# WARNING: this file is not sorted! # db id alt consensus E-value adj_p-value log_adj_p-value bin_location bin_width total_width sites_in_bin total_sites p_success p-value mult_tests 1 CACACACACACACACACACACA MEME-1 CACACACACACACACACACACA 1.8e-001 2.4e-004 -8.35 0.0 151 479 45 78 0.31524 9.9e-007 239 1 MAAAAYAAACA MEME-3 MAAAAYAAACA 4.5e-018 6.0e-021 -46.56 0.0 174 490 303 535 0.35510 2.5e-023 244 1 RSYHATAAA MEME-5 RSYHATAAA 5.6e-020 7.5e-023 -50.94 0.0 290 492 367 448 0.58943 3.1e-025 245 1 RKGGGTGATGTCATGDGRKDGRTGATGTSATGGGAGWKRTGATGWBRTGR MEME-6 RKGGGTGATGTCATGDGRKDGRTGATGTSATGGGAGWKRTGATGWBRTGR 2.5e0000 3.4e-003 -5.68 0.0 49 451 5 5 0.10865 1.5e-005 225 1 MYCCTGCTGKG MEME-9 MYCCTGCTGKG 4.2e-001 5.6e-004 -7.50 0.0 144 490 111 258 0.29388 2.3e-006 244 2 RTAAAY DREME-1 RTAAAY 3.2e-014 4.3e-017 -37.69 0.0 183 495 279 489 0.36970 1.7e-019 247 2 ATWAA DREME-2 ATWAA 3.5e-011 4.6e-014 -30.70 0.0 182 496 289 534 0.36694 1.9e-016 247 2 GATAA DREME-4 GATAA 1.2e-007 1.6e-010 -22.56 0.0 116 496 156 393 0.23387 6.5e-013 247 2 AAACAS DREME-5 AAACAS 4.8e-001 6.4e-004 -7.35 0.0 117 495 138 408 0.23636 2.6e-006 247 2 TGACTCA DREME-6 TGACTCA 8.1e-004 1.1e-006 -13.73 0.0 256 494 87 111 0.51822 4.4e-009 246 3 M0104_1.02 (ARID3B)_(Mus_musculus)_(DBD_0.99) AWATTAATWAN 3.1e-001 4.1e-004 -7.79 0.0 170 490 227 506 0.34694 1.7e-006 244 3 M0105_1.02 (ARID3C)_(Mus_musculus)_(DBD_0.87) NTTTDATHN 7.6e-003 1.0e-005 -11.49 0.0 82 492 140 539 0.16667 4.2e-008 245 3 M0300_1.02 (ATF2)_(Mus_musculus)_(DBD_1.00) NRTKACGTMA 1.1e0000 1.5e-003 -6.53 0.0 171 491 242 550 0.34827 5.9e-006 245 3 M0436_1.02 (ZNF35)_(Mus_musculus)_(DBD_0.96) TTRTTKDHYN 1.9e-003 2.5e-006 -12.90 0.0 173 491 262 560 0.35234 1.0e-008 245 3 M0633_1.02 DMRT2 KAATKTATWN 1.4e-001 1.9e-004 -8.57 0.0 183 491 251 527 0.37271 7.7e-007 245 3 M0718_1.02 FOXK1 DNRTMAACAH 1.8e-018 2.4e-021 -47.49 0.0 129 491 267 586 0.26273 9.7e-024 245 3 M0719_1.02 FOXG1 RTAAACAW 4.4e-015 5.9e-018 -39.67 0.0 147 493 265 545 0.29817 2.4e-020 246 3 M0728_1.02 (FOXJ1)_(Mus_musculus)_(DBD_1.00) NRTAAACAAANN 2.2e-010 2.9e-013 -28.87 0.0 163 489 284 574 0.33333 1.2e-015 244 3 M0736_1.02 (FOXK2)_(Mus_musculus)_(DBD_0.90) RTAAACAA 5.3e-010 7.1e-013 -27.97 0.0 127 493 236 578 0.25761 2.9e-015 246 3 M0737_1.02 (FOXB2)_(Mus_musculus)_(DBD_0.94) WRWGTAAAYA 4.5e-009 6.1e-012 -25.83 0.0 131 491 238 576 0.26680 2.5e-014 245 3 M0747_1.02 (FOXL2)_(Mus_musculus)_(DBD_0.70) WNNRTAAAYA 5.9e-018 7.9e-021 -46.29 0.0 173 491 321 579 0.35234 3.2e-023 245 3 M0756_1.02 (FOXN3)_(Strongylocentrotus_purpuratus)_(DBD_0.44) NNHMACANN 3.7e-009 4.9e-012 -26.04 0.0 126 492 219 540 0.25610 2.0e-014 245 3 M0890_1.02 LHX6 NYAATCAN 3.0e-001 4.1e-004 -7.81 0.0 321 493 421 567 0.65112 1.6e-006 246 3 M0892_1.02 EMX1 NYTAATKAVN 1.4e-005 1.8e-008 -17.81 0.0 153 491 241 542 0.31161 7.5e-011 245 3 M0893_1.02 ZFHX2 NNTAATTANN 3.2e-004 4.2e-007 -14.68 0.0 251 491 326 508 0.51120 1.7e-009 245 3 M0894_1.02 LBX1 TTAATTAG 1.3e-001 1.8e-004 -8.63 0.0 109 493 161 514 0.22110 7.2e-007 246 3 M0896_1.02 VENTX TTAATTAG 1.8e-007 2.4e-010 -22.16 0.0 217 493 310 521 0.44016 9.6e-013 246 3 M0897_1.02 HOXB13 DTTWAYDRBN 3.4e-022 4.5e-025 -56.07 0.0 219 491 376 558 0.44603 1.8e-027 245 3 M0900_1.02 