******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr17:996793-997293 1.0000 100 chr1:38591928-38592428 1.0000 100 chr3:170338717-170339217 1.0000 100 chr13:17742611-17743111 1.0000 100 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chr5:175831876-175832376 1.0000 100 chr18:48944572-48945072 1.0000 100 chr5:68932755-68933255 1.0000 100 chr22:19316669-19317169 1.0000 100 chr22:23944162-23944662 1.0000 100 chr2:46540597-46541097 1.0000 100 chr21:44393387-44393887 1.0000 100 chr12:2810208-2810708 1.0000 100 chrX:53639232-53639732 1.0000 100 chr20:58916634-58917134 1.0000 100 chr14:98909168-98909668 1.0000 100 chr1:90055231-90055731 1.0000 100 chr1_KI270709v1_random:7 1.0000 100 chr6:28643344-28643844 1.0000 100 chr16:88496764-88497264 1.0000 100 chr11:75710193-75710693 1.0000 100 chr11:1418126-1418626 1.0000 100 chr9:11167-11667 1.0000 100 chr21:29217686-29218186 1.0000 100 chr10:86759526-86760026 1.0000 100 chr17:64325603-64326103 1.0000 100 chr7:135871663-135872163 1.0000 100 chr1:42602446-42602946 1.0000 100 chr21:43309827-43310327 1.0000 100 chr4:184011189-184011689 1.0000 100 chr19:7817249-7817749 1.0000 100 chr11:68486503-68487003 1.0000 100 chr12:92878738-92879238 1.0000 100 chr12:108683540-10868404 1.0000 100 chr17:13420856-13421356 1.0000 100 chr17:25919962-25920462 1.0000 100 chr7:129031346-129031846 1.0000 100 chr17:26885531-26886031 1.0000 100 chr9:129741133-129741633 1.0000 100 chr3:43059376-43059876 1.0000 100 chr20:32912455-32912955 1.0000 100 chr14:104273365-10427386 1.0000 100 chr3:9518287-9518787 1.0000 100 chr10:97069959-97070459 1.0000 100 chr20:24881866-24882366 1.0000 100 chr17:9894586-9895086 1.0000 100 chr16:88495567-88496067 1.0000 100 chr5:174354792-174355292 1.0000 100 chr15:96426990-96427490 1.0000 100 chr17:26619785-26620285 1.0000 100 chr2:71540993-71541493 1.0000 100 chr9:38097747-38098247 1.0000 100 chr16:203025-203525 1.0000 100 chr19:45260889-45261389 1.0000 100 chrX:1479766-1480266 1.0000 100 chr6:34965451-34965951 1.0000 100 chrUn_KI270466v1:195-695 1.0000 100 chr22:19848999-19849499 1.0000 100 chr17:40503412-40503912 1.0000 100 chr16:50177101-50177601 1.0000 100 chrUn_KI270467v1:3134-36 1.0000 100 chr3:126359250-126359750 1.0000 100 chr19:3730917-3731417 1.0000 100 chr2:109505730-109506230 1.0000 100 chr19:18250279-18250779 1.0000 100 chr1:47861402-47861902 1.0000 100 chr10:93208985-93209485 1.0000 100 chrUn_KI270467v1:2615-31 1.0000 100 chr1:236372410-236372910 1.0000 100 chr17:77233791-77234291 1.0000 100 chrUn_KI270467v1:2001-25 1.0000 100 chr19:3729060-3729560 1.0000 100 chr1:236097023-236097523 1.0000 100 chr19:5482309-5482809 1.0000 100 chr1:85014547-85015047 1.0000 100 chr16:27525014-27525514 1.0000 100 chr19:10604677-10605177 1.0000 100 chr17:26603652-26604152 1.0000 100 chr22:39634112-39634612 1.0000 100 chr16:22258560-22259060 1.0000 100 chr1:110232853-110233353 1.0000 100 chr19:6746763-6747263 1.0000 100 chr19:40205235-40205735 1.0000 100 chr19:4657989-4658489 1.0000 100 chr1:125179941-125180441 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 597 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 59700 N= 597 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.280 C 0.220 G 0.220 T 0.280 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/background): A 0.284 C 0.216 G 0.216 T 0.284 ******************************************************************************** ******************************************************************************** MOTIF AMAMARAARGCWCCAGGCCCWG MEME-1 width = 22 sites = 126 llr = 1975 E-value = 3.1e-378 ******************************************************************************** -------------------------------------------------------------------------------- Motif AMAMARAARGCWCCAGGCCCWG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 646596a972:5:171:2::61 pos.