Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF454.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
CWGGDCC 7 CAGGGCC
ACWGGTGA 8 ACTGGTGA
TGRTAGAA 8 TGGTAGAA
AARCCAT 7 AAACCAT
AACATTTA 8 AACATTTA
AARGCAC 7 AAAGCAC
AWTACCAA 8 AATACCAA
AARAAAAG 8 AAAAAAAG
TARGTGA 7 TAGGTGA
CHGTAA 6 CTGTAA
AAWGGCTC 8 AAAGGCTC

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.274 C 0.226 G 0.226 T 0.274


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
AARAAAAG DREME-8 chr10 + 1620501 1620508 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr12 + 2810667 2810674 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr19 + 3729422 3729429 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr19 + 5482584 5482591 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr17 + 9053762 9053769 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr6 + 14465152 14465159 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr5 + 14835020 14835027 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr1 + 19027065 19027072 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr22 + 23944371 23944378 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr2 + 25861364 25861371 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr7 + 27017222 27017229 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr16 + 27525155 27525162 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr16 + 27525164 27525171 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr16 + 27525169 27525176 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr16 + 27525187 27525194 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr16 + 27525192 27525199 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr16 + 27525197 27525204 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr1 + 29236913 29236920 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr8 + 30977493 30977500 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr1 + 33106290 33106297 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr1 + 33106459 33106466 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr19 + 34822731 34822738 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr12 + 40200879 40200886 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr12 + 40201049 40201056 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr19 + 40205430 40205437 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr1 + 42602830 42602837 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr7 + 44302448 44302455 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr17 + 46964831 46964838 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr13 + 48330844 48330851 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr19 + 49320885 49320892 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr19 + 49321055 49321062 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr13 + 49997425 49997432 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr6 + 56391880 56391887 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr20 + 58934910 58934917 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr1 + 62626772 62626779 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr12 + 64164840 64164847 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr15 + 68564054 68564061 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr11 + 71243889 71243896 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr10 + 72438666 72438673 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr10 + 72762160 72762167 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr11 + 73307477 73307484 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr10 + 76694887 76694894 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr5 + 77800190 77800197 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr1 + 77979376 77979383 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr17 + 79644367 79644374 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr8 + 80017780 80017787 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr17 + 81173849 81173856 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr9 + 89857984 89857991 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr12 + 92878762 92878769 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr15 + 98379048 98379055 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr10 + 101046535 101046542 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr12 + 108683871 108683878 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr12 + 113502288 113502295 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr7 + 129031567 129031574 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr7 + 129031733 129031740 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chrX + 134579406 134579413 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr2 + 135970969 135970976 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr6 + 150425951 150425958 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr4 + 150979846 150979853 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr1 + 182465683 182465690 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr1 + 182465857 182465864 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr1 + 182465862 182465869 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr3 + 197239346 197239353 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr1 + 243822547 243822554 2.16e-05 0.104 aagaaaag