SHOX HTAATTRV 7.9e-008 1.1e-010 -22.97 0.0 137 493 228 540 0.27789 4.3e-013 246 3 M0905_1.02 (HOXA4)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 7.1e-006 9.4e-009 -18.48 0.0 172 492 253 517 0.34959 3.8e-011 245 3 M0906_1.02 (VTN)_(Mus_musculus)_(DBD_0.79) NMTTAATTAR 1.4e-005 1.9e-008 -17.80 0.0 257 491 314 468 0.52342 7.6e-011 245 3 M0931_1.02 (LHX1)_(Mus_musculus)_(DBD_1.00) TAATTRNNN 3.0e-007 3.9e-010 -21.65 0.0 214 492 312 532 0.43496 1.6e-012 245 3 M0943_1.02 (OTP)_(Mus_musculus)_(DBD_1.00) NYTAATTR 4.2e-003 5.7e-006 -12.08 0.0 265 493 334 508 0.53753 2.3e-008 246 3 M0949_1.02 (AC012531.1)_(Mus_musculus)_(DBD_1.00) NTAATDR 3.4e-005 4.5e-008 -16.91 0.0 108 494 167 485 0.21862 1.8e-010 246 3 M0958_1.02 (LHX4)_(Mus_musculus)_(DBD_1.00) BYAATYW 3.5e-004 4.7e-007 -14.57 0.0 238 494 336 553 0.48178 1.9e-009 246 3 M0961_1.02 (BARHL1)_(Mus_musculus)_(DBD_1.00) NTAAWYGNN 1.9e-005 2.5e-008 -17.50 0.0 118 492 199 550 0.23984 1.0e-010 245 3 M0969_1.02 (LHX8)_(Mus_musculus)_(DBD_1.00) NYAATYANN 2.9e-005 3.8e-008 -17.08 0.0 318 492 436 567 0.64634 1.6e-010 245 3 M0975_1.02 (LHX5)_(Mus_musculus)_(DBD_1.00) TAATTRNNN 1.5e-007 2.0e-010 -22.34 0.0 248 492 352 536 0.50407 8.1e-013 245 3 M0999_1.02 (NKX6-1)_(Mus_musculus)_(DBD_1.00) NWTAATKRN 4.3e-010 5.7e-013 -28.19 0.0 108 492 203 553 0.21951 2.3e-015 245 3 M1007_1.02 (HOXA11)_(Mus_musculus)_(DBD_1.00) TTWAYDDNN 1.6e-010 2.2e-013 -29.16 0.0 218 492 185 270 0.44309 8.8e-016 245 3 M1012_1.02 (HOXB4)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 7.5e-006 1.0e-008 -18.42 0.0 100 492 171 527 0.20325 4.1e-011 245 3 M1025_1.02 (HOXD1)_(Mus_musculus)_(DBD_0.98) NNYVATYA 8.9e-006 1.2e-008 -18.24 0.0 179 493 237 464 0.36308 4.8e-011 246 3 M1027_1.02 (HOXA6)_(Mus_musculus)_(DBD_1.00) WTAATKRBN 1.3e-014 1.7e-017 -38.60 0.0 172 492 293 542 0.34959 7.0e-020 245 3 M1030_1.02 (NKX2-3)_(Mus_musculus)_(DBD_1.00) NVYACTTVD 6.1e-001 8.2e-004 -7.11 0.0 138 492 215 587 0.28049 3.3e-006 245 3 M1039_1.02 (ENSG00000229544)_(Mus_musculus)_(DBD_1.00) NNTAATDRN 6.2e-006 8.2e-009 -18.61 0.0 120 492 197 529 0.24390 3.4e-011 245 3 M1070_1.02 (HOXC5)_(Mus_musculus)_(DBD_1.00) NTAATKRNN 1.0e-006 1.3e-009 -20.43 0.0 100 492 173 523 0.20325 5.5e-012 245 3 M1071_1.02 (HOXD3)_(Mus_musculus)_(DBD_1.00) NTAATKRN 9.1e-007 1.2e-009 -20.53 0.0 217 493 312 530 0.44016 4.9e-012 246 3 M1073_1.02 (HOXA3)_(Mus_musculus)_(DBD_1.00) HTAATKRNN 1.2e-005 1.6e-008 -17.92 0.0 106 492 184 548 0.21545 6.7e-011 245 3 M1125_1.02 (NKX1-1)_(Mus_musculus)_(DBD_1.00) NNTAATKRNN 2.0e-007 2.7e-010 -22.04 0.0 177 491 280 551 0.36049 1.1e-012 245 3 M1157_1.02 (HOXB9)_(PBM_CONSTRUCTS)_(DBD_1.00) WTTWATKRBN 3.5e-020 4.6e-023 -51.42 0.0 217 491 361 544 0.44196 1.9e-025 245 3 M1163_1.02 (NKX6-3)_(PBM_CONSTRUCTS)_(DBD_1.00) NWTAATKRN 3.5e-010 4.7e-013 -28.39 0.0 192 492 302 541 0.39024 1.9e-015 245 3 M1581_1.02 (CIC)_(Mus_musculus)_(DBD_1.00) NNTGCTGACW 2.3e0000 3.1e-003 -5.79 0.0 201 491 287 577 0.40937 1.3e-005 245 3 M1589_1.02 (SOX30)_(Mus_musculus)_(DBD_1.00) NNDNRACAAT 1.1e0000 1.5e-003 -6.53 0.0 157 491 232 570 0.31976 5.9e-006 245 3 M1863_1.02 FOXD1 GTAAACAW 5.2e-010 6.9e-013 -28.00 0.0 131 493 228 540 0.26572 2.8e-015 246 3 M1868_1.02 GATA2 DSAGATAAGAAHYH 