-specific C 23231:::::7297:::8991: probability G :111:4::372:::19a::::8 matrix T 2111:1:1:1:3121::1::3: bits 2.2 2.0 * 1.8 * ** 1.5 * * ** ** Relative 1.3 * ** * ** ** Entropy 1.1 * ***** * ***** * (22.6 bits) 0.9 * ***** ** ***** * 0.7 ******* ******** * 0.4 * ******************** 0.2 ********************** 0.0 ---------------------- Multilevel AAAAAAAAAGCACCAGGCCCAG consensus CC C G GA T T sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMAMARAARGCWCCAGGCCCWG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr7:93721144-93721644 - 37 1.07e-13 TAATAACTTA AAAAAAAAAGCACCAGGCCCAG GTGGTTTCAC chr1:236372410-236372910 - 69 5.21e-13 TAACCTTCCA AAACAGAAAGCACCAGGCCCAG ATGGATTTAC chr1:42602446-42602946 + 15 5.21e-13 taaccttcta aaacagaaagcaccaggcccag atggtttcac chr8:28613369-28613869 - 37 5.21e-13 TAACCTTCCA AAACAGAAAGCACCAGGCCCAG ATGGTTTCAC chr7:44302021-44302521 + 49 5.21e-13 taattttcca aaacagaaagcaccaggcccag attggttcat chr1:15267313-15267813 - 62 5.21e-13 TAACCTTCTA AAACAGAAAGCACCAGGCCCAG ATGGGTTCCC chr6:20687020-20687520 - 75 5.21e-13 TCTA AAACAGAAAGCACCAGGCCCAG ATTGGTTCAC chr11:10045599-10046099 + 31 5.21e-13 taactttcca aaacagaaagcaccaggcccag atggattgac chrX:1479766-1480266 + 38 1.45e-12 taaccttccc aaacaaaaggctccaggcccag atgggtttac chr1:47861402-47861902 + 33 1.85e-12 gaatcttcca aaacaaaaagcaccaggccctg atggattcac chr3:60703573-60704073 - 40 7.21e-12 ATGTACCACT AGAAAAAAGGCACCAGGCCCAG ATAGTTTTAC chr4:1120371-1120871 + 36 8.91e-12 aaactttcca aagcagaaagcaccaggcccag atgggttcac chr10:2514907-2515407 + 34 8.91e-12 taatcttcca aaaaagaaaacaccaggcccag atggttttac chr16:50177101-50177601 - 52 1.12e-11 TAACCTTCTA AAGCAAAAGGCACCAGGCCCAG ATGGGTTCAC chr14:104273365-10427386 - 79 1.12e-11 . AAAAAGAAAGCACTAGGCCCAG ATGGTTTCAC chr14:104060272-10406077 - 29 1.12e-11 TAACTTTACA AAAAAGAAAGCACTAGGCCCAG ATGGTTTCAC chr20:24881866-24882366 + 23 1.39e-11 aaatcttttc aaataaaaagcaccaggcccag atggctttac chr17:40503412-40503912 - 75 2.00e-11 TCCA AAACAGAAAGCACCAGGACCAG ACAGTTTTAC chr3:9518287-9518787 - 43 2.41e-11 TAACCTTCCA AAAGAGAAAGCACCAGGCCCTG ATGGGTTCAC chrX:12189080-12189580 + 11 4.06e-11 taacctcccc aaacataaagcaccaggcccag atgggttcac chr19:34822732-34823232 + 5 4.87e-11 tcca aaacagaaagcactaggccctg gtgcttttac chr2:25861267-25861767 + 17 1.13e-10 taacctttca aaacagaaagcctcaggcccag atgggtttac chr11:75710193-75710693 - 45 1.33e-10 AAATTATCCC ACAAAAAAAGCACCAGGCACAG ACAGTTTCAC chr1:243638999-243639499 + 52 1.33e-10 atacctttca tcaaagaaaactccaggcccag atggtttcac chr15:95851769-95852269 + 4 1.56e-10 ctc aaagaaaaagcaccaggcccaa atggttttac chr17:2628448-2628948 - 63 1.82e-10 GAAATTACCA ACAAAAAAAGGTCCAGGACCAG ACGGATTCAC chr13:51712756-51713256 + 40 1.82e-10 aaaccttccc acaaagaaagctccaggcccac atgcctttac chr6:29543656-29544156 - 66 2.12e-10 CATATCTTCC CACAAAAAAGGCCCAGGCCCAG ATGTCTCTAC chr12:92878738-92879238 + 6 2.47e-10 ttccc aaaaagaaagctccaagcccag atggttttac chr8:27831648-27832148 + 31 2.86e-10 aactcttcct actaagaaaactccaggcccag atagctttac chr9:134312146-134312646 - 43 3.85e-10 GAAATCTTTC CAGAAGAAAACTCCAGGCCCAG ATGGTTTCAC chr19:7817249-7817749 - 38 4.43e-10 AGATCTAATA AGAAGAAAGGCACCAGGCCCAG ATAGTTTTAT chr2:65626187-65626687 + 21 5.11e-10 agacctccac tccaaaaaggcacctggcccag acagttttac chr21:37611143-37611643 + 20 6.77e-10 taacctcccc aaccagaaagcacttggcccag atgggttcac chr3:126359250-126359750 - 41 8.92e-10 GAAAGATCAC TCCAAAAAGGCACCAGGCCCAA ATGGTTTTAT chr12:108683540-10868404 + 34 1.73e-09 aatcagcaaa taccaaaaaacactaggcccag atggttttac chr15:101682553-10168305 - 4 1.73e-09 AAACCTTCCT ACACAGAAAACTCCAGGCCAAG ATG chr22:23944162-23944662 + 7 1.97e-09 aattcc acaaagaaaagcccaggaccag atggttttac chr22:50211977-50212477 - 79 1.97e-09 . ACAAAGAAAAGCCCAGGACCAG ATGGCTTCAC chr16:47217265-47217765 - 40 2.24e-09 TTAAACCTTT ACAAAAAAGGCTCTGGGACCAG CTGGTTTTAT chr16:203025-203525 + 20 2.54e-09 taaccttcca aaacagaaagcatcaggtccag atgggtttac chr7:135871663-135872163 - 60 2.54e-09 TCCTGAAAGA AAAAAAAAGACCCCAGGCCCAT ATGGTTTTAC chr10:11420063-11420563 + 41 2.54e-09 ttaacaacca atataaaaggcacaaggcccag atgggctcac chr7:131358430-131358930 - 23 3.25e-09 TAATCTTCCA