AARAAAAG DREME-8 chr6 - 1424200 1424207 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr6 - 1424281 1424288 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr19 - 1664334 1664341 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr7 - 7204210 7204217 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr19 - 10739918 10739925 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr8 - 11308488 11308495 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr3 - 11688563 11688570 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr12 - 12415787 12415794 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr12 - 12415957 12415964 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr6 - 20687522 20687529 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr1 - 21410583 21410590 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr1 - 21410755 21410762 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr6 - 21565089 21565096 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr13 - 23649206 23649213 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr16 - 28119854 28119861 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr16 - 28119863 28119870 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr22 - 36415871 36415878 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr4 - 38173499 38173506 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr10 - 48327544 48327551 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr16 - 50177433 50177440 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr12 - 50653148 50653155 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr12 - 50653340 50653347 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr20 - 51206569 51206576 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr20 - 51206574 51206581 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr20 - 51206624 51206631 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr5 - 61046271 61046278 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr5 - 61046426 61046433 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr15 - 71294029 71294036 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chrX - 71970205 71970212 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr10 - 75443818 75443825 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr6 - 84355458 84355465 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr1 - 85014661 85014668 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr10 - 92602394 92602401 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr10 - 98148998 98149005 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr14 - 104273424 104273431 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr4 - 105709074 105709081 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr7 - 114272343 114272350 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr12 - 117149168 117149175 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr5 - 119086678 119086685 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr5 - 119086834 119086841 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr10 - 121151089 121151096 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr3 - 126359375 126359382 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr9 - 128134313 128134320 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chrX - 130440463 130440470 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr9 - 131719761 131719768 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr9 - 131719872 131719879 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr2 - 206581104 206581111 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr1 - 223617212 223617219 2.16e-05 0.104 AAGAAAAG
AARAAAAG DREME-8 chr16 + 203148 203155 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr19 + 1443392 1443399 4.77e-05 0.104 aaaaaAAG
AARAAAAG DREME-8 chr18 + 3594019 3594026 4.77e-05 0.104 aaaaaaaG
AARAAAAG DREME-8 chr16 + 3843752 3843759 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr9 + 4200699 4200706 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr19 + 7817409 7817416 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr1 + 8822571 8822578 4.77e-05 0.104 aaaaaaaG
AARAAAAG DREME-8 chr19 + 10739880 10739887 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr10 + 11420483 11420490 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr18 + 13781905 13781912 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr18 + 13782087 13782094 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr3 + 17238424 17238431 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr1 + 20980181 20980188 4.77e-05 0.104 aaaaaaAG
AARAAAAG DREME-8 chr10 + 22952480 22952487 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr10 + 22952809 22952816 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr10 + 24931826 24931833 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr22 + 25442250 25442257 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr7 + 27017395 27017402 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr16 + 27525150 27525157 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr8 + 27831982 27831989 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr16 + 28119660 28119667 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr21 + 37050411 37050418 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr21 + 37248721 37248728 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr15 + 39613475 39613482 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr19 + 40360595 40360602 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr17 + 40503863 40503870 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr10 + 47553573 47553580 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr12 + 49309461 49309468 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr13 + 49997695 49997702 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr19 + 50398585 50398592 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr14 + 52459444 52459451 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr20 + 58935077 58935084 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr17 + 60088672 60088679 4.77e-05 0.104 aaaaAAAG
AARAAAAG DREME-8 chr12 + 64165145 64165152 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr17 + 64325755 64325762 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr11 + 69163746 69163753 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr15 + 71268984 71268991 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr15 + 71269143 71269150 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr12 + 71475229 71475236 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr10 + 72438921 72438928 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr10 + 72439094 72439101 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr10 + 72762235 72762242 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr17 + 73189451 73189458 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr7 + 73855457 73855464 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr7 + 73855510 73855517 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr6 + 75413792 75413799 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr7 + 75858189 75858196 