2.6e-005 3.4e-008 -17.19 0.0 111 487 187 537 0.22793 1.4e-010 243 3 M2267_1.02 CDX2 TTTTATKRCHB 5.3e-016 7.0e-019 -41.80 0.0 210 490 335 529 0.42857 2.9e-021 244 3 M2270_1.02 DUX4 TAAYYYAATCA 9.9e-004 1.3e-006 -13.53 0.0 124 490 182 491 0.25306 5.4e-009 244 3 M2278_1.02 FOS DVTGASTCATB 3.4e-003 4.5e-006 -12.31 0.0 164 490 227 499 0.33469 1.8e-008 244 3 M2281_1.02 FOXH1 BNSAATCCACA 1.6e-001 2.1e-004 -8.45 0.0 220 490 295 534 0.44898 8.8e-007 244 3 M2283_1.02 FOXP1 HWWADGTAAACAAAR 1.9e-005 2.5e-008 -17.50 0.0 156 486 250 553 0.32099 1.0e-010 242 3 M2287_1.02 (HOXC9)_(Mus_musculus)_(DBD_0.98) RGCMATAAATCAB 2.0e-011 2.7e-014 -31.25 0.0 198 488 309 530 0.40574 1.1e-016 243 3 M2289_1.02 JUN DDRATGATGTMAT 5.8e-003 7.8e-006 -11.76 0.0 174 488 230 481 0.35656 3.2e-008 243 3 M2292_1.02 JUND DRTGASTCATS 5.3e-002 7.1e-005 -9.55 0.0 164 490 215 483 0.33469 2.9e-007 244 3 M2385_1.02 FOXP2 RWGTAAACAVR 4.2e-011 5.7e-014 -30.50 0.0 126 490 229 548 0.25714 2.3e-016 244 3 M2387_1.02 SREBF1 RTGGGGTGAB 9.8e0000 1.3e-002 -4.33 0.0 219 491 284 536 0.44603 5.4e-005 245 3 M2388_1.02 SREBF2 RTGGGGTGAY 3.7e-002 4.9e-005 -9.91 0.0 219 491 299 537 0.44603 2.0e-007 245 3 M4452_1.02 BATF TYYYRWWATGASTCA 8.4e-001 1.1e-003 -6.79 0.0 266 486 352 549 0.54733 4.7e-006 242 3 M4526_1.02 SMARCC1 DSRVDGTGASTCAKV 7.7e0000 1.0e-002 -4.58 0.0 162 486 212 506 0.33333 4.3e-005 242 3 M4565_1.02 FOSL2 VDGGATGASTCAYH 5.1e0000 6.8e-003 -4.99 0.0 155 487 189 462 0.31828 2.8e-005 243 3 M4567_1.02 FOXA2 NMWRWGTAAACANNN 9.2e-008 1.2e-010 -22.82 0.0 128 486 231 575 0.26337 5.1e-013 242 3 M4600_1.02 GATA1 NSAGATAAGVV 1.4e-003 1.8e-006 -13.20 0.0 132 490 213 559 0.26939 7.5e-009 244 3 M4619_1.02 FOSL1 BGGTGASTCAT 2.8e-001 3.7e-004 -7.89 0.0 168 490 203 452 0.34286 1.5e-006 244 3 M4665_1.02 GATA3 VWGATARVMATCWSY 7.2e0000 9.6e-003 -4.64 0.0 60 486 87 458 0.12346 4.0e-005 242 3 M5284_1.02 ALX3 BNTAATTRGY 5.2e-005 6.9e-008 -16.49 0.0 263 491 353 528 0.53564 2.8e-010 245 3 M5287_1.02 ALX4 HTAATYNAATTAN 5.8e-006 7.7e-009 -18.68 0.0 132 488 202 497 0.27049 3.2e-011 243 3 M5291_1.02 ARX YTAATTNRATTAN 4.7e-003 6.2e-006 -11.98 0.0 154 488 202 462 0.31557 2.6e-008 243 3 M5292_1.02 ATF4 RKATGAYGCAATM 1.3e0000 1.8e-003 -6.33 0.0 154 488 182 439 0.31557 7.4e-006 243 3 M5293_1.02 ATF7 NKATGACGTCATHN 2.2e0000 2.9e-003 -5.84 0.0 293 487 180 246 0.60164 1.2e-005 243 3 M5294_1.02 BARHL2 NHTAAAYGNY 4.0e-001 5.4e-004 -7.52 0.0 39 491 76 551 0.07943 2.2e-006 245 3 M5300_1.02 BARX1 TAATBGNTWTTTAATBG 3.7e-002 4.9e-005 -9.91 0.0 130 484 170 447 0.26860 2.1e-007 241 3 M5302_1.02 BATF3 TGATGACGTCATCA 6.6e-001 8.8e-004 -7.03 0.0 261 487 101 140 0.53593 3.6e-006 243 3 M5310_1.02 BSX NTAATBRS 2.7e-004 3.5e-007 -14.85 0.0 141 493 218 535 0.28600 1.4e-009 246 3 M5339_1.02 DLX1 NNTAATTRNN 8.7e-006 1.2e-008 -18.27 0.0 109 491 186 541 0.22200 4.7e-011 245 3 M5342_1.02 DLX4 NTAATTRN 2.1e-005 2.9e-008 -17.37 0.0 137 493 224 556 0.27789 1.2e-010 246 3 M5343_1.02 DLX5 NTAATTRN 1.2e-004 1.7e-007 -15.61 0.0 109 493 187 560 0.22110 6.7e-010 246 3 M5344_1.02 DLX6 NTAATTRB 1.4e-005 1.8e-008 -17.82 0.0 251 493 356 552 0.50913 7.4e-011 246 3 M5346_1.02 DPRX SHTAATCCNN 3.5e-001 4.7e-004 -7.66 0.0 155 491 227 554 0.31568 1.9e-006 245 3 M5348_1.02 