AAAAGAAAATCTCCAGGCCCAG ATGGTTTCAC chr10:72438673-72439173 + 46 3.25e-09 tagcctacca accaaaaaaagtccaggaccag acggattcac chr19:45260889-45261389 + 15 3.68e-09 TACACCATAc acgcaaaagacaccgggccccg atggtcttac chr7:75858110-75858610 - 76 3.68e-09 CCA ACAAATAAAGGTCCAGGACCAG ATGGTTTTAT chr16:88495567-88496067 - 52 5.94e-09 ATTTGGTTAC CAGGAAAAAGCTCTAGGCCCCG AGACGCCTCC chr21:44393387-44393887 - 64 5.94e-09 TACCAATTAA AAAAAAAAGGCACTGGGTCCAG ATGGACTCAC chr3:52508773-52509273 - 52 5.94e-09 AAGACCTAGC CCCTAAAAGGCACCTGGCCCTG GAGGCTTTAT chr1:90055231-90055731 + 31 6.68e-09 atatccctcc cctcaaaaagccccaggcctag gtggttttat chr15:96240919-96241419 - 66 6.68e-09 ATACCTTGCA TTAAAAAAGGCACCAGACCCAG ATGGTTTTAC chr17:64771859-64772359 + 13 6.68e-09 aaatctgcca ctgaaaaaggcaccaggtccag agggtttcaT chr3:43059376-43059876 - 10 1.06e-08 GTAAAAGATC TAGCAAAAGGCACAGGGCCCAG ATGGTTTTA chr20:58934679-58935179 + 29 1.06e-08 aaatctccca ccaaagaaaagcccaggacctg atggcttcac chr15:68760957-68761457 + 37 1.06e-08 ttaactcaca agaaagaaatcttcaggcccag atggttttac chr1:62626544-62627044 + 26 1.18e-08 aaaacttacc acaaagaaaagaccaggccatg acaggttcac chr5:175831876-175832376 + 28 1.32e-08 tgtcctagcc accaaaaaggttcctggccctg aaagtggtac chr3:136065928-136066428 + 28 1.32e-08 tacaaaactg cacaaaaaagcacaaagcccag gtagttttac chr5:77799798-77800298 + 17 1.32e-08 caacctttca aaacagaaagcacaaggctctg atgggtttat chr6:85587672-85588172 + 5 1.84e-08 ttgc caataaaaggcccctggcccaa atggttttac chr12:40200633-40201133 + 44 1.84e-08 aaatctctca tcaaagaaaagcccaggacctg atggctgtac chr1:182465455-182465955 + 26 2.28e-08 caatctcctg acaaagaaaagtcctggacctg atggttttac chr10:92851996-92852496 + 46 2.53e-08 aagccttccc caaaaggaaactctaggcccag atagttttac chr2:27424441-27424941 - 25 2.53e-08 AAAAAATTTT TAAAAAAAGGCACCTGGCCACG GTGGTTCATG chr6:28643344-28643844 - 60 3.12e-08 CTCCCACTTT CCAGAAAAGGCTCCAGGGCCTG AGAGACCTTG chr10:22952316-22952816 + 29 3.12e-08 aaactttctc acaaacaaaactccaggtccag atggttttac chr16:3843494-3843994 + 58 3.47e-08 ACTtcctagg gaaaaaaaggcttcaggcccac atcactgtaa chr2:8983204-8983704 + 14 3.47e-08 taaaatctag aaaaaaacatctctaggcccag atggttttac chr9:127829519-127830019 - 50 3.84e-08 CAGGCATCCA AGCAAAATGGCACCTGGCCCCG AGAGGTGCTT chr5:180146654-180147154 - 78 4.26e-08 A CAACAAAAAAGTCCTGGACCTG GTGGTTTCAC chr7:144162898-144163398 - 35 4.71e-08 TAACTTTCCC GAACAAAAAGTACAAGGCCCTG ATGGCTTCAC chr11:275366-275866 - 56 5.21e-08 TGACCTTCCA AACCAAAAAGCATTAGACCCAG ATGGTTTTAC chr19:28696653-28697153 + 9 5.21e-08 aaattcca aaagataaatctcctggcccag acggtttcat chr1:85014547-85015047 - 67 5.76e-08 TGAATAACCT TCCAAAACAGCACTGGGCCCAG ATGGTTTTAC chr21:43309827-43310327 + 39 6.36e-08 AACAACAAAG CTACAAATGGctccaggcccgg atagtttcac chr15:73310262-73310762 - 21 6.36e-08 AATGCTTCCC ACAAAGAAAGGCCCAAGCCCCA ATGGCTTTAT chr11:113914633-11391513 - 37 6.36e-08 TTACCTTCCC ACAAAGAAAGCTCCAGACCCCT ATAGTTTTAC chr5:6063270-6063770 + 36 6.36e-08 ttcaccttcc aaaacaaaagcatcaggcactg ataggttcac chr2:109505730-109506230 - 54 7.02e-08 GTGATTTGAA TGTAAAACGGCACCAGGCCCTG ATGGGTTGCT chr4:184011189-184011689 - 73 7.02e-08 AGTTAC GTGCATAAAGCCCCAGGCCCCG CTAGGCGCAT chr1:110232853-110233353 - 68 7.74e-08 AGAACATCAG ACCCAGATGGCTCTGGGCCCCG AGGGTCGCAT chr1:38591928-38592428 - 39 8.53e-08 AAGAGCTATC TTCCAAAAGGCACCAGGCCAAA TGGTTTTACA chr6:136457132-136457632 + 9 9.39e-08 atcccctg ccccaaaaaagctcaggaccag atggcttcac chr5:178218517-178219017 + 37 1.03e-07 ttaaatatct tcccacaaaacacaaggcccag atggctttat chr1:22440872-22441372 - 28 1.03e-07 AAATATCCTG ACAAAGAAAAGCCCTGGACCAA ATGGCTTTAC chr12:113501885-11350238 + 51 1.14e-07 TTACcttgcc ataaaaaaagaaccacgcccag acagtcttac chr1:9801161-9801661 + 64 1.25e-07 taaccttcca aaacgaaaagtaccagacccag atgggttcac chr9:89857773-89858273 + 9 1.65e-07 atctccca acaaagaaaagcctaggaccta atggttttac chr7:129031346-129031846 + 19 1.81e-07 aaacttccca atgaagaaaagcccaggaccaa atggctttac chr9:129741133-129741633 - 41 2.17e-07 CTGAGTTTGG CCTGAGAAAGATCTAGGCCCTG CTGGGTTTAC chr7:75998991-75999491 + 8 2.17e-07 ccttcca aaacagaaagcacccagcctag