# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 598 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 17:37:39 PDT 2018)
#   negatives: 598 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 17:37:40 PDT 2018)
#        host: kadru
#        when: Thu May 10 18:33:02 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.239 C 0.261 G 0.259 T 0.242


MOTIF RTGACTCA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    RTGACTCA   TGAGTCAY         68          5   3.0e-016   9.9e-012
#         GTGACTCA   TGAGTCAC         38          2   4.3e-010   1.4e-005
#         ATGACTCA   TGAGTCAT         34          3   4.1e-008   1.4e-003

letter-probability matrix: alength= 4 w= 8 nsites= 98 E= 9.9e-012
0.500000 0.000000 0.500000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CAGGYCC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CAGGYCC    GGRCCTG         63         13   8.4e-010   2.8e-005
#          CAGGCCC    GGGCCTG         47         12   1.5e-006   5.0e-002
#          CAGGTCC    GGACCTG         17          1   6.5e-005   2.2e+000

letter-probability matrix: alength= 4 w= 7 nsites= 68 E= 2.8e-005
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.705882 0.000000 0.294118
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF TGACNTCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGACNTCA   TGANGTCA         61         13   2.5e-009   8.3e-005
#         TGACGTCA   TGACGTCA         17          0   6.8e-006   2.2e-001
#         TGACCTCA   TGAGGTCA         14          3   6.1e-003   2.0e+002
#         TGACTTCA   TGAAGTCA         12          2   6.2e-003   2.0e+002
#         TGACATCA   TGATGTCA         22          8   7.4e-003   2.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 93 E= 8.3e-005
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.483871 0.193548 0.193548 0.129032
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GTTTTAY DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GTTTTAY    RTAAAAC         45          7   1.9e-008   6.1e-004
#          GTTTTAT    ATAAAAC         21          0   4.0e-007   1.3e-002
#          GTTTTAC    GTAAAAC         25          7   9.2e-004   3.0e+001

letter-probability matrix: alength= 4 w= 7 nsites= 47 E= 6.1e-004
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.553191 0.000000 0.446809


# Stopping reason: E-value threshold exceeded
#    Running time: 23.86 seconds