DRGX NTAATYHAATTAN 1.1e-002 1.5e-005 -11.10 0.0 132 488 181 471 0.27049 6.2e-008 243 3 M5349_1.02 DUXA NTRAYYTAATCAN 2.1e-002 2.8e-005 -10.47 0.0 158 488 222 512 0.32377 1.2e-007 243 3 M5388_1.02 EMX2 NYTAATTAVB 2.2e-006 2.9e-009 -19.64 0.0 267 491 356 517 0.54379 1.2e-011 245 3 M5390_1.02 EN1 VBTAATTRSB 4.0e-007 5.4e-010 -21.34 0.0 175 491 274 545 0.35642 2.2e-012 245 3 M5394_1.02 EN2 NNTAATTRVN 7.6e-006 1.0e-008 -18.41 0.0 179 491 271 538 0.36456 4.1e-011 245 3 M5414_1.02 ESX1 DNTAATTRRN 5.1e-010 6.9e-013 -28.01 0.0 175 491 289 557 0.35642 2.8e-015 245 3 M5427_1.02 EVX1 SNTAATYABB 4.5e-006 6.0e-009 -18.92 0.0 239 491 346 552 0.48676 2.5e-011 245 3 M5428_1.02 EVX2 NNTAATKABB 1.5e-006 2.0e-009 -20.02 0.0 243 491 350 548 0.49491 8.2e-012 245 3 M5445_1.02 FOXD2 DRTMAATATTWDYD 1.5e-001 2.0e-004 -8.53 0.0 111 487 162 501 0.22793 8.1e-007 243 3 M5446_1.02 FOXD4L2 RTAAACA 1.6e-015 2.1e-018 -40.70 0.0 172 494 310 575 0.34818 8.6e-021 246 3 M5460_1.02 FOXL1 RTAAACA 7.0e-017 9.3e-020 -43.82 0.0 176 494 315 567 0.35628 3.8e-022 246 3 M5471_1.02 FOXO6 GTAAACATGTTTAC 3.9e-002 5.1e-005 -9.88 0.0 145 487 104 225 0.29774 2.1e-007 243 3 M5480_1.02 GBX1 RBTAATTRGB 1.0e-007 1.3e-010 -22.74 0.0 179 491 267 514 0.36456 5.4e-013 245 3 M5481_1.02 GBX2 NYTAATTRSB 1.3e-008 1.7e-011 -24.79 0.0 177 491 278 537 0.36049 7.0e-014 245 3 M5500_1.02 GSC VYTAATCCBH 7.6e-001 1.0e-003 -6.89 0.0 155 491 217 530 0.31568 4.2e-006 245 3 M5501_1.02 GSC2 NYTAATCCBH 9.2e-001 1.2e-003 -6.70 0.0 161 491 230 549 0.32790 5.0e-006 245 3 M5502_1.02 GSX1 NBTAATKRSN 1.0e-004 1.3e-007 -15.83 0.0 107 491 185 559 0.21792 5.4e-010 245 3 M5503_1.02 GSX2 DYTAATKRVN 3.9e-007 5.3e-010 -21.37 0.0 177 491 278 550 0.36049 2.1e-012 245 3 M5517_1.02 HMBOX1 MYTAGTTAMS 3.1e0000 4.1e-003 -5.49 0.0 187 491 243 516 0.38086 1.7e-005 245 3 M5518_1.02 HMX1 NDTTAATTGNT 3.7e-008 4.9e-011 -23.73 0.0 170 490 273 546 0.34694 2.0e-013 244 3 M5519_1.02 HMX2 NDTTAAKTGBT 5.8e-007 7.7e-010 -20.98 0.0 80 490 156 559 0.16327 3.2e-012 244 3 M5520_1.02 HMX3 BNTTAAKTGNY 4.5e-007 6.0e-010 -21.24 0.0 124 490 218 564 0.25306 2.5e-012 244 3 M5541_1.02 HOXB2 NNTAATKANN 4.3e-005 5.7e-008 -16.68 0.0 219 491 322 557 0.44603 2.3e-010 245 3 M5542_1.02 HOXB3 NYTAATKRNN 2.1e-005 2.8e-008 -17.40 0.0 219 491 318 547 0.44603 1.1e-010 245 3 M5543_1.02 HOXB5 NHTAATKRNN 1.1e-006 1.5e-009 -20.31 0.0 107 491 194 567 0.21792 6.2e-012 245 3 M5544_1.02 HOXC10 DTTTWATKDB 1.4e-013 1.9e-016 -36.20 0.0 219 491 355 563 0.44603 7.8e-019 245 3 M5547_1.02 HOXC11 DGTCRTWAAAH 1.3e-008 1.7e-011 -24.79 0.0 124 490 213 532 0.25306 7.0e-014 244 3 M5551_1.02 HOXC12 TTTTATTRC 1.7e-010 2.2e-013 -29.13 0.0 120 492 216 540 0.24390 9.1e-016 245 3 M5553_1.02 HOXC13 CYAATAAAAH 1.7e-008 2.3e-011 -24.49 0.0 81 491 158 539 0.16497 9.5e-014 245 3 M5555_1.02 HOXD11 RTCGTAAAAH 8.1e-007 1.1e-009 -20.65 0.0 113 491 185 504 0.23014 4.4e-012 245 3 M5557_1.02 HOXD12 GTAATAAAA 8.7e-009 1.2e-011 -25.18 0.0 154 492 255 547 0.31301 4.8e-014 245 3 M5563_1.02 HOXD8 VHWAATTADV 2.4e0000 3.2e-003 -5.75 0.0 117 491 174 547 0.23829 1.3e-005 245 3 M5581_1.02 IRX2 CWTGTCRTGTWN 4.2e-003 5.6e-006 -12.09 0.0 117 489 190 555 0.23926 2.3e-008 244 3 M5582_1.02 IRX5 SWTGTYRTGTWN 4.6e-004 6.1e-007 -14.31 