atgggtttat chr3:193246764-193247264 - 15 2.60e-07 CAATCTCCCA CCAAAGGAAAGCCCAGGACCTG ATGGCTTCAC chr19:4657989-4658489 + 22 2.84e-07 CAGACTCCCA TGTGAAAAGGCCCCAGGCACTG AAAGTCTTAC chr6:4657943-4658443 + 11 2.84e-07 tctcacacac acacaaaaagtaccaagccccc atgggtttac chr19:18250279-18250779 - 55 3.10e-07 TGAGAACAGA TTTTAAAAGGCTCTGGGCCCTG GTGGGTGTCT chr13:48330458-48330958 + 18 3.10e-07 aatctaccaa tagagaaaagcctcaggacctg atggcttcac chr6:129945973-129946473 - 50 3.38e-07 AAAGATCAAT CTCAGAAAGGCACCAGTCCCAG ATGGTTTTAC chr10:121150989-12115148 - 30 3.38e-07 AAAATATCTC CTAACAAAAAGCTCAGGCCCTG GTGGCTTCAC chr10:98148725-98149225 - 63 3.69e-07 AAGTCTCCCA TTAAAGAAAAGCTCAGGACCTG ATGGCTTCAC chr22:39634112-39634612 - 39 4.03e-07 CGAAAAAGCC ATGGAAATGGCTCTGGGCCCTG CTCCACTTAC chr17:64325603-64326103 - 58 4.39e-07 ACAGTGTGGG TCAGATAAGGGTCCAGGCACTG ATAGGTGGAT chr9:128134047-128134547 - 56 4.39e-07 AAATCTCCCA AGAAAGAAAAGCCTAGGACCTA ATGGTTTTAC chr1:174212817-174213317 + 40 4.39e-07 aaagtgtcct agcaaaaaaagcctgggacctg atggcttcac chr11:68486503-68487003 - 20 5.66e-07 TAACCTTCTA AAATAGAAAGCACTAGGCGCAC ATGGGTTCAC chr17:12700636-12701136 - 44 5.66e-07 ATACACACAC ATACAAAAATATTCAGGCCCCG GCAGTCTTAC chr8:144834879-144835379 - 64 6.15e-07 AGACTTTCCT TCCCCAAAAGCTCAAGGTCCCG ATGGTTTTAC chr20:25385449-25385949 + 63 7.26e-07 taaataaata aatagaaaggcaccaggcttag acagttttac chr21:37147269-37147769 - 52 1.00e-06 CTTCTGATAG CAACAAATGGCATCTGGCACTG GAGGGAACTT chr10:86759526-86760026 - 65 1.61e-06 AAGTCCTCTC CAGAAAAAAGATCTAGGCCTAA ATGGTCACAT chr11:62832615-62833115 + 73 1.61e-06 CTTTCTCCCA TCACAAAAGGCTCAGGGTCATG GTGGGT chr20:32912455-32912955 - 77 1.88e-06 CA GAGAAAATGGCTCTGGGCCCTA AATGTCTTCC chr1:210334718-210335218 + 39 2.19e-06 aaacctttcc atagcaaaattttcaggcccag atggctttac chr7:5350639-5351139 + 63 2.36e-06 GAGACCAGGG GTGTCAAAGGCTCTGGGCCCTG CACTGCCTAC chr19:6746763-6747263 + 16 2.54e-06 tcaaagatct ccccaataatcccaaggccccg acggttttac chr16:27525014-27525514 - 40 2.54e-06 GTGGCAAGGA AGAAAAAAGGCTCACGGAACTG AGAGGTGTCC chr19:10604677-10605177 + 39 2.94e-06 CAAGGGAAAT GGGGAAATGGCTCTGGGCCCCG GCGGATGTCA chr1:214045158-214045658 + 41 2.94e-06 TCCTCTCCTC TCCCCAAAGGCACCTGGCCTTC AGAGTTTTAT chr12:2810208-2810708 - 49 4.23e-06 TGGCCAGGTC CATTAAAAGGCACTGGGTCCCA CAGGTATTCC chr15:100936761-10093726 - 56 4.23e-06 GACATCTACC CATTAAAAAGCACCAGGCCTGT ATGGTTTTAT chr16:22258560-22259060 + 34 4.54e-06 AGACATGCTA ATCGAAAAGGTTCATggcccca gtggttttat chr3:129036876-129037376 + 20 4.87e-06 TGCTGCAGCT CCTGCAGAGGCTCCGGGACCTG GTAGGCTCAC chr10:92602130-92602630 - 54 6.01e-06 AAATCTCCTG ACAAAGAAAAGCCCTAGATCTG ATAGTTTCAT chr5:54623104-54623604 - 47 7.90e-06 TGAAGACACT CGTGAAAAGGCTCCTGGCTCTT TGAGTTTTAC chr14:92033351-92033851 - 51 1.03e-05 TCTTACAGTT AGAAATAAGGCCTAAAGCCCCA GTTGAGTAAG chr14:100286859-10028735 + 75 1.25e-05 TAAGAAATGA CTCACTAAAGGCCCAGGCCAAT GATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMAMARAARGCWCCAGGCCCWG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:93721144-93721644 1.1e-13 36_[-1]_42 chr1:236372410-236372910 5.2e-13 68_[-1]_10 chr1:42602446-42602946 5.2e-13 14_[+1]_64 chr8:28613369-28613869 5.2e-13 36_[-1]_42 chr7:44302021-44302521 5.2e-13 48_[+1]_30 chr1:15267313-15267813 5.2e-13 61_[-1]_17 chr6:20687020-20687520 5.2e-13 74_[-1]_4 chr11:10045599-10046099 5.2e-13 30_[+1]_48 chrX:1479766-1480266 1.5e-12 37_[+1]_41 chr1:47861402-47861902 1.9e-12 32_[+1]_46 chr3:60703573-60704073 7.2e-12 39_[-1]_39 chr4:1120371-1120871 8.9e-12 35_[+1]_43 chr10:2514907-2515407 8.9e-12 33_[+1]_45 chr16:50177101-50177601 1.1e-11 51_[-1]_27 chr14:104273365-10427386 1.1e-11 78_[-1] chr14:104060272-10406077 1.1e-11 28_[-1]_50 chr20:24881866-24882366 1.4e-11 22_[+1]_56 chr17:40503412-40503912 2e-11 74_[-1]_4 chr3:9518287-9518787 2.4e-11 42_[-1]_36 chrX:12189080-12189580 4.1e-11 10_[+1]_68 chr19:34822732-34823232 4.9e-11 4_[+1]_74 chr2:25861267-25861767 1.1e-10 16_[+1]_62 chr11:75710193-75710693 1.3e-10 44_[-1]_34 chr1:243638999-243639499 1.3e-10 51_[+1]_27 