******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr15:101724085-10172458 1.0000 100 chr19:44255962-44256462 1.0000 100 chr17:30708649-30709149 1.0000 100 chr3:12556777-12557277 1.0000 100 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chr19:2462936-2463436 1.0000 100 chr17:27695217-27695717 1.0000 100 chr5:1950711-1951211 1.0000 100 chr8:37302606-37303106 1.0000 100 chr1:68384280-68384780 1.0000 100 chr1:232704763-232705263 1.0000 100 chr9:133030678-133031178 1.0000 100 chr17:25919962-25920462 1.0000 100 chr20:58650936-58651436 1.0000 100 chr7:129031346-129031846 1.0000 100 chr17:26885531-26886031 1.0000 100 chr9:129741133-129741633 1.0000 100 chr20:38181269-38181769 1.0000 100 chr17:9053604-9054104 1.0000 100 chr3:43059376-43059876 1.0000 100 chrX:153245074-153245574 1.0000 100 chr20:32912455-32912955 1.0000 100 chr14:104273365-10427386 1.0000 100 chr3:9518287-9518787 1.0000 100 chr13:110870205-11087070 1.0000 100 chr8:630820-631320 1.0000 100 chr10:97069959-97070459 1.0000 100 chr19:17334506-17335006 1.0000 100 chr1:93078930-93079430 1.0000 100 chr20:24881866-24882366 1.0000 100 chr17:9894586-9895086 1.0000 100 chr16:11212882-11213382 1.0000 100 chr16:88495567-88496067 1.0000 100 chr8:144456559-144457059 1.0000 100 chr10:94673535-94674035 1.0000 100 chr14:49861965-49862465 1.0000 100 chr5:174354792-174355292 1.0000 100 chr17:63842517-63843017 1.0000 100 chr15:96426990-96427490 1.0000 100 chr17:26619785-26620285 1.0000 100 chr1:80054109-80054609 1.0000 100 chr19:32373716-32374216 1.0000 100 chr2:71540993-71541493 1.0000 100 chr1:229221452-229221952 1.0000 100 chrX:73944028-73944528 1.0000 100 chr9:38097747-38098247 1.0000 100 chr19:50398502-50399002 1.0000 100 chr16:203025-203525 1.0000 100 chr12:6662876-6663376 1.0000 100 chr19:45260889-45261389 1.0000 100 chrX:1479766-1480266 1.0000 100 chr6:34965451-34965951 1.0000 100 chrUn_KI270466v1:195-695 1.0000 100 chr22:19848999-19849499 1.0000 100 chr17:40503412-40503912 1.0000 100 chr16:50177101-50177601 1.0000 100 chrUn_KI270467v1:3134-36 1.0000 100 chr3:126359250-126359750 1.0000 100 chr19:3730917-3731417 1.0000 100 chr2:109505730-109506230 1.0000 100 chr19:18250279-18250779 1.0000 100 chr1:47861402-47861902 1.0000 100 chr10:93208985-93209485 1.0000 100 chrUn_KI270467v1:2615-31 1.0000 100 chr1:236372410-236372910 1.0000 100 chr17:77233791-77234291 1.0000 100 chrUn_KI270467v1:2001-25 1.0000 100 chr19:3729060-3729560 1.0000 100 chr22:31102210-31102710 1.0000 100 chr1:236097023-236097523 1.0000 100 chr19:5482309-5482809 1.0000 100 chr1:85014547-85015047 1.0000 100 chr16:27525014-27525514 1.0000 100 chr17:78558305-78558805 1.0000 100 chr19:10604677-10605177 1.0000 100 chr17:26603652-26604152 1.0000 100 chr22:39634112-39634612 1.0000 100 chr16:22258560-22259060 1.0000 100 chr16:1271736-1272236 1.0000 100 chr1:110232853-110233353 1.0000 100 chr16:11584524-11585024 1.0000 100 chr7:99030005-99030505 1.0000 100 chr19:6746763-6747263 1.0000 100 chr19:40205235-40205735 1.0000 100 chr19:4657989-4658489 1.0000 100 chr1:125179941-125180441 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 598 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 59800 N= 598 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.240 C 0.260 G 0.260 T 0.240 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background): A 0.246 C 0.254 G 0.254 T 0.246 ******************************************************************************** ******************************************************************************** MOTIF TRAAMCCATCWGGGCCTGGW MEME-1 width = 20 sites = 88 llr = 1301 E-value = 4.4e-206 ******************************************************************************** -------------------------------------------------------------------------------- Motif TRAAMCCATCWGGGCCTGGW MEME-1 Description -------------------------------------------------------------------------------- Simplified A :6884::7:13::1::1214 pos.-specific C :11:3a8218::::aa2::: probability G 13:12::11:1a97:::792 matrix T 9:::1:21815:12::61:5 bits 2.0 1.8 * ** 1.6 * * ** 1.4 * * * ** * Relative 1.2 * ** * * ** ** * Entropy 1.0 * ** * ** ** ** * (21.3 bits) 0.8 **** ** ** ***** ** 0.6 **** ***** ********* 0.4 **** *************** 0.2 ******************** 0.0 -------------------- Multilevel TAAAACCATCTGGGCCTGGT consensus G C A A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRAAMCCATCWGGGCCTGGW MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chrX:1479766-1480266 - 49 6.44e-12 AATTCATCAG TAAACCCATCTGGGCCTGGA GCCTTTTGTT chr1:42602446-42602946 - 26 6.44e-12 AAATCACCAG TGAAACCATCTGGGCCTGGT GCTTTCTGTT chr8:28613369-28613869 + 28 6.44e-12 aattcactag tgaaaccatctgggcctggt gctttctgtt chr16:50177101-50177601 + 43 1.30e-11 aattcaccag tgaacccatctgggcctggt gccttttgct chr20:24881866-24882366 - 34 1.30e-11 AAATTGCCTG TAAAGCCATCTGGGCCTGGT GCTTTTTATT chr4:1120371-1120871 - 47 1.30e-11 AATTCACCAG TGAACCCATCTGGGCCTGGT GCTTTCTGCT chr12:108683540-10868404 - 45 1.39e-11 CACTCACCTG TAAAACCATCTGGGCCTAGT GTTTTTTGGT chr19:7817249-7817749 + 29 2.23e-11 GGTGAGCCCA TAAAACTATCTGGGCCTGGT GCCTTTCTTC chr2:8983204-8983704 - 25 2.23e-11 AATTCTCCAG TAAAACCATCTGGGCCTAGA GATGTTTTTT chr3:60703573-60704073 + 31 2.23e-11 AGTTTACATG TAAAACTATCTGGGCCTGGT GCCTTTTTTC chr3:9518287-9518787 + 34 2.69e-11 aattcaccag tgaacccatcagggcctggt gctttctctt chr1:236372410-236372910 + 60 3.33e-11 aactcaccag taaatccatctgggcctggt gctttctgtt chr3:126359250-126359750 + 32 5.08e-11 ACCTTGCCTA TAAAACCATTTGGGCctggt gcctttttgg chr14:104273365-10427386 + 70 5.08e-11 agttcaccag tgaaaccatctgggcctagt gctttctttt chr15:95851769-95852269 - 15 5.08e-11 AATTTGCCAG TAAAACCATTTGGGCCTGGT GCTTTTTCTT chr1:85014547-85015047 + 58 1.50e-10 aattcacccg taaaaccatctgggcccagt gctgttttgg chr22:23944162-23944662 - 18 1.50e-10 AATTCACCAG TAAAACCATCTGGTCCTGGG CTTTTCTTTG chr1:47861402-47861902 - 44 2.07e-10 AATTCACTAG TGAATCCATCAGGGCCTGGT GCTTTTTGTT chr8:27831648-27832148 - 42 2.07e-10 AATTCACTAG TAAAGCTATCTGGGCCTGGA GTTTTCTTAG chr1:15267313-15267813 + 53 3.29e-10 aattcaccag ggaacccatctgggcctggt gctttctgtt chr7:135871663-135872163 + 51 8.04e-10 aacttgcctg taaaaccatatgggcctggg gtcttttttt chr17:64771859-64772359 - 24 1.08e-09 TTCCCTCTCA TGAAACCCTCTGGACCTGGT GCCTTTTTCA chr7:44302021-44302521 - 60 1.08e-09 AATTCACCAA TGAACCAATCTGGGCCTGGT GCTTTCTGTT chr1:210334718-210335218 - 50 1.08e-09 GTTTCACTAG TAAAGCCATCTGGGCCTGAA AATTTTGCTA chr6:20687020-20687520 + 66 1.08e-09 cattcaccag tgaaccaatctgggcctggt gctttctgtt chr12:92878738-92879238 - 17 1.42e-09 AATTCACTAG TAAAACCATCTGGGCTTGGA GCTTTCTTTT chr19:45260889-45261389 - 26 2.44e-09 GATTTGCCTG TAAGACCATCGGGGCCCGGT GTCTTTTGCG chr15:96240919-96241419 + 57 2.44e-09 atgtcatctg taaaaccatctgggtctggt gcctttttta chr6:129945973-129946473 + 41 2.44e-09 aactcacctg taaaaccatctgggactggt gcctttctga chr6:27004086-27004586 + 72 2.44e-09 aattcaccag tgaatccgtctgggcctggt ttttctctt chr16:203025-203525 - 31 3.16e-09 AATTCACCAG TAAACCCATCTGGACCTGAT GCTTTCTGTT chr9:129741133-129741633 + 32 4.59e-09 AAAACTCCTG TAAACCCAGCAGGGCCTAGA TCTTTCTCAG chr21:43309827-43310327 - 50 4.59e-09 GAATGGCCTG TGAAACTATCCGGGCCTGGA GCCATTTGTA chr17:40503412-40503912 + 66 5.22e-09 atttcaccag taaaactgtctggtcctggt gctttctgtt chr2:109505730-109506230 + 45 5.88e-09 aaattacaca gcaacccatcagggcctggt gccgttttac chr10:11420063-11420563 - 52 5.88e-09 GATTCAAGAG TGAGCCCATCTGGGCCTTGT GCCTTTTATA chr7:129031346-129031846 - 30 6.65e-09 AATTCACCAG TAAAGCCATTTGGTCCTGGG CTTTTCTTCA chr15:76750110-76750610 - 9 8.45e-09 AATTCACCCA TAAAGCCATCAGGTCCAGGG ATTTTCTT chr16:11584524-11585024 + 33 1.20e-08 ACCCATTGCG TAAACCCCTCAGGACCAGGA GCCATTCTTC chr9:128134047-128134547 + 47 1.20e-08 aattcaccag taaaaccattaggtcctagg cttttctttc chr16:11212882-11213382 + 43 1.34e-08 AGGCAACCCG TAAACCCCTCGGGGCCCAGA GGCCACGcct chr17:2628448-2628948 + 54 1.68e-08 aattctgctg tgaatccgtctggtcctgga cctttttttg chr1:90055231-90055731 - 42 1.88e-08 AAGTCACCTA TAAAACCACCTAGGCCTGGG GCTTTTTGAG chr17:45423215-45423715 - 11 2.35e-08 TTCCCGCTCA TGAAACCCTCTGGACCGGGT GCCTTTTTCA chr5:180146654-180147154 + 69 2.61e-08 aattcaccag tgaaaccaccaggtccagga cttttttgtt chr11:75710193-75710693 + 36 2.91e-08 acttcacctg tgaaactgtctgtgcctggt gctttttttg chr19:6746763-6747263 - 27 3.60e-08 GAATCACCTG TAAAACCGTCGGGGCCTTGG GATTATTGGG chr16:47217265-47217765 + 31 3.60e-08 aattaactga taaaaccagctggtcccaga gccttttttg chr6:34965451-34965951 - 44 4.00e-08 GAATCACCAG TAAAGCCATCTGAGCCCAGA GCCTTTATGC chr10:98148725-98149225 + 54 4.44e-08 aattcaccag tgaagccatcaggtcctgag cttttcttta chr13:48330458-48330958 - 29 4.44e-08 AATTCACCAG TGAAGCCATCAGGTCCTGAG GCTTTTCTCT chr22:19848999-19849499 + 77 7.38e-08 AACTCACACA TAAAACCATCTGAACCCAGA GCCT chr3:52508773-52509273 + 43 7.38e-08 ATGTTGCTCA TAAAGCCTCCAGGGCCAGGT GCCTTTTAGG chr9:38097747-38098247 + 74 9.91e-08 aattcacctg taaaactgtatggacctggt gcctatt chr21:44393387-44393887 + 55 1.20e-07 gactcccctg tgagtccatctggacccagt gccttttttt chr13:51712756-51713256 - 51 1.32e-07 AATTCACCAG TAAAGGCATGTGGGCCTGGA GCTTTCTTTG chr15:100936761-10093726 + 47 1.60e-07 ACtttgccta taaaaccatacaggcctggt gctttttaat chr16:72127473-72127973 - 35 1.60e-07 AATTCACCTA TAAAACCATCTAGACCTAAT ACCATTGACA chr20:38181269-38181769 - 41 1.93e-07 GCCCCTCCCG TGCACCCATCAGGCCCTGGG GCCATTGCTG chr19:49320687-49321187 - 7 1.93e-07 AATTCACCCA TGAAGCCATCAGGTCCAGAG CTTTTC chr2:71540993-71541493 + 47 2.77e-07 aattcaccca taaaaccatatgggctgggt gccctttttg chr11:68486503-68487003 + 11 2.77e-07 aattcaccag tgaacccatgtgcgcctagt gctttctatt chr19:4657989-4658489 - 33 3.31e-07 CTGTCACCCG TAAGACTTTCAGTGCCTGGG GCCTTTTCAC chr17:64325603-64326103 + 49 3.31e-07 GTGTCACCTA TCCACCTATCAGTGCCTGGA CCCTTATCTG chr16:22258560-22259060 - 45 3.95e-07 AACTCACCTA TAAAACCACTGGGGCCATGA ACCTTTTCGA chr19:5482309-5482809 - 40 4.31e-07 CTGTCTCCCA GAAACCCCTTGGGGCCCAGA GCCATTGAAA chr19:18250279-18250779 + 46 4.31e-07 ACAAGCCTAA GACACCCACCAGGGCCCAGA GCCTTTTAAA chr3:129036876-129037376 - 31 5.11e-07 AGCTCTCCCG TGAGCCTACCAGGTCCCGGA GCCTCTGCAG chr1:110232853-110233353 + 59 5.57e-07 AAATCTCCCA TGCGACCCTCGGGGCCCAGA GCCATCTGGG chr22:31102210-31102710 + 44 5.57e-07 GGCACACTCA GATGCCCCTCAGGGCCTGGA GCCATTGTGG chr3:25582174-25582674 + 44 6.59e-07 GCATCACGCA GCCACCCAGCAGGGCCTGGA GCCTTCCCAG chr1:8179383-8179883 + 36 8.45e-07 aattcacctg taaaaccctcagagcctgtg tgttttgttg chr1:214045158-214045658 - 52 1.37e-06 AATTCACCCA TAAAACTCTGAAGGCCAGGT GCCTTTGGGG chr4:184011189-184011689 + 64 1.60e-06 TGCACACACA TGCGCCTAGCGGGGCCTGGG GCTTTATGCA chr19:35673223-35673723 + 69 3.16e-06 CTACAGCGCG GACACCGACCAGGGCCAGGA GCTGACCCGC chr9:137422965-137423465 - 12 3.16e-06 GTGCGCCGGA TAAAGCCCTCCGGGCCAGCG GCTGCGGTCG chr5:175831876-175832376 - 39 3.40e-06 TTATCTCCTG TACCACTTTCAGGGCCAGGA ACCTTTTTGG chr17:9894586-9895086 - 36 5.22e-06 GATTCACCCA TAGATCCCTTAGTGCCAGGT GCCATTGCTG chr21:46117624-46118124 - 46 7.89e-06 GCTTCCCCCG GGTAACCGTCGGGGCCCTGA GAGAGGAGTG chr19:3729060-3729560 - 45 1.52e-05 ATATCACCTG TCAGCCACTTGGGGCCCAGA ACCATTTTAA chr19:3730917-3731417 + 42 1.52e-05 ATATCACCTG TCAGCCACTTGGGGCCCAGA ACCATTTTAT chr17:9053604-9054104 - 29 2.35e-05 TTTTCACCTG TGAAGCCACTAGCTCCATGA GCCATTTGCT chr5:142120098-142120598 + 49 2.35e-05 ttttcacttg tacttctaccagtacctggt gccaccagtt chr16:27525014-27525514 + 31 4.77e-05 AAGTCCCCAG GACACCTCTCAGTTCCGTGA GCCTTTTTTC chr16:88495567-88496067 + 43 6.31e-05 CCTTCACCAG GAGGCGTCTCGGGGCCTAGA GCTTTTTCCT chr12:2810208-2810708 + 40 9.20e-05 AAAGCACCAG GAATACCTGTGGGACCCAGT GCCTTTTAAT chr16:181302-181802 + 25 1.19e-04 AACGCACGCG GGCGGCGTTAAGGGCCCGGG GCTGACTCGG chr19:40205235-40205735 - 39 5.14e-04 GTGTCACCTG TAAGTACTTCAGTACAGGGT GCCTTTTTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRAAMCCATCWGGGCCTGGW MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1479766-1480266 6.4e-12 48_[-1]_32 chr1:42602446-42602946 6.4e-12 25_[-1]_55 chr8:28613369-28613869 6.4e-12 27_[+1]_53 chr16:50177101-50177601 1.3e-11 42_[+1]_38 chr20:24881866-24882366 1.3e-11 33_[-1]_47 chr4:1120371-1120871 1.3e-11 46_[-1]_34 chr12:108683540-10868404 1.4e-11 44_[-1]_36 chr19:7817249-7817749 2.2e-11 28_[+1]_52 chr2:8983204-8983704 2.2e-11 24_[-1]_56 chr3:60703573-60704073 2.2e-11 30_[+1]_50 chr3:9518287-9518787 2.7e-11 33_[+1]_47 chr1:236372410-236372910 3.3e-11 59_[+1]_21 chr3:126359250-126359750 5.1e-11 31_[+1]_49 chr14:104273365-10427386 5.1e-11 69_[+1]_11 chr15:95851769-95852269 5.1e-11 14_[-1]_66 chr1:85014547-85015047 1.5e-10 57_[+1]_23 chr22:23944162-23944662 1.5e-10 17_[-1]_63 chr1:47861402-47861902 2.1e-10 43_[-1]_37 chr8:27831648-27832148 2.1e-10 41_[-1]_39 chr1:15267313-15267813 3.3e-10 52_[+1]_28 chr7:135871663-135872163 8e-10 50_[+1]_30 chr17:64771859-64772359 1.1e-09 23_[-1]_57 chr7:44302021-44302521 1.1e-09 59_[-1]_21 chr1:210334718-210335218 1.1e-09 49_[-1]_31 chr6:20687020-20687520 1.1e-09 65_[+1]_15 chr12:92878738-92879238 1.4e-09 16_[-1]_64 chr19:45260889-45261389 2.4e-09 25_[-1]_55 chr15:96240919-96241419 2.4e-09 56_[+1]_24 chr6:129945973-129946473 2.4e-09 40_[+1]_40 chr6:27004086-27004586 2.4e-09 71_[+1]_9 chr16:203025-203525 3.2e-09 30_[-1]_50 chr9:129741133-129741633 4.6e-09 31_[+1]_49 chr21:43309827-43310327 4.6e-09 49_[-1]_31 chr17:40503412-40503912 5.2e-09 65_[+1]_15 chr2:109505730-109506230 5.9e-09 44_[+1]_36 chr10:11420063-11420563 5.9e-09 51_[-1]_29 chr7:129031346-129031846 6.6e-09 29_[-1]_51 chr15:76750110-76750610 8.4e-09 8_[-1]_72 chr16:11584524-11585024 1.2e-08 32_[+1]_48 chr9:128134047-128134547 1.2e-08 46_[+1]_34 chr16:11212882-11213382 1.3e-08 42_[+1]_38 chr17:2628448-2628948 1.7e-08 53_[+1]_27 chr1:90055231-90055731 1.9e-08 41_[-1]_39 chr17:45423215-45423715 2.3e-08 10_[-1]_70 chr5:180146654-180147154 2.6e-08 68_[+1]_12 chr11:75710193-75710693 2.9e-08 35_[+1]_45 chr19:6746763-6747263 3.6e-08 26_[-1]_54 chr16:47217265-47217765 3.6e-08 30_[+1]_50 chr6:34965451-34965951 4e-08 43_[-1]_37 chr10:98148725-98149225 4.4e-08 53_[+1]_27 chr13:48330458-48330958 4.4e-08 28_[-1]_52 chr22:19848999-19849499 7.4e-08 76_[+1]_4 chr3:52508773-52509273 7.4e-08 42_[+1]_38 chr9:38097747-38098247 9.9e-08 73_[+1]_7 chr21:44393387-44393887 1.2e-07 54_[+1]_26 chr13:51712756-51713256 1.3e-07 50_[-1]_30 chr15:100936761-10093726 1.6e-07 46_[+1]_34 chr16:72127473-72127973 1.6e-07 34_[-1]_46 chr20:38181269-38181769 1.9e-07 40_[-1]_40 chr19:49320687-49321187 1.9e-07 6_[-1]_74 chr2:71540993-71541493 2.8e-07 46_[+1]_34 chr11:68486503-68487003 2.8e-07 10_[+1]_70 chr19:4657989-4658489 3.3e-07 32_[-1]_48 chr17:64325603-64326103 3.3e-07 48_[+1]_32 chr16:22258560-22259060 3.9e-07 44_[-1]_36 chr19:5482309-5482809 4.3e-07 39_[-1]_41 chr19:18250279-18250779 4.3e-07 45_[+1]_35 chr3:129036876-129037376 5.1e-07 30_[-1]_50 chr1:110232853-110233353 5.6e-07 58_[+1]_22 chr22:31102210-31102710 5.6e-07 43_[+1]_37 chr3:25582174-25582674 6.6e-07 43_[+1]_37 chr1:8179383-8179883 8.4e-07 35_[+1]_45 chr1:214045158-214045658 1.4e-06 51_[-1]_29 chr4:184011189-184011689 1.6e-06 63_[+1]_17 chr19:35673223-35673723 3.2e-06 68_[+1]_12 chr9:137422965-137423465 3.2e-06 11_[-1]_69 chr5:175831876-175832376 3.4e-06 38_[-1]_42 chr17:9894586-9895086 5.2e-06 35_[-1]_45 chr21:46117624-46118124 7.9e-06 45_[-1]_35 chr19:3729060-3729560 1.5e-05 44_[-1]_36 chr19:3730917-3731417 1.5e-05 41_[+1]_39 chr17:9053604-9054104 2.4e-05 28_[-1]_52 chr5:142120098-142120598 2.4e-05 48_[+1]_32 chr16:27525014-27525514 4.8e-05 30_[+1]_50 chr16:88495567-88496067 6.3e-05 42_[+1]_38 chr12:2810208-2810708 9.2e-05 39_[+1]_41 chr16:181302-181802 0.00012 24_[+1]_56 chr19:40205235-40205735 0.00051 38_[-1]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRAAMCCATCWGGGCCTGGW MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TRAAMCCATCWGGGCCTGGW width=20 seqs=88 chrX:1479766-1480266 ( 49) TAAACCCATCTGGGCCTGGA 1 chr1:42602446-42602946 ( 26) TGAAACCATCTGGGCCTGGT 1 chr8:28613369-28613869 ( 28) TGAAACCATCTGGGCCTGGT 1 chr16:50177101-50177601 ( 43) TGAACCCATCTGGGCCTGGT 1 chr20:24881866-24882366 ( 34) TAAAGCCATCTGGGCCTGGT 1 chr4:1120371-1120871 ( 47) TGAACCCATCTGGGCCTGGT 1 chr12:108683540-10868404 ( 45) TAAAACCATCTGGGCCTAGT 1 chr19:7817249-7817749 ( 29) TAAAACTATCTGGGCCTGGT 1 chr2:8983204-8983704 ( 25) TAAAACCATCTGGGCCTAGA 1 chr3:60703573-60704073 ( 31) TAAAACTATCTGGGCCTGGT 1 chr3:9518287-9518787 ( 34) TGAACCCATCAGGGCCTGGT 1 chr1:236372410-236372910 ( 60) TAAATCCATCTGGGCCTGGT 1 chr3:126359250-126359750 ( 32) TAAAACCATTTGGGCCTGGT 1 chr14:104273365-10427386 ( 70) TGAAACCATCTGGGCCTAGT 1 chr15:95851769-95852269 ( 