0.0 89 489 161 570 0.18200 2.5e-009 244 3 M5583_1.02 ISL2 YTAAKTGC 4.8e-002 6.4e-005 -9.66 0.0 137 493 213 568 0.27789 2.6e-007 246 3 M5584_1.02 ISX YTAATCTAATTAR 4.1e-002 5.5e-005 -9.80 0.0 106 488 121 363 0.21721 2.3e-007 243 3 M5587_1.02 JDP2 ATGASTCAT 4.1e-005 5.5e-008 -16.72 0.0 164 492 221 465 0.33333 2.2e-010 245 3 M5594_1.02 LBX2 CTBRANSTRATTA 2.5e0000 3.3e-003 -5.72 0.0 260 488 348 560 0.53279 1.3e-005 243 3 M5602_1.02 LHX9 YTAATTRN 1.1e-005 1.4e-008 -18.08 0.0 177 493 269 542 0.35903 5.7e-011 246 3 M5604_1.02 LMX1A YTAATTAA 8.6e-005 1.1e-007 -15.98 0.0 123 493 188 504 0.24949 4.6e-010 246 3 M5605_1.02 LMX1B TTAATTRN 2.8e-007 3.8e-010 -21.70 0.0 179 493 272 531 0.36308 1.5e-012 246 3 M5623_1.02 MEOX1 VSTAATTAHC 1.2e-005 1.6e-008 -17.98 0.0 227 491 326 543 0.46232 6.3e-011 245 3 M5624_1.02 MEOX2 DSTAATTAWN 6.4e-008 8.6e-011 -23.18 0.0 227 491 342 556 0.46232 3.5e-013 245 3 M5631_1.02 MIXL1 NBTAATTRVN 1.1e-005 1.4e-008 -18.08 0.0 177 491 270 543 0.36049 5.7e-011 245 3 M5635_1.02 MNX1 TTTAATTRNH 7.3e-011 9.8e-014 -29.96 0.0 173 491 283 542 0.35234 4.0e-016 245 3 M5637_1.02 MSX1 TAATTGSWWTTTAATTRS 1.5e-005 2.0e-008 -17.73 0.0 169 483 219 437 0.34990 8.3e-011 241 3 M5672_1.02 NOTO NBTAATTARN 1.5e-001 2.0e-004 -8.50 0.0 209 491 286 540 0.42566 8.3e-007 245 3 M5702_1.02 PAX1 DKCABTCAWGCGTGACG 1.3e-001 1.8e-004 -8.64 0.0 364 484 189 213 0.75207 7.3e-007 241 3 M5704_1.02 PAX3 TAATYRATTA 2.4e0000 3.2e-003 -5.76 0.0 183 491 164 337 0.37271 1.3e-005 245 3 M5705_1.02 PAX4 YTAATTAG 7.1e-001 9.4e-004 -6.97 0.0 231 493 278 487 0.46856 3.8e-006 246 3 M5709_1.02 PAX7 WAATYRATTA 7.4e0000 9.9e-003 -4.61 0.0 183 491 187 396 0.37271 4.1e-005 245 3 M5714_1.02 PHOX2A TAATYYAATTA 5.7e-005 7.6e-008 -16.39 0.0 132 490 197 493 0.26939 3.1e-010 244 3 M5715_1.02 PHOX2B TAATYYAATTA 3.1e-005 4.1e-008 -17.00 0.0 132 490 200 499 0.26939 1.7e-010 244 3 M5743_1.02 POU4F3 RTGMATWATTAATGAV 2.5e0000 3.3e-003 -5.70 0.0 147 485 185 469 0.30309 1.4e-005 242 3 M5746_1.02 POU6F2 WTAATKAGST 1.0e-001 1.4e-004 -8.91 0.0 207 491 280 530 0.42159 5.5e-007 245 3 M5771_1.02 RAX DYTAATTRRY 3.0e-006 4.0e-009 -19.34 0.0 179 491 266 525 0.36456 1.6e-011 245 3 M5772_1.02 RAX2 BTAATTRR 6.1e-006 8.1e-009 -18.63 0.0 137 493 224 548 0.27789 3.3e-011 246 3 M5807_1.02 SHOX2 YTAATTRR 1.4e-006 1.9e-009 -20.10 0.0 177 493 268 532 0.35903 7.6e-012 246 3 M5941_1.02 UNCX NTAATYBAATTAN 9.4e-004 1.3e-006 -13.59 0.0 110 488 178 531 0.22541 5.2e-009 243 3 M5944_1.02 VAX1 YTAATTAN 6.7e-005 8.9e-008 -16.23 0.0 219 493 314 544 0.44422 3.6e-010 246 3 M5945_1.02 VAX2 YTAATTAN 3.6e-005 4.8e-008 -16.84 0.0 219 493 315 545 0.44422 2.0e-010 246 3 M5949_1.02 VSX1 YTAATTAN 2.2e-003 3.0e-006 -12.72 0.0 179 493 250 517 0.36308 1.2e-008 246 3 M5998_1.02 (CREB5)_(Mus_musculus)_(DBD_1.00) DRTGACGTCATN 2.8e-001 3.7e-004 -7.90 0.0 153 489 137 312 0.31288 1.5e-006 244 3 M6114_1.02 FOXA1 WAWGYAAAYA 1.2e-009 1.6e-012 -27.15 0.0 165 491 279 565 0.33605 6.6e-015 245 3 M6140_1.02 AIRE HTTGGWWWWWWTGGDTWH 2.5e0000 3.4e-003 -5.69 0.0 153 483 223 554 0.31677 1.4e-005 241 3 M6141_1.02 ALX1 TAATBYAATTAB 2.4e-002 3.2e-005 -10.35 0.0 225 489 293 509 0.46012 1.3e-007 244 3 M6152_1.02 ATF1 VTGACGTCAV 6.6e0000 8.9e-003 -4.73 0.0 31 491 52 456 