chr15:95851769-95852269 1.6e-10 3_[+1]_75 chr17:2628448-2628948 1.8e-10 62_[-1]_16 chr13:51712756-51713256 1.8e-10 39_[+1]_39 chr6:29543656-29544156 2.1e-10 65_[-1]_13 chr12:92878738-92879238 2.5e-10 5_[+1]_73 chr8:27831648-27832148 2.9e-10 30_[+1]_48 chr9:134312146-134312646 3.8e-10 42_[-1]_36 chr19:7817249-7817749 4.4e-10 37_[-1]_41 chr2:65626187-65626687 5.1e-10 20_[+1]_58 chr21:37611143-37611643 6.8e-10 19_[+1]_59 chr3:126359250-126359750 8.9e-10 40_[-1]_38 chr12:108683540-10868404 1.7e-09 33_[+1]_45 chr15:101682553-10168305 1.7e-09 3_[-1]_75 chr22:23944162-23944662 2e-09 6_[+1]_72 chr22:50211977-50212477 2e-09 78_[-1] chr16:47217265-47217765 2.2e-09 39_[-1]_39 chr16:203025-203525 2.5e-09 19_[+1]_59 chr7:135871663-135872163 2.5e-09 59_[-1]_19 chr10:11420063-11420563 2.5e-09 40_[+1]_38 chr7:131358430-131358930 3.3e-09 22_[-1]_56 chr10:72438673-72439173 3.3e-09 45_[+1]_33 chr19:45260889-45261389 3.7e-09 14_[+1]_64 chr7:75858110-75858610 3.7e-09 75_[-1]_3 chr16:88495567-88496067 5.9e-09 51_[-1]_27 chr21:44393387-44393887 5.9e-09 63_[-1]_15 chr3:52508773-52509273 5.9e-09 51_[-1]_27 chr1:90055231-90055731 6.7e-09 30_[+1]_48 chr15:96240919-96241419 6.7e-09 65_[-1]_13 chr17:64771859-64772359 6.7e-09 12_[+1]_66 chr3:43059376-43059876 1.1e-08 9_[-1]_69 chr20:58934679-58935179 1.1e-08 28_[+1]_50 chr15:68760957-68761457 1.1e-08 36_[+1]_42 chr1:62626544-62627044 1.2e-08 25_[+1]_53 chr5:175831876-175832376 1.3e-08 27_[+1]_51 chr3:136065928-136066428 1.3e-08 27_[+1]_51 chr5:77799798-77800298 1.3e-08 16_[+1]_62 chr6:85587672-85588172 1.8e-08 4_[+1]_74 chr12:40200633-40201133 1.8e-08 43_[+1]_35 chr1:182465455-182465955 2.3e-08 25_[+1]_53 chr10:92851996-92852496 2.5e-08 45_[+1]_33 chr2:27424441-27424941 2.5e-08 24_[-1]_54 chr6:28643344-28643844 3.1e-08 59_[-1]_19 chr10:22952316-22952816 3.1e-08 28_[+1]_50 chr16:3843494-3843994 3.5e-08 57_[+1]_21 chr2:8983204-8983704 3.5e-08 13_[+1]_65 chr9:127829519-127830019 3.8e-08 49_[-1]_29 chr5:180146654-180147154 4.3e-08 77_[-1]_1 chr7:144162898-144163398 4.7e-08 34_[-1]_44 chr11:275366-275866 5.2e-08 55_[-1]_23 chr19:28696653-28697153 5.2e-08 8_[+1]_70 chr1:85014547-85015047 5.8e-08 66_[-1]_12 chr21:43309827-43310327 6.4e-08 38_[+1]_40 chr15:73310262-73310762 6.4e-08 20_[-1]_58 chr11:113914633-11391513 6.4e-08 36_[-1]_42 chr5:6063270-6063770 6.4e-08 35_[+1]_43 chr2:109505730-109506230 7e-08 53_[-1]_25 chr4:184011189-184011689 7e-08 72_[-1]_6 chr1:110232853-110233353 7.7e-08 67_[-1]_11 chr1:38591928-38592428 8.5e-08 38_[-1]_40 chr6:136457132-136457632 9.4e-08 8_[+1]_70 chr5:178218517-178219017 1e-07 36_[+1]_42 chr1:22440872-22441372 1e-07 27_[-1]_51 chr12:113501885-11350238 1.1e-07 50_[+1]_28 chr1:9801161-9801661 1.2e-07 63_[+1]_15 chr9:89857773-89858273 1.7e-07 8_[+1]_70 chr7:129031346-129031846 1.8e-07 18_[+1]_60 chr9:129741133-129741633 2.2e-07 40_[-1]_38 chr7:75998991-75999491 2.2e-07 7_[+1]_71 chr3:193246764-193247264 2.6e-07 14_[-1]_64 chr19:4657989-4658489 2.8e-07 21_[+1]_57 chr6:4657943-4658443 2.8e-07 10_[+1]_68 chr19:18250279-18250779 3.1e-07 54_[-1]_24 chr13:48330458-48330958 3.1e-07 17_[+1]_61 chr6:129945973-129946473 3.4e-07 49_[-1]_29 chr10:121150989-12115148 3.4e-07 29_[-1]_49 chr10:98148725-98149225 3.7e-07 62_[-1]_16 chr22:39634112-39634612 4e-07 38_[-1]_40 chr17:64325603-64326103 4.4e-07 57_[-1]_21 chr9:128134047-128134547 4.4e-07 55_[-1]_23 chr1:174212817-174213317 4.4e-07 39_[+1]_39 chr11:68486503-68487003 5.7e-07 19_[-1]_59 chr17:12700636-12701136 5.7e-07 43_[-1]_35 chr8:144834879-144835379 6.2e-07 63_[-1]_15 chr20:25385449-25385949 7.3e-07 62_[+1]_16 chr21:37147269-37147769 1e-06 51_[-1]_27 chr10:86759526-86760026 1.6e-06 64_[-1]_14 chr11:62832615-62833115 1.6e-06 72_[+1]_6 chr20:32912455-32912955 1.9e-06 76_[-1]_2 chr1:210334718-210335218 2.2e-06 38_[+1]_40 chr7:5350639-5351139 2.4e-06 62_[+1]_16 chr19:6746763-6747263 2.5e-06 15_[+1]_63 chr16:27525014-27525514 2.5e-06 39_[-1]_39 chr19:10604677-10605177 2.9e-06 38_[+1]_40 chr1:214045158-214045658 