15) TAAAACCATTTGGGCCTGGT 1 chr1:85014547-85015047 ( 58) TAAAACCATCTGGGCCCAGT 1 chr22:23944162-23944662 ( 18) TAAAACCATCTGGTCCTGGG 1 chr1:47861402-47861902 ( 44) TGAATCCATCAGGGCCTGGT 1 chr8:27831648-27832148 ( 42) TAAAGCTATCTGGGCCTGGA 1 chr1:15267313-15267813 ( 53) GGAACCCATCTGGGCCTGGT 1 chr7:135871663-135872163 ( 51) TAAAACCATATGGGCCTGGG 1 chr17:64771859-64772359 ( 24) TGAAACCCTCTGGACCTGGT 1 chr7:44302021-44302521 ( 60) TGAACCAATCTGGGCCTGGT 1 chr1:210334718-210335218 ( 50) TAAAGCCATCTGGGCCTGAA 1 chr6:20687020-20687520 ( 66) TGAACCAATCTGGGCCTGGT 1 chr12:92878738-92879238 ( 17) TAAAACCATCTGGGCTTGGA 1 chr19:45260889-45261389 ( 26) TAAGACCATCGGGGCCCGGT 1 chr15:96240919-96241419 ( 57) TAAAACCATCTGGGTCTGGT 1 chr6:129945973-129946473 ( 41) TAAAACCATCTGGGACTGGT 1 chr6:27004086-27004586 ( 72) TGAATCCGTCTGGGCCTGGT 1 chr16:203025-203525 ( 31) TAAACCCATCTGGACCTGAT 1 chr9:129741133-129741633 ( 32) TAAACCCAGCAGGGCCTAGA 1 chr21:43309827-43310327 ( 50) TGAAACTATCCGGGCCTGGA 1 chr17:40503412-40503912 ( 66) TAAAACTGTCTGGTCCTGGT 1 chr2:109505730-109506230 ( 45) GCAACCCATCAGGGCCTGGT 1 chr10:11420063-11420563 ( 52) TGAGCCCATCTGGGCCTTGT 1 chr7:129031346-129031846 ( 30) TAAAGCCATTTGGTCCTGGG 1 chr15:76750110-76750610 ( 9) TAAAGCCATCAGGTCCAGGG 1 chr16:11584524-11585024 ( 33) TAAACCCCTCAGGACCAGGA 1 chr9:128134047-128134547 ( 47) TAAAACCATTAGGTCCTAGG 1 chr16:11212882-11213382 ( 43) TAAACCCCTCGGGGCCCAGA 1 chr17:2628448-2628948 ( 54) TGAATCCGTCTGGTCCTGGA 1 chr1:90055231-90055731 ( 42) TAAAACCACCTAGGCCTGGG 1 chr17:45423215-45423715 ( 11) TGAAACCCTCTGGACCGGGT 1 chr5:180146654-180147154 ( 69) TGAAACCACCAGGTCCAGGA 1 chr11:75710193-75710693 ( 36) TGAAACTGTCTGTGCCTGGT 1 chr19:6746763-6747263 ( 27) TAAAACCGTCGGGGCCTTGG 1 chr16:47217265-47217765 ( 31) TAAAACCAGCTGGTCCCAGA 1 chr6:34965451-34965951 ( 44) TAAAGCCATCTGAGCCCAGA 1 chr10:98148725-98149225 ( 54) TGAAGCCATCAGGTCCTGAG 1 chr13:48330458-48330958 ( 29) TGAAGCCATCAGGTCCTGAG 1 chr22:19848999-19849499 ( 77) TAAAACCATCTGAACCCAGA 1 chr3:52508773-52509273 ( 43) TAAAGCCTCCAGGGCCAGGT 1 chr9:38097747-38098247 ( 74) TAAAACTGTATGGACCTGGT 1 chr21:44393387-44393887 ( 55) TGAGTCCATCTGGACCCAGT 1 chr13:51712756-51713256 ( 51) TAAAGGCATGTGGGCCTGGA 1 chr15:100936761-10093726 ( 47) TAAAACCATACAGGCCTGGT 1 chr16:72127473-72127973 ( 35) TAAAACCATCTAGACCTAAT 1 chr20:38181269-38181769 ( 41) TGCACCCATCAGGCCCTGGG 1 chr19:49320687-49321187 ( 7) TGAAGCCATCAGGTCCAGAG 1 chr2:71540993-71541493 ( 47) TAAAACCATATGGGCTGGGT 1 chr11:68486503-68487003 ( 11) TGAACCCATGTGCGCCTAGT 1 chr19:4657989-4658489 ( 33) TAAGACTTTCAGTGCCTGGG 1 chr17:64325603-64326103 ( 49) TCCACCTATCAGTGCCTGGA 1 chr16:22258560-22259060 ( 45) TAAAACCACTGGGGCCATGA 1 chr19:5482309-5482809 ( 40) GAAACCCCTTGGGGCCCAGA 1 chr19:18250279-18250779 ( 46) GACACCCACCAGGGCCCAGA 1 chr3:129036876-129037376 ( 31) TGAGCCTACCAGGTCCCGGA 1 chr1:110232853-110233353 ( 59) TGCGACCCTCGGGGCCCAGA 1 chr22:31102210-31102710 ( 44) GATGCCCCTCAGGGCCTGGA 1 chr3:25582174-25582674 ( 44) GCCACCCAGCAGGGCCTGGA 1 chr1:8179383-8179883 ( 36) TAAAACCCTCAGAGCCTGTG 1 chr1:214045158-214045658 ( 52) TAAAACTCTGAAGGCCAGGT 1 chr4:184011189-184011689 ( 64) TGCGCCTAGCGGGGCCTGGG 1 chr19:35673223-35673723 ( 69) GACACCGACCAGGGCCAGGA 1 chr9:137422965-137423465 ( 12) TAAAGCCCTCCGGGCCAGCG 1 chr5:175831876-175832376 ( 39) TACCACTTTCAGGGCCAGGA 1 chr17:9894586-9895086 ( 36) TAGATCCCTTAGTGCCAGGT 1 chr21:46117624-46118124 ( 46) GGTAACCGTCGGGGCCCTGA 1 chr19:3729060-3729560 ( 45) TCAGCCACTTGGGGCCCAGA 1 chr19:3730917-3731417 ( 42) TCAGCCACTTGGGGCCCAGA 1 chr17:9053604-9054104 ( 29) TGAAGCCACTAGCTCCATGA 1 chr5:142120098-142120598 ( 49) TACTTCTACCAGTACCTGGT 1 chr16:27525014-27525514 ( 31) GACACCTCTCAGTTCCGTGA 1 chr16:88495567-88496067 ( 43) GAGGCGTCTCGGGGCCTAGA 1 chr12:2810208-2810708 ( 40) GAATACCTGTGGGACCCAGT 1 chr16:181302-181802 ( 25) GGCGGCGTTAAGGGCCCGGG 1 chr19:40205235-40205735 ( 39) TAAGTACTTCAGTACAGGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRAAMCCATCWGGGCCTGGW MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 48438 bayes= 7.7602 E= 4.4e-206 -1310 -1310 -90 181 129 -216 42 -1310 175 -102 -348 -343 173 -448 -78 -343 85 27 -67 -144 -443 193 -348 -1310 -244 156 -348 -44 147 -58 -167 -185 -1310 -131 -216 177 -211 163 -290 -98 42 -290 -90 102 -244 -1310 191 -1310 -285 -348 177 -163 -98 -448 147 -63 -443 194 -1310 -443 -443 193 -1310 -343 -85 -48 -248 137 -11 -1310 147 -185 -185 -448 184 -443 52 -1310 -48 92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRAAMCCATCWGGGCCTGGW MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 88 E= 4.4e-206 0.000000 0.000000 0.136364 0.863636 0.602273 0.056818 0.340909 0.000000 0.829545 0.125000 0.022727 0.022727 0.818182 0.011364 0.147727 0.022727 0.443182 0.306818 0.159091 0.090909 0.011364 0.965909 0.022727 0.000000 0.045455 0.750000 0.022727 0.181818 0.681818 0.170455 0.079545 0.068182 0.000000 0.102273 0.056818 0.840909 0.056818 0.784091 0.034091 0.125000 0.329545 0.034091 0.136364 0.500000 0.045455 0.000000 0.954545 0.000000 0.034091 0.022727 0.863636 0.079545 0.125000 0.011364 0.704545 0.159091 0.011364 0.977273 0.000000 0.011364 0.011364 0.965909 0.000000 0.022727 0.136364 0.181818 0.045455 0.636364 0.227273 0.000000 0.704545 0.068182 0.068182 0.011364 0.909091 0.011364 0.352273 0.000000 0.181818 0.465909 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRAAMCCATCWGGGCCTGGW MEME-1 regular expression -------------------------------------------------------------------------------- T[AG]AA[AC]CCATC[TA]GGGCCT[GA]G[TA] -------------------------------------------------------------------------------- Time 410.13 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGGTGAATTCTACCAAACATT MEME-2 width = 22 sites = 38 llr = 728 E-value = 6.8e-121 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGGTGAATTCTACCAAACATT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :21:11a9::1:81198916:: pos.-specific C 8:::1::::181:68::1711: probability G :19919:111::111:1::111 matrix T 26::8::19929131:::3189 bits 2.0 * 1.8 * * 1.6 ** ** * * * 1.4 * ** ***** * * * Relative 1.2 * ******** ** *** ** Entropy 1.0 * *********** *** ** (27.7 bits) 0.8 ************* ***** ** 0.6 ******************* ** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel CTGGTGAATTCTACCAAACATT consensus A T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGTGAATTCTACCAAACATT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr5:180146654-180147154 - 47 5.15e-14 GGTGGTTTCA CTGGTGAATTCTACCAAACATT TAAAAAAGAA chr6:27004086-27004586 - 50 5.15e-14 GACGGATTCA CTGGTGAATTCTACCAAACATT TAAGGAAGAA chr9:128134047-128134547 - 25 1.51e-13 AATGGTTTTA CTGGTGAATTCTACCAAATATT TAAAGAAAAT chr10:98148725-98149225 - 32 7.15e-13 GATGGCTTCA CTGGTGAATTCTACCAGACATT CAAAGAATAC chr13:48330458-48330958 + 49 7.15e-13 gatggcttca ctggtgaattctaccagacatt tgaagaatac chr4:1120371-1120871 + 67 1.47e-12 gatgggttca ctggtgaattctaacaaacatt taaggaagaa chr1:15267313-15267813 - 31 2.34e-12 GATGGGTTCC CTGGTGAATTCTATCAGACATT TAAGGAAGAA chr3:9518287-9518787 - 12 2.85e-12 GATGGGTTCA CTGGTGAATTCTGCCAAACATT AAAGGAAGAA chr1:42602446-42602946 + 46 2.85e-12 gatggtttca ctggtgatttctaccaaacatt taagaataga chr17:40503412-40503912 - 44 7.33e-12 GACAGTTTTA CTGGTGAAATCTACCAAACATT TGAGGAAGAA chr1:85014547-85015047 - 36 9.58e-12 GATGGTTTTA CGGGTGAATTCTACTAAACATT TAAGGAACAA chr1:236372410-236372910 - 38 1.31e-11 GATGGATTTA CTGGTGAGTTTTACCAAACATT TAATGAAGAA chr16:50177101-50177601 - 21 1.95e-11 GATGGGTTCA CTGGTGAATTCTACCAAACTGT TAAATTAGAT chr7:129031346-129031846 + 50 2.28e-11 aatggcttta ctggtgaattctacaaaacatg taaagaaata chr12:92878738-92879238 + 37 3.62e-11 gatggtttta ctagtgaattctagcaaacatt caaggtatac chr1:47861402-47861902 + 64 5.38e-11 gatggattca ctagtgaattctgccaaacatt taggaaagag chr10:92602130-92602630 - 23 6.94e-11 GATAGTTTCA TAGGTGAATTCTATAAAACATT TCAAGAAGAT chr2:8983204-8983704 + 45 1.76e-10 gatggtttta ctggagaattctatcaaatgtt taaaaaagaa chr15:76750110-76750610 + 29 2.11e-10 gatggcttta tgggtgaattctatcaaacact taaagaactg chr19:49320687-49321187 + 27 3.49e-10 gatggcttca tgggtgaattctactaaacctt taatgaatta chr13:51712756-51713256 + 71 6.13e-10 catgccttta ctggtgaattttatgaaaaatt caaggaag chr1:214045158-214045658 + 72 8.21e-10 CAGAGTTTTA TGGGTGAATTCTATCAACTATT CAAAAAT chr16:203025-203525 + 51 1.20e-09 gatgggttta ctggtgaattctaccaaagcat tagggagcaa chr14:104273365-10427386 - 48 5.25e-09 GATGGTTTCA CTGGTGAACTCTACCAACTATG TAAGGAATAA chr17:2628448-2628948 - 32 5.69e-09 GACGGATTCA CAGCAGAATTCTATCAGACATT CAAAGAAGAG chr22:23944162-23944662 + 38 7.18e-09 gatggtttta ctggtgaattcaaccaaaagct tgaagaacta chr6:20687020-20687520 - 44 7.83e-09 GATTGGTTCA CTGGTGAATGTTACCATATTTT TTTTAATTAT chr20:58916634-58917134 + 20 1.37e-08 ggtggtttca caggggaattatattaaacctt taaaagtcaa chr12:108683540-10868404 + 65 2.36e-08 gatggtttta caggtgagtgtcaccaaatatt caaggaagag chrX:1479766-1480266 + 69 3.39e-08 gatgggttta ctgatgaattttccccaacatt taaggaagaa chr11:75710193-75710693 - 14 5.64e-08 GACAGTTTCA CAGGTGAAGTTTAGCAAATCTG GAAAGATTAG chr15:95851769-95852269 + 35 5.64e-08 aatggtttta ctggcaaattctatataatatt caaaaggaaa chr2:71540993-71541493 - 25 6.05e-08 TATGGTTTTA TGGGTGAATTATTTCAAACCCT CAAAGGACTG chr8:28613369-28613869 - 6 6.49e-08 GATGGTTTCA CTAGTGAATTCTAAGAAATGGT TAAGG chr1:8179383-8179883 - 14 7.52e-08 GAGGGTTTTA CAGGTGAATTCCTCAAAACTTC CATGAGACAA chr19:45260889-45261389 + 46 1.30e-07 gatggtctta caggcaaatcctaccagatgtt cacattttat chr10:86759526-86760026 - 34 2.05e-07 AATGGTCACA TAGGGGAGGTCTTCCAAACTTT CAAGGAACAG chr19:6746763-6747263 + 47 3.02e-07 gacggtttta caggtgattcctaccacactta gttacttctt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGTGAATTCTACCAAACATT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:180146654-180147154 5.1e-14 46_[-2]_32 chr6:27004086-27004586 5.1e-14 49_[-2]_29 chr9:128134047-128134547 1.5e-13 24_[-2]_54 chr10:98148725-98149225 7.1e-13 31_[-2]_47 chr13:48330458-48330958 7.1e-13 48_[+2]_30 chr4:1120371-1120871 1.5e-12 66_[+2]_12 chr1:15267313-15267813 2.3e-12 30_[-2]_48 chr3:9518287-9518787 2.9e-12 11_[-2]_67 chr1:42602446-42602946 2.9e-12 45_[+2]_33 chr17:40503412-40503912 7.3e-12 43_[-2]_35 chr1:85014547-85015047 9.6e-12 35_[-2]_43 chr1:236372410-236372910 1.3e-11 37_[-2]_41 chr16:50177101-50177601 1.9e-11 20_[-2]_58 chr7:129031346-129031846 2.3e-11 49_[+2]_29 chr12:92878738-92879238 3.6e-11 36_[+2]_42 chr1:47861402-47861902 5.4e-11 63_[+2]_15 chr10:92602130-92602630 6.9e-11 22_[-2]_56 chr2:8983204-8983704 1.8e-10 44_[+2]_34 chr15:76750110-76750610 2.1e-10 28_[+2]_50 chr19:49320687-49321187 3.5e-10 26_[+2]_52 chr13:51712756-51713256 6.1e-10 70_[+2]_8 chr1:214045158-214045658 8.2e-10 71_[+2]_7 chr16:203025-203525 1.2e-09 50_[+2]_28 chr14:104273365-10427386 5.3e-09 47_[-2]_31 chr17:2628448-2628948 5.7e-09 31_[-2]_47 chr22:23944162-23944662 7.2e-09 37_[+2]_41 chr6:20687020-20687520 7.8e-09 43_[-2]_35 chr20:58916634-58917134 1.4e-08 19_[+2]_59 chr12:108683540-10868404 2.4e-08 64_[+2]_14 chrX:1479766-1480266 3.4e-08 68_[+2]_10 chr11:75710193-75710693 5.6e-08 13_[-2]_65 chr15:95851769-95852269 5.6e-08 34_[+2]_44 chr2:71540993-71541493 6.1e-08 24_[-2]_54 chr8:28613369-28613869 6.5e-08 5_[-2]_73 chr1:8179383-8179883 7.5e-08 13_[-2]_65 chr19:45260889-45261389 1.3e-07 45_[+2]_33 chr10:86759526-86760026 2.1e-07 33_[-2]_45 chr19:6746763-6747263 3e-07 46_[+2]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGTGAATTCTACCAAACATT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGGTGAATTCTACCAAACATT width=22 seqs=38 chr5:180146654-180147154 ( 47) CTGGTGAATTCTACCAAACATT 1 chr6:27004086-27004586 ( 50) CTGGTGAATTCTACCAAACATT 1 chr9:128134047-128134547 ( 25) CTGGTGAATTCTACCAAATATT 1 chr10:98148725-98149225 ( 32) CTGGTGAATTCTACCAGACATT 1 chr13:48330458-48330958 ( 49) CTGGTGAATTCTACCAGACATT 1 chr4:1120371-1120871 ( 67) CTGGTGAATTCTAACAAACATT 1 chr1:15267313-15267813 ( 31) CTGGTGAATTCTATCAGACATT 1 chr3:9518287-9518787 ( 12) CTGGTGAATTCTGCCAAACATT 1 chr1:42602446-42602946 ( 46) CTGGTGATTTCTACCAAACATT 1 chr17:40503412-40503912 ( 44) CTGGTGAAATCTACCAAACATT 1 chr1:85014547-85015047 ( 36) CGGGTGAATTCTACTAAACATT 1 chr1:236372410-236372910 ( 38) CTGGTGAGTTTTACCAAACATT 1 chr16:50177101-50177601 ( 21) CTGGTGAATTCTACCAAACTGT 1 chr7:129031346-129031846 ( 50) CTGGTGAATTCTACAAAACATG 1 chr12:92878738-92879238 ( 37) CTAGTGAATTCTAGCAAACATT 1 chr1:47861402-47861902 ( 64) CTAGTGAATTCTGCCAAACATT 1 chr10:92602130-92602630 ( 23) TAGGTGAATTCTATAAAACATT 1 chr2:8983204-8983704 ( 45) CTGGAGAATTCTATCAAATGTT 1 chr15:76750110-76750610 ( 29) TGGGTGAATTCTATCAAACACT 1 chr19:49320687-49321187 ( 27) TGGGTGAATTCTACTAAACCTT 1 chr13:51712756-51713256 ( 71) CTGGTGAATTTTATGAAAAATT 1 chr1:214045158-214045658 ( 72) TGGGTGAATTCTATCAACTATT 1 chr16:203025-203525 ( 51) CTGGTGAATTCTACCAAAGCAT 1 chr14:104273365-10427386 ( 48) CTGGTGAACTCTACCAACTATG 1 chr17:2628448-2628948 ( 32) CAGCAGAATTCTATCAGACATT 1 chr22:23944162-23944662 ( 38) CTGGTGAATTCAACCAAAAGCT 1 chr6:20687020-20687520 ( 44) CTGGTGAATGTTACCATATTTT 1 chr20:58916634-58917134 ( 20) CAGGGGAATTATATTAAACCTT 1 chr12:108683540-10868404 ( 65) CAGGTGAGTGTCACCAAATATT 1 chrX:1479766-1480266 ( 69) CTGATGAATTTTCCCCAACATT 1 chr11:75710193-75710693 ( 14) CAGGTGAAGTTTAGCAAATCTG 1 chr15:95851769-95852269 ( 35) CTGGCAAATTCTATATAATATT 1 chr2:71540993-71541493 ( 25) TGGGTGAATTATTTCAAACCCT 1 chr8:28613369-28613869 ( 6) CTAGTGAATTCTAAGAAATGGT 1 chr1:8179383-8179883 ( 14) CAGGTGAATTCCTCAAAACTTC 1 chr19:45260889-45261389 ( 46) CAGGCAAATCCTACCAGATGTT 1 chr10:86759526-86760026 ( 34) TAGGGGAGGTCTTCCAAACTTT 1 chr19:6746763-6747263 ( 47) CAGGTGATTCCTACCACACTTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGTGAATTCTACCAAACATT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47242 bayes= 11.1767 E= 6.8e-121 -1189 173 -1189 -64 -5 -1189 -95 136 -164 -1189 186 -1189 -322 -327 190 -1189 -222 -227 -227 178 -222 -1189 190 -1189 202 -1189 -1189 -1189 182 -1189 -169 -222 -322 -327 -227 186 -1189 -227 -227 186 -222 164 -1189 -64 -322 -227 -1189 190 178 -327 -227 -164 -222 131 -227 10 -122 159 -227 -164 194 -327 -1189 -322 173 -327 -95 -322 194 -227 -1189 -1189 -222 137 -327 10 136 -95 -127 -90 -322 -169 -227 178 -322 -327 -169 182 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGTGAATTCTACCAAACATT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 38 E= 6.8e-121 0.000000 0.842105 0.000000 0.157895 0.236842 0.000000 0.131579 0.631579 0.078947 0.000000 0.921053 0.000000 0.026316 0.026316 0.947368 0.000000 0.052632 0.052632 0.052632 0.842105 0.052632 0.000000 0.947368 0.000000 1.000000 0.000000 0.000000 0.000000 0.868421 0.000000 0.078947 0.052632 0.026316 0.026316 0.052632 0.894737 0.000000 0.052632 0.052632 0.894737 0.052632 0.789474 0.000000 0.157895 0.026316 0.052632 0.000000 0.921053 0.842105 0.026316 0.052632 0.078947 0.052632 0.631579 0.052632 0.263158 0.105263 0.763158 0.052632 0.078947 0.947368 0.026316 0.000000 0.026316 0.815789 0.026316 0.131579 0.026316 0.947368 0.052632 0.000000 0.000000 0.052632 0.657895 0.026316 0.263158 0.631579 0.131579 0.105263 0.131579 0.026316 0.078947 0.052632 0.842105 0.026316 0.026316 0.078947 0.868421 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGTGAATTCTACCAAACATT MEME-2 regular expression -------------------------------------------------------------------------------- C[TA]GGTGAATTCTA[CT]CAAA[CT]ATT -------------------------------------------------------------------------------- Time 786.87 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTTTYTKTTTTGGAAGRTTWT MEME-3 width = 22 sites = 28 llr = 503 E-value = 3.5e-060 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTTTYTKTTTTGGAAGRTTWT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::1:111317934:15: pos.