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr17 + 79643996 79644003 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr5 + 82283246 82283253 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr6 + 89993416 89993423 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr6 + 89993437 89993444 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr12 + 94439562 94439569 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr12 + 94439735 94439742 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr10 + 100591099 100591106 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr7 + 106638085 106638092 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr6 + 107027824 107027831 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr10 + 108027610 108027617 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr10 + 108027840 108027847 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr5 + 112210448 112210455 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr5 + 112210491 112210498 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr12 + 113502137 113502144 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr7 + 116344738 116344745 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr6 + 118637160 118637167 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr7 + 149626400 149626407 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr4 + 150980012 150980019 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr7 + 156877277 156877284 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr6 + 165534320 165534327 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr3 + 169375700 169375707 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr3 + 169375873 169375880 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr1 + 174213059 174213066 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr5 + 178218968 178218975 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr1 + 243822801 243822808 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr1 + 243822974 243822981 4.77e-05 0.104 aaaaaaag
AARAAAAG DREME-8 chr17 - 2628536 2628543 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr17 - 2628722 2628729 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr18 - 3594301 3594308 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr6 - 4841044 4841051 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr4 - 8221444 8221451 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr17 - 8938367 8938374 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr3 - 9518762 9518769 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr1 - 12318604 12318611 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr8 - 13150233 13150240 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr19 - 18385683 18385690 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr6 - 20687514 20687521 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr6 - 21056982 21056989 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr6 - 21057154 21057161 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr20 - 21179105 21179112 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr22 - 25442299 25442306 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr4 - 26562259 26562266 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr2 - 27424678 27424685 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr6 - 28643414 28643421 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr8 - 29460106 29460113 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr6 - 31864062 31864069 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr15 - 32892692 32892699 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr6 - 34965751 34965758 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr17 - 35326794 35326801 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr22 - 36415863 36415870 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr22 - 36415876 36415883 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr22 - 36415889 36415896 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr4 - 38173754 38173761 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr13 - 43054536 43054543 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr11 - 44062371 44062378 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr21 - 44393663 44393670 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr12 - 50653327 50653334 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr12 - 50653345 50653352 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr20 - 51206579 51206586 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr20 - 51206635 51206642 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr10 - 51922284 51922291 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr14 - 54025044 54025051 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr14 - 54025193 54025200 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chrX - 54440076 54440083 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr20 - 58405741 58405748 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr2 - 62514753 62514760 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr2 - 62514920 62514927 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr9 - 68547792 68547799 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr9 - 68547806 68547813 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr17 - 71437660 71437667 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr17 - 71437678 71437685 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr11 - 75710284 75710291 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr11 - 75710449 75710456 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr7 - 75858643 75858650 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr3 - 78767251 78767258 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr6 - 85105003 85105010 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr6 - 85105177 85105184 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr15 - 85449878 85449885 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr10 - 86784635 86784642 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr7 - 93721289 93721296 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr7 - 93721392 93721399 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr10 - 96891076 96891083 