0.06314 3.6e-005 245 3 M6157_1.02 BARX2 TYRWTAATKR 6.7e-004 9.0e-007 -13.92 0.0 111 491 178 526 0.22607 3.7e-009 245 3 M6166_1.02 CDC5L RWTAYRTTAAMWCVC 1.1e-001 1.5e-004 -8.80 0.0 254 486 324 514 0.52263 6.2e-007 242 3 M6167_1.02 CDX1 HCATAAAD 1.5e-008 2.0e-011 -24.62 0.0 213 493 338 576 0.43205 8.2e-014 246 3 M6188_1.02 DLX2 ATAATTRB 3.5e-004 4.7e-007 -14.58 0.0 109 493 166 491 0.22110 1.9e-009 246 3 M6189_1.02 DLX3 GMTAATTRSW 8.7e-005 1.2e-007 -15.96 0.0 177 491 254 514 0.36049 4.8e-010 245 3 M6228_1.02 FOSB CTGACTCAYV 2.0e0000 2.6e-003 -5.95 0.0 165 491 243 576 0.33605 1.1e-005 245 3 M6234_1.02 FOXA3 RVWAARYAAAYAD 7.2e-009 9.6e-012 -25.37 0.0 188 488 303 558 0.38525 3.9e-014 243 3 M6235_1.02 FOXC1 CYWAAGTAAACAWHG 5.0e-014 6.7e-017 -37.24 0.0 148 486 245 492 0.30453 2.8e-019 242 3 M6236_1.02 FOXC2 YCTRDSWAAACAAAC 5.9e0000 7.9e-003 -4.84 0.0 132 486 170 476 0.27160 3.3e-005 242 3 M6237_1.02 FOXD3 AAACAAACA 2.3e-007 3.0e-010 -21.92 0.0 200 492 310 560 0.40650 1.2e-012 245 3 M6238_1.02 FOXF1 WAAATAAACAW 3.5e-020 4.6e-023 -51.43 0.0 166 490 308 555 0.33878 1.9e-025 244 3 M6239_1.02 FOXF2 HWADGTAAACA 3.1e-015 4.1e-018 -40.03 0.0 130 490 246 546 0.26531 1.7e-020 244 3 M6241_1.02 FOXJ2 WAAAYAAAYA 1.3e-013 1.7e-016 -36.30 0.0 157 491 280 560 0.31976 7.0e-019 245 3 M6242_1.02 FOXJ3 TAAACAWWAAMMA 4.4e-003 5.8e-006 -12.05 0.0 160 488 230 518 0.32787 2.4e-008 243 3 M6244_1.02 FOXM1 RWAAWCAMWCAAV 3.4e-004 4.5e-007 -14.60 0.0 108 488 192 584 0.22131 1.9e-009 243 3 M6245_1.02 FOXO1 AAAWWVWAAACAAVHH 1.2e-008 1.7e-011 -24.82 0.0 109 485 203 558 0.22474 6.9e-014 242 3 M6246_1.02 FOXO3 MKGWAAACAARYM 6.6e-013 8.9e-016 -34.66 0.0 152 488 277 570 0.31148 3.6e-018 243 3 M6247_1.02 FOXO4 MRTAAACAA 1.6e-011 2.2e-014 -31.45 0.0 122 492 231 568 0.24797 8.9e-017 245 3 M6249_1.02 FOXP3 AAWCAMATT 4.7e-002 6.2e-005 -9.69 0.0 134 492 209 565 0.27236 2.5e-007 245 3 M6250_1.02 FOXQ1 AAATAAACAATD 8.7e-007 1.2e-009 -20.57 0.0 181 489 254 486 0.37014 4.8e-012 244 3 M6256_1.02 GATA4 RSWGATAAV 2.3e-006 3.1e-009 -19.58 0.0 122 492 215 573 0.24797 1.3e-011 245 3 M6258_1.02 GATA6 NWGATAA 2.0e-005 2.7e-008 -17.42 0.0 162 494 256 559 0.32794 1.1e-010 246 3 M6281_1.02 HNF1A KGKTAAWBATTAACY 9.1e-001 1.2e-003 -6.71 0.0 222 486 264 472 0.45679 5.0e-006 242 3 M6282_1.02 HNF1B GTTAAWYATTAACY 5.0e-002 6.6e-005 -9.62 0.0 213 487 277 505 0.43737 2.7e-007 243 3 M6289_1.02 HOXA9 WCATAAAYYRTH 1.5e-007 2.0e-010 -22.34 0.0 217 489 322 541 0.44376 8.1e-013 244 3 M6290_1.02 HOXA13 CCAATAAWAHC 6.2e-010 8.3e-013 -27.81 0.0 168 490 276 544 0.34286 3.4e-015 244 3 M6292_1.02 HOXA5 CATTAATYAR 3.0e-006 4.0e-009 -19.34 0.0 235 491 327 525 0.47862 1.6e-011 245 3 M6296_1.02 HOXB6 KKCATMAATCAWT 4.9e-003 6.5e-006 -11.94 0.0 168 488 210 447 0.34426 2.7e-008 243 3 M6297_1.02 HOXB7 MATYAATCAA 6.4e-010 8.5e-013 -27.80 0.0 165 491 256 507 0.33605 3.5e-015 245 3 M6298_1.02 HOXB8 BMATTAATCAA 6.4e-008 8.5e-011 -23.19 0.0 166 490 241 484 0.33878 3.5e-013 244 3 M6299_1.02 HOXC6 AAAGTAATAAATCAT 5.3e-002 7.1e-005 -9.55 0.0 180 486 183 365 0.37037 2.9e-007 242 3 M6300_1.02 HOXC8 GSBHATYAATSAAR 1.5e-004 2.0e-007 -15.43 0.0 143 487 221 528 0.29363 8.2e-010 243 3 M6301_1.02 HOXD10 AATTAAARCA 1.8e-001 2.5e-004 -8.31 0.0 193 491 269 