# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF488.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF488.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF488.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF488.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 17:42:54 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF488.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 17:42:54 PDT 2018)
#        host: kali
#        when: Thu May 10 18:56:52 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.280 C 0.218 G 0.219 T 0.283


MOTIF RTAAAY DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      RTAAAY     RTTTAY        294        116   5.4e-028   1.7e-023
#           ATAAAC     GTTTAT        111         29   3.5e-014   1.1e-009
#           ATAAAT     ATTTAT        123         45   3.8e-011   1.2e-006
#           GTAAAT     ATTTAC         85         34   4.9e-007   1.5e-002
#           GTAAAC     GTTTAC         58         24   6.6e-005   2.1e+000

letter-probability matrix: alength= 4 w= 6 nsites= 415 E= 1.7e-023
0.633735 0.000000 0.366265 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.443373 0.000000 0.556627


MOTIF ATWAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       ATWAA      TTWAT        312        195   5.1e-012   1.5e-007
#            ATAAA      TTTAT        186         95   3.3e-010   9.9e-006
#            ATTAA      TTAAT        187        126   3.9e-005   1.2e+000

letter-probability matrix: alength= 4 w= 5 nsites= 433 E= 1.5e-007
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.512702 0.000000 0.000000 0.487298
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CAGCVG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CAGCVG     CBGCTG        140         58   9.1e-011   2.6e-006
#           CAGCAG     CTGCTG         96         38   5.9e-008   1.7e-003
#           CAGCGG     CCGCTG         31         13   4.2e-003   1.2e+002
#           CAGCCG     CGGCTG         22          8   7.4e-003   2.2e+002

letter-probability matrix: alength= 4 w= 6 nsites= 165 E= 2.6e-006
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.636364 0.157576 0.206061 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GATAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       GATAA      TTATC        123         55   1.9e-008   5.5e-004
#            GATAA      TTATC        123         55   1.9e-008   5.5e-004

letter-probability matrix: alength= 4 w= 5 nsites= 135 E= 5.5e-004
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAACAS DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      AAACAS     STGTTT        133         67   2.0e-007   5.5e-003
#           AAACAC     GTGTTT         73         33   3.1e-005   8.6e-001
#           AAACAG     CTGTTT         65         37   2.5e-003   7.0e+001

letter-probability matrix: alength= 4 w= 6 nsites= 148 E= 5.5e-003
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.547297 0.452703 0.000000


MOTIF TGACTCA DREME-6

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     TGACTCA    TGAGTCA         35          5   4.7e-007   1.3e-002
#          TGACTCA    TGAGTCA         35          5   4.7e-007   1.3e-002

letter-probability matrix: alength= 4 w= 7 nsites= 40 E= 1.3e-002
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 35.90 seconds