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr10 - 98148832 98148839 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr14 - 102653982 102653989 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr10 - 108027950 108027957 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr13 - 113385146 113385153 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr7 - 116344820 116344827 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr10 - 121151094 121151101 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr10 - 121151108 121151115 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr9 - 121613490 121613497 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr6 - 129946051 129946058 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chrX - 130440293 130440300 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr9 - 131719552 131719559 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr9 - 131719885 131719892 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr8 - 135699724 135699731 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr7 - 135871935 135871942 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr5 - 138560890 138560897 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr8 - 144835202 144835209 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr6 - 150814703 150814710 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr4 - 151416293 151416300 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr4 - 169363726 169363733 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr3 - 182312044 182312051 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr3 - 182312217 182312224 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr1 - 223617270 223617277 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr2 - 237868045 237868052 4.77e-05 0.104 AAAAAAAG
AARAAAAG DREME-8 chr20 + 398232 398239 9.53e-05 0.169 aataaaag
AARAAAAG DREME-8 chrX + 1479901 1479908 9.53e-05 0.169 aacaaaag
AARAAAAG DREME-8 chrX + 1480004 1480011 9.53e-05 0.169 aacaaaag
AARAAAAG DREME-8 chr10 + 1620250 1620257 9.53e-05 0.169 aataaaag
AARAAAAG DREME-8 chr18 + 12566686 12566693 9.53e-05 0.169 aataaaag
AARAAAAG DREME-8 chr10 + 22952775 22952782 9.53e-05 0.169 aacaaaag
AARAAAAG DREME-8 chr20 + 24882148 24882155 9.53e-05 0.169 aacaaaag
AARAAAAG DREME-8 chr16 + 27525182 27525189 9.53e-05 0.169 aataaaag
AARAAAAG DREME-8 chr21 + 37611183 37611190 9.53e-05 0.169 aataaaag
AARAAAAG DREME-8 chr12 + 43139527 43139534 9.53e-05 0.169 aacaaaag
AARAAAAG DREME-8 chr7 + 44302052 44302059 9.53e-05 0.169 aataaaag
AARAAAAG DREME-8 chr14 + 52459614 52459621 9.53e-05 0.169 aacaaaag
AARAAAAG DREME-8 chr6 + 56392047 56392054 9.53e-05 0.169 aacaaaag
AARAAAAG DREME-8 chr20 + 57446797 57446804 9.53e-05 0.169 aataaaag
AARAAAAG DREME-8 chr20 + 58916925 58916932 9.53e-05 0.169 aataaaag
AARAAAAG DREME-8 chr15 + 68563618 68563625 9.53e-05 0.169 aacaaaag
AARAAAAG DREME-8 chr15 + 68761285 68761292 9.53e-05 0.169 aacaaaag
AARAAAAG DREME-8 chr12 + 71475328 71475335 9.53e-05 0.169 AACAAAAG
AARAAAAG DREME-8 chr10 + 76694496 76694503 9.53e-05 0.169 aataaaag
AARAAAAG DREME-8 chr10 + 76694543 76694550 9.53e-05 0.169 aacaaaag
AARAAAAG DREME-8 chr6 + 85587877 85587884 9.53e-05 0.169 aataaaag
AARAAAAG DREME-8 chr9 + 89858157 89858164 9.53e-05 0.169 aacaaaag
AARAAAAG DREME-8 chr15 + 90166071 90166078 9.53e-05 0.169 AACAAAAG
AARAAAAG DREME-8 chr7 + 99030415 99030422 9.53e-05 0.169 AACAAAAG
AARAAAAG DREME-8 chr7 + 106638177 106638184 9.53e-05 0.169 aacaaaag
AARAAAAG DREME-8 chr7 + 106638233 106638240 9.53e-05 0.169 aacaaaag
AARAAAAG DREME-8 chr12 + 108683996 108684003 9.53e-05 0.169 aacaaaag
AARAAAAG DREME-8 chr11 + 112244629 112244636 9.53e-05 0.169 aacaaaag
AARAAAAG DREME-8 chr12 + 113502230 113502237 9.53e-05 0.169 aacaaaag
AARAAAAG DREME-8 chr6 + 113883146 113883153 9.53e-05 0.169 aataaaaG
AARAAAAG DREME-8 chr10 + 114781893 114781900 9.53e-05 0.169 AACAAAAG
AARAAAAG DREME-8 chr7 + 129031351 129031358 9.53e-05 0.169 aataaaag
AARAAAAG DREME-8 chr9 + 134312345 134312352 9.53e-05 0.169 AATAAAAG
AARAAAAG DREME-8 chr2 + 152439022 152439029 9.53e-05 0.169 AATAAAAG
AARAAAAG DREME-8 chrX + 153245391 153245398 9.53e-05 0.169 AACAAAAG
AARAAAAG DREME-8 chr2 + 177619236 177619243 9.53e-05 0.169 AATAAAAG
AARAAAAG DREME-8 chr2 + 177619252 177619259 9.53e-05 0.169 AATAAAAG
AARAAAAG DREME-8 chr3 + 185138084 185138091 9.53e-05 0.169 aacaaaag
AARAAAAG DREME-8 chr4 - 8221413 8221420 9.53e-05 0.169 AATAAAAG
AARAAAAG DREME-8 chr6 - 20687495 20687502 9.53e-05 0.169 AATAAAAG
AARAAAAG DREME-8 chr6 - 21564924 21564931 9.53e-05 0.169 AATAAAAG
AARAAAAG DREME-8 chr22 - 21858673 21858680 9.53e-05 0.169 AACAAAAG
AARAAAAG DREME-8 chr14 - 30567381 30567388 9.53e-05 0.169 AACAAAAG
AARAAAAG DREME-8 chr22 - 31379425 31379432 9.53e-05 0.169 AATAAAAG
AARAAAAG DREME-8 chr1 - 36398232 36398239 9.53e-05 0.169 AATAAAAG
AARAAAAG DREME-8 chr20 - 36582373 36582380 9.53e-05 0.169 AACAAAAG
AARAAAAG DREME-8 chr14 - 54025061 54025068 9.53e-05 0.169 AATAAAAG
AARAAAAG DREME-8 chr15 - 56022250 56022257 9.53e-05 0.169 AATAAAAG
AARAAAAG DREME-8 chr16 - 57462302 57462309 9.53e-05 0.169 AACAAAAG
AARAAAAG DREME-8 chrX - 71970107 71970114 9.53e-05 0.169 AACAAAAG
AARAAAAG DREME-8 chr11 - 75710608 75710615 9.53e-05 0.169 AACAAAAG
AARAAAAG DREME-8 chr10 - 78482696 78482703 9.53e-05 0.169 AATAAAAG
AARAAAAG DREME-8 chr1 - 85014993 85015000 9.53e-05 0.169 AATAAAAG
AARAAAAG DREME-8 chr15 - 85450068 85450075 9.53e-05 0.169 AATAAAAG
AARAAAAG DREME-8 chr10 - 92602598 92602605 9.53e-05 0.169 AACAAAAG
AARAAAAG DREME-8 chr7 - 93721215 93721222 9.53e-05 0.169 AACAAAAG
AARAAAAG DREME-8 chr9 - 128134140 128134147 9.53e-05 0.169 AACAAAAG
AARAAAAG DREME-8 chr7 - 135871717 135871724 9.53e-05 0.169 AATAAAAG
AARAAAAG DREME-8 chr4 - 151416375 151416382 9.53e-05 0.169 AATAAAAG
AARAAAAG DREME-8 chr1 - 209692993 209693000 9.53e-05 0.169 AATAAAAG
AARAAAAG DREME-8 chr1 - 235505394 235505401 9.53e-05 0.169 AACAAAAG

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_12 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif AARAAAAG /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF454.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_12 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF454.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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