544 0.39308 1.0e-006 245 3 M6303_1.02 HOXD4 TTAATTKW 7.3e-002 9.8e-005 -9.23 0.0 217 493 296 542 0.44016 4.0e-007 246 3 M6304_1.02 HOXD9 HMATNAAWYT 3.7e-008 4.9e-011 -23.74 0.0 221 491 327 539 0.45010 2.0e-013 245 3 M6315_1.02 ISL1 SYTAATR 3.3e-002 4.4e-005 -10.03 0.0 130 494 192 525 0.26316 1.8e-007 246 3 M6328_1.02 LHX2 YRSDTKYAATWAG 2.0e-001 2.7e-004 -8.22 0.0 118 488 170 507 0.24180 1.1e-006 243 3 M6329_1.02 LHX3 AAAATTAATTARY 1.7e0000 2.3e-003 -6.09 0.0 84 488 113 447 0.17213 9.3e-006 243 3 M6332_1.02 MAF KTGCTGAC 8.8e0000 1.2e-002 -4.45 0.0 459 493 573 592 0.93103 4.8e-005 246 3 M6333_1.02 MAFG MATGACT 4.5e-004 6.0e-007 -14.33 0.0 232 494 345 584 0.46964 2.4e-009 246 3 M6342_1.02 MEF2D BCTAWAAATAGC 4.4e0000 5.8e-003 -5.14 0.0 135 489 168 460 0.27607 2.4e-005 244 3 M6343_1.02 MEIS1 CDTWAAVCTGTCA 3.8e-001 5.1e-004 -7.57 0.0 238 488 305 517 0.48770 2.1e-006 243 3 M6347_1.02 MSX2 TAATTNK 1.4e-002 1.9e-005 -10.87 0.0 98 494 158 538 0.19838 7.7e-008 246 3 M6357_1.02 NANOG KTTAATGG 4.6e-002 6.2e-005 -9.69 0.0 125 493 191 544 0.25355 2.5e-007 246 3 M6359_1.02 NFE2L1 NATGACD 3.2e-005 4.3e-008 -16.97 0.0 232 494 353 588 0.46964 1.7e-010 246 3 M6368_1.02 NFIL3 VKVMRTTACRTAAY 2.9e-001 3.9e-004 -7.85 0.0 139 487 158 400 0.28542 1.6e-006 243 3 M6375_1.02 NKX2-2 HAAVYACTTRAM 7.4e-001 9.9e-004 -6.92 0.0 123 489 175 512 0.25153 4.1e-006 244 3 M6376_1.02 NKX2-5 TYAAGTG 3.6e-004 4.8e-007 -14.55 0.0 152 494 250 591 0.30769 1.9e-009 246 3 M6380_1.02 NOBOX HTAATTRSY 3.5e-006 4.6e-009 -19.20 0.0 178 492 267 530 0.36179 1.9e-011 245 3 M6406_1.02 PAX2 RHTCAGTSAYGMGTGAYW 4.8e-003 6.3e-006 -11.97 0.0 243 483 331 532 0.50311 2.6e-008 241 3 M6412_1.02 PBX1 VHMATCAATCAAWTH 4.3e-003 5.8e-006 -12.06 0.0 188 486 276 550 0.38683 2.4e-008 242 3 M6413_1.02 PBX2 VMATCAATCAMWTYM 3.2e0000 4.3e-003 -5.45 0.0 196 486 280 572 0.40329 1.8e-005 242 3 M6415_1.02 PDX1 CTAATTACY 3.0e-004 4.0e-007 -14.72 0.0 240 492 313 504 0.48780 1.7e-009 245 3 M6419_1.02 PKNOX1 HATCARTCAABYB 5.2e-004 6.9e-007 -14.18 0.0 236 488 343 566 0.48361 2.8e-009 243 3 M6425_1.02 POU3F1 HTTGCATWWSMATB 3.1e-001 4.1e-004 -7.81 0.0 475 487 533 533 0.97536 1.7e-006 243 3 M6426_1.02 POU3F2 CATRAATWWT 1.7e-002 2.3e-005 -10.68 0.0 163 491 241 547 0.33198 9.4e-008 245 3 M6427_1.02 POU4F2 MARCTCATTAATR 2.5e-001 3.3e-004 -8.01 0.0 192 488 245 491 0.39344 1.4e-006 243 3 M6429_1.02 POU6F1 CATAAWTTATGCR 2.3e-001 3.0e-004 -8.11 0.0 192 488 169 322 0.39344 1.2e-006 243 3 M6440_1.02 PRRX2 YTAATTR 4.2e-005 5.7e-008 -16.69 0.0 216 494 299 521 0.43725 2.3e-010 246 3 M6471_1.02 SOX13 YATTGTTY 2.7e0000 3.6e-003 -5.63 0.0 97 493 153 565 0.19675 1.5e-005 246 3 M6477_1.02 SOX5 WAACAATR 1.1e0000 1.5e-003 -6.48 0.0 169 493 240 554 0.34280 6.2e-006 246 3 M6490_1.02 SRY DAAACAAWR 2.0e-001 2.7e-004 -8.23 0.0 148 492 224 567 0.30081 1.1e-006 245 3 M6510_1.02 TEF TGTTTATRTAAMTK 5.1e-003 6.8e-006 -11.91 0.0 197 487 285 547 0.40452 2.8e-008 243 3 M6546_1.02 ZFHX3 ATTAWTAATTA 6.8e-003 9.0e-006 -11.62 0.0 184 490 226 452 0.37551 3.7e-008 244 3 M6555_1.02 ZNF333 SKATAATGA 7.2e0000 9.6e-003 -4.65 0.0 106 492 141 479 0.21545 3.9e-005 245 ## # Detailed descriptions of columns in this file: # # db: The name of the database (file name) that contains the motif. # id: A name for the motif that is unique in the motif database file. # alt: An alternate name of the motif that may be provided # in the motif database file. # consensus: A consensus sequence computed from the motif. # E-value: The expected number motifs that would have least one. # region as enriched for best matches to the motif as the reported region. # The E-value is the p-value multiplied by the number of motifs in the # input database(s). # adj_p-value: The probability that any tested region would be as enriched for # best matches to this motif as the reported region is. # By default the p-value is calculated by using the one-tailed binomial # test on the number of sequences with a match to the motif # that have their best match in the reported region, corrected for # the number of regions and score thresholds tested. # The test assumes that the probability that the best match in a sequence # falls in the region is the region width divided by the # number of places a motif # can align in the sequence (sequence length minus motif width plus 1). # When CentriMo is run in discriminative mode with a negative # set of sequences, the p-value of a region is calculated # using the Fisher exact test on the # enrichment of best matches in the positive sequences relative # to the negative sequences, corrected # for the number of regions and score thresholds tested. # The test assumes that the probability that the best match (if any) # falls into a given region # is the same for all positive and negative sequences. # log_adj_p-value: Log of adjusted p-value. # bin_location: Location of the center of the most enriched region. # bin_width: The width (in sequence positions) of the most enriched region. # A best match to the motif is counted as being in the region if the # center of the motif falls in the region. # total_width: The window maximal size which can be reached for this motif: # rounded(sequence length - motif length +1)/2 # sites_in_bin: The number of (positive) sequences whose best match to the motif # falls in the reported region. # Note: This number may be less than the number of # (positive) sequences that have a best match in the region. # The reason for this is that a sequence may have many matches that score # equally best. # If n matches have the best score in a sequence, 1/n is added to the # appropriate bin for each match. # total_sites: The number of sequences containing a match to the motif # above the score threshold. # p_success: The probability of falling in the enriched window: # bin width / total width # p-value: The uncorrected p-value before it gets adjusted to the # number of multiple tests to give the adjusted p-value. # mult_tests: This is the number of multiple tests (n) done for this motif. # It was used to correct the original p-value of a region for # multiple tests using the formula: # p' = 1 - (1-p)^n where p is the uncorrected p-value. # The number of multiple tests is the number of regions # considered times the number of score thresholds considered. # It depends on the motif length, sequence length, and the type of # optimizations being done (central enrichment, local enrichment, # score optimization).