-36140039 5.69e-01 100 chr4:77862561-77863061 8.05e-14 22_[+7(3.34e-12)]_40_[-3(1.14e-09)]_\ 1 chr4:151099422-151099922 8.95e-06 26_[-3(2.63e-05)]_29_[+2(3.23e-06)]_\ 7 chr1:63367534-63368034 4.22e-01 100 chr2:191020112-191020612 7.48e-01 100 chr5:134648342-134648842 6.48e-01 100 chr18:35041309-35041809 1.60e-01 100 chr12:113185234-11318573 2.63e-04 28_[+2(2.53e-06)]_27_\ [-10(4.20e-09)]_1 chr1:15526614-15527114 7.23e-03 24_[-2(5.57e-08)]_54 chr6:24402835-24403335 5.85e-01 100 chr22:20981886-20982386 7.38e-01 100 chr12:28190332-28190832 6.12e-04 13_[-1(2.13e-05)]_1_[-10(8.76e-06)]_\ 16 chr7:5513664-5514164 2.71e-01 100 chr18:49487115-49487615 7.24e-01 17_[+3(9.41e-05)]_67 chr1:85048428-85048928 4.05e-02 52_[-2(1.23e-05)]_26 chr12:123458057-12345855 1.82e-03 [-7(4.27e-05)]_24_[+3(3.95e-06)]_39 chr18:32091745-32092245 2.60e-01 100 chr17:76671171-76671671 6.49e-12 19_[-1(3.42e-14)]_33 chr10:32958316-32958816 1.95e-01 100 chr10:97334569-97335069 6.21e-01 100 chr7:139359327-139359827 7.47e-01 100 chr6:26026926-26027426 9.37e-21 46_[+6(5.05e-29)]_4 chr1:44986226-44986726 6.26e-01 100 chr1:156456773-156457273 1.49e-02 33_[-10(1.34e-05)]_45 chr17:67993893-67994393 2.47e-05 24_[+2(1.42e-09)]_11_\ [-10(3.42e-06)]_21 chr12:53006498-53006998 7.27e-03 69_[+2(2.22e-05)]_9 chr1:229626232-229626732 5.99e-01 100 chr12:38316514-38317014 3.90e-01 100 chr12:2004250-2004750 4.85e-01 100 chr13:48037601-48038101 1.05e-02 100 chr19:50476386-50476886 9.88e-01 100 chr1:26169677-26170177 9.78e-01 100 chr1:31944434-31944934 1.46e-01 100 chr17:40287816-40288316 9.15e-03 76_[+2(5.17e-06)]_2 chr17:7836757-7837257 5.70e-04 9_[-2(1.63e-07)]_69 chrX:53225009-53225509 3.69e-01 100 chr13:51584475-51584975 7.02e-01 100 chr19:39411958-39412458 6.98e-01 100 chr9:132944458-132944958 5.19e-03 20_[+10(2.48e-07)]_58 chr5:150449718-150450218 1.57e-01 75_[-3(1.11e-06)]_9 chr9:128771796-128772296 9.57e-01 100 chr1:155017241-155017741 1.93e-03 3_[+10(2.66e-06)]_35_[-2(5.73e-07)]_\ 18 chr18:21612130-21612630 2.37e-01 100 chr1:65420609-65421109 9.76e-02 35_[-2(3.51e-05)]_12_[-2(8.82e-05)]_\ 9 chr17:18781041-18781541 3.05e-01 42_[+3(1.75e-06)]_42 chr1:224356754-224357254 2.83e-01 100 chr1:9943105-9943605 9.92e-01 100 chr1:229625143-229625643 3.18e-01 100 chr10:14878230-14878730 6.42e-01 100 chr19:40831800-40832300 4.11e-04 60_[+4(7.04e-05)]_18 chr11:57741144-57741644 7.79e-04 24_[+10(3.44e-09)]_54 chr6:35468216-35468716 6.27e-01 100 chr6:36874559-36875059 9.00e-02 100 chr1:148334583-148335083 1.14e-01 29_[+5(2.98e-05)]_22 chr9:97922036-97922536 9.10e-01 100 chr16:58392272-58392772 2.39e-01 100 chr1:230642209-230642709 2.72e-02 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9.22e-01 100 chr1:235128524-235129024 1.48e-02 26_[-10(1.56e-06)]_52 chr5:160008634-160009134 1.07e-20 14_[+1(2.80e-18)]_38 chr19:34134450-34134950 2.41e-01 68_[+10(2.60e-05)]_10 chr1:223846118-223846618 8.98e-01 100 chr12:123601746-12360224 1.96e-01 29_[-2(5.42e-05)]_49 chr17:40140223-40140723 5.35e-01 100 chr19:35154681-35155181 2.83e-03 6_[+10(4.24e-08)]_72 chr17:51153345-51153845 5.80e-01 100 chr10:72354688-72355188 3.85e-01 100 chr5:176388742-176389242 5.56e-04 77_[+2(6.72e-08)]_1 chr13:30617592-30618092 2.04e-01 32_[-2(9.97e-06)]_46 chr12:82358327-82358827 1.12e-01 34_[-3(6.63e-05)]_50 chr19:36837952-36838452 1.80e-02 25_[-2(1.66e-05)]_2_[+1(8.06e-06)]_\ 3 chr1:92831933-92832433 6.91e-01 100 chr9:133030731-133031231 2.20e-01 2_[-7(9.03e-05)]_77 chr1:37989836-37990336 2.61e-01 100 chr19:36572875-36573375 3.62e-07 21_[+1(6.43e-11)]_31 chr19:38374624-38375124 6.69e-01 100 chr6:42890427-42890927 9.61e-01 100 chr19:35881955-35882455 1.04e-20 10_[+1(5.91e-17)]_42 chr5:40834977-40835477 8.99e-02 100 chr1:40257838-40258338 4.30e-04 15_[-5(2.58e-06)]_14_\ [-10(5.61e-05)] chr1:16644507-16645007 5.71e-01 100 chr6:131628015-131628515 1.05e-01 100 chrX:73943998-73944498 7.57e-01 100 chr1:244970685-244971185 8.64e-01 100 chr15:65517339-65517839 7.71e-01 100 chr19:1383532-1384032 4.35e-01 100 chr1:183471792-183472292 1.17e-06 66_[-7(1.37e-07)]_13 chr1:226939558-226940058 4.37e-02 33_[+2(3.84e-05)]_45 chr19:44259537-44260037 2.61e-06 31_[+5(4.27e-12)]_20 chr12:57112008-57112508 1.31e-19 7_[+1(7.83e-24)]_9_[-4(8.24e-05)]_\ 14 chr1:163321634-163322134 5.04e-01 100 chr1:63523061-63523561 6.71e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: kadru ********************************************************************************