# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF491.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF491.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF491.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF491.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:26:29 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF491.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:26:30 PST 2017)
#        host: wotan
#        when: Mon Dec 18 16:53:23 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.239 C 0.255 G 0.261 T 0.245


MOTIF BTGCCAR DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     BTGCCAR    YTGGCAV        322        101   4.5e-042   1.4e-037
#          GTGCCAA    TTGGCAC         92          8   6.7e-021   2.1e-016
#          GTGCCAG    CTGGCAC         90         18   5.1e-014   1.6e-009
#          CTGCCAA    TTGGCAG         65         19   9.3e-008   2.9e-003
#          CTGCCAG    CTGGCAG         62         25   2.4e-005   7.8e-001
#          TTGCCAG    CTGGCAA         44         14   3.4e-005   1.1e+000
#          TTGCCAA    TTGGCAA         53         20   4.4e-005   1.4e+000

letter-probability matrix: alength= 4 w= 7 nsites= 436 E= 1.4e-037
0.000000 0.302752 0.467890 0.229358
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.511468 0.000000 0.488532 0.000000


MOTIF CYTGGC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CYTGGC     GCCARG        213         77   1.2e-020   3.8e-016
#           CTTGGC     GCCAAG        122         39   6.9e-013   2.1e-008
#           CCTGGC     GCCAGG        109         43   5.3e-009   1.7e-004

letter-probability matrix: alength= 4 w= 6 nsites= 254 E= 3.8e-016
0.000000 1.000000 0.000000 0.000000
0.000000 0.492126 0.000000 0.507874
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATAAAY DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      ATAAAY     RTTTAT         74         26   2.9e-007   9.0e-003
#           ATAAAT     ATTTAT         49         17   3.2e-005   9.9e-001
#           ATAAAC     GTTTAT         30          9   4.4e-004   1.4e+001

letter-probability matrix: alength= 4 w= 6 nsites= 81 E= 9.0e-003
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.395062 0.000000 0.604938


MOTIF GGMAGGA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GGMAGGA    TCCTKCC         67         22   3.8e-007   1.2e-002
#          GGCAGGA    TCCTGCC         40         13   9.8e-005   3.0e+000
#          GGAAGGA    TCCTTCC         28         10   2.2e-003   6.7e+001

letter-probability matrix: alength= 4 w= 7 nsites= 70 E= 1.2e-002
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.414286 0.585714 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 111.44 seconds