-specific C 381:16:11:::::::::::11 probability G 7::::::4:2:1792:75:1:1 matrix T 139a94a49698::11:19948 bits 2.0 * 1.8 * * 1.6 ** * * * * * 1.4 *** * * * * * Relative 1.2 **** * * * ** ** ** Entropy 1.0 ****** * * ** ** ** * (25.9 bits) 0.8 ******* * ************ 0.6 ******* ************** 0.4 ******* ************** 0.2 ********************** 0.0 ---------------------- Multilevel GCTTTCTGTTTTGGAAGGTTAT consensus CT T T G A AA T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTTYTKTTTTGGAAGRTTWT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr16:203025-203525 - 9 5.15e-14 TGGACCTGAT GCTTTCTGTTTTGGAAGGTTAT TAATATAC chr10:86990559-86991059 - 55 2.03e-13 TGGGCCAAGT GCTTTCTGTTTTGGAAGATTAT CAGTTTTTGA chr1:15267313-15267813 + 73 6.95e-13 tgggcctggt gctttctgttttagaaggttat taacta chr7:44302021-44302521 - 38 1.34e-12 TGGGCCTGGT GCTTTCTGTTTTGGAAAATTAT TATTCATTCA chr3:9518287-9518787 + 54 5.08e-12 agggcctggt gctttctcttttggaaggttat tgattactaa chr11:68486503-68487003 + 31 6.32e-12 tgcgcctagt gctttctattttagaaggttat tattcaaatt chr1:47861402-47861902 - 22 2.76e-11 AGGGCCTGGT GCTTTTTGTTTTGGAAGATTCT TAATTATCGA chr8:28613369-28613869 + 48 3.74e-11 tgggcctggt gctttctgttttggaaggttaa taattattga chr1:42602446-42602946 - 4 4.85e-11 TGGGCCTGGT GCTTTCTGTTTTAGAAGGTTAG TAT chr13:51712756-51713256 - 29 4.85e-11 TGGGCCTGGA GCTTTCTTTGTGGGAAGGTTTT AACTATACAT chrX:1479766-1480266 - 27 1.33e-10 TGGGCCTGGA GCCTTTTGTTTGGGAAGGTTAT TAAATTATCG chr15:101682553-10168305 + 15 3.79e-10 ttggcctgga gttttctgtgtaggaaggtttt taactatcaa chr4:1120371-1120871 - 25 5.25e-10 TGGGCCTGGT GCTTTCTGCTTTGGAAAGTTTC TATTGATTCA chr16:50177101-50177601 + 63 5.85e-10 tgggcctggt gccttttgctttagaaggttat tgattattga chr9:128134047-128134547 + 67 4.44e-09 aggtcctagg cttttctttcttgggagatttt tgattgctac chr20:24881866-24882366 - 12 4.84e-09 TGGGCCTGGT GCTTTTTATTTGAAAAGATTTT AACTTTTAAT chr13:48330458-48330958 - 6 6.82e-09 GGTCCTGAGG CTTTTCTCTATTGGTAGATTTT TGATT chr7:129031346-129031846 - 8 1.31e-08 TGGTCCTGGG CTTTTCTTCATTGGGAAGTTTT TCATTAC chr11:75710193-75710693 + 56 2.24e-08 tgtgcctggt gctttttttgtgggataatttc ttgataactt chr17:2628448-2628948 + 74 2.79e-08 tggtcctgga cctttttttgttggtaatttct taatt chr10:92602130-92602630 + 65 2.79e-08 agatctaggg cttttctttgtcaggagatttt tggttagtga chr17:25919962-25920462 - 18 8.34e-08 AAAGCTTCTG TCTTCTTTTTATAGGAAGTTAT TTCCTTTACT chr10:98148725-98149225 + 74 1.07e-07 aggtcctgag cttttctttaatgggagacttt ttatt chr21:44393387-44393887 + 76 1.14e-07 ggacccagtg ccttttttttttaattggtaat agt chr13:110870205-11087070 + 65 1.37e-07 ATGCTGACCA GCTCCCTGTTTTGGAAAATGAC CTCATCCCCA chr8:27831648-27832148 - 20 1.55e-07 TGGGCCTGGA GTTTTCTTAGTAGGAAGAGTTT AACTGTGATT chr10:11420063-11420563 - 30 3.42e-07 TGGGCCTTGT GCCTTTTATATTGGTTGTTAAT TATTGACTGA chr5:140726023-140726523 - 39 4.68e-07 AAACCCTGGA TCCTTTTATTATGGAAAGTGAG CTGAACTTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTTYTKTTTTGGAAGRTTWT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:203025-203525 5.1e-14 8_[-3]_70 chr10:86990559-86991059 2e-13 54_[-3]_24 chr1:15267313-15267813 7e-13 72_[+3]_6 chr7:44302021-44302521 1.3e-12 37_[-3]_41 chr3:9518287-9518787 5.1e-12 53_[+3]_25 chr11:68486503-68487003 6.3e-12 30_[+3]_48 chr1:47861402-47861902 2.8e-11 21_[-3]_57 chr8:28613369-28613869 3.7e-11 47_[+3]_31 chr1:42602446-42602946 4.8e-11 3_[-3]_75 chr13:51712756-51713256 4.8e-11 28_[-3]_50 chrX:1479766-1480266 1.3e-10 26_[-3]_52 chr15:101682553-10168305 3.8e-10 14_[+3]_64 chr4:1120371-1120871 5.3e-10 24_[-3]_54 chr16:50177101-50177601 5.9e-10 62_[+3]_16 chr9:128134047-128134547 4.4e-09 66_[+3]_12 chr20:24881866-24882366 4.8e-09 11_[-3]_67 chr13:48330458-48330958 6.8e-09 5_[-3]_73 chr7:129031346-129031846 1.3e-08 7_[-3]_71 chr11:75710193-75710693 2.2e-08 55_[+3]_23 chr17:2628448-2628948 2.8e-08 73_[+3]_5 chr10:92602130-92602630 2.8e-08 64_[+3]_14 chr17:25919962-25920462 8.3e-08 17_[-3]_61 chr10:98148725-98149225 1.1e-07 73_[+3]_5 chr21:44393387-44393887 1.1e-07 75_[+3]_3 chr13:110870205-11087070 1.4e-07 64_[+3]_14 chr8:27831648-27832148 1.5e-07 19_[-3]_59 chr10:11420063-11420563 3.4e-07 29_[-3]_49 chr5:140726023-140726523 4.7e-07 38_[-3]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTTYTKTTTTGGAAGRTTWT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTTTYTKTTTTGGAAGRTTWT width=22 seqs=28 chr16:203025-203525 ( 9) GCTTTCTGTTTTGGAAGGTTAT 1 chr10:86990559-86991059 ( 55) GCTTTCTGTTTTGGAAGATTAT 1 chr1:15267313-15267813 ( 73) GCTTTCTGTTTTAGAAGGTTAT 1 chr7:44302021-44302521 ( 38) GCTTTCTGTTTTGGAAAATTAT 1 chr3:9518287-9518787 ( 54) GCTTTCTCTTTTGGAAGGTTAT 1 chr11:68486503-68487003 ( 31) GCTTTCTATTTTAGAAGGTTAT 1 chr1:47861402-47861902 ( 22) GCTTTTTGTTTTGGAAGATTCT 1 chr8:28613369-28613869 ( 48) GCTTTCTGTTTTGGAAGGTTAA 1 chr1:42602446-42602946 ( 4) GCTTTCTGTTTTAGAAGGTTAG 1 chr13:51712756-51713256 ( 29) GCTTTCTTTGTGGGAAGGTTTT 1 chrX:1479766-1480266 ( 27) GCCTTTTGTTTGGGAAGGTTAT 1 chr15:101682553-10168305 ( 15) GTTTTCTGTGTAGGAAGGTTTT 1 chr4:1120371-1120871 ( 25) GCTTTCTGCTTTGGAAAGTTTC 1 chr16:50177101-50177601 ( 63) GCCTTTTGCTTTAGAAGGTTAT 1 chr9:128134047-128134547 ( 67) CTTTTCTTTCTTGGGAGATTTT 1 chr20:24881866-24882366 ( 12) GCTTTTTATTTGAAAAGATTTT 1 chr13:48330458-48330958 ( 6) CTTTTCTCTATTGGTAGATTTT 1 chr7:129031346-129031846 ( 8) CTTTTCTTCATTGGGAAGTTTT 1 chr11:75710193-75710693 ( 56) GCTTTTTTTGTGGGATAATTTC 1 chr17:2628448-2628948 ( 74) CCTTTTTTTGTTGGTAATTTCT 1 chr10:92602130-92602630 ( 65) CTTTTCTTTGTCAGGAGATTTT 1 chr17:25919962-25920462 ( 18) TCTTCTTTTTATAGGAAGTTAT 1 chr10:98148725-98149225 ( 74) CTTTTCTTTAATGGGAGACTTT 1 chr21:44393387-44393887 ( 76) CCTTTTTTTTTTAATTGGTAAT 1 chr13:110870205-11087070 ( 65) GCTCCCTGTTTTGGAAAATGAC 1 chr8:27831648-27832148 ( 20) GTTTTCTTAGTAGGAAGAGTTT 1 chr10:11420063-11420563 ( 30) GCCTTTTATATTGGTTGTTAAT 1 chr5:140726023-140726523 ( 39) TCCTTTTATTATGGAAAGTGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTTYTKTTTTGGAAGRTTWT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47242 bayes= 11.9425 E= 3.5e-060 -1145 -2 142 -178 -1145 156 -1145 2 -1145 -83 -1145 180 -1145 -283 -1145 197 -1145 -183 -1145 192 -1145 134 -1145 54 -1145 -1145 -1145 202 -78 -183 75 54 -278 -124 -1145 180 -78 -283 -25 130 -120 -1145 -1145 186 -178 -283 -83 161 22 -1145 149 -1145 -178 -1145 187 -1145 146 -1145 -51 -78 186 -1145 -1145 -120 22 -1145 149 -1145 68 -1145 108 -178 -1145 -283 -283 192 -178 -1145 -183 180 112 -183 -1145 68 -278 -124 -183 167 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTTYTKTTTTGGAAGRTTWT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 28 E= 3.5e-060 0.000000 0.250000 0.678571 0.071429 0.000000 0.750000 0.000000 0.250000 0.000000 0.142857 0.000000 0.857143 0.000000 0.035714 0.000000 0.964286 0.000000 0.071429 0.000000 0.928571 0.000000 0.642857 0.000000 0.357143 0.000000 0.000000 0.000000 1.000000 0.142857 0.071429 0.428571 0.357143 0.035714 0.107143 0.000000 0.857143 0.142857 0.035714 0.214286 0.607143 0.107143 0.000000 0.000000 0.892857 0.071429 0.035714 0.142857 0.750000 0.285714 0.000000 0.714286 0.000000 0.071429 0.000000 0.928571 0.000000 0.678571 0.000000 0.178571 0.142857 0.892857 0.000000 0.000000 0.107143 0.285714 0.000000 0.714286 0.000000 0.392857 0.000000 0.535714 0.071429 0.000000 0.035714 0.035714 0.928571 0.071429 0.000000 0.071429 0.857143 0.535714 0.071429 0.000000 0.392857 0.035714 0.107143 0.071429 0.785714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTTTYTKTTTTGGAAGRTTWT MEME-3 regular expression -------------------------------------------------------------------------------- [GC][CT]TTT[CT]T[GT]T[TG]TT[GA]GAA[GA][GA]TT[AT]T -------------------------------------------------------------------------------- Time 1133.93 secs. ******************************************************************************** ******************************************************************************** MOTIF RTGACTCAB MEME-4 width = 9 sites = 97 llr = 938 E-value = 1.2e-050 ******************************************************************************** -------------------------------------------------------------------------------- Motif RTGACTCAB MEME-4 Description -------------------------------------------------------------------------------- Simplified A 4::a:11a: pos.-specific C 1:::a:9:4 probability G 5:a:::::3 matrix T :a:::91:4 bits 2.0 **** * 1.8 **** * 1.6 ***** * 1.4 ***** * Relative 1.2 ******* Entropy 1.0 ******* (14.0 bits) 0.8 ******* 0.6 ******** 0.4 ********* 0.2 ********* 0.0 --------- Multilevel GTGACTCAC consensus A T sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGACTCAB MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------- chr1:68384280-68384780 + 28 1.50e-05 AACTTGTGTG GTGACTCAT ATGTTTGAAA chr5:1950711-1951211 - 6 1.50e-05 CACAGAGCAG ATGACTCAC GCGCC chr10:87586167-87586667 - 21 1.50e-05 GGAAGGTCTT ATGACTCAT GGCTACATTC chr17:13420856-13421356 - 11 1.50e-05 AAATCATCTA ATGACTCAT TTCTCAGAAT chr4:72112458-72112958 - 26 1.50e-05 TATGAGACAT ATGACTCAC AAGTGTCATA chr2:172253133-172253633 - 77 1.50e-05 GCCTGTAGGG GTGACTCAC GTGTGTCTGT chr11:36149644-36150144 + 28 1.50e-05 actgttcctc atgactcat gttcctcatg chr13:42720362-42720862 - 30 1.50e-05 AGCACACTCA GTGACTCAT CAGCTCCCGC chr22:40711475-40711975 - 27 1.50e-05 TAGCCTCTCG ATGACTCAT GTCTCTGTAA chr10:125973193-12597369 + 86 1.50e-05 ATTCAGTGAG ATGACTCAC AGTAAG chr16:9047735-9048235 - 83 1.50e-05 ATAAAGGCG ATGACTCAT CTCTTAGACA chr20:62088387-62088887 + 67 1.50e-05 agggcaatgc atgactcat gcttgtagtg chr17:40314516-40315016 - 70 1.50e-05 TGCCAGGGCA GTGACTCAC CTACCGAGAA chr16:4944746-4945246 - 20 1.50e-05 CAGGCAGAGC ATGACTCAC CGTAGACCCT chr11:3993989-3994489 - 66 1.50e-05 CAAGAGAAAA ATGACTCAT CACACACATG chr1:41870043-41870543 - 87 1.50e-05 CGAAT GTGACTCAT ACTAGGGGGT chr12:45415293-45415793 - 52 1.50e-05 CAACTTCCCT ATGACTCAC CCAACCCTAA chr1:236905044-236905544 + 41 1.50e-05 actcataatg atgactcat aagtgttgca chr13:100392675-10039317 + 20 1.50e-05 AGAAGGTTGA GTGACTCAC CCagggaagt chr6:119308193-119308693 - 74 1.50e-05 CCTTAAGTAT GTGACTCAT CAGTGGCGTT chr7:158109493-158109993 - 38 1.50e-05 CATTCACTCA GTGACTCAT CACACAGGGG chr6:43809245-43809745 + 23 1.50e-05 GGGTTCTGAA GTGACTCAC ACCTACACTG chr10:33134002-33134502 + 45 1.50e-05 GCAGAGGGCG ATGACTCAC CCCACTCATG chr5:141658026-141658526 - 20 1.50e-05 TAACTCATGG ATGACTCAT CCACTCATCC chr13:42762888-42763388 - 84 1.50e-05 TTAGAGTG ATGACTCAC CAAGACCAAG chrX:13647569-13648069 - 91 1.50e-05 C ATGACTCAT TCTCATGGAC chr5:133240441-133240941 + 30 1.50e-05 CTCTTAGCGC ATGACTCAT CTCTTCGCGC chr10:11539268-11539768 - 4 1.50e-05 CTTTTAAGCT GTGACTCAT CTT chr15:58332089-58332589 + 52 1.50e-05 GTGACGAAGC GTGACTCAC CACTCCGAGG chr1:212558822-212559322 - 4 1.50e-05 GGCGGGGCCG GTGACTCAC CCG chr6:14743919-14744419 + 30 1.50e-05 CGCCTCACCA GTGACTCAC TTGGTGACTC chr3:5023262-5023762 + 81 1.50e-05 TGCCAAACCG GTGACTCAC CTCCCAATTC chr20:1415944-1416444 + 51 1.50e-05 ctcagtctgg gtgactcat gctcacgctt chr1:225508453-225508953 + 7 1.50e-05 TAGTCA GTGACTCAC TAGTTGGCTG chr10:63707203-63707703 - 38 1.50e-05 ATGCTGGAAA ATGACTCAT TTACTACCTT chr20:25237761-25238261 + 8 1.50e-05 gtcgtag gtgactcat ccttgtgttg chr1:153566437-153566937 + 56 1.50e-05 TCAGCCCTAA GTGACTCAC CCGAGGTTCC chr17:66951944-66952444 + 22 1.50e-05 TGTCAGGTAG GTGACTCAC AGTGAATAAA chr3:71982523-71983023 + 45 1.50e-05 gctgctgtgc gtgactcac tttatggcta chr1:175470934-175471434 - 14 1.50e-05 CTTCAGTCTT GTGACTCAT AAGACAGTTC chr20:24773601-24774101 - 20 1.50e-05 GCAGATACTT GTGACTCAT TTTTTAAAAA chr7:101138383-101138883 + 49 1.50e-05 CAATTACAGG GTGACTCAC AGCCGCATTG chr14:22536840-22537340 - 43 1.50e-05 AGAGTCTTGG GTGACTCAC GCCTGACTCA chr3:100002804-100003304 + 65 1.50e-05 TGATGTCTGT GTGACTCAC ATACTGAGGT chr13:39148423-39148923 - 17 1.50e-05 CAAATGGCCA ATGACTCAT TGATTTGAGC chr10:126481192-12648169 + 57 1.50e-05 CTCATGTCAA GTGACTCAC ATCATTTAAC chr6:82144164-82144664 - 8 1.50e-05 CTTACATTGT GTGACTCAT TGCAGTC chr1:236097023-236097523 + 12 2.26e-05 gcggccaggg gTGACTCAG AATGgagcag chr1:232704763-232705263 + 20 2.26e-05 CAGCTGCTAA GTGACTCAG CACTGCATCA chr22:35371841-35372341 - 37 2.26e-05 CACCGGGACC GTGACTCAG CGAAAACAGA chr5:68932755-68933255 - 92 2.26e-05 . GTGACTCAG CAGGTTTGGA chr9:1458396-1458896 - 77 2.26e-05 ATTTTTCCTC ATGACTCAG CCACCAAGTG chr7:152709601-152710101 + 54 2.26e-05 ACAGACTAGT GTGACTCAG CCTGATGTCA chr6:31777143-31777643 + 18 2.26e-05 AGTAAGCAGC GTGACTCAG GCCTGGCACA chr19:13731092-13731592 - 8 2.26e-05 GTTTGCAGAA ATGACTCAG TGGTGAC chr5:116766476-116766976 + 51 2.26e-05 GATAGAAACA ATGACTCAG CCAGTATTAC chr1:227934679-227935179 - 40 2.26e-05 ACCTGAGTCT GTGACTCAG GCTGTCTATG chr6:35694382-35694882 + 74 2.26e-05 gagtcatctg atgactcag agctggacta chr19:40219744-40220244 - 69 2.26e-05 TCATGATCAC ATGACTCAG AGTCTAATGG chr16:89995684-89996184 + 42 2.26e-05 CTCTGCAGAG ATGACTCAG CACTGCCCCT chr15:71747486-71747986 + 41 2.26e-05 gcaaaacttt atgactcag aaacaaacca chr16:89994822-89995322 + 2 2.26e-05 G ATGACTCAG CACCGCCTCT chr17:81094764-81095264 - 29 2.26e-05 GCAGCATGCG GTGACTCAG AGTGGGGGAG chr10:29784310-29784810 - 7 2.26e-05 TGTGAAGCCG GTGACTCAG GATAAC chr11:9759596-9760096 - 76 2.26e-05 GGAGGTAGCT ATGACTCAG TGGCACGCGG chr22:31102210-31102710 - 14 3.02e-05 CTACCTGTCA CTGACTCAC ATTCCTTCAG chr8:630820-631320 + 82 3.02e-05 GTGGACAGAG CTGACTCAC ACCCTCCTAT chr14:98909168-98909668 + 24 3.02e-05 AGtgccacgg ctgactcat aggcgacttt chr18:48944572-48945072 + 73 3.02e-05 TAGGCCACTC CTGACTCAC GCAACACTAA chr4:1043597-1044097 + 69 3.02e-05 TGGTCACTTG CTGACTCAC GGACACCCCC chr13:110965189-11096568 + 39 3.02e-05 ctactccatc ctgactcat tctccaccct chr17:1080693-1081193 - 60 3.02e-05 GCTTCTCATC CTGACTCAC TCGATGACGT chr3:23685712-23686212 - 40 3.02e-05 AACTCATGCC CTGACTCAC CAAGTTGGAC chr15:95246924-95247424 - 56 3.02e-05 ATAGTCATAG CTGACTCAC ACATACTTTA chr20:53611435-53611935 + 80 3.41e-05 TACCGCCAAG ctgactcag aaagaagggt chr1:151311489-151311989 - 79 3.41e-05 CTCCCCGGAG CTGACTCAG TGTGAGTGAC chr17:3890077-3890577 + 60 3.41e-05 GGGCTGTTGC CTGACTCAG CACAGCTACC chr5:175378418-175378918 - 58 4.86e-05 TTTATGGACT ATGACTAAC CAGTGGAACT chr6:141326362-141326862 + 58 4.86e-05 gatgatgcgg atgactaat aggcaagtaa chr5:136123153-136123653 - 80 4.86e-05 TATTTGTATA ATGACTAAT GCTTCTGTGG chr4:102780381-102780881 + 63 4.86e-05 attagaagtt atgactaat aagtgtaaca chr19:32373716-32374216 - 50 7.10e-05 ATCATGCCCA GTGACTAAG CAAGCCTTTC chr5:127206226-127206726 + 41 7.10e-05 TGTTTACATT ATGACACAT AGACCATTCA chr21:29217686-29218186 + 56 7.10e-05 CATCATATTG ATGACACAT TTATGCGCCT chr17:71438635-71439135 - 72 7.10e-05 AGTCAAGAAT GTGACACAT GGCGAGACAC chr5:76790541-76791041 - 57 7.10e-05 TGCTATTGGA ATGACTAAG AGCTGCATCA chr19:33293228-33293728 - 39 7.10e-05 AGCAATTACC GTGACTAAG CATGACAGAT chr6:134109445-134109945 - 79 7.10e-05 AAATCGCCTA ATGACACAT TTCTCTTAAC chr20:44728795-44729295 - 7 7.10e-05 TCTCAGATGG GTGACTAAG TCCTCT chr8:37302606-37303106 - 73 9.32e-05 AAGATATATT GTGACACAG TAATGACCTT chr3:25582174-25582674 - 13 9.32e-05 GGCTGTCAGA ATGACACAG CATTGCTTGC chr9:136109548-136110048 + 63 9.32e-05 CAGAGCCCGT GTGACACAG CTGCCGGCAT chr12:7168156-7168656 + 63 9.32e-05 gaaccttatc atgacttac aaagaccatt chr13:41268710-41269210 + 48 9.32e-05 tcctattctt gtgacttac acagaccatt chr15:72375814-72376314 + 27 9.32e-05 CGGCGCCCCC GTGACTTAT CGGCGAATCA chr2:174510533-174511033 + 56 9.32e-05 gaaccttaac gtgacttac acagaccatt chr13:49877583-49878083 - 24 9.32e-05 CAGACAACGT ATGACTTAC ACAGACCATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGACTCAB MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:68384280-68384780 1.5e-05 27_[+4]_64 chr5:1950711-1951211 1.5e-05 5_[-4]_86 chr10:87586167-87586667 1.5e-05 20_[-4]_71 chr17:13420856-13421356 1.5e-05 10_[-4]_81 chr4:72112458-72112958 1.5e-05 25_[-4]_66 chr2:172253133-172253633 1.5e-05 76_[-4]_15 chr11:36149644-36150144 1.5e-05 27_[+4]_64 chr13:42720362-42720862 1.5e-05 29_[-4]_62 chr22:40711475-40711975 1.5e-05 26_[-4]_65 chr10:125973193-12597369 1.5e-05 85_[+4]_6 chr16:9047735-9048235 1.5e-05 82_[-4]_9 chr20:62088387-62088887 1.5e-05 66_[+4]_25 chr17:40314516-40315016 1.5e-05 69_[-4]_22 chr16:4944746-4945246 1.5e-05 19_[-4]_72 chr11:3993989-3994489 1.5e-05 65_[-4]_26 chr1:41870043-41870543 1.5e-05 86_[-4]_5 chr12:45415293-45415793 1.5e-05 51_[-4]_40 chr1:236905044-236905544 1.5e-05 40_[+4]_51 chr13:100392675-10039317 1.5e-05 19_[+4]_72 chr6:119308193-119308693 1.5e-05 73_[-4]_18 chr7:158109493-158109993 1.5e-05 37_[-4]_54 chr6:43809245-43809745 1.5e-05 22_[+4]_69 chr10:33134002-33134502 1.5e-05 44_[+4]_47 chr5:141658026-141658526 1.5e-05 19_[-4]_72 chr13:42762888-42763388 1.5e-05 83_[-4]_8 chrX:13647569-13648069 1.5e-05 90_[-4]_1 chr5:133240441-133240941 1.5e-05 29_[+4]_62 chr10:11539268-11539768 1.5e-05 3_[-4]_88 chr15:58332089-58332589 1.5e-05 51_[+4]_40 chr1:212558822-212559322 1.5e-05 3_[-4]_88 chr6:14743919-14744419 1.5e-05 29_[+4]_62 chr3:5023262-5023762 1.5e-05 80_[+4]_11 chr20:1415944-1416444 1.5e-05 50_[+4]_41 chr1:225508453-225508953 1.5e-05 6_[+4]_85 chr10:63707203-63707703 1.5e-05 37_[-4]_54 chr20:25237761-25238261 1.5e-05 7_[+4]_84 chr1:153566437-153566937 1.5e-05 55_[+4]_36 chr17:66951944-66952444 1.5e-05 21_[+4]_70 chr3:71982523-71983023 1.5e-05 44_[+4]_47 chr1:175470934-175471434 1.5e-05 13_[-4]_78 chr20:24773601-24774101 1.5e-05 19_[-4]_72 chr7:101138383-101138883 1.5e-05 48_[+4]_43 chr14:22536840-22537340 1.5e-05 42_[-4]_49 chr3:100002804-100003304 1.5e-05 64_[+4]_27 chr13:39148423-39148923 1.5e-05 16_[-4]_75 chr10:126481192-12648169 1.5e-05 56_[+4]_35 chr6:82144164-82144664 1.5e-05 7_[-4]_84 chr1:236097023-236097523 2.3e-05 11_[+4]_80 chr1:232704763-232705263 2.3e-05 19_[+4]_72 chr22:35371841-35372341 2.3e-05 36_[-4]_55 chr5:68932755-68933255 2.3e-05 91_[-4] chr9:1458396-1458896 2.3e-05 76_[-4]_15 chr7:152709601-152710101 2.3e-05 53_[+4]_38 chr6:31777143-31777643 2.3e-05 17_[+4]_74 chr19:13731092-13731592 2.3e-05 7_[-4]_84 chr5:116766476-116766976 2.3e-05 50_[+4]_41 chr1:227934679-227935179 2.3e-05 39_[-4]_52 chr6:35694382-35694882 2.3e-05 73_[+4]_18 chr19:40219744-40220244 2.3e-05 68_[-4]_23 chr16:89995684-89996184 2.3e-05 41_[+4]_50 chr15:71747486-71747986 2.3e-05 40_[+4]_51 chr16:89994822-89995322 2.3e-05 1_[+4]_90 chr17:81094764-81095264 2.3e-05 28_[-4]_63 chr10:29784310-29784810 2.3e-05 6_[-4]_85 chr11:9759596-9760096 2.3e-05 75_[-4]_16 chr22:31102210-31102710 3e-05 13_[-4]_78 chr8:630820-631320 3e-05 81_[+4]_10 chr14:98909168-98909668 3e-05 23_[+4]_68 chr18:48944572-48945072 3e-05 72_[+4]_19 chr4:1043597-1044097 3e-05 68_[+4]_23 chr13:110965189-11096568 3e-05 38_[+4]_53 chr17:1080693-1081193 3e-05 59_[-4]_32 chr3:23685712-23686212 3e-05 39_[-4]_52 chr15:95246924-95247424 3e-05 55_[-4]_36 chr20:53611435-53611935 3.4e-05 79_[+4]_12 chr1:151311489-151311989 3.4e-05 78_[-4]_13 chr17:3890077-3890577 3.4e-05 59_[+4]_32 chr5:175378418-175378918 4.9e-05 57_[-4]_34 chr6:141326362-141326862 4.9e-05 57_[+4]_34 chr5:136123153-136123653 4.9e-05 79_[-4]_12 chr4:102780381-102780881 4.9e-05 62_[+4]_29 chr19:32373716-32374216 7.1e-05 49_[-4]_42 chr5:127206226-127206726 7.1e-05 40_[+4]_51 chr21:29217686-29218186 7.1e-05 55_[+4]_36 chr17:71438635-71439135 7.1e-05 71_[-4]_20 chr5:76790541-76791041 7.1e-05 56_[-4]_35 chr19:33293228-33293728 7.1e-05 38_[-4]_53 chr6:134109445-134109945 7.1e-05 78_[-4]_13 chr20:44728795-44729295 7.1e-05 6_[-4]_85 chr8:37302606-37303106 9.3e-05 72_[-4]_19 chr3:25582174-25582674 9.3e-05 12_[-4]_79 chr9:136109548-136110048 9.3e-05 62_[+4]_29 chr12:7168156-7168656 9.3e-05 62_[+4]_29 chr13:41268710-41269210 9.3e-05 47_[+4]_44 chr15:72375814-72376314 9.3e-05 26_[+4]_65 chr2:174510533-174511033 9.3e-05 55_[+4]_36 chr13:49877583-49878083 9.3e-05 23_[-4]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGACTCAB MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RTGACTCAB width=9 seqs=97 chr1:68384280-68384780 ( 28) GTGACTCAT 1 chr5:1950711-1951211 ( 6) ATGACTCAC 1 chr10:87586167-87586667 ( 21) ATGACTCAT 1 chr17:13420856-13421356 ( 11) ATGACTCAT 1 chr4:72112458-72112958 ( 26) ATGACTCAC 1 chr2:172253133-172253633 ( 77) GTGACTCAC 1 chr11:36149644-36150144 ( 28) ATGACTCAT 1 chr13:42720362-42720862 ( 30) GTGACTCAT 1 chr22:40711475-40711975 ( 27) ATGACTCAT 1 chr10:125973193-12597369 ( 86) ATGACTCAC 1 chr16:9047735-9048235 ( 83) ATGACTCAT 1 chr20:62088387-62088887 ( 67) ATGACTCAT 1 chr17:40314516-40315016 ( 70) GTGACTCAC 1 chr16:4944746-4945246 ( 20) ATGACTCAC 1 chr11:3993989-3994489 ( 66) ATGACTCAT 1 chr1:41870043-41870543 ( 87) GTGACTCAT 1 chr12:45415293-45415793 ( 52) ATGACTCAC 1 chr1:236905044-236905544 ( 41) ATGACTCAT 1 chr13:100392675-10039317 ( 20) GTGACTCAC 1 chr6:119308193-119308693 ( 74) GTGACTCAT 1 chr7:158109493-158109993 ( 38) GTGACTCAT 1 chr6:43809245-43809745 ( 23) GTGACTCAC 1 chr10:33134002-33134502 ( 45) ATGACTCAC 1 chr5:141658026-141658526 ( 20) ATGACTCAT 1 chr13:42762888-42763388 ( 84) ATGACTCAC 1 chrX:13647569-13648069 ( 91) ATGACTCAT 1 chr5:133240441-133240941 ( 30) ATGACTCAT 1 chr10:11539268-11539768 ( 4) GTGACTCAT 1 chr15:58332089-58332589 ( 52) GTGACTCAC 1 chr1:212558822-212559322 ( 4) GTGACTCAC 1 chr6:14743919-14744419 ( 30) GTGACTCAC 1 chr3:5023262-5023762 ( 81) GTGACTCAC 1 chr20:1415944-1416444 ( 51) GTGACTCAT 1 chr1:225508453-225508953 ( 7) GTGACTCAC 1 chr10:63707203-63707703 ( 38) ATGACTCAT 1 chr20:25237761-25238261 ( 8) GTGACTCAT 1 chr1:153566437-153566937 ( 56) GTGACTCAC 1 chr17:66951944-66952444 ( 22) GTGACTCAC 1 chr3:71982523-71983023 ( 45) GTGACTCAC 1 chr1:175470934-175471434 ( 14) GTGACTCAT 1 chr20:24773601-24774101 ( 20) GTGACTCAT 1 chr7:101138383-101138883 ( 49) GTGACTCAC 1 chr14:22536840-22537340 ( 43) GTGACTCAC 1 chr3:100002804-100003304 ( 65) GTGACTCAC 1 chr13:39148423-39148923 ( 17) ATGACTCAT 1 chr10:126481192-12648169 ( 57) GTGACTCAC 1 chr6:82144164-82144664 ( 8) GTGACTCAT 1 chr1:236097023-236097523 ( 12) GTGACTCAG 1 chr1:232704763-232705263 ( 20) GTGACTCAG 1 chr22:35371841-35372341 ( 37) GTGACTCAG 1 chr5:68932755-68933255 ( 92) GTGACTCAG 1 chr9:1458396-1458896 ( 77) ATGACTCAG 1 chr7:152709601-152710101 ( 54) GTGACTCAG 1 chr6:31777143-31777643 ( 18) GTGACTCAG 1 chr19:13731092-13731592 ( 8) ATGACTCAG 1 chr5:116766476-116766976 ( 51) ATGACTCAG 1 chr1:227934679-227935179 ( 40) GTGACTCAG 1 chr6:35694382-35694882 ( 74) ATGACTCAG 1 chr19:40219744-40220244 ( 69) ATGACTCAG 1 chr16:89995684-89996184 ( 42) ATGACTCAG 1 chr15:71747486-71747986 ( 41) ATGACTCAG 1 chr16:89994822-89995322 ( 2) ATGACTCAG 1 chr17:81094764-81095264 ( 29) GTGACTCAG 1 chr10:29784310-29784810 ( 7) GTGACTCAG 1 chr11:9759596-9760096 ( 76) ATGACTCAG 1 chr22:31102210-31102710 ( 14) CTGACTCAC 1 chr8:630820-631320 ( 82) CTGACTCAC 1 chr14:98909168-98909668 ( 24) CTGACTCAT 1 chr18:48944572-48945072 ( 73) CTGACTCAC 1 chr4:1043597-1044097 ( 69) CTGACTCAC 1 chr13:110965189-11096568 ( 39) CTGACTCAT 1 chr17:1080693-1081193 ( 60) CTGACTCAC 1 chr3:23685712-23686212 ( 40) CTGACTCAC 1 chr15:95246924-95247424 ( 56) CTGACTCAC 1 chr20:53611435-53611935 ( 80) CTGACTCAG 1 chr1:151311489-151311989 ( 79) CTGACTCAG 1 chr17:3890077-3890577 ( 60) CTGACTCAG 1 chr5:175378418-175378918 ( 58) ATGACTAAC 1 chr6:141326362-141326862 ( 58) ATGACTAAT 1 chr5:136123153-136123653 ( 80) ATGACTAAT 1 chr4:102780381-102780881 ( 63) ATGACTAAT 1 chr19:32373716-32374216 ( 50) GTGACTAAG 1 chr5:127206226-127206726 ( 41) ATGACACAT 1 chr21:29217686-29218186 ( 56) ATGACACAT 1 chr17:71438635-71439135 ( 72) GTGACACAT 1 chr5:76790541-76791041 ( 57) ATGACTAAG 1 chr19:33293228-33293728 ( 39) GTGACTAAG 1 chr6:134109445-134109945 ( 79) ATGACACAT 1 chr20:44728795-44729295 ( 7) GTGACTAAG 1 chr8:37302606-37303106 ( 73) GTGACACAG 1 chr3:25582174-25582674 ( 13) ATGACACAG 1 chr9:136109548-136110048 ( 63) GTGACACAG 1 chr12:7168156-7168656 ( 63) ATGACTTAC 1 chr13:41268710-41269210 ( 48) GTGACTTAC 1 chr15:72375814-72376314 ( 27) GTGACTTAT 1 chr2:174510533-174511033 ( 56) GTGACTTAC 1 chr13:49877583-49878083 ( 24) ATGACTTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGACTCAB MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 9 n= 55016 bayes= 10.2545 E= 1.2e-050 75 -104 87 -1324 -1324 -1324 -1324 202 -1324 -1324 198 -1324 202 -1324 -1324 -1324 -1324 198 -1324 -1324 -177 -1324 -1324 192 -158 177 -1324 -225 202 -1324 -1324 -1324 -1324 51 18 51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGACTCAB MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 9 nsites= 97 E= 1.2e-050 0.412371 0.123711 0.463918 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.072165 0.000000 0.000000 0.927835 0.082474 0.865979 0.000000 0.051546 1.000000 0.000000 0.000000 0.000000 0.000000 0.360825 0.288660 0.350515 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGACTCAB MEME-4 regular expression -------------------------------------------------------------------------------- [GA]TGACTCA[CTG] -------------------------------------------------------------------------------- Time 1474.07 secs. ******************************************************************************** ******************************************************************************** MOTIF SSGCKSVSSSYBSCGSCSSSGC MEME-5 width = 22 sites = 106 llr = 1082 E-value = 4.2e-050 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSGCKSVSSSYBSCGSCSSSGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::1::2:1:::111::::::: pos.-specific C 4428263544443813766417 probability G 5471543455236185233592 matrix T 121:3:111142:::211:1:1 bits 2.0 1.8 1.6 1.4 * Relative 1.2 * * * Entropy 1.0 * * ** * (14.7 bits) 0.8 ** * *** ** ** 0.6 * ** * * *** ****** 0.4 ****** * * ********** 0.2 ********************** 0.0 ---------------------- Multilevel GGGCGCGCGGCCGCGGCCCGGC consensus CCC TGCGCCTGC C GGC G sequence A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGCKSVSSSYBSCGSCSSSGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr1:227946599-227947099 + 40 4.77e-10 AACAGGTGAC CGGCGGAGGGCGGCGGCCCGGC TGAGGGAGCG chr11:118436069-11843656 + 75 1.14e-09 ACAGATTGCG GGGCTGGCGGGCGCGGCCCGGC GCTC chr5:172771123-172771623 + 72 2.46e-09 Tccgctcgcc gcgcgctggctcgcggcccggc ccccgcc chr1:941653-942153 - 30 3.91e-09 GCGGTAATTA CTGCGCGGGGCGCCGGCCCCGC CTGCTCCCCT chr16:1705899-1706399 + 3 4.91e-09 CC CTGCGCCCCCTGGCGGCGCGGC TGCGGCGGGA chr19:35545449-35545949 - 63 1.39e-08 TCATGATGCC GGCCGCCCGGTCCCGCCCGCGC GGGGATCGCG chr19:37371021-37371521 - 15 1.69e-08 CCTTGACTTC CCGCTCCCGCCCGGGGCCCGGC CCCACTCACC chr5:175796798-175797298 + 47 2.97e-08 AGCACTGCAG CGGCGGACAGCGGCGGCCGGGC GGGCTCCTCC chr7:141551101-141551601 + 12 2.97e-08 CCGAACTGGC CCGCGCGCGCTCGCAGCCCCGC GGCGGAACCC chr1:27341720-27342220 - 15 2.97e-08 TGGACTCCCA GCGCCCGGGGGTGCGCCCCCGC AGCCGACTGG chr6:79078064-79078564 + 69 3.57e-08 GGCTCGGCCC CGGCTCTGGCCCGCGCCCCCGC CCCCCGGCGC chr19:35269289-35269789 - 14 5.08e-08 CCCCAGCCCT CCCCGGGCGCGGCCGGCCCGGC AAGCACTCAC chr17:82418261-82418761 - 44 5.08e-08 TCCCCGGGCC TGGCGCCCGCGTCCGGCCCGGC TCCGCGGCGG chr1:1692931-1693431 + 67 6.04e-08 CGTTGGTTCC GCCCGGGCGGTTCCGCCCGGGC TGTTCCACCA chr15:73992126-73992626 + 1 7.14e-08 . GCGCGGCCACCCGCGGCGGCGC GGGCGCAGGA chr19:13880026-13880526 - 49 7.14e-08 GTGACGTCTC TGGCTCCGCCGGGCGGCCCCGC TGGGACCCAG chr19:10416591-10417091 - 31 8.45e-08 CAGTGCCCCA GGGCTCCCCCTGCCGGTCGGGC CTAGAACCCG chr11:65919133-65919633 - 45 1.37e-07 CTGGGTCCTG GTGCCGCCCGCTCCGCCCCCGC CGTTTCCCGC chr14:90396772-90397272 + 38 1.60e-07 ATATATCGCG GGGCGCAGACTCGCGCTCCGGC AGTGGTGCTG chr1:146035500-146036000 + 22 1.86e-07 aggattcggc gctctcaccgccgcggcccggg ttcgattccc chr19:17334506-17335006 + 69 2.91e-07 AGGAGACAAA GGCCGCGCCCGCCCGCGCCGGC CTCGGTCCTC chr1:228165577-228166077 + 71 3.37e-07 CGAGGCGCCA CTCCGGGGCGCGGCGGCCCGGT CTGGCGCT chr1:27154790-27155290 - 43 3.88e-07 AGCTGGGCCG GGGCGGAGCGCCGCGTCGCGCC AGGGCCGCGA chr3:53347434-53347934 + 38 4.47e-07 CTGGTCCGCC GCGCGCACGCTCCGGGCGCCGG GTTCCGGCGT chr19:37655817-37656317 + 77 5.89e-07 TGTTTGCTGA GTGACGGCCGCCGCGCCCCCGC GT chr20:1466689-1467189 + 48 6.74e-07 CCCAGCAGCT GGGAGCCCGCCCGCAGCCCCGC CCCACGCGGT chr19:982624-983124 + 66 6.74e-07 CCACCTGGCG GCCAGCGGGGCTGCGGCGCCGC ACGCTCTGGC chr10:63465811-63466311 - 16 7.70e-07 CCTCCCGCGG CTGCTGCCCCGCCCGCGCCGGC GGAAGGAGAC chr6:43229183-43229683 - 9 8.79e-07 AGCTGGGAGC GCGGGGAGCCTGGCCGCCCGGC CCTGTACT chr17:79839707-79840207 - 10 8.79e-07 CCCATTCCGC CCCCTGCCGGCGGGGCCCGCGC GTCCCGGGG chr1:243850761-243851261 + 7 8.79e-07 GCGGAC GCGCGCGCCGCCAGGCCCCGGG CGTCTCCTCC chr13:113208559-11320905 + 22 1.00e-06 ACCTGGGGAC CGGCTCGGCGACGCGCTCGGGC TGAGGGGGCC chr15:72231139-72231639 - 2 1.00e-06 GGCAACCTGC CCGCGCGTTCCGCCGCCGCCGC C chr19:14206655-14207155 + 25 1.14e-06 GCGCAAAACC CGGCCCGGAGTCGCCGCCCGGG ACTGGCCGCC chr17:30708649-30709149 - 77 1.14e-06 TC CGGCCCGGAGTCGCCGCCCGGG ACTGGCCGCC chr14:104815810-10481631 + 46 1.46e-06 CAGTCACGTG GGGCCGCGAGTGGCGCCGCTGC CGGAAGCGCC chr9:11167-11667 + 30 1.66e-06 tggtggccac cgccccctgctggcgccggggc actgcagggt chr17:7717099-7717599 - 78 1.66e-06 A TGGCGCCGGGCGCCAGGCCGGC GAGGGATATT chr5:139517842-139518342 + 33 1.66e-06 TGACTTCATC CGGCCCGGGGCCAAGGCCCGGC CTCCGCTAGA chr11:120335932-12033643 - 49 1.87e-06 GATCCCTCCG CCGCTCAGGGCCGCGCTCTCGC CCTTGAACGG chr3:12556777-12557277 + 54 1.87e-06 GAGGGGcggc gtgcgccggcgtgcgccggcgt gACGCGGCTA chr19:37907145-37907645 - 73 2.11e-06 CCGCCC GCGCTGACCCTCGGGGTCCGGG CAGCCACCGA chr3:51538397-51538897 + 65 2.38e-06 TCCCGTCCGT GCGGTCGGGCGCGCGGGCCGGG AGGGGGACGC chr3:41199198-41199698 - 16 2.67e-06 CACCGGCGCA GCGCGGAGCGTTCCGCCGCGCG AGGACAAGGG chr21:44939685-44940185 + 62 3.00e-06 CGGGTACTTC CGGCGGCCGCGGGGCTCCCGGC AGCCGCGGCT chr10:102918333-10291883 + 68 3.37e-06 CCGGGGGATC CTGCAGgcggctgcggggcggc tgctgccgct chr1:93078930-93079430 + 64 3.77e-06 GTGTTCCTCC GCGCTCGCCGCGCAGTCCCTGC CCCCCCGCGG chr12:49060599-49061099 - 79 4.22e-06 . TGCCGGCCCGGCGCGGTCGGGG TTAACCCGGA chr17:18087626-18088126 - 2 4.71e-06 ACTATCGGTT CCGCCCGCTGGGCCGGCCAGGC T chr1:234478804-234479304 + 46 4.71e-06 CCCCAAGCAG GGCCCGGGGGTCCCGGCTCTGC GAGAGCAGCG chr8:22109469-22109969 + 47 4.71e-06 CTTTCCTGCA GGGCGCGTTGCGCCGCCGGGGT AGGCGACGGT chr3:5121948-5122448 + 44 4.71e-06 CCACCAGGTG GCGATGCCAGCGGCGGGCGGGC CTGGCCGGAT chr17:59619589-59620089 + 6 5.26e-06 AATTC CTGCGCCCGCCGCGCGCGGCGC TCCGTGGAGG chr1:1374993-1375493 + 65 5.26e-06 TTCCTACGCA CAGCGCCCGCTGGCGTCCTCGC GGCCCCCGAT chr19:58380532-58381032 + 74 6.52e-06 AGGACCGGAA GTGCGCGGCGTCACGCCTCTGC CCCGG chr1:28552731-28553231 - 32 7.25e-06 TCTGCGCAGG CTCCCGAGCGCAGCGGCCCGGG TCGGGCAGTG chr19:1652530-1653030 - 74 8.04e-06 CCGAC CGCCTCCTCTGCGCGTCCCCGC TCCCAGGCTC chr11:66421518-66422018 + 46 8.92e-06 GCTGCCCATG GTGCTGACGGCTGCGCCGGCCG TGTATGGCTC chr1:244652996-244653496 - 37 1.09e-05 GGGCCGGAGG CCGCTCTCACCCCCGCGGGCGC TTCAGGGGGC chr12:991165-991665 + 60 1.09e-05 ACCCAGCTTC TTGCTCACGGCCCGGGCTGGGC TGGGCAGGGC chr13:113296837-11329733 + 49 1.33e-05 GGGTCACGTG CCGCTGCGGGTCACGTGTCGGC CTGCATCACG chr16:1971732-1972232 - 74 1.33e-05 CCACT GTGACGTCCCCGCCGGCGCCGC GCACTTGGCG chr12:12266856-12267356 - 13 1.47e-05 GGGGCTCGTT GCGCGCAGGGACACGGTCGCGG CGACCCTAGG chr12:123601833-12360233 + 21 1.62e-05 CGAAGTTCCC GGCCGGCCGCTGGAGCTGCGGG AAGCGGAAGT chr20:1118283-1118783 + 58 1.78e-05 TTTCAGTGCT GCGCTCGCGTTGCCAACCCGGC GCGCCTCACG chr1:206612178-206612678 - 71 1.96e-05 TTTCCAGC CGGGCCCTTTTCGCGGCCGGGC CCCAGCATGG chr7:102572359-102572859 - 47 2.15e-05 GAGCCGATCC TTGCGCGGGTTTGCCCCGCCGG AGTAATCCGG chr2:55419739-55420239 + 4 2.15e-05 AGG GAGCGCGCTGCTCCCTCCGCGC CGATATCCTT chr12:54379535-54380035 - 44 2.15e-05 GAGCCTGGTT CTCCGGCAGGTGGCGGGCGCGG GTAGGAGGTG chr9:137422965-137423465 + 54 2.36e-05 AGGCCAGCGC GGGCGGGGCGAGGAAGCCGGGC GCACAAAGCT chr1:32817088-32817588 + 8 2.36e-05 CCCTTCC TGGGTCACCGTCGCCGCCGCGT GCCGGGAACT chr6:143450490-143450990 - 14 2.58e-05 GGGGTCCCGG GCCCGCCGCGTTCCGCTGCCCG CGCTCCTCCT chr12:124914596-12491509 + 66 2.83e-05 GAGCAGCGGG CCGCTGTCCTGAGCGTCCGGGC GGAAGGATCA chr1:212558822-212559322 - 77 3.09e-05 GC TGCCTCGGCCTCCCCGTGGCGC GCTTACGTCA chr19:35612522-35613022 + 50 3.37e-05 TGAGGGAGGC GGTGTCGCCGCCGCGGCGCTGT CATGGAGCTA chr19:44212433-44212933 - 51 3.37e-05 GCCCTCGGCC TCTCGGCCTCCGCCGCGGCCGC GACCTCTCCA chr16:30957663-30958163 - 10 3.68e-05 GGGACCCACG GGGCCGAGGGTAGCGGCTTCGC CTCGGCCGG chr15:101724085-10172458 - 60 3.68e-05 GGCCCTGGCG GCGGAGGCCGTGGCGTCGCGCC TGGAGCGGCA chr15:65610861-65611361 - 11 4.01e-05 CACGGGGTGA GTGGGGAGGCCGAGGGCCCGGG ACTGCCTTTC chr3:193240663-193241163 - 72 4.01e-05 GCACCAG GCGCTGTGCTAGGCGCCGCGGT TATAAAGATA chr17:75012376-75012876 - 67 4.01e-05 CGACTGCTTC CGGCGGGCGCTTCCTCCCCGCG GTCCGCAAAC chr5:112160534-112161034 + 11 4.37e-05 TTCTCCCTCC GGCCACACGGCGGCGTCTCGCC ATAGCGCAGC chr19:1383567-1384067 + 76 4.76e-05 CGCATGCGCT CCGAGCCGCTTTGGGCGGCGGC CCC chr9:132944411-132944911 - 33 4.76e-05 CTCTTTTTCG TGGCGGAGGCCGCCGTCGGCCT TGGCCCTTTC chr12:103956936-10395743 - 38 4.76e-05 TCCGGCCTGC TCGCCGTCCGCTCCGTCCGCCC TTAGACCTGT chr16:181302-181802 - 68 5.17e-05 AGGTACCGGC TCGCGCCGGGAGGGGGCGCTGT TCCCTAACCT chr19:38849521-38850021 + 18 5.17e-05 ctcctccacc gccaccgccgccgcctccgtgc tggtcgccgg chr1:63523030-63523530 - 23 5.17e-05 GGGAGGATGT TTCCGCCCGGCCGCGGTGGGCT TGACGCAACG chr1:225474859-225475359 - 50 5.62e-05 ATGCTCGGCA GCGCGCCCCGTCCAACGCGGGT GCGCAGCGCC chr12:122895959-12289645 - 35 5.62e-05 GCGACACTTA CGTCACGTCCGCCCGCCCGCGC GGTGATGACG chr20:58650936-58651436 - 9 6.61e-05 CGCAAGCCTT GCTCGCAACGTTCCGGGCGCGG GAGCTCCC chr1:155860284-155860784 + 6 6.61e-05 TTCTG GGCCTCCTGGCAGCGCCGACGC TCTCCTTCCG chrX:73944028-73944528 - 36 7.16e-05 AGCCAAACAG GCCCGGCGCCCAGCCGTCGTGC ACTACCTAAA chr1:205122027-205122527 + 40 7.16e-05 GTTGTGTGTT CAGCGGCGTTGTCCGGGCGGGC TACCTCAGAC chr13:44917687-44918187 - 47 7.16e-05 TTCACCCAGG CGGCCCGGGTTCGACTCCCGGT GTGGGAACGC chr8:19817099-19817599 - 25 7.16e-05 CTCCTCCCCT TGGCTCCTCGTTACCGCCCGGT CCCCTCCTCT chr17:82494517-82495017 + 46 7.75e-05 gggttatggg cccagcacgcttccgctgcgcc actctgctGG chr8:33472977-33473477 - 1 1.05e-04 CGCCGGAACG CGCCCCGAGCTCGCCCGCGCGG chr5:177404072-177404572 + 25 1.14e-04 AGGGGACACC GGGGTCGGAGGCGCCGCCTGGG TTGGGGTCTG chr13:52194209-52194709 + 34 1.14e-04 AACACATCCC CCGCGCTCTCCTCCGTTTCCGG TCTGGCTTGT chr4:4541822-4542322 - 50 1.14e-04 CGGAACCTTT CTTCTCGCGTCGCCGTTGCCGG GGGGAGGCGT chr22:20117220-20117720 + 49 1.22e-04 GTTTTGAATC GCGGCGCGTTTCCCGCCGCTgg ggtcaggggt chr10:93702412-93702912 - 13 1.42e-04 AGCACAAGGT CGGCGCACTCGGGGGACGGTGC CATTTAGATG chr19:36797459-36797959 + 77 1.52e-04 CACATCGGTC CACCGCACTCGTGGGCGCCCGC AT chr16:2154973-2155473 - 65 2.01e-04 CTTTGAGGGC CGTCCGAACGCTGCAGGCCGGC CAGGTCCCTG chr1:42335114-42335614 + 15 2.15e-04 AAGTCCCTGC GCGGTCACGGTCGCTTCGACGC ACGCAGGATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGCKSVSSSYBSCGSCSSSGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:227946599-227947099 4.8e-10 39_[+5]_39 chr11:118436069-11843656 1.1e-09 74_[+5]_4 chr5:172771123-172771623 2.5e-09 71_[+5]_7 chr1:941653-942153 3.9e-09 29_[-5]_49 chr16:1705899-1706399 4.9e-09 2_[+5]_76 chr19:35545449-35545949 1.4e-08 62_[-5]_16 chr19:37371021-37371521 1.7e-08 14_[-5]_64 chr5:175796798-175797298 3e-08 46_[+5]_32 chr7:141551101-141551601 3e-08 11_[+5]_67 chr1:27341720-27342220 3e-08 14_[-5]_64 chr6:79078064-79078564 3.6e-08 68_[+5]_10 chr19:35269289-35269789 5.1e-08 13_[-5]_65 chr17:82418261-82418761 5.1e-08 43_[-5]_35 chr1:1692931-1693431 6e-08 66_[+5]_12 chr15:73992126-73992626 7.1e-08 [+5]_78 chr19:13880026-13880526 7.1e-08 48_[-5]_30 chr19:10416591-10417091 8.4e-08 30_[-5]_48 chr11:65919133-65919633 1.4e-07 44_[-5]_34 chr14:90396772-90397272 1.6e-07 37_[+5]_41 chr1:146035500-146036000 1.9e-07 21_[+5]_57 chr19:17334506-17335006 2.9e-07 68_[+5]_10 chr1:228165577-228166077 3.4e-07 70_[+5]_8 chr1:27154790-27155290 3.9e-07 42_[-5]_36 chr3:53347434-53347934 4.5e-07 37_[+5]_41 chr19:37655817-37656317 5.9e-07 76_[+5]_2 chr20:1466689-1467189 6.7e-07 47_[+5]_31 chr19:982624-983124 6.7e-07 65_[+5]_13 chr10:63465811-63466311 7.7e-07 15_[-5]_63 chr6:43229183-43229683 8.8e-07 8_[-5]_70 chr17:79839707-79840207 8.8e-07 9_[-5]_69 chr1:243850761-243851261 8.8e-07 6_[+5]_72 chr13:113208559-11320905 1e-06 21_[+5]_57 chr15:72231139-72231639 1e-06 1_[-5]_77 chr19:14206655-14207155 1.1e-06 24_[+5]_54 chr17:30708649-30709149 1.1e-06 76_[-5]_2 chr14:104815810-10481631 1.5e-06 45_[+5]_33 chr9:11167-11667 1.7e-06 29_[+5]_49 chr17:7717099-7717599 1.7e-06 77_[-5]_1 chr5:139517842-139518342 1.7e-06 32_[+5]_46 chr11:120335932-12033643 1.9e-06 48_[-5]_30 chr3:12556777-12557277 1.9e-06 53_[+5]_25 chr19:37907145-37907645 2.1e-06 72_[-5]_6 chr3:51538397-51538897 2.4e-06 64_[+5]_14 chr3:41199198-41199698 2.7e-06 15_[-5]_63 chr21:44939685-44940185 3e-06 61_[+5]_17 chr10:102918333-10291883 3.4e-06 67_[+5]_11 chr1:93078930-93079430 3.8e-06 63_[+5]_15 chr12:49060599-49061099 4.2e-06 78_[-5] chr17:18087626-18088126 4.7e-06 1_[-5]_77 chr1:234478804-234479304 4.7e-06 45_[+5]_33 chr8:22109469-22109969 4.7e-06 46_[+5]_32 chr3:5121948-5122448 4.7e-06 43_[+5]_35 chr17:59619589-59620089 5.3e-06 5_[+5]_73 chr1:1374993-1375493 5.3e-06 64_[+5]_14 chr19:58380532-58381032 6.5e-06 73_[+5]_5 chr1:28552731-28553231 7.2e-06 31_[-5]_47 chr19:1652530-1653030 8e-06 73_[-5]_5 chr11:66421518-66422018 8.9e-06 45_[+5]_33 chr1:244652996-244653496 1.1e-05 36_[-5]_42 chr12:991165-991665 1.1e-05 59_[+5]_19 chr13:113296837-11329733 1.3e-05 48_[+5]_30 chr16:1971732-1972232 1.3e-05 73_[-5]_5 chr12:12266856-12267356 1.5e-05 12_[-5]_66 chr12:123601833-12360233 1.6e-05 20_[+5]_58 chr20:1118283-1118783 1.8e-05 57_[+5]_21 chr1:206612178-206612678 2e-05 70_[-5]_8 chr7:102572359-102572859 2.1e-05 46_[-5]_32 chr2:55419739-55420239 2.1e-05 3_[+5]_75 chr12:54379535-54380035 2.1e-05 43_[-5]_35 chr9:137422965-137423465 2.4e-05 53_[+5]_25 chr1:32817088-32817588 2.4e-05 7_[+5]_71 chr6:143450490-143450990 2.6e-05 13_[-5]_65 chr12:124914596-12491509 2.8e-05 65_[+5]_13 chr1:212558822-212559322 3.1e-05 76_[-5]_2 chr19:35612522-35613022 3.4e-05 49_[+5]_29 chr19:44212433-44212933 3.4e-05 50_[-5]_28 chr16:30957663-30958163 3.7e-05 9_[-5]_69 chr15:101724085-10172458 3.7e-05 59_[-5]_19 chr15:65610861-65611361 4e-05 10_[-5]_68 chr3:193240663-193241163 4e-05 71_[-5]_7 chr17:75012376-75012876 4e-05 66_[-5]_12 chr5:112160534-112161034 4.4e-05 10_[+5]_68 chr19:1383567-1384067 4.8e-05 75_[+5]_3 chr9:132944411-132944911 4.8e-05 32_[-5]_46 chr12:103956936-10395743 4.8e-05 37_[-5]_41 chr16:181302-181802 5.2e-05 67_[-5]_11 chr19:38849521-38850021 5.2e-05 17_[+5]_61 chr1:63523030-63523530 5.2e-05 22_[-5]_56 chr1:225474859-225475359 5.6e-05 49_[-5]_29 chr12:122895959-12289645 5.6e-05 34_[-5]_44 chr20:58650936-58651436 6.6e-05 8_[-5]_70 chr1:155860284-155860784 6.6e-05 5_[+5]_73 chrX:73944028-73944528 7.2e-05 35_[-5]_43 chr1:205122027-205122527 7.2e-05 39_[+5]_39 chr13:44917687-44918187 7.2e-05 46_[-5]_32 chr8:19817099-19817599 7.2e-05 24_[-5]_54 chr17:82494517-82495017 7.8e-05 45_[+5]_33 chr8:33472977-33473477 0.00011 [-5]_78 chr5:177404072-177404572 0.00011 24_[+5]_54 chr13:52194209-52194709 0.00011 33_[+5]_45 chr4:4541822-4542322 0.00011 49_[-5]_29 chr22:20117220-20117720 0.00012 48_[+5]_30 chr10:93702412-93702912 0.00014 12_[-5]_66 chr19:36797459-36797959 0.00015 76_[+5]_2 chr16:2154973-2155473 0.0002 64_[-5]_14 chr1:42335114-42335614 0.00022 14_[+5]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGCKSVSSSYBSCGSCSSSGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSGCKSVSSSYBSCGSCSSSGC width=22 seqs=106 chr1:227946599-227947099 ( 40) CGGCGGAGGGCGGCGGCCCGGC 1 chr11:118436069-11843656 ( 75) GGGCTGGCGGGCGCGGCCCGGC 1 chr5:172771123-172771623 ( 72) GCGCGCTGGCTCGCGGCCCGGC 1 chr1:941653-942153 ( 30) CTGCGCGGGGCGCCGGCCCCGC 1 chr16:1705899-1706399 ( 3) CTGCGCCCCCTGGCGGCGCGGC 1 chr19:35545449-35545949 ( 63) GGCCGCCCGGTCCCGCCCGCGC 1 chr19:37371021-37371521 ( 15) CCGCTCCCGCCCGGGGCCCGGC 1 chr5:175796798-175797298 ( 47) CGGCGGACAGCGGCGGCCGGGC 1 chr7:141551101-141551601 ( 12) CCGCGCGCGCTCGCAGCCCCGC 1 chr1:27341720-27342220 ( 15) GCGCCCGGGGGTGCGCCCCCGC 1 chr6:79078064-79078564 ( 69) CGGCTCTGGCCCGCGCCCCCGC 1 chr19:35269289-35269789 ( 14) CCCCGGGCGCGGCCGGCCCGGC 1 chr17:82418261-82418761 ( 44) TGGCGCCCGCGTCCGGCCCGGC 1 chr1:1692931-1693431 ( 67) GCCCGGGCGGTTCCGCCCGGGC 1 chr15:73992126-73992626 ( 1) GCGCGGCCACCCGCGGCGGCGC 1 chr19:13880026-13880526 ( 49) TGGCTCCGCCGGGCGGCCCCGC 1 chr19:10416591-10417091 ( 31) GGGCTCCCCCTGCCGGTCGGGC 1 chr11:65919133-65919633 ( 45) GTGCCGCCCGCTCCGCCCCCGC 1 chr14:90396772-90397272 ( 38) GGGCGCAGACTCGCGCTCCGGC 1 chr1:146035500-146036000 ( 22) GCTCTCACCGCCGCGGCCCGGG 1 chr19:17334506-17335006 ( 69) GGCCGCGCCCGCCCGCGCCGGC 1 chr1:228165577-228166077 ( 71) CTCCGGGGCGCGGCGGCCCGGT 1 chr1:27154790-27155290 ( 43) GGGCGGAGCGCCGCGTCGCGCC 1 chr3:53347434-53347934 ( 38) GCGCGCACGCTCCGGGCGCCGG 1 chr19:37655817-37656317 ( 77) GTGACGGCCGCCGCGCCCCCGC 1 chr20:1466689-1467189 ( 48) GGGAGCCCGCCCGCAGCCCCGC 1 chr19:982624-983124 ( 66) GCCAGCGGGGCTGCGGCGCCGC 1 chr10:63465811-63466311 ( 16) CTGCTGCCCCGCCCGCGCCGGC 1 chr6:43229183-43229683 ( 9) GCGGGGAGCCTGGCCGCCCGGC 1 chr17:79839707-79840207 ( 10) CCCCTGCCGGCGGGGCCCGCGC 1 chr1:243850761-243851261 ( 7) GCGCGCGCCGCCAGGCCCCGGG 1 chr13:113208559-11320905 ( 22) CGGCTCGGCGACGCGCTCGGGC 1 chr15:72231139-72231639 ( 2) CCGCGCGTTCCGCCGCCGCCGC 1 chr19:14206655-14207155 ( 25) CGGCCCGGAGTCGCCGCCCGGG 1 chr17:30708649-30709149 ( 77) CGGCCCGGAGTCGCCGCCCGGG 1 chr14:104815810-10481631 ( 46) GGGCCGCGAGTGGCGCCGCTGC 1 chr9:11167-11667 ( 30) CGCCCCCTGCTGGCGCCGGGGC 1 chr17:7717099-7717599 ( 78) TGGCGCCGGGCGCCAGGCCGGC 1 chr5:139517842-139518342 ( 33) CGGCCCGGGGCCAAGGCCCGGC 1 chr11:120335932-12033643 ( 49) CCGCTCAGGGCCGCGCTCTCGC 1 chr3:12556777-12557277 ( 54) GTGCGCCGGCGTGCGCCGGCGT 1 chr19:37907145-37907645 ( 73) GCGCTGACCCTCGGGGTCCGGG 1 chr3:51538397-51538897 ( 65) GCGGTCGGGCGCGCGGGCCGGG 1 chr3:41199198-41199698 ( 16) GCGCGGAGCGTTCCGCCGCGCG 1 chr21:44939685-44940185 ( 62) CGGCGGCCGCGGGGCTCCCGGC 1 chr10:102918333-10291883 ( 68) CTGCAGGCGGCTGCGGGGCGGC 1 chr1:93078930-93079430 ( 64) GCGCTCGCCGCGCAGTCCCTGC 1 chr12:49060599-49061099 ( 79) TGCCGGCCCGGCGCGGTCGGGG 1 chr17:18087626-18088126 ( 2) CCGCCCGCTGGGCCGGCCAGGC 1 chr1:234478804-234479304 ( 46) GGCCCGGGGGTCCCGGCTCTGC 1 chr8:22109469-22109969 ( 47) GGGCGCGTTGCGCCGCCGGGGT 1 chr3:5121948-5122448 ( 44) GCGATGCCAGCGGCGGGCGGGC 1 chr17:59619589-59620089 ( 6) CTGCGCCCGCCGCGCGCGGCGC 1 chr1:1374993-1375493 ( 65) CAGCGCCCGCTGGCGTCCTCGC 1 chr19:58380532-58381032 ( 74) GTGCGCGGCGTCACGCCTCTGC 1 chr1:28552731-28553231 ( 32) CTCCCGAGCGCAGCGGCCCGGG 1 chr19:1652530-1653030 ( 74) CGCCTCCTCTGCGCGTCCCCGC 1 chr11:66421518-66422018 ( 46) GTGCTGACGGCTGCGCCGGCCG 1 chr1:244652996-244653496 ( 37) CCGCTCTCACCCCCGCGGGCGC 1 chr12:991165-991665 ( 60) TTGCTCACGGCCCGGGCTGGGC 1 chr13:113296837-11329733 ( 49) CCGCTGCGGGTCACGTGTCGGC 1 chr16:1971732-1972232 ( 74) GTGACGTCCCCGCCGGCGCCGC 1 chr12:12266856-12267356 ( 13) GCGCGCAGGGACACGGTCGCGG 1 chr12:123601833-12360233 ( 21) GGCCGGCCGCTGGAGCTGCGGG 1 chr20:1118283-1118783 ( 58) GCGCTCGCGTTGCCAACCCGGC 1 chr1:206612178-206612678 ( 71) CGGGCCCTTTTCGCGGCCGGGC 1 chr7:102572359-102572859 ( 47) TTGCGCGGGTTTGCCCCGCCGG 1 chr2:55419739-55420239 ( 4) GAGCGCGCTGCTCCCTCCGCGC 1 chr12:54379535-54380035 ( 44) CTCCGGCAGGTGGCGGGCGCGG 1 chr9:137422965-137423465 ( 54) GGGCGGGGCGAGGAAGCCGGGC 1 chr1:32817088-32817588 ( 8) TGGGTCACCGTCGCCGCCGCGT 1 chr6:143450490-143450990 ( 14) GCCCGCCGCGTTCCGCTGCCCG 1 chr12:124914596-12491509 ( 66) CCGCTGTCCTGAGCGTCCGGGC 1 chr1:212558822-212559322 ( 77) TGCCTCGGCCTCCCCGTGGCGC 1 chr19:35612522-35613022 ( 50) GGTGTCGCCGCCGCGGCGCTGT 1 chr19:44212433-44212933 ( 51) TCTCGGCCTCCGCCGCGGCCGC 1 chr16:30957663-30958163 ( 10) GGGCCGAGGGTAGCGGCTTCGC 1 chr15:101724085-10172458 ( 60) GCGGAGGCCGTGGCGTCGCGCC 1 chr15:65610861-65611361 ( 11) GTGGGGAGGCCGAGGGCCCGGG 1 chr3:193240663-193241163 ( 72) GCGCTGTGCTAGGCGCCGCGGT 1 chr17:75012376-75012876 ( 67) CGGCGGGCGCTTCCTCCCCGCG 1 chr5:112160534-112161034 ( 11) GGCCACACGGCGGCGTCTCGCC 1 chr19:1383567-1384067 ( 76) CCGAGCCGCTTTGGGCGGCGGC 1 chr9:132944411-132944911 ( 33) TGGCGGAGGCCGCCGTCGGCCT 1 chr12:103956936-10395743 ( 38) TCGCCGTCCGCTCCGTCCGCCC 1 chr16:181302-181802 ( 68) TCGCGCCGGGAGGGGGCGCTGT 1 chr19:38849521-38850021 ( 18) GCCACCGCCGCCGCCTCCGTGC 1 chr1:63523030-63523530 ( 23) TTCCGCCCGGCCGCGGTGGGCT 1 chr1:225474859-225475359 ( 50) GCGCGCCCCGTCCAACGCGGGT 1 chr12:122895959-12289645 ( 35) CGTCACGTCCGCCCGCCCGCGC 1 chr20:58650936-58651436 ( 9) GCTCGCAACGTTCCGGGCGCGG 1 chr1:155860284-155860784 ( 6) GGCCTCCTGGCAGCGCCGACGC 1 chrX:73944028-73944528 ( 36) GCCCGGCGCCCAGCCGTCGTGC 1 chr1:205122027-205122527 ( 40) CAGCGGCGTTGTCCGGGCGGGC 1 chr13:44917687-44918187 ( 47) CGGCCCGGGTTCGACTCCCGGT 1 chr8:19817099-19817599 ( 25) TGGCTCCTCGTTACCGCCCGGT 1 chr17:82494517-82495017 ( 46) CCCAGCACGCTTCCGCTGCGCC 1 chr8:33472977-33473477 ( 1) CGCCCCGAGCTCGCCCGCGCGG 1 chr5:177404072-177404572 ( 25) GGGGTCGGAGGCGCCGCCTGGG 1 chr13:52194209-52194709 ( 34) CCGCGCTCTCCTCCGTTTCCGG 1 chr4:4541822-4542322 ( 50) CTTCTCGCGTCGCCGTTGCCGG 1 chr22:20117220-20117720 ( 49) GCGGCGCGTTTCCCGCCGCTGG 1 chr10:93702412-93702912 ( 13) CGGCGCACTCGGGGGACGGTGC 1 chr19:36797459-36797959 ( 77) CACCGCACTCGTGGGCGCCCGC 1 chr16:2154973-2155473 ( 65) CGTCCGAACGCTGCAGGCCGGC 1 chr1:42335114-42335614 ( 15) GCGGTCACGGTCGCTTCGACGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGCKSVSSSYBSCGSCSSSGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47242 bayes= 9.97792 E= 4.2e-050 -1337 64 89 -90 -270 61 64 -46 -1337 -17 148 -190 -170 171 -143 -1337 -270 -43 95 20 -1337 127 61 -1337 -6 42 46 -170 -270 98 61 -170 -153 50 83 -125 -1337 53 106 -125 -238 68 -50 58 -238 71 38 -25 -190 46 120 -1337 -212 169 -105 -1337 -190 -84 161 -370 -370 42 92 -62 -1337 146 -66 -80 -1337 127 34 -190 -312 125 38 -270 -1337 61 103 -138 -1337 -129 182 -1337 -1337 138 -17 -112 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGCKSVSSSYBSCGSCSSSGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 106 E= 4.2e-050 0.000000 0.396226 0.471698 0.132075 0.037736 0.386792 0.396226 0.179245 0.000000 0.226415 0.707547 0.066038 0.075472 0.830189 0.094340 0.000000 0.037736 0.188679 0.490566 0.283019 0.000000 0.613208 0.386792 0.000000 0.235849 0.339623 0.349057 0.075472 0.037736 0.500000 0.386792 0.075472 0.084906 0.358491 0.452830 0.103774 0.000000 0.367925 0.528302 0.103774 0.047170 0.405660 0.179245 0.367925 0.047170 0.415094 0.330189 0.207547 0.066038 0.349057 0.584906 0.000000 0.056604 0.820755 0.122642 0.000000 0.066038 0.141509 0.773585 0.018868 0.018868 0.339623 0.481132 0.160377 0.000000 0.698113 0.160377 0.141509 0.000000 0.613208 0.320755 0.066038 0.028302 0.603774 0.330189 0.037736 0.000000 0.386792 0.518868 0.094340 0.000000 0.103774 0.896226 0.000000 0.000000 0.660377 0.226415 0.113208 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGCKSVSSSYBSCGSCSSSGC MEME-5 regular expression -------------------------------------------------------------------------------- [GC][GC][GC]C[GT][CG][GCA][CG][GC][GC][CT][CGT][GC]CG[GC]C[CG][CG][GC]G[CG] -------------------------------------------------------------------------------- Time 1803.80 secs. ******************************************************************************** ******************************************************************************** MOTIF TATTGAGTGCACTCAGACCCAGYGGATTAACA MEME-6 width = 32 sites = 8 llr = 297 E-value = 1.9e-040 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATTGAGTGCACTCAGACCCAGYGGATTAACA MEME-6 Description -------------------------------------------------------------------------------- Simplified A :9:::a::::9:::9:81::9::3:a::8a19 pos.-specific C :::::::::9:a:a:::9a9:15:::3:1:91 probability G ::::9:a:a:1::::a3:::19:8a::::::: matrix T a1aa1::a:1::a:1::::1::5:::8a1::: bits 2.0 * ** **** *** * * ** * * 1.8 * ** **** *** * * ** * * 1.6 * ** **** *** * * ** * * 1.4 **************** ***** ** * *** Relative 1.2 ********************** ***** *** Entropy 1.0 ******************************** (53.6 bits) 0.8 ******************************** 0.6 ******************************** 0.4 ******************************** 0.2 ******************************** 0.0 -------------------------------- Multilevel TATTGAGTGCACTCAGACCCAGCGGATTAACA consensus G TA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTGAGTGCACTCAGACCCAGYGGATTAACA MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------------- chr14:103204672-10320517 + 35 1.03e-19 atgagaattt tattgagtgcactcagacccagtggattaaca tccaaaaact chr1:151907366-151907866 - 5 4.15e-19 AGGAGAACTT TATTGAGTGCACTCAGACCCAGCGGACTAACA TCCA chr21:38223841-38224341 + 54 1.75e-18 aggaggattt tattgagtgcactcagacccggcggattaaca tccaaaggct chr4:25223706-25224206 + 32 6.12e-18 taggaggatt tattgagtgcactcagaaccagcagattaaca tccgaaaact chr22:19316669-19317169 - 11 4.23e-17 AGGGGGATGT TATTGAGTGCACTCTGGCCTAGTGGATTAACA TCCAAAGACC chr13:41148625-41149125 - 34 5.49e-17 AGGAGGATTT TTTTTAGTGCACTCAGACCCAGTGGATTTACA TCCAAAATTC chr21:38229222-38229722 + 34 9.58e-17 aggaggattt tattgagtgtgctcaggcccagcagattaaca accaaaggct chr19:16882061-16882561 - 44 4.54e-16 GGAGGATCTT TATTGAGTGCACTCAGACCCACTGGACTCAAC GTCTAAAAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTGAGTGCACTCAGACCCAGYGGATTAACA MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:103204672-10320517 1e-19 34_[+6]_34 chr1:151907366-151907866 4.2e-19 4_[-6]_64 chr21:38223841-38224341 1.8e-18 53_[+6]_15 chr4:25223706-25224206 6.1e-18 31_[+6]_37 chr22:19316669-19317169 4.2e-17 10_[-6]_58 chr13:41148625-41149125 5.5e-17 33_[-6]_35 chr21:38229222-38229722 9.6e-17 33_[+6]_35 chr19:16882061-16882561 4.5e-16 43_[-6]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTGAGTGCACTCAGACCCAGYGGATTAACA MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATTGAGTGCACTCAGACCCAGYGGATTAACA width=32 seqs=8 chr14:103204672-10320517 ( 35) TATTGAGTGCACTCAGACCCAGTGGATTAACA 1 chr1:151907366-151907866 ( 5) TATTGAGTGCACTCAGACCCAGCGGACTAACA 1 chr21:38223841-38224341 ( 54) TATTGAGTGCACTCAGACCCGGCGGATTAACA 1 chr4:25223706-25224206 ( 32) TATTGAGTGCACTCAGAACCAGCAGATTAACA 1 chr22:19316669-19317169 ( 11) TATTGAGTGCACTCTGGCCTAGTGGATTAACA 1 chr13:41148625-41149125 ( 34) TTTTTAGTGCACTCAGACCCAGTGGATTTACA 1 chr21:38229222-38229722 ( 34) TATTGAGTGTGCTCAGGCCCAGCAGATTAACA 1 chr19:16882061-16882561 ( 44) TATTGAGTGCACTCAGACCCACTGGACTCAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTGAGTGCACTCAGACCCAGYGGATTAACA MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 32 n= 41262 bayes= 11.484 E= 1.9e-040 -965 -965 -965 202 183 -965 -965 -97 -965 -965 -965 202 -965 -965 -965 202 -965 -965 178 -97 202 -965 -965 -965 -965 -965 198 -965 -965 -965 -965 202 -965 -965 198 -965 -965 178 -965 -97 183 -965 -102 -965 -965 198 -965 -965 -965 -965 -965 202 -965 198 -965 -965 183 -965 -965 -97 -965 -965 198 -965 161 -965 -2 -965 -97 178 -965 -965 -965 198 -965 -965 -965 178 -965 -97 183 -965 -102 -965 -965 -102 178 -965 -965 98 -965 102 2 -965 156 -965 -965 -965 198 -965 202 -965 -965 -965 -965 -2 -965 161 -965 -965 -965 202 161 -102 -965 -97 202 -965 -965 -965 -97 178 -965 -965 183 -102 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTGAGTGCACTCAGACCCAGYGGATTAACA MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 32 nsites= 8 E= 1.9e-040 0.000000 0.000000 0.000000 1.000000 0.875000 0.000000 0.000000 0.125000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.125000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.000000 0.125000 0.875000 0.000000 0.125000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.000000 0.000000 0.125000 0.000000 0.000000 1.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.125000 0.875000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.875000 0.000000 0.125000 0.875000 0.000000 0.125000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 0.500000 0.000000 0.500000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.750000 0.125000 0.000000 0.125000 1.000000 0.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTGAGTGCACTCAGACCCAGYGGATTAACA MEME-6 regular expression -------------------------------------------------------------------------------- TATTGAGTGCACTCAG[AG]CCCAG[CT][GA]GA[TC]TAACA -------------------------------------------------------------------------------- Time 2109.19 secs. ******************************************************************************** ******************************************************************************** MOTIF RRTGAYGTCAT MEME-7 width = 11 sites = 79 llr = 785 E-value = 8.4e-033 ******************************************************************************** -------------------------------------------------------------------------------- Motif RRTGAYGTCAT MEME-7 Description -------------------------------------------------------------------------------- Simplified A 35::a:::2a: pos.-specific C 1::::3:18:2 probability G 55:a:28:::1 matrix T 1:a::529::7 bits 2.0 * * * 1.8 *** * 1.6 *** * * 1.4 *** * * Relative 1.2 *** **** Entropy 1.0 *** **** (14.3 bits) 0.8 **** ***** 0.6 **** ***** 0.4 *********** 0.2 *********** 0.0 ----------- Multilevel GATGATGTCAT consensus AG CT sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRTGAYGTCAT MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------- chr17:78558305-78558805 - 30 4.61e-07 CACATGCAAT GATGATGTCAT CCACCCATGA chr8:144456559-144457059 - 53 4.61e-07 GTCATCCCCC GGTGATGTCAT CCCCCCATGT chr12:130764532-13076503 + 30 4.61e-07 TCACAGTGTT GATGATGTCAT GGTGCTGATG chr17:74513759-74514259 + 26 4.61e-07 TCATGTGATG GGTGATGTCAT GTGATGGGTG chr1:3992061-3992561 + 16 4.61e-07 GTCATGGAGA GGTGATGTCAT GGAGAGGTGA chr17:74514221-74514721 + 14 4.61e-07 tcatgtgatg ggtgatgtcat atcatgggtg chr12:56158076-56158576 + 34 9.37e-07 GTCCTCTGAG GGTGACGTCAT CGGGACGTAC chr1:1000646-1001146 + 70 9.37e-07 AGCCTGCTGG GATGACGTCAT GTGGCCCGTG chr7:158109493-158109993 - 19 9.37e-07 ATCACACAGG GGTGACGTCAT TCACTCACTG chr6:43809245-43809745 - 73 9.37e-07 TTGCCTGGTG GGTGACGTCAT CCAGATAAAC chr19:996319-996819 + 30 9.37e-07 TGGAAACAGT GGTGACGTCAT CGTTCAGACC chr19:2961969-2962469 - 31 9.37e-07 ATTTACATAA GATGACGTCAT ACATTTAAAG chr1:112404230-112404730 - 58 9.37e-07 AATGTAGGAT GATGACGTCAT TGATTCCACT chr8:22109469-22109969 + 26 9.37e-07 GAGCTCCGAC GGTGACGTCAT CTTTCCTGCA chr10:94673535-94674035 - 52 1.38e-06 CTTGGACTTG AGTGATGTCAT CTGAGGTGAT chr7:158097550-158098050 + 26 1.38e-06 AATGGTCTCT AATGATGTCAT AAGAAATAAT chr1:159916154-159916654 - 19 1.38e-06 AGTCAGGGAG AGTGATGTCAT TGCAGAGAAA chr5:116942563-116943063 - 15 1.86e-06 AAAAAGAGAT GATGAGGTCAT CCAGAGCATT chr1:42179984-42180484 + 53 2.32e-06 gcagtgcacc aatgacgtcat actgaatttt chr12:10613360-10613860 + 29 2.32e-06 GGCGCCTTGC AGTGACGTCAT CGCGCGGAAT chr15:72473495-72473995 + 67 2.32e-06 GCCTCTTTAA AATGACGTCAT TATAGGAGAC chr17:13420856-13421356 + 22 2.77e-06 tgagtcatta gatgatttcat cattgtgcaa chr6:52243251-52243751 + 33 2.77e-06 GTCAACACTG GGTGATTTCAT TTCTTCCATC chr10:93208985-93209485 - 24 3.71e-06 GATCATAAGC AGTGAGGTCAT AAACAGTGAG chr10:125973193-12597369 - 49 3.71e-06 AATTCTGGCT GGTGATGTCAC AATGACTCAC chr6:169396017-169396517 - 7 3.71e-06 TTGTCTGCAG AGTGAGGTCAT TTTCGG chr18:79719799-79720299 + 62 3.71e-06 GCGTCCTGGT GATGATGTCAC CTCCCATCGT chr18:79720305-79720805 + 10 3.71e-06 TGTCCTAGT GATGATGTCAC CACCCGTCAT chr7:157880896-157881396 + 85 3.71e-06 ATTACGGTAA AATGAGGTCAT GAGGG chr3:190183136-190183636 + 7 3.71e-06 GAAAAC AATGAGGTCAT GCAGAAGTAG chr21:46133875-46134375 - 81 3.71e-06 TGTGACTCC AGTGAGGTCAT CCTAGAGCAG chr5:138337263-138337763 + 41 4.60e-06 CTGAACCGCC TATGATGTCAT AATCACAATC chr2:46540597-46541097 - 69 5.06e-06 ATCATGCAGT GGTGACTTCAT TGGTGACAGT chr16:72127473-72127973 - 67 5.06e-06 AGGAATCAAT GATGACTTCAT GAAATTCACC chr5:139517842-139518342 + 21 5.06e-06 GCCTCCGGCC GGTGACTTCAT CCGGCCCGGG chr1:7537968-7538468 + 49 6.45e-06 aggctaccag catgatgtcat tgagtgcaaa chr3:5023262-5023762 + 59 6.45e-06 GTCACCTCAT GGTGACGTCAC CTGCCAAACC chr12:122895959-12289645 - 21 6.45e-06 CCCGCGCGGT GATGACGTCAC GACCCAGGGC chr2:240024606-240025106 - 27 1.11e-05 TGGGTGCTTG GGTGATGCCAT GTTGAGCAGA chr5:141658026-141658526 - 57 1.11e-05 CAAGGTCATC AGTGACTTCAT GTTACCAAAT chr7:152709601-152710101 - 25 1.20e-05 GTGACACTAG TATGAGGTCAT TTTAAACTAA chr17:77233791-77234291 + 23 1.41e-05 AGGTCAGCAA AATGAGTTCAT TCTGACAAAT chr1:175470934-175471434 - 53 1.41e-05 GAAGGACATA AATGAGTTCAT TACTCAGCCC chr6:83868559-83869059 - 88 1.41e-05 AT GATGATTTCAC TACTTAATGC chr8:48590095-48590595 + 70 1.55e-05 GGCATGTACC CATGAGGTCAT ATGGAGAATT chr5:74383092-74383592 + 88 1.73e-05 TGAGCTAGGA TGTGATTTCAT CA chr6:15735648-15736148 - 71 1.73e-05 CGTGGGAGGA AATGATGTCAG TGTGGTTTAT chr14_GL000225v1_random: + 35 1.87e-05 tgatcaccca ggtgatgtaac atttatctag chr5:158451484-158451984 - 74 1.87e-05 ACTGGTGTTG AGTGAGGTAAT GTCCCCAAAA chr6:75413372-75413872 - 33 1.87e-05 TGTTAGCTTT AGTGAGGTAAT TGGCAACCTA chr14_GL000225v1_random: + 40 1.87e-05 tgatcaccta ggtgatgtaac tcttgtctac chr6:124479894-124480394 + 72 1.87e-05 ATTGAGTTTA AGTGAGGTAAT AAAAttcttt chr15:67792443-67792943 + 19 2.04e-05 GTCATTCCAA GATTATGTCAT TGGATGTCAT chr20:62088387-62088887 - 38 2.04e-05 CTAGGACGGC TATGATGTCAC TTGGAGAAAG chr21:29217686-29218186 - 42 2.24e-05 GTGTCATCAA TATGATGTAAT TCCAGGAAAA chr6:149934170-149934670 - 36 2.54e-05 TCTCATCCGC CATGATGTCAC AAACTCACTG chr1_KI270709v1_random:7 + 3 3.00e-05 TC GATGATTCCAT CTGATTCCAT chr1:143264415-143264915 - 4 3.00e-05 TCCATTCGAT GATGATTCCAT TCG chr1:125181377-125181877 + 15 3.00e-05 GATTCTATGC GATGATTCCAT TCCATTCCAT chr10:11539268-11539768 + 30 3.00e-05 AAGGATATGA AGTGATGTAAC AATATTTAAA chr5:127206226-127206726 - 77 3.25e-05 TTCTCTTTAG AATGAGGTCAG TCTTATGAGC chr20:63339278-63339778 - 33 3.25e-05 TCTGTTTGGA TATGACGTAAT TCACTCGTCT chr1:204506872-204507372 - 89 3.79e-05 G GATGATGCAAT CACTCAAGGG chr8:23074548-23075048 - 48 3.79e-05 ATCCCCCACT GGTGATGCAAT AGGTAGGTGG chr6:49541075-49541575 + 12 3.79e-05 CTCAGTTACT GGTGATGCAAT TTCCTGTTTA chr3:9731358-9731858 + 10 4.16e-05 CCCGAGTAC GGTGACTTCAG TCTCCAGAAA chr13:112213450-11221395 - 54 4.16e-05 GCCCGGCAGG ACTGAGGTCAT TGTTGGCAGG chr17:60173324-60173824 + 10 4.66e-05 AGCCTAGTG TCTGATGTCAT CAGTCAGCAC chr8:27831648-27832148 - 6 5.06e-05 AGAGTTTAAC TGTGATTTCAC AGTTA chr1:212558822-212559322 + 65 5.06e-05 TTCCCCGAAG GGTGACGTAAG CGCGCCACGG chr10:22552771-22553271 - 57 5.06e-05 TTCCCTGTCA CATGAGGTAAT TCTGCTGGGG chr12:45415293-45415793 - 68 6.22e-05 AGCAATAAGC AGTGATGTCAA CTTCCCTATG chr6:4778026-4778526 - 73 6.22e-05 TGATGGAACT GATTATGTAAT CATACTCATA chr19:35612522-35613022 + 4 6.59e-05 GCC CGTGACGTCAG AGGCGGGCGC chr5:172771123-172771623 + 35 7.01e-05 AGCCAGAGGG GGAGACGTCAT CAGCCTCGGA chr7:116547327-116547827 + 65 7.01e-05 ACTTGCTAGA GATGAGCTCAT CCTTCTTGCT chr3:138833356-138833856 + 66 8.45e-05 ATTTAATTAT CATGACTTCAC CAGACAGTCA chr13:42762888-42763388 - 65 8.45e-05 ACCAAGACCA AGTTATGTCAC GCTTACCTCA chr1:181127007-181127507 + 43 9.22e-05 GGAAAGGGGA GCTGACGTCAG CAgagcacct -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRTGAYGTCAT MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:78558305-78558805 4.6e-07 29_[-7]_60 chr8:144456559-144457059 4.6e-07 52_[-7]_37 chr12:130764532-13076503 4.6e-07 29_[+7]_60 chr17:74513759-74514259 4.6e-07 25_[+7]_64 chr1:3992061-3992561 4.6e-07 15_[+7]_74 chr17:74514221-74514721 4.6e-07 13_[+7]_76 chr12:56158076-56158576 9.4e-07 33_[+7]_56 chr1:1000646-1001146 9.4e-07 69_[+7]_20 chr7:158109493-158109993 9.4e-07 18_[-7]_71 chr6:43809245-43809745 9.4e-07 72_[-7]_17 chr19:996319-996819 9.4e-07 29_[+7]_60 chr19:2961969-2962469 9.4e-07 30_[-7]_59 chr1:112404230-112404730 9.4e-07 57_[-7]_32 chr8:22109469-22109969 9.4e-07 25_[+7]_64 chr10:94673535-94674035 1.4e-06 51_[-7]_38 chr7:158097550-158098050 1.4e-06 25_[+7]_64 chr1:159916154-159916654 1.4e-06 18_[-7]_71 chr5:116942563-116943063 1.9e-06 14_[-7]_75 chr1:42179984-42180484 2.3e-06 52_[+7]_37 chr12:10613360-10613860 2.3e-06 28_[+7]_61 chr15:72473495-72473995 2.3e-06 66_[+7]_23 chr17:13420856-13421356 2.8e-06 21_[+7]_68 chr6:52243251-52243751 2.8e-06 32_[+7]_57 chr10:93208985-93209485 3.7e-06 23_[-7]_66 chr10:125973193-12597369 3.7e-06 48_[-7]_41 chr6:169396017-169396517 3.7e-06 6_[-7]_83 chr18:79719799-79720299 3.7e-06 61_[+7]_28 chr18:79720305-79720805 3.7e-06 9_[+7]_80 chr7:157880896-157881396 3.7e-06 84_[+7]_5 chr3:190183136-190183636 3.7e-06 6_[+7]_83 chr21:46133875-46134375 3.7e-06 80_[-7]_9 chr5:138337263-138337763 4.6e-06 40_[+7]_49 chr2:46540597-46541097 5.1e-06 68_[-7]_21 chr16:72127473-72127973 5.1e-06 66_[-7]_23 chr5:139517842-139518342 5.1e-06 20_[+7]_69 chr1:7537968-7538468 6.4e-06 48_[+7]_41 chr3:5023262-5023762 6.4e-06 58_[+7]_31 chr12:122895959-12289645 6.4e-06 20_[-7]_69 chr2:240024606-240025106 1.1e-05 26_[-7]_63 chr5:141658026-141658526 1.1e-05 56_[-7]_33 chr7:152709601-152710101 1.2e-05 24_[-7]_65 chr17:77233791-77234291 1.4e-05 22_[+7]_67 chr1:175470934-175471434 1.4e-05 52_[-7]_37 chr6:83868559-83869059 1.4e-05 87_[-7]_2 chr8:48590095-48590595 1.5e-05 69_[+7]_20 chr5:74383092-74383592 1.7e-05 87_[+7]_2 chr6:15735648-15736148 1.7e-05 70_[-7]_19 chr14_GL000225v1_random: 1.9e-05 34_[+7]_55 chr5:158451484-158451984 1.9e-05 73_[-7]_16 chr6:75413372-75413872 1.9e-05 32_[-7]_57 chr14_GL000225v1_random: 1.9e-05 39_[+7]_50 chr6:124479894-124480394 1.9e-05 71_[+7]_18 chr15:67792443-67792943 2e-05 18_[+7]_71 chr20:62088387-62088887 2e-05 37_[-7]_52 chr21:29217686-29218186 2.2e-05 41_[-7]_48 chr6:149934170-149934670 2.5e-05 35_[-7]_54 chr1_KI270709v1_random:7 3e-05 2_[+7]_87 chr1:143264415-143264915 3e-05 3_[-7]_86 chr1:125181377-125181877 3e-05 14_[+7]_75 chr10:11539268-11539768 3e-05 29_[+7]_60 chr5:127206226-127206726 3.3e-05 76_[-7]_13 chr20:63339278-63339778 3.3e-05 32_[-7]_57 chr1:204506872-204507372 3.8e-05 88_[-7]_1 chr8:23074548-23075048 3.8e-05 47_[-7]_42 chr6:49541075-49541575 3.8e-05 11_[+7]_78 chr3:9731358-9731858 4.2e-05 9_[+7]_80 chr13:112213450-11221395 4.2e-05 53_[-7]_36 chr17:60173324-60173824 4.7e-05 9_[+7]_80 chr8:27831648-27832148 5.1e-05 5_[-7]_84 chr1:212558822-212559322 5.1e-05 64_[+7]_25 chr10:22552771-22553271 5.1e-05 56_[-7]_33 chr12:45415293-45415793 6.2e-05 67_[-7]_22 chr6:4778026-4778526 6.2e-05 72_[-7]_17 chr19:35612522-35613022 6.6e-05 3_[+7]_86 chr5:172771123-172771623 7e-05 34_[+7]_55 chr7:116547327-116547827 7e-05 64_[+7]_25 chr3:138833356-138833856 8.4e-05 65_[+7]_24 chr13:42762888-42763388 8.4e-05 64_[-7]_25 chr1:181127007-181127507 9.2e-05 42_[+7]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRTGAYGTCAT MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RRTGAYGTCAT width=11 seqs=79 chr17:78558305-78558805 ( 30) GATGATGTCAT 1 chr8:144456559-144457059 ( 53) GGTGATGTCAT 1 chr12:130764532-13076503 ( 30) GATGATGTCAT 1 chr17:74513759-74514259 ( 26) GGTGATGTCAT 1 chr1:3992061-3992561 ( 16) GGTGATGTCAT 1 chr17:74514221-74514721 ( 14) GGTGATGTCAT 1 chr12:56158076-56158576 ( 34) GGTGACGTCAT 1 chr1:1000646-1001146 ( 70) GATGACGTCAT 1 chr7:158109493-158109993 ( 19) GGTGACGTCAT 1 chr6:43809245-43809745 ( 73) GGTGACGTCAT 1 chr19:996319-996819 ( 30) GGTGACGTCAT 1 chr19:2961969-2962469 ( 31) GATGACGTCAT 1 chr1:112404230-112404730 ( 58) GATGACGTCAT 1 chr8:22109469-22109969 ( 26) GGTGACGTCAT 1 chr10:94673535-94674035 ( 52) AGTGATGTCAT 1 chr7:158097550-158098050 ( 26) AATGATGTCAT 1 chr1:159916154-159916654 ( 19) AGTGATGTCAT 1 chr5:116942563-116943063 ( 15) GATGAGGTCAT 1 chr1:42179984-42180484 ( 53) AATGACGTCAT 1 chr12:10613360-10613860 ( 29) AGTGACGTCAT 1 chr15:72473495-72473995 ( 67) AATGACGTCAT 1 chr17:13420856-13421356 ( 22) GATGATTTCAT 1 chr6:52243251-52243751 ( 33) GGTGATTTCAT 1 chr10:93208985-93209485 ( 24) AGTGAGGTCAT 1 chr10:125973193-12597369 ( 49) GGTGATGTCAC 1 chr6:169396017-169396517 ( 7) AGTGAGGTCAT 1 chr18:79719799-79720299 ( 62) GATGATGTCAC 1 chr18:79720305-79720805 ( 10) GATGATGTCAC 1 chr7:157880896-157881396 ( 85) AATGAGGTCAT 1 chr3:190183136-190183636 ( 7) AATGAGGTCAT 1 chr21:46133875-46134375 ( 81) AGTGAGGTCAT 1 chr5:138337263-138337763 ( 41) TATGATGTCAT 1 chr2:46540597-46541097 ( 69) GGTGACTTCAT 1 chr16:72127473-72127973 ( 67) GATGACTTCAT 1 chr5:139517842-139518342 ( 21) GGTGACTTCAT 1 chr1:7537968-7538468 ( 49) CATGATGTCAT 1 chr3:5023262-5023762 ( 59) GGTGACGTCAC 1 chr12:122895959-12289645 ( 21) GATGACGTCAC 1 chr2:240024606-240025106 ( 27) GGTGATGCCAT 1 chr5:141658026-141658526 ( 57) AGTGACTTCAT 1 chr7:152709601-152710101 ( 25) TATGAGGTCAT 1 chr17:77233791-77234291 ( 23) AATGAGTTCAT 1 chr1:175470934-175471434 ( 53) AATGAGTTCAT 1 chr6:83868559-83869059 ( 88) GATGATTTCAC 1 chr8:48590095-48590595 ( 70) CATGAGGTCAT 1 chr5:74383092-74383592 ( 88) TGTGATTTCAT 1 chr6:15735648-15736148 ( 71) AATGATGTCAG 1 chr14_GL000225v1_random: ( 35) GGTGATGTAAC 1 chr5:158451484-158451984 ( 74) AGTGAGGTAAT 1 chr6:75413372-75413872 ( 33) AGTGAGGTAAT 1 chr14_GL000225v1_random: ( 40) GGTGATGTAAC 1 chr6:124479894-124480394 ( 72) AGTGAGGTAAT 1 chr15:67792443-67792943 ( 19) GATTATGTCAT 1 chr20:62088387-62088887 ( 38) TATGATGTCAC 1 chr21:29217686-29218186 ( 42) TATGATGTAAT 1 chr6:149934170-149934670 ( 36) CATGATGTCAC 1 chr1_KI270709v1_random:7 ( 3) GATGATTCCAT 1 chr1:143264415-143264915 ( 4) GATGATTCCAT 1 chr1:125181377-125181877 ( 15) GATGATTCCAT 1 chr10:11539268-11539768 ( 30) AGTGATGTAAC 1 chr5:127206226-127206726 ( 77) AATGAGGTCAG 1 chr20:63339278-63339778 ( 33) TATGACGTAAT 1 chr1:204506872-204507372 ( 89) GATGATGCAAT 1 chr8:23074548-23075048 ( 48) GGTGATGCAAT 1 chr6:49541075-49541575 ( 12) GGTGATGCAAT 1 chr3:9731358-9731858 ( 10) GGTGACTTCAG 1 chr13:112213450-11221395 ( 54) ACTGAGGTCAT 1 chr17:60173324-60173824 ( 10) TCTGATGTCAT 1 chr8:27831648-27832148 ( 6) TGTGATTTCAC 1 chr1:212558822-212559322 ( 65) GGTGACGTAAG 1 chr10:22552771-22553271 ( 57) CATGAGGTAAT 1 chr12:45415293-45415793 ( 68) AGTGATGTCAA 1 chr6:4778026-4778526 ( 73) GATTATGTAAT 1 chr19:35612522-35613022 ( 4) CGTGACGTCAG 1 chr5:172771123-172771623 ( 35) GGAGACGTCAT 1 chr7:116547327-116547827 ( 65) GATGAGCTCAT 1 chr3:138833356-138833856 ( 66) CATGACTTCAC 1 chr13:42762888-42763388 ( 65) AGTTATGTCAC 1 chr1:181127007-181127507 ( 43) GCTGACGTCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRTGAYGTCAT MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 53820 bayes= 10.8771 E= 8.4e-033 24 -174 107 -128 97 -274 92 -1295 -428 -1295 -1295 200 -1295 -1295 192 -269 202 -1295 -1295 -1295 -1295 26 -24 97 -1295 -432 163 -28 -1295 -152 -1295 189 -47 170 -1295 -1295 202 -1295 -1295 -1295 -428 -52 -174 158 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRTGAYGTCAT MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 79 E= 8.4e-033 0.291139 0.075949 0.531646 0.101266 0.481013 0.037975 0.481013 0.000000 0.012658 0.000000 0.000000 0.987342 0.000000 0.000000 0.962025 0.037975 1.000000 0.000000 0.000000 0.000000 0.000000 0.303797 0.215190 0.481013 0.000000 0.012658 0.784810 0.202532 0.000000 0.088608 0.000000 0.911392 0.177215 0.822785 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.012658 0.177215 0.075949 0.734177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRTGAYGTCAT MEME-7 regular expression -------------------------------------------------------------------------------- [GA][AG]TGA[TCG][GT]TCAT -------------------------------------------------------------------------------- Time 2418.48 secs. ******************************************************************************** ******************************************************************************** MOTIF AWTWYATCYYTTATSTWCAWYYAYATWWKAYRGACASTMYM MEME-8 width = 41 sites = 11 llr = 376 E-value = 3.4e-044 ******************************************************************************** -------------------------------------------------------------------------------- Motif AWTWYATCYYTTATSTWCAWYYAYATWWKAYRGACASTMYM MEME-8 Description -------------------------------------------------------------------------------- Simplified A 95:4:913::::71::5:66::7:9:6619:5:a:a::4:4 pos.-specific C ::::51:65611::51:92:65:5:1::::6:1:9:61665 probability G :::::::1:::1214::::::23:1:::5::57:::4:::: matrix T 15a65:9:54981819512443:5:944514:2:1::9:41 bits 2.0 * * * 1.8 * * * 1.6 * * ** * * * ** * *** * 1.4 * * ** * * * ** * *** * Relative 1.2 * * ** ** * * * * ** * *** * Entropy 1.0 ******* ****** *** ** ****** *** ******* (49.3 bits) 0.8 ************** *** ** ****** *********** 0.6 ***************************************** 0.4 ***************************************** 0.2 ***************************************** 0.0 ----------------------------------------- Multilevel ATTTCATCCCTTATCTACAACCATATAAGACAGACACTCCC consensus A AT ATT G T TTTGC TTT TG G ATA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTWYATCYYTTATSTWCAWYYAYATWWKAYRGACASTMYM MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------------------- chr17:80155464-80155964 - 15 6.15e-21 ACCAAGGTGT ATTTCATCCCTTATCTTCAACCACATAAAACAGACACTCCC AGAGTGGCCA chr1:85714472-85714972 + 38 1.81e-20 accagggcgt attttatcccttatcttcaactgcataagacggacactccc agagcagcca chr17:27695217-27695717 + 24 2.06e-19 actagggcat atttcatcccttatctacaactgcataagacagacactcct agagtggcca chr12:56653730-56654230 - 31 8.67e-19 ACCAGGGCTT ATTTCATCCCTTATCTATAACCATATAAGACACACACTCCC AGAGCGGCCA chr6:33101112-33101612 + 23 1.47e-18 accagggcat atttcatcccttatcttcaaccatgtaattcagacactccc agagtggcca chr5:134284380-134284880 + 53 2.08e-17 accagggcgt atttcatcccttatcttcaactgcacaagacagatactccc agagcag chrUn_KI270467v1:2615-31 + 10 1.59e-15 acaggatat aatatatatttgatgtaccttcatattttatggacagtata tagtatatat chrUn_KI270467v1:2001-25 + 45 2.57e-15 tacagaatat aatatatctttcatgtaccttcatattttatgtacagtata caatatatat chrUn_KI270467v1:3134-36 + 38 1.01e-14 tacagtttac aatatatattttgggtactttgatattttatggacagtata taatacacag chrUn_KI270466v1:195-695 + 32 2.46e-14 tacagtacat aatacatattttgtgtactttgatattttatgtacagcata taatatatat chr11:9451971-9452471 + 12 5.23e-13 gaccagggcg tatttcagtccttatctcaaccacataagacagacactccc aaagcgacct -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTWYATCYYTTATSTWCAWYYAYATWWKAYRGACASTMYM MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:80155464-80155964 6.1e-21 14_[-8]_45 chr1:85714472-85714972 1.8e-20 37_[+8]_22 chr17:27695217-27695717 2.1e-19 23_[+8]_36 chr12:56653730-56654230 8.7e-19 30_[-8]_29 chr6:33101112-33101612 1.5e-18 22_[+8]_37 chr5:134284380-134284880 2.1e-17 52_[+8]_7 chrUn_KI270467v1:2615-31 1.6e-15 9_[+8]_50 chrUn_KI270467v1:2001-25 2.6e-15 44_[+8]_15 chrUn_KI270467v1:3134-36 1e-14 37_[+8]_22 chrUn_KI270466v1:195-695 2.5e-14 31_[+8]_28 chr11:9451971-9452471 5.2e-13 11_[+8]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTWYATCYYTTATSTWCAWYYAYATWWKAYRGACASTMYM MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AWTWYATCYYTTATSTWCAWYYAYATWWKAYRGACASTMYM width=41 seqs=11 chr17:80155464-80155964 ( 15) ATTTCATCCCTTATCTTCAACCACATAAAACAGACACTCCC 1 chr1:85714472-85714972 ( 38) ATTTTATCCCTTATCTTCAACTGCATAAGACGGACACTCCC 1 chr17:27695217-27695717 ( 24) ATTTCATCCCTTATCTACAACTGCATAAGACAGACACTCCT 1 chr12:56653730-56654230 ( 31) ATTTCATCCCTTATCTATAACCATATAAGACACACACTCCC 1 chr6:33101112-33101612 ( 23) ATTTCATCCCTTATCTTCAACCATGTAATTCAGACACTCCC 1 chr5:134284380-134284880 ( 53) ATTTCATCCCTTATCTTCAACTGCACAAGACAGATACTCCC 1 chrUn_KI270467v1:2615-31 ( 10) AATATATATTTGATGTACCTTCATATTTTATGGACAGTATA 1 chrUn_KI270467v1:2001-25 ( 45) AATATATCTTTCATGTACCTTCATATTTTATGTACAGTATA 1 chrUn_KI270467v1:3134-36 ( 38) AATATATATTTTGGGTACTTTGATATTTTATGGACAGTATA 1 chrUn_KI270466v1:195-695 ( 32) AATACATATTTTGTGTACTTTGATATTTTATGTACAGCATA 1 chr11:9451971-9452471 ( 12) TATTTCAGTCCTTATCTCAACCACATAAGACAGACACTCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTWYATCYYTTATSTWCAWYYAYATWWKAYRGACASTMYM MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 41 n= 35880 bayes= 10.3328 E= 3.4e-044 188 -1010 -1010 -143 89 -1010 -1010 115 -1010 -1010 -1010 202 56 -1010 -1010 137 -1010 110 -1010 89 188 -148 -1010 -1010 -143 -1010 -1010 188 15 132 -148 -1010 -1010 110 -1010 89 -1010 132 -1010 56 -1010 -148 -1010 188 -1010 -148 -148 173 156 -1010 -48 -143 -143 -1010 -148 173 -1010 110 52 -143 -1010 -148 -1010 188 115 -1010 -1010 89 -1010 184 -1010 -143 137 -48 -1010 -44 137 -1010 -1010 56 -1010 132 -1010 56 -1010 110 -48 15 156 -1010 10 -1010 -1010 84 -1010 115 188 -1010 -148 -1010 -1010 -148 -1010 188 137 -1010 -1010 56 137 -1010 -1010 56 -143 -1010 84 89 188 -1010 -1010 -143 -1010 132 -1010 56 115 -1010 84 -1010 -1010 -148 152 -44 202 -1010 -1010 -1010 -1010 184 -1010 -143 202 -1010 -1010 -1010 -1010 132 52 -1010 -1010 -148 -1010 188 56 132 -1010 -1010 -1010 132 -1010 56 56 110 -1010 -143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTWYATCYYTTATSTWCAWYYAYATWWKAYRGACASTMYM MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 41 nsites= 11 E= 3.4e-044 0.909091 0.000000 0.000000 0.090909 0.454545 0.000000 0.000000 0.545455 0.000000 0.000000 0.000000 1.000000 0.363636 0.000000 0.000000 0.636364 0.000000 0.545455 0.000000 0.454545 0.909091 0.090909 0.000000 0.000000 0.090909 0.000000 0.000000 0.909091 0.272727 0.636364 0.090909 0.000000 0.000000 0.545455 0.000000 0.454545 0.000000 0.636364 0.000000 0.363636 0.000000 0.090909 0.000000 0.909091 0.000000 0.090909 0.090909 0.818182 0.727273 0.000000 0.181818 0.090909 0.090909 0.000000 0.090909 0.818182 0.000000 0.545455 0.363636 0.090909 0.000000 0.090909 0.000000 0.909091 0.545455 0.000000 0.000000 0.454545 0.000000 0.909091 0.000000 0.090909 0.636364 0.181818 0.000000 0.181818 0.636364 0.000000 0.000000 0.363636 0.000000 0.636364 0.000000 0.363636 0.000000 0.545455 0.181818 0.272727 0.727273 0.000000 0.272727 0.000000 0.000000 0.454545 0.000000 0.545455 0.909091 0.000000 0.090909 0.000000 0.000000 0.090909 0.000000 0.909091 0.636364 0.000000 0.000000 0.363636 0.636364 0.000000 0.000000 0.363636 0.090909 0.000000 0.454545 0.454545 0.909091 0.000000 0.000000 0.090909 0.000000 0.636364 0.000000 0.363636 0.545455 0.000000 0.454545 0.000000 0.000000 0.090909 0.727273 0.181818 1.000000 0.000000 0.000000 0.000000 0.000000 0.909091 0.000000 0.090909 1.000000 0.000000 0.000000 0.000000 0.000000 0.636364 0.363636 0.000000 0.000000 0.090909 0.000000 0.909091 0.363636 0.636364 0.000000 0.000000 0.000000 0.636364 0.000000 0.363636 0.363636 0.545455 0.000000 0.090909 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTWYATCYYTTATSTWCAWYYAYATWWKAYRGACASTMYM MEME-8 regular expression -------------------------------------------------------------------------------- A[TA]T[TA][CT]AT[CA][CT][CT]TTAT[CG]T[AT]CA[AT][CT][CT][AG][TC]AT[AT][AT][GT]A[CT][AG]GACA[CG]T[CA][CT][CA] -------------------------------------------------------------------------------- Time 2715.50 secs. ******************************************************************************** ******************************************************************************** MOTIF GTYYGNCTHMBAABCRRAAGGTYSYGGGTTCGADHCC MEME-9 width = 37 sites = 10 llr = 299 E-value = 3.4e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTYYGNCTHMBAABCRRAAGGTYSYGGGTTCGADHCC MEME-9 Description -------------------------------------------------------------------------------- Simplified A :::1:3::451771:539a:3::::21::::1a32:1 pos.-specific C :163:39:333:32911:::::6662::::a::14a8 probability G a:1192::1123:31361:a7::4158a:::9:4::: matrix T :935121a214::4:1:::::a4:311:aa:::24:1 bits 2.0 * * ** * **** * * 1.8 * * ** * **** * * 1.6 ** * *** * **** * * 1.4 ** * ** * *** * ****** * Relative 1.2 ** * ** ** * *** * ****** * Entropy 1.0 ** * ** ** * ******* ******* ** (43.1 bits) 0.8 ** * ** ** * ******* ******* ** 0.6 *** * ** ** * ********* ******* ** 0.4 ***** ** * ** *********** ******* *** 0.2 ***** ******************************* 0.0 ------------------------------------- Multilevel GTCTGACTAATAATCAGAAGGTCCCGGGTTCGAGCCC consensus TC C CCCGCG GA A TGTA AT sequence G T G C C TA T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTYYGNCTHMBAABCRRAAGGTYSYGGGTTCGADHCC MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------- chr11:59550765-59551265 - 33 3.31e-16 CGGTTATCAC GTCTGCTTTACACGCAGAAGGTCCTGGGTTCGAGCCC CAGTGGAACC chr15:89334836-89335336 + 62 3.76e-16 tggataaggc gtctgacttcggatcagaagattgcaggttcgagtcc tg chr6:26537313-26537813 + 10 6.90e-16 ggataacgc gtctgactacggatcagaagattccaggttcgactcc tggctggctc chr5:181169387-181169887 + 48 9.78e-16 tggttatcac gttcgcctaacacgcgaaaggtccccggttcgaaacc gggcggaaac chr6:27280054-27280554 - 27 1.53e-15 TGGTTATCAC GTTCGCCTCACACGCGAAAGGTCCCCGGTTCGAAACC GGGCAGAAGC chr16:71426296-71426796 + 22 3.04e-14 tgggcagcgc gtcagtctcataatctgaaggtcctgagttcgagcct cagagagggc chr19:33176877-33177377 + 6 6.05e-14 aaagc gcctgtctagtaaacaggagatcctgggttcgaatcc cagcggtgcc chr17:19507961-19508461 + 44 1.06e-13 atggtagcgc gtctgactccagatcagaaggttgcgtgttcaagtca cgtcggggtc chr1:161540032-161540532 + 35 2.45e-13 cggttagcgc gttcggctgttaaccgaaaggttggtggttcgatccc acccagggac chr6:27687993-27688493 + 21 9.53e-13 tggttagagc gtggtgctaataacgccaaggtcgcgggttcgatccc cgtactggcc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTYYGNCTHMBAABCRRAAGGTYSYGGGTTCGADHCC MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:59550765-59551265 3.3e-16 32_[-9]_31 chr15:89334836-89335336 3.8e-16 61_[+9]_2 chr6:26537313-26537813 6.9e-16 9_[+9]_54 chr5:181169387-181169887 9.8e-16 47_[+9]_16 chr6:27280054-27280554 1.5e-15 26_[-9]_37 chr16:71426296-71426796 3e-14 21_[+9]_42 chr19:33176877-33177377 6e-14 5_[+9]_58 chr17:19507961-19508461 1.1e-13 43_[+9]_20 chr1:161540032-161540532 2.4e-13 34_[+9]_29 chr6:27687993-27688493 9.5e-13 20_[+9]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTYYGNCTHMBAABCRRAAGGTYSYGGGTTCGADHCC MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTYYGNCTHMBAABCRRAAGGTYSYGGGTTCGADHCC width=37 seqs=10 chr11:59550765-59551265 ( 33) GTCTGCTTTACACGCAGAAGGTCCTGGGTTCGAGCCC 1 chr15:89334836-89335336 ( 62) GTCTGACTTCGGATCAGAAGATTGCAGGTTCGAGTCC 1 chr6:26537313-26537813 ( 10) GTCTGACTACGGATCAGAAGATTCCAGGTTCGACTCC 1 chr5:181169387-181169887 ( 48) GTTCGCCTAACACGCGAAAGGTCCCCGGTTCGAAACC 1 chr6:27280054-27280554 ( 27) GTTCGCCTCACACGCGAAAGGTCCCCGGTTCGAAACC 1 chr16:71426296-71426796 ( 22) GTCAGTCTCATAATCTGAAGGTCCTGAGTTCGAGCCT 1 chr19:33176877-33177377 ( 6) GCCTGTCTAGTAAACAGGAGATCCTGGGTTCGAATCC 1 chr17:19507961-19508461 ( 44) GTCTGACTCCAGATCAGAAGGTTGCGTGTTCAAGTCA 1 chr1:161540032-161540532 ( 35) GTTCGGCTGTTAACCGAAAGGTTGGTGGTTCGATCCC 1 chr6:27687993-27688493 ( 21) GTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTYYGNCTHMBAABCRRAAGGTYSYGGGTTCGADHCC MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 37 n= 38272 bayes= 11.3359 E= 3.4e-025 -997 -997 198 -997 -997 -134 -997 187 -997 124 -134 29 -130 24 -134 102 -997 -997 182 -130 29 24 -34 -30 -997 182 -997 -130 -997 -997 -997 202 70 24 -134 -30 102 24 -134 -130 -130 24 -34 70 151 -997 24 -997 151 24 -997 -997 -130 -34 24 70 -997 182 -134 -997 102 -134 24 -130 29 -134 124 -997 187 -997 -134 -997 202 -997 -997 -997 -997 -997 198 -997 29 -997 146 -997 -997 -997 -997 202 -997 124 -997 70 -997 124 65 -997 -997 124 -134 29 -30 -34 98 -130 -130 -997 165 -130 -997 -997 198 -997 -997 -997 -997 202 -997 -997 -997 202 -997 198 -997 -997 -130 -997 182 -997 202 -997 -997 -997 29 -134 65 -30 -30 65 -997 70 -997 198 -997 -997 -130 165 -997 -130 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTYYGNCTHMBAABCRRAAGGTYSYGGGTTCGADHCC MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 37 nsites= 10 E= 3.4e-025 0.000000 0.000000 1.000000 0.000000 0.000000 0.100000 0.000000 0.900000 0.000000 0.600000 0.100000 0.300000 0.100000 0.300000 0.100000 0.500000 0.000000 0.000000 0.900000 0.100000 0.300000 0.300000 0.200000 0.200000 0.000000 0.900000 0.000000 0.100000 0.000000 0.000000 0.000000 1.000000 0.400000 0.300000 0.100000 0.200000 0.500000 0.300000 0.100000 0.100000 0.100000 0.300000 0.200000 0.400000 0.700000 0.000000 0.300000 0.000000 0.700000 0.300000 0.000000 0.000000 0.100000 0.200000 0.300000 0.400000 0.000000 0.900000 0.100000 0.000000 0.500000 0.100000 0.300000 0.100000 0.300000 0.100000 0.600000 0.000000 0.900000 0.000000 0.100000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.300000 0.000000 0.700000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.600000 0.400000 0.000000 0.000000 0.600000 0.100000 0.300000 0.200000 0.200000 0.500000 0.100000 0.100000 0.000000 0.800000 0.100000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.100000 0.000000 0.900000 0.000000 1.000000 0.000000 0.000000 0.000000 0.300000 0.100000 0.400000 0.200000 0.200000 0.400000 0.000000 0.400000 0.000000 1.000000 0.000000 0.000000 0.100000 0.800000 0.000000 0.100000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTYYGNCTHMBAABCRRAAGGTYSYGGGTTCGADHCC MEME-9 regular expression -------------------------------------------------------------------------------- GT[CT][TC]G[ACGT]CT[ACT][AC][TCG][AG][AC][TGC]C[AG][GA]AAG[GA]T[CT][CG][CT][GAC]GGTTCGA[GAT][CTA]CC -------------------------------------------------------------------------------- Time 3013.46 secs. ******************************************************************************** ******************************************************************************** MOTIF CYTGGCASHRTGCCAG MEME-10 width = 16 sites = 29 llr = 384 E-value = 1.7e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYTGGCASHRTGCCAG MEME-10 Description -------------------------------------------------------------------------------- Simplified A :1::::81331:1191 pos.