2.9e-06 40_[+1]_38 chr12:2810208-2810708 4.2e-06 48_[-1]_30 chr15:100936761-10093726 4.2e-06 55_[-1]_23 chr16:22258560-22259060 4.5e-06 33_[+1]_45 chr3:129036876-129037376 4.9e-06 19_[+1]_59 chr10:92602130-92602630 6e-06 53_[-1]_25 chr5:54623104-54623604 7.9e-06 46_[-1]_32 chr14:92033351-92033851 1e-05 50_[-1]_28 chr14:100286859-10028735 1.3e-05 74_[+1]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMAMARAARGCWCCAGGCCCWG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AMAMARAARGCWCCAGGCCCWG width=22 seqs=126 chr7:93721144-93721644 ( 37) AAAAAAAAAGCACCAGGCCCAG 1 chr1:236372410-236372910 ( 69) AAACAGAAAGCACCAGGCCCAG 1 chr1:42602446-42602946 ( 15) AAACAGAAAGCACCAGGCCCAG 1 chr8:28613369-28613869 ( 37) AAACAGAAAGCACCAGGCCCAG 1 chr7:44302021-44302521 ( 49) AAACAGAAAGCACCAGGCCCAG 1 chr1:15267313-15267813 ( 62) AAACAGAAAGCACCAGGCCCAG 1 chr6:20687020-20687520 ( 75) AAACAGAAAGCACCAGGCCCAG 1 chr11:10045599-10046099 ( 31) AAACAGAAAGCACCAGGCCCAG 1 chrX:1479766-1480266 ( 38) AAACAAAAGGCTCCAGGCCCAG 1 chr1:47861402-47861902 ( 33) AAACAAAAAGCACCAGGCCCTG 1 chr3:60703573-60704073 ( 40) AGAAAAAAGGCACCAGGCCCAG 1 chr4:1120371-1120871 ( 36) AAGCAGAAAGCACCAGGCCCAG 1 chr10:2514907-2515407 ( 34) AAAAAGAAAACACCAGGCCCAG 1 chr16:50177101-50177601 ( 52) AAGCAAAAGGCACCAGGCCCAG 1 chr14:104273365-10427386 ( 79) AAAAAGAAAGCACTAGGCCCAG 1 chr14:104060272-10406077 ( 29) AAAAAGAAAGCACTAGGCCCAG 1 chr20:24881866-24882366 ( 23) AAATAAAAAGCACCAGGCCCAG 1 chr17:40503412-40503912 ( 75) AAACAGAAAGCACCAGGACCAG 1 chr3:9518287-9518787 ( 43) AAAGAGAAAGCACCAGGCCCTG 1 chrX:12189080-12189580 ( 11) AAACATAAAGCACCAGGCCCAG 1 chr19:34822732-34823232 ( 5) AAACAGAAAGCACTAGGCCCTG 1 chr2:25861267-25861767 ( 17) AAACAGAAAGCCTCAGGCCCAG 1 chr11:75710193-75710693 ( 45) ACAAAAAAAGCACCAGGCACAG 1 chr1:243638999-243639499 ( 52) TCAAAGAAAACTCCAGGCCCAG 1 chr15:95851769-95852269 ( 4) AAAGAAAAAGCACCAGGCCCAA 1 chr17:2628448-2628948 ( 63) ACAAAAAAAGGTCCAGGACCAG 1 chr13:51712756-51713256 ( 40) ACAAAGAAAGCTCCAGGCCCAC 1 chr6:29543656-29544156 ( 66) CACAAAAAAGGCCCAGGCCCAG 1 chr12:92878738-92879238 ( 6) AAAAAGAAAGCTCCAAGCCCAG 1 chr8:27831648-27832148 ( 31) ACTAAGAAAACTCCAGGCCCAG 1 chr9:134312146-134312646 ( 43) CAGAAGAAAACTCCAGGCCCAG 1 chr19:7817249-7817749 ( 38) AGAAGAAAGGCACCAGGCCCAG 1 chr2:65626187-65626687 ( 21) TCCAAAAAGGCACCTGGCCCAG 1 chr21:37611143-37611643 ( 20) AACCAGAAAGCACTTGGCCCAG 1 chr3:126359250-126359750 ( 41) TCCAAAAAGGCACCAGGCCCAA 1 chr12:108683540-10868404 ( 34) TACCAAAAAACACTAGGCCCAG 1 chr15:101682553-10168305 ( 4) ACACAGAAAACTCCAGGCCAAG 1 chr22:23944162-23944662 ( 7) ACAAAGAAAAGCCCAGGACCAG 1 chr22:50211977-50212477 ( 79) ACAAAGAAAAGCCCAGGACCAG 1 chr16:47217265-47217765 ( 40) ACAAAAAAGGCTCTGGGACCAG 1 chr16:203025-203525 ( 20) AAACAGAAAGCATCAGGTCCAG 1 chr7:135871663-135872163 ( 60) AAAAAAAAGACCCCAGGCCCAT 1 chr10:11420063-11420563 ( 41) ATATAAAAGGCACAAGGCCCAG 1 chr7:131358430-131358930 ( 23) AAAAGAAAATCTCCAGGCCCAG 1 chr10:72438673-72439173 ( 46) ACCAAAAAAAGTCCAGGACCAG 1 chr19:45260889-45261389 ( 15) ACGCAAAAGACACCGGGCCCCG 1 chr7:75858110-75858610 ( 76) ACAAATAAAGGTCCAGGACCAG 1 chr16:88495567-88496067 ( 52) CAGGAAAAAGCTCTAGGCCCCG 1 chr21:44393387-44393887 ( 64) AAAAAAAAGGCACTGGGTCCAG 1 chr3:52508773-52509273 ( 52) CCCTAAAAGGCACCTGGCCCTG 1 chr1:90055231-90055731 ( 31) CCTCAAAAAGCCCCAGGCCTAG 1 chr15:96240919-96241419 ( 66) TTAAAAAAGGCACCAGACCCAG 1 chr17:64771859-64772359 ( 13) CTGAAAAAGGCACCAGGTCCAG 1 chr3:43059376-43059876 ( 10) TAGCAAAAGGCACAGGGCCCAG 1 chr20:58934679-58935179 ( 29) CCAAAGAAAAGCCCAGGACCTG 1 chr15:68760957-68761457 ( 37) AGAAAGAAATCTTCAGGCCCAG 1 chr1:62626544-62627044 ( 26) ACAAAGAAAAGACCAGGCCATG 1 chr5:175831876-175832376 ( 28) ACCAAAAAGGTTCCTGGCCCTG 1 chr3:136065928-136066428 ( 28) CACAAAAAAGCACAAAGCCCAG 1 chr5:77799798-77800298 ( 17) AAACAGAAAGCACAAGGCTCTG 1 chr6:85587672-85588172 ( 5) CAATAAAAGGCCCCTGGCCCAA 1 chr12:40200633-40201133 ( 44) TCAAAGAAAAGCCCAGGACCTG 1 chr1:182465455-182465955 ( 