-specific C 63:::a14521:99:: probability G 2:1aa::4:41a1::9 matrix T 268:::1:217:::1: bits 2.0 ** * 1.8 *** * 1.6 *** * * 1.4 *** * *** Relative 1.2 ***** ***** Entropy 1.0 ***** ***** (19.1 bits) 0.8 ****** ****** 0.6 ******** ****** 0.4 ********* ****** 0.2 **************** 0.0 ---------------- Multilevel CTTGGCACCGTGCCAG consensus C GAA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTGGCASHRTGCCAG MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr1:181127007-181127507 - 73 1.50e-09 GTCTAGGCTG CTTGGCACAGTGCCAG GTGCTCCATA chr14:95291778-95292278 - 21 1.50e-09 CACGTCAACC CTTGGCACAGTGCCAG GAACACAGTC chr22:29821323-29821823 + 48 2.51e-09 atgtggagtg cttggcagaatgccag gtccccggaa chrX:13647569-13648069 + 21 3.52e-09 AATAGGCCCT CCTGGCAGCATGCCAG GTCATATCAT chr6:31777143-31777643 + 28 5.02e-09 GTGACTCAGG CCTGGCACAGTGCCAG GGACAGACCC chr5:177404072-177404572 - 54 5.02e-09 AGTACTGCGA CCTGGCACAGTGCCAG ACCCCAACCC chr17:40314516-40315016 - 36 1.85e-08 AAGAGCTGAG CCTGGCACCTTGCCAG CCCCAGGACA chr17:21040166-21040666 - 59 2.05e-08 TGCAGTGCCA GTTGGCAGTGTGCCAG CAAGGAGCCC chr16:1271736-1272236 + 34 2.50e-08 CGTCTGCATG GTTGGCACCCTGCCAG CTGGTCTCTG chr15:74546147-74546647 + 23 7.71e-08 CTGCCCCCGC CTTGGCAGCTGGCCAG CGTCTGCGTG chr17:1080693-1081193 + 81 1.31e-07 TGAGAAGCCA CCTGGCAGAAAGCCAG GGGC chr8:17495772-17496272 - 70 1.31e-07 TAGTAATAAC TTTGGCAAAGTGCCAG ATTTGTATTG chr13:112849472-11284997 + 36 2.25e-07 gttgttgagt tttggctgtgtgccag ggattcagtg chr1:153880941-153881441 - 47 2.25e-07 CTGACTGAGT GTTGGCATCATGCCAG GGGCTGCAAA chr10:87586167-87586667 + 48 2.84e-07 ccctaggtaa tttggcagcctgccaa atCCTACTTA chr2:178484595-178485095 - 58 3.22e-07 CTATCACAGA CTTGGCTCCATGCCAA AGCTGACGAC chr5:10601235-10601735 - 21 3.89e-07 GCTGGGAGGA GTTGGCACCCAGCCAG GTTGAGCCTC chr10:12720344-12720844 - 80 4.19e-07 ACATT CAGGGCACTGTGCCAG CCACTGGCTT chr19:13846947-13847447 + 20 5.43e-07 GCCACCCTGA CCTGGCCCCAGGCCAG AACTGGGGGG chr9:136109548-136110048 - 85 6.50e-07 . CTGGGCAGCGTGCCCG GGCATGCCGG chr1:232620487-232620987 - 24 8.84e-07 TTTGTTTAAA ACTGGCAGTTTGCCAG TCAGAATAGC chr6:43229183-43229683 + 51 1.96e-06 CTCGCTGCGC CCCGGCACCATGGCAG CAGCCATTCC chr9:18976708-18977208 + 36 2.10e-06 atgtgaagca cttagcacaatgcctg gctcacggCT chr5:115545009-115545509 + 63 2.10e-06 gcacgtctta catggcagcaggcaag agaggaaaat chr4:105708481-105708981 + 76 2.56e-06 GGGGGAAACG TTTGGCAGTGCGACAG TAGGAAGTG chr1:229221452-229221952 + 45 4.65e-06 GCACATTTTC TTTGGCAATAGGCCAA CTATTTGTTC chr16:4944746-4945246 + 83 7.12e-06 CCCTACCCGC CCGGGCCCCCTGGCAG AA chr19:55216325-55216825 - 84 7.97e-06 T CCTGGCTGCCCGCAAG GCCAGGAAGA chr3:138833356-138833856 - 81 9.45e-06 CATT GTGGGCAGTGTGACTG TCTGGTGAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTGGCASHRTGCCAG MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:181127007-181127507 1.5e-09 72_[-10]_12 chr14:95291778-95292278 1.5e-09 20_[-10]_64 chr22:29821323-29821823 2.5e-09 47_[+10]_37 chrX:13647569-13648069 3.5e-09 20_[+10]_64 chr6:31777143-31777643 5e-09 27_[+10]_57 chr5:177404072-177404572 5e-09 53_[-10]_31 chr17:40314516-40315016 1.9e-08 35_[-10]_49 chr17:21040166-21040666 2e-08 58_[-10]_26 chr16:1271736-1272236 2.5e-08 33_[+10]_51 chr15:74546147-74546647 7.7e-08 22_[+10]_62 chr17:1080693-1081193 1.3e-07 80_[+10]_4 chr8:17495772-17496272 1.3e-07 69_[-10]_15 chr13:112849472-11284997 2.2e-07 35_[+10]_49 chr1:153880941-153881441 2.2e-07 46_[-10]_38 chr10:87586167-87586667 2.8e-07 47_[+10]_37 chr2:178484595-178485095 3.2e-07 57_[-10]_27 chr5:10601235-10601735 3.9e-07 20_[-10]_64 chr10:12720344-12720844 4.2e-07 79_[-10]_5 chr19:13846947-13847447 5.4e-07 19_[+10]_65 chr9:136109548-136110048 6.5e-07 84_[-10] chr1:232620487-232620987 8.8e-07 23_[-10]_61 chr6:43229183-43229683 2e-06 50_[+10]_34 chr9:18976708-18977208 2.1e-06 35_[+10]_49 chr5:115545009-115545509 2.1e-06 62_[+10]_22 chr4:105708481-105708981 2.6e-06 75_[+10]_9 chr1:229221452-229221952 4.7e-06 44_[+10]_40 chr16:4944746-4945246 7.1e-06 82_[+10]_2 chr19:55216325-55216825 8e-06 83_[-10]_1 chr3:138833356-138833856 9.5e-06 80_[-10]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTGGCASHRTGCCAG MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYTGGCASHRTGCCAG width=16 seqs=29 chr1:181127007-181127507 ( 73) CTTGGCACAGTGCCAG 1 chr14:95291778-95292278 ( 21) CTTGGCACAGTGCCAG 1 chr22:29821323-29821823 ( 48) CTTGGCAGAATGCCAG 1 chrX:13647569-13648069 ( 21) CCTGGCAGCATGCCAG 1 chr6:31777143-31777643 ( 28) CCTGGCACAGTGCCAG 1 chr5:177404072-177404572 ( 54) CCTGGCACAGTGCCAG 1 chr17:40314516-40315016 ( 36) CCTGGCACCTTGCCAG 1 chr17:21040166-21040666 ( 59) GTTGGCAGTGTGCCAG 1 chr16:1271736-1272236 ( 34) GTTGGCACCCTGCCAG 1 chr15:74546147-74546647 ( 23) CTTGGCAGCTGGCCAG 1 chr17:1080693-1081193 ( 81) CCTGGCAGAAAGCCAG 1 chr8:17495772-17496272 ( 70) TTTGGCAAAGTGCCAG 1 chr13:112849472-11284997 ( 36) TTTGGCTGTGTGCCAG 1 chr1:153880941-153881441 ( 47) GTTGGCATCATGCCAG 1 chr10:87586167-87586667 ( 48) TTTGGCAGCCTGCCAA 1 chr2:178484595-178485095 ( 58) CTTGGCTCCATGCCAA 1 chr5:10601235-10601735 ( 21) GTTGGCACCCAGCCAG 1 chr10:12720344-12720844 ( 80) CAGGGCACTGTGCCAG 1 chr19:13846947-13847447 ( 20) CCTGGCCCCAGGCCAG 1 chr9:136109548-136110048 ( 85) CTGGGCAGCGTGCCCG 1 chr1:232620487-232620987 ( 24) ACTGGCAGTTTGCCAG 1 chr6:43229183-43229683 ( 51) CCCGGCACCATGGCAG 1 chr9:18976708-18977208 ( 36) CTTAGCACAATGCCTG 1 chr5:115545009-115545509 ( 63) CATGGCAGCAGGCAAG 1 chr4:105708481-105708981 ( 76) TTTGGCAGTGCGACAG 1 chr1:229221452-229221952 ( 45) TTTGGCAATAGGCCAA 1 chr16:4944746-4945246 ( 83) CCGGGCCCCCTGGCAG 1 chr19:55216325-55216825 ( 84) CCTGGCTGCCCGCAAG 1 chr3:138833356-138833856 ( 81) GTGGGCAGTGTGACTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTGGCASHRTGCCAG MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 50830 bayes= 10.6598 E= 1.7e-018 -283 129 -56 -51 -183 44 -1150 125 -1150 -288 -88 175 -283 -1150 193 -1150 -1150 -1150 198 -1150 -1150 198 -1150 -1150 175 -188 -1150 -125 -183 82 82 -283 17 93 -1150 -3 49 -56 58 -125 -183 -188 -88 156 -1150 -1150 198 -1150 -183 176 -188 -1150 -183 187 -1150 -1150 187 -288 -1150 -183 -125 -1150 182 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTGGCASHRTGCCAG MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 29 E= 1.7e-018 0.034483 0.620690 0.172414 0.172414 0.068966 0.344828 0.000000 0.586207 0.000000 0.034483 0.137931 0.827586 0.034483 0.000000 0.965517 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.827586 0.068966 0.000000 0.103448 0.068966 0.448276 0.448276 0.034483 0.275862 0.482759 0.000000 0.241379 0.344828 0.172414 0.379310 0.103448 0.068966 0.068966 0.137931 0.724138 0.000000 0.000000 1.000000 0.000000 0.068966 0.862069 0.068966 0.000000 0.068966 0.931034 0.000000 0.000000 0.896552 0.034483 0.000000 0.068966 0.103448 0.000000 0.896552 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYTGGCASHRTGCCAG MEME-10 regular expression -------------------------------------------------------------------------------- C[TC]TGGCA[CG][CAT][GA]TGCCAG -------------------------------------------------------------------------------- Time 3309.73 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:101724085-10172458 1.26e-01 68_[-5(1.47e-05)]_10 chr19:44255962-44256462 4.84e-02 14_[-3(2.62e-05)]_64 chr17:30708649-30709149 2.23e-01 76_[-5(1.14e-06)]_2 chr3:12556777-12557277 3.49e-01 53_[+5(1.87e-06)]_25 chr16:30957663-30958163 1.98e-01 9_[-5(3.68e-05)]_69 chr1:27341720-27342220 1.21e-02 14_[-5(2.97e-08)]_64 chr5:115545009-115545509 1.18e-04 62_[+10(2.10e-06)]_22 chr11:120335932-12033643 1.99e-01 48_[-5(1.87e-06)]_30 chr21:46133875-46134375 3.13e-03 33_[-7(7.01e-05)]_36_[-7(3.71e-06)]_\ 9 chr6:82144164-82144664 1.40e-01 7_[-4(1.50e-05)]_84 chr5:37668474-37668974 5.23e-01 100 chrUn_KI270465v1:771-127 3.65e-01 100 chr5:116942563-116943063 3.87e-02 14_[-7(1.86e-06)]_75 chr6:83868559-83869059 1.57e-02 87_[-7(1.41e-05)]_2 chr18:50629062-50629562 2.57e-01 100 chr1:2646785-2647285 1.83e-01 100 chr1:224330054-224330554 6.86e-01 100 chr10:90136655-90137155 6.92e-01 100 chr2:3574917-3575417 9.62e-01 100 chr19:36797459-36797959 7.04e-01 100 chr15:72231139-72231639 2.95e-03 1_[-5(1.00e-06)]_77 chr20:50929288-50929788 6.12e-01 100 chr15:89334836-89335336 1.50e-08 61_[+9(3.76e-16)]_2 chr9:130789702-130790202 6.86e-01 100 chr10:63465811-63466311 8.68e-02 15_[-5(7.70e-07)]_41_[-5(6.61e-05)] chr10:126481192-12648169 4.64e-02 18_[+4(9.32e-05)]_29_[+4(1.50e-05)]_\ 35 chr13:39148423-39148923 1.01e-01 16_[-4(1.50e-05)]_75 chr11:9759596-9760096 4.07e-01 75_[-4(2.26e-05)]_16 chr3:100002804-100003304 5.02e-02 6_[-2(2.43e-05)]_36_[+4(1.50e-05)]_\ 27 chr1:143184461-143184961 2.23e-01 36_[-3(6.40e-05)]_42 chr1:228198917-228199417 4.59e-01 100 chr3:190183136-190183636 2.12e-02 6_[+7(3.71e-06)]_83 chr7:128899402-128899902 2.32e-01 59_[+8(9.00e-05)] chr17:7484184-7484684 8.95e-01 100 chr12:56630130-56630630 4.91e-01 100 chr15:72473495-72473995 1.03e-01 66_[+7(2.32e-06)]_23 chr13:49877583-49878083 3.62e-01 23_[-4(9.32e-05)]_68 chr13:48330458-48330958 1.32e-13 5_[-3(6.82e-09)]_1_[-1(4.44e-08)]_\ [+2(7.15e-13)]_30 chr17:82340832-82341332 6.01e-01 100 chr5:181169387-181169887 9.70e-09 47_[+9(9.78e-16)]_16 chr14:22536840-22537340 9.71e-02 31_[-4(3.02e-05)]_2_[-4(1.50e-05)]_\ 38_[-4(2.26e-05)]_2 chr15:75368422-75368922 5.03e-01 100 chr1:16122855-16123355 6.58e-01 100 chr11:59550765-59551265 2.12e-10 32_[-9(3.31e-16)]_31 chr7:139004299-139004799 1.23e-01 59_[+8(2.55e-05)] chr10:17201452-17201952 2.53e-01 1_[-10(6.52e-05)]_83 chr12:103956936-10395743 3.60e-01 37_[-5(4.76e-05)]_41 chr21:38223841-38224341 4.27e-11 53_[+6(1.75e-18)]_15 chr7:116547327-116547827 1.07e-01 64_[+7(7.01e-05)]_25 chr1:154295582-154296082 5.26e-01 100 chr1:155860284-155860784 4.85e-02 2_[+10(2.15e-05)]_82 chr1:243850761-243851261 1.22e-01 6_[+5(8.79e-07)]_72 chr1:32817088-32817588 6.29e-02 7_[+5(2.36e-05)]_71 chr19:43950732-43951232 2.53e-01 100 chr17:79839707-79840207 2.97e-01 9_[-5(8.79e-07)]_35_[+5(8.04e-06)]_\ 12 chr19:35545449-35545949 9.73e-03 17_[-5(9.88e-06)]_23_[-5(1.39e-08)]_\ 16 chr7:101138383-101138883 2.38e-02 48_[+4(1.50e-05)]_10_[+4(1.50e-05)]_\ 4_[-4(7.10e-05)]_11 chr10:42782518-42783018 7.71e-01 100 chr20:24773601-24774101 3.57e-03 19_[-4(1.50e-05)]_19_[+4(1.50e-05)]_\ 44 chr15:95246924-95247424 1.07e-01 55_[-4(3.02e-05)]_36 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chr17:18625549-18626049 9.77e-01 100 chr6:157323311-157323811 8.21e-01 100 chr13:42720362-42720862 3.31e-01 29_[-4(1.50e-05)]_62 chr11:36149644-36150144 3.71e-01 27_[+4(1.50e-05)]_7_[+4(1.50e-05)]_\ 48 chr3:51538397-51538897 2.06e-01 64_[+5(2.38e-06)]_14 chr1:90055231-90055731 1.88e-04 41_[-1(1.88e-08)]_39 chr1_KI270709v1_random:7 1.62e-01 2_[+7(3.00e-05)]_38_[+7(3.00e-05)]_\ 15_[+7(3.00e-05)]_12 chr6:28643344-28643844 2.66e-01 100 chr16:88496764-88497264 4.81e-03 77_[+1(1.26e-06)]_3 chr1:44213178-44213678 9.73e-01 100 chr2:172253133-172253633 1.86e-01 4_[+4(1.50e-05)]_63_[-4(1.50e-05)]_\ 15 chr11:75710193-75710693 3.71e-10 13_[-2(5.64e-08)]_[+1(2.91e-08)]_\ [+3(2.24e-08)]_23 chr3:25582174-25582674 2.55e-03 12_[-4(9.32e-05)]_22_[+1(6.59e-07)]_\ 37 chr11:1418126-1418626 6.84e-01 100 chr9:11167-11667 1.12e-01 29_[+5(1.66e-06)]_49 chr17:51153279-51153779 2.41e-01 54_[+10(7.79e-05)]_30 chr1:25998118-25998618 6.26e-01 100 chr21:29217686-29218186 8.63e-04 17_[-2(2.13e-05)]_2_[-7(2.24e-05)]_\ 3_[+4(7.10e-05)]_36 chr1:37989791-37990291 7.66e-01 100 chr5:175378418-175378918 2.14e-02 57_[-4(4.86e-05)]_34 chr19:39411886-39412386 2.34e-01 100 chr10:86759526-86760026 1.30e-04 33_[-2(2.05e-07)]_[+1(3.40e-06)]_25 chr1:228165577-228166077 5.54e-02 70_[+5(3.37e-07)]_8 chr17:7836699-7837199 9.52e-01 100 chr17:64325603-64326103 2.73e-02 48_[+1(3.31e-07)]_32 chr7:135871663-135872163 2.17e-06 50_[+1(8.04e-10)]_5_[+3(5.24e-06)]_\ 3 chr17:42388567-42389067 1.96e-01 100 chr1:42602446-42602946 2.21e-19 3_[-3(4.85e-11)]_[-1(6.44e-12)]_\ [+2(2.85e-12)]_33 chr1:163321567-163322067 7.37e-01 100 chr19:1383567-1384067 2.61e-01 36_[+1(3.57e-05)]_19_[+5(4.76e-05)]_\ 3 chr21:43309827-43310327 3.12e-04 49_[-1(4.59e-09)]_31 chr1:205122027-205122527 1.61e-01 39_[+5(7.16e-05)]_39 chr4:72112458-72112958 8.62e-02 25_[-4(1.50e-05)]_19_[-4(1.50e-05)]_\ 3_[-4(1.50e-05)]_12_[-4(1.50e-05)]_5 chr10:93702412-93702912 6.98e-01 100 chr20:53611435-53611935 5.84e-02 79_[+4(3.41e-05)]_12 chr4:184011189-184011689 7.43e-02 63_[+1(1.60e-06)]_17 chr22:35371841-35372341 2.80e-01 36_[-4(2.26e-05)]_20_[-4(2.26e-05)]_\ 26 chr5:127206226-127206726 8.42e-04 40_[+4(7.10e-05)]_27_[-7(3.25e-05)]_\ 13 chr6:138577435-138577935 6.28e-01 100 chr19:7817249-7817749 9.72e-06 28_[+1(2.23e-11)]_52 chr11:68486503-68487003 3.73e-11 10_[+1(2.77e-07)]_[+3(6.32e-12)]_\ [+8(4.58e-05)]_7 chr19:33176877-33177377 5.73e-06 5_[+9(6.05e-14)]_58 chr12:92878738-92879238 5.07e-10 16_[-1(1.42e-09)]_[+2(3.62e-11)]_42 chr12:108683540-10868404 1.30e-08 44_[-1(1.39e-11)]_[+2(2.36e-08)]_14 chr17:13420856-13421356 2.20e-03 10_[-4(1.50e-05)]_2_[+7(2.77e-06)]_\ 68 chr2:240024606-240025106 1.04e-01 26_[-7(1.11e-05)]_63 chr10:87586167-87586667 3.10e-04 20_[-4(1.50e-05)]_18_\ [+10(2.84e-07)]_37 chr19:2462936-2463436 7.07e-01 100 chr17:27695217-27695717 1.58e-11 23_[+8(2.06e-19)]_36 chr5:1950711-1951211 4.15e-01 5_[-4(1.50e-05)]_52_[-4(7.10e-05)]_\ 6_[-4(7.10e-05)]_10 chr8:37302606-37303106 2.35e-01 72_[-4(9.32e-05)]_19 chr1:68384280-68384780 1.07e-01 27_[+4(1.50e-05)]_64 chr1:232704763-232705263 2.18e-01 3_[-4(3.02e-05)]_7_[+4(2.26e-05)]_\ 72 chr9:133030678-133031178 6.13e-01 100 chr17:25919962-25920462 8.29e-03 17_[-3(8.34e-08)]_61 chr20:58650936-58651436 4.46e-01 8_[-5(6.61e-05)]_70 chr7:129031346-129031846 1.03e-12 7_[-3(1.31e-08)]_[-1(6.65e-09)]_\ [+2(2.28e-11)]_29 chr17:26885531-26886031 2.67e-01 100 chr9:129741133-129741633 5.50e-04 31_[+1(4.59e-09)]_49 chr20:38181269-38181769 5.44e-03 40_[-1(1.93e-07)]_40 chr17:9053604-9054104 2.13e-01 28_[-1(2.35e-05)]_52 chr3:43059376-43059876 1.98e-05 [+1(8.04e-10)]_80 chrX:153245074-153245574 1.03e-01 81_[+7(9.97e-05)]_8 chr20:32912455-32912955 3.50e-02 17_[+2(8.08e-05)]_28_[+1(7.89e-06)]_\ 13 chr14:104273365-10427386 2.22e-10 47_[-2(5.25e-09)]_[+1(5.08e-11)]_11 chr3:9518287-9518787 4.26e-20 11_[-2(2.85e-12)]_[+1(2.69e-11)]_\ [+3(5.08e-12)]_25 chr13:110870205-11087070 1.98e-05 64_[+3(1.37e-07)]_14 chr8:630820-631320 2.57e-01 42_[+4(3.02e-05)]_30_[+4(3.02e-05)]_\ 10 chr10:97069959-97070459 3.39e-01 100 chr19:17334506-17335006 1.21e-01 [-5(2.58e-05)]_16_[-5(1.62e-05)]_8_\ [+5(2.91e-07)]_10 chr1:93078930-93079430 1.86e-01 63_[+5(3.77e-06)]_15 chr20:24881866-24882366 1.09e-11 11_[-3(4.84e-09)]_[-1(1.30e-11)]_47 chr17:9894586-9895086 1.38e-01 35_[-1(5.22e-06)]_45 chr16:11212882-11213382 4.12e-05 42_[+1(1.34e-08)]_38 chr16:88495567-88496067 1.17e-01 42_[+1(6.31e-05)]_38 chr8:144456559-144457059 3.50e-02 4_[-7(4.60e-06)]_37_[-7(4.61e-07)]_\ 5_[-7(4.60e-06)]_21 chr10:94673535-94674035 3.72e-03 [-7(4.61e-07)]_25_[-7(4.15e-06)]_4_\ [-7(1.38e-06)]_24_[+7(2.24e-05)]_3 chr14:49861965-49862465 7.96e-01 100 chr5:174354792-174355292 5.14e-02 30_[+1(1.84e-05)]_50 chr17:63842517-63843017 6.67e-01 100 chr15:96426990-96427490 8.15e-02 100 chr17:26619785-26620285 1.42e-01 5_[+2(4.52e-05)]_73 chr1:80054109-80054609 3.13e-01 74_[-7(9.97e-05)]_15 chr19:32373716-32374216 4.67e-02 49_[-4(7.10e-05)]_42 chr2:71540993-71541493 3.84e-08 24_[-2(6.05e-08)]_[+1(2.77e-07)]_2_\ [+3(4.33e-05)]_10 chr1:229221452-229221952 3.74e-03 6_[-3(7.40e-05)]_16_[+10(4.65e-06)]_\ 40 chrX:73944028-73944528 2.74e-01 35_[-5(7.16e-05)]_43 chr9:38097747-38098247 6.24e-05 51_[-2(2.76e-05)]_[+1(9.91e-08)]_7 chr19:50398502-50399002 5.76e-01 100 chr16:203025-203525 2.50e-15 8_[-3(5.15e-14)]_[-1(3.16e-09)]_\ [+2(1.20e-09)]_28 chr12:6662876-6663376 6.79e-01 100 chr19:45260889-45261389 6.34e-06 25_[-1(2.44e-09)]_[+2(1.30e-07)]_33 chrX:1479766-1480266 1.01e-14 26_[-3(1.33e-10)]_[-1(6.44e-12)]_\ [+2(3.39e-08)]_10 chr6:34965451-34965951 2.15e-04 43_[-1(4.00e-08)]_37 chrUn_KI270466v1:195-695 1.03e-06 31_[+8(2.46e-14)]_28 chr22:19848999-19849499 5.68e-06 34_[-6(2.53e-05)]_10_[+1(7.38e-08)]_\ 4 chr17:40503412-40503912 8.10e-10 43_[-2(7.33e-12)]_[+1(5.22e-09)]_15 chr16:50177101-50177601 8.67e-17 20_[-2(1.95e-11)]_[+1(1.30e-11)]_\ [+3(5.85e-10)]_16 chrUn_KI270467v1:3134-36 1.67e-06 37_[+8(1.01e-14)]_22 chr3:126359250-126359750 1.77e-05 31_[+1(5.08e-11)]_49 chr19:3730917-3731417 2.33e-01 41_[+1(1.52e-05)]_39 chr2:109505730-109506230 1.78e-03 44_[+1(5.88e-09)]_36 chr19:18250279-18250779 6.61e-03 45_[+1(4.31e-07)]_35 chr1:47861402-47861902 4.69e-17 21_[-3(2.76e-11)]_[-1(2.07e-10)]_\ [+2(5.38e-11)]_15 chr10:93208985-93209485 2.26e-01 23_[-7(3.71e-06)]_66 chrUn_KI270467v1:2615-31 1.02e-06 9_[+8(1.59e-15)]_1_[+8(1.56e-12)]_8 chr1:236372410-236372910 5.59e-12 37_[-2(1.31e-11)]_[+1(3.33e-11)]_21 chr17:77233791-77234291 7.76e-02 8_[+7(2.04e-05)]_3_[+7(1.41e-05)]_\ 15_[+7(2.04e-05)]_4_[+7(1.41e-05)]_15_[+7(2.04e-05)] chrUn_KI270467v1:2001-25 1.38e-07 2_[+8(6.35e-11)]_1_[+8(2.57e-15)]_\ 15 chr19:3729060-3729560 2.88e-01 44_[-1(1.52e-05)]_36 chr22:31102210-31102710 2.50e-03 13_[-4(3.02e-05)]_21_[+1(5.57e-07)]_\ 37 chr1:236097023-236097523 2.00e-01 11_[+4(2.26e-05)]_20_[+4(2.26e-05)]_\ 20_[+4(2.26e-05)]_22 chr19:5482309-5482809 3.03e-02 39_[-1(4.31e-07)]_41 chr1:85014547-85015047 8.92e-13 35_[-2(9.58e-12)]_[+1(1.50e-10)]_23 chr16:27525014-27525514 3.05e-01 30_[+1(4.77e-05)]_50 chr17:78558305-78558805 7.01e-02 7_[-7(4.61e-07)]_11_[-7(4.61e-07)]_\ 11_[-7(1.38e-06)]_38 chr19:10604677-10605177 3.86e-02 49_[-1(9.65e-06)]_31 chr17:26603652-26604152 6.74e-01 100 chr22:39634112-39634612 3.21e-01 29_[+1(4.25e-05)]_51 chr16:22258560-22259060 2.45e-03 44_[-1(3.95e-07)]_36 chr16:1271736-1272236 3.43e-02 33_[+10(2.50e-08)]_22_\ [+10(2.50e-08)]_13 chr1:110232853-110233353 6.17e-04 58_[+1(5.57e-07)]_22 chr16:11584524-11585024 1.16e-02 32_[+1(1.20e-08)]_48 chr7:99030005-99030505 2.61e-01 100 chr19:6746763-6747263 1.02e-06 26_[-1(3.60e-08)]_[+2(3.02e-07)]_32 chr19:40205235-40205735 4.37e-02 100 chr19:4657989-4658489 4.13e-03 32_[-1(3.31e-07)]_48 chr1:125179941-125180441 3.61e-01 52_[+3(6.40e-05)]_26 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: kadru ********************************************************************************