26) ACAAAGAAAAGTCCTGGACCTG 1 chr10:92851996-92852496 ( 46) CAAAAGGAAACTCTAGGCCCAG 1 chr2:27424441-27424941 ( 25) TAAAAAAAGGCACCTGGCCACG 1 chr6:28643344-28643844 ( 60) CCAGAAAAGGCTCCAGGGCCTG 1 chr10:22952316-22952816 ( 29) ACAAACAAAACTCCAGGTCCAG 1 chr16:3843494-3843994 ( 58) GAAAAAAAGGCTTCAGGCCCAC 1 chr2:8983204-8983704 ( 14) AAAAAAACATCTCTAGGCCCAG 1 chr9:127829519-127830019 ( 50) AGCAAAATGGCACCTGGCCCCG 1 chr5:180146654-180147154 ( 78) CAACAAAAAAGTCCTGGACCTG 1 chr7:144162898-144163398 ( 35) GAACAAAAAGTACAAGGCCCTG 1 chr11:275366-275866 ( 56) AACCAAAAAGCATTAGACCCAG 1 chr19:28696653-28697153 ( 9) AAAGATAAATCTCCTGGCCCAG 1 chr1:85014547-85015047 ( 67) TCCAAAACAGCACTGGGCCCAG 1 chr21:43309827-43310327 ( 39) CTACAAATGGCTCCAGGCCCGG 1 chr15:73310262-73310762 ( 21) ACAAAGAAAGGCCCAAGCCCCA 1 chr11:113914633-11391513 ( 37) ACAAAGAAAGCTCCAGACCCCT 1 chr5:6063270-6063770 ( 36) AAAACAAAAGCATCAGGCACTG 1 chr2:109505730-109506230 ( 54) TGTAAAACGGCACCAGGCCCTG 1 chr4:184011189-184011689 ( 73) GTGCATAAAGCCCCAGGCCCCG 1 chr1:110232853-110233353 ( 68) ACCCAGATGGCTCTGGGCCCCG 1 chr1:38591928-38592428 ( 39) TTCCAAAAGGCACCAGGCCAAA 1 chr6:136457132-136457632 ( 9) CCCCAAAAAAGCTCAGGACCAG 1 chr5:178218517-178219017 ( 37) TCCCACAAAACACAAGGCCCAG 1 chr1:22440872-22441372 ( 28) ACAAAGAAAAGCCCTGGACCAA 1 chr12:113501885-11350238 ( 51) ATAAAAAAAGAACCACGCCCAG 1 chr1:9801161-9801661 ( 64) AAACGAAAAGTACCAGACCCAG 1 chr9:89857773-89858273 ( 9) ACAAAGAAAAGCCTAGGACCTA 1 chr7:129031346-129031846 ( 19) ATGAAGAAAAGCCCAGGACCAA 1 chr9:129741133-129741633 ( 41) CCTGAGAAAGATCTAGGCCCTG 1 chr7:75998991-75999491 ( 8) AAACAGAAAGCACCCAGCCTAG 1 chr3:193246764-193247264 ( 15) CCAAAGGAAAGCCCAGGACCTG 1 chr19:4657989-4658489 ( 22) TGTGAAAAGGCCCCAGGCACTG 1 chr6:4657943-4658443 ( 11) ACACAAAAAGTACCAAGCCCCC 1 chr19:18250279-18250779 ( 55) TTTTAAAAGGCTCTGGGCCCTG 1 chr13:48330458-48330958 ( 18) TAGAGAAAAGCCTCAGGACCTG 1 chr6:129945973-129946473 ( 50) CTCAGAAAGGCACCAGTCCCAG 1 chr10:121150989-12115148 ( 30) CTAACAAAAAGCTCAGGCCCTG 1 chr10:98148725-98149225 ( 63) TTAAAGAAAAGCTCAGGACCTG 1 chr22:39634112-39634612 ( 39) ATGGAAATGGCTCTGGGCCCTG 1 chr17:64325603-64326103 ( 58) TCAGATAAGGGTCCAGGCACTG 1 chr9:128134047-128134547 ( 56) AGAAAGAAAAGCCTAGGACCTA 1 chr1:174212817-174213317 ( 40) AGCAAAAAAAGCCTGGGACCTG 1 chr11:68486503-68487003 ( 20) AAATAGAAAGCACTAGGCGCAC 1 chr17:12700636-12701136 ( 44) ATACAAAAATATTCAGGCCCCG 1 chr8:144834879-144835379 ( 64) TCCCCAAAAGCTCAAGGTCCCG 1 chr20:25385449-25385949 ( 63) AATAGAAAGGCACCAGGCTTAG 1 chr21:37147269-37147769 ( 52) CAACAAATGGCATCTGGCACTG 1 chr10:86759526-86760026 ( 65) CAGAAAAAAGATCTAGGCCTAA 1 chr11:62832615-62833115 ( 73) TCACAAAAGGCTCAGGGTCATG 1 chr20:32912455-32912955 ( 77) GAGAAAATGGCTCTGGGCCCTA 1 chr1:210334718-210335218 ( 39) ATAGCAAAATTTTCAGGCCCAG 1 chr7:5350639-5351139 ( 63) GTGTCAAAGGCTCTGGGCCCTG 1 chr19:6746763-6747263 ( 16) CCCCAATAATCCCAAGGCCCCG 1 chr16:27525014-27525514 ( 40) AGAAAAAAGGCTCACGGAACTG 1 chr19:10604677-10605177 ( 39) GGGGAAATGGCTCTGGGCCCCG 1 chr1:214045158-214045658 ( 41) TCCCCAAAGGCACCTGGCCTTC 1 chr12:2810208-2810708 ( 49) CATTAAAAGGCACTGGGTCCCA 1 chr15:100936761-10093726 ( 56) CATTAAAAAGCACCAGGCCTGT 1 chr16:22258560-22259060 ( 34) ATCGAAAAGGTTCATGGCCCCA 1 chr3:129036876-129037376 ( 20) CCTGCAGAGGCTCCGGGACCTG 1 chr10:92602130-92602630 ( 54) ACAAAGAAAAGCCCTAGATCTG 1 chr5:54623104-54623604 ( 47) CGTGAAAAGGCTCCTGGCTCTT 1 chr14:92033351-92033851 ( 51) AGAAATAAGGCCTAAAGCCCCA 1 chr14:100286859-10028735 ( 75) CTCACTAAAGGCCCAGGCCAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMAMARAARGCWCCAGGCCCWG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47163 bayes= 10.5425 E= 3.1e-378 105 -6 -218 -84 62 59 -118 -99 110 -24 -86 -170 79 59 -96 -199 165 -176 -218 -1362 101 -376 73 -235 177 -1362 -318 -516 170 -318 -1362 -235 121 -1362 66 -1362 -30 -1362 173 -235 -316 176 -18 -258 70 -6 -1362 23 -1362 204 -1362 -135 -158 171 -1362 -52 138 -376 -86 -116 -235 -476 212 -1362 -316 -1362 215 -516 -64 180 -476 -235 -258 208 -476 -316 -258 207 -1362 -258 101 -76 -376 1 -135 -244 191 -284 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMAMARAARGCWCCAGGCCCWG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 126 E= 3.1e-378 0.587302 0.206349 0.047619 0.158730 0.436508 0.325397 0.095238 0.142857 0.611111 0.182540 0.119048 0.087302 0.492063 0.325397 0.111111 0.071429 0.888889 0.063492 0.047619 0.000000 0.571429 0.015873 0.357143 0.055556 0.968254 0.000000 0.023810 0.007937 0.920635 0.023810 0.000000 0.055556 0.658730 0.000000 0.341270 0.000000 0.230159 0.000000 0.714286 0.055556 0.031746 0.730159 0.190476 0.047619 0.460317 0.206349 0.000000 0.333333 0.000000 0.888889 0.000000 0.111111 0.095238 0.706349 0.000000 0.198413 0.738095 0.015873 0.119048 0.126984 0.055556 0.007937 0.936508 0.000000 0.031746 0.000000 0.960317 0.007937 0.182540 0.753968 0.007937 0.055556 0.047619 0.912698 0.007937 0.031746 0.047619 0.904762 0.000000 0.047619 0.571429 0.126984 0.015873 0.285714 0.111111 0.039683 0.809524 0.039683 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMAMARAARGCWCCAGGCCCWG MEME-1 regular expression -------------------------------------------------------------------------------- [AC][AC]A[AC]A[AG]AA[AG][GA]C[ATC]CCAGGCCC[AT]G -------------------------------------------------------------------------------- Time 376.76 secs. ******************************************************************************** ******************************************************************************** MOTIF ATGGTTTYACTGGTGAATTCTA MEME-2 width = 22 sites = 105 llr = 1913 E-value = 5.1e-415 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATGGTTTYACTGGTGAATTCTA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 9:2:1:::a:31:1198::117 pos.-specific C :1::21:4:8:::::::1:711 probability G 1:8a2:::::19919:11:::1 matrix T :9::5996:26::8::189281 bits 2.2 2.0 * 1.8 * ** 1.5 * ** ** * Relative 1.3 **** ** ** ** ** * Entropy 1.1 **** ** ** ** ** * (26.3 bits) 0.9 **** ***** ***** **** 0.7 **** ***************** 0.4 **** ***************** 0.2 ********************** 0.0 ---------------------- Multilevel ATGGTTTTACTGGTGAATTCTA consensus C C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGTTTYACTGGTGAATTCTA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr9:128134047-128134547 - 34 1.38e-13 CTAGGACCTA ATGGTTTTACTGGTGAATTCTA CCAAATATTT chr10:22952316-22952816 + 51 1.38e-13 ccaggtccag atggttttactggtgaattcta ccaaaccttt chr10:2514907-2515407 + 56 1.38e-13 ccaggcccag atggttttactggtgaattcta ccaaagattt chr9:89857773-89858273 + 31 1.38e-13 ctaggaccta atggttttactggtgaattcta ccaaatattt chr7:131358430-131358930 - 1 2.44e-13 CCAGGCCCAG ATGGTTTCACTGGTGAATTCTA chr1:243638999-243639499 + 74 2.44e-13 ccaggcccag atggtttcactggtgaattcta cagac chr9:134312146-134312646 - 21 2.44e-13 CCAGGCCCAG ATGGTTTCACTGGTGAATTCTA TCAACATTCG chr7:129031346-129031846 + 41 3.49e-13 ccaggaccaa atggctttactggtgaattcta caaaacatgt chr1:33106095-33106595 + 15 3.49e-13 ccaggacctt atggctttactggtgaattcta ccaaacatgt chr10:98148725-98149225 - 41 4.29e-13 TCAGGACCTG ATGGCTTCACTGGTGAATTCTA CCAGACATTC chr13:48330458-48330958 + 40 4.29e-13 tcaggacctg atggcttcactggtgaattcta ccagacattt chr7:144162898-144163398 - 13 4.29e-13 CAAGGCCCTG ATGGCTTCACTGGTGAATTCTA AACATTTAGG chr16:203025-203525 + 42 7.78e-13 tcaggtccag atgggtttactggtgaattcta ccaaagcatt chr16:50177101-50177601 - 30 8.58e-13 CCAGGCCCAG ATGGGTTCACTGGTGAATTCTA CCAAACTGTT chr4:1120371-1120871 + 58 8.58e-13 ccaggcccag atgggttcactggtgaattcta acaaacattt chrX:12189080-12189580 + 33 8.58e-13 ccaggcccag atgggttcactggtgaattcta ccaaacattt chr21:37611143-37611643 + 42 8.58e-13 cttggcccag atgggttcactggtgaattcta ccaaagactt chr20:58934679-58935179 + 51 1.15e-12 ccaggacctg atggcttcacaggtgaattcta ccaaacattt chr5:180146654-180147154 - 56 2.77e-12 CCTGGACCTG GTGGTTTCACTGGTGAATTCTA CCAAACATTT chr22:23944162-23944662 + 29 3.34e-12 ccaggaccag atggttttactggtgaattcaa ccaaaagctt chr14:104060272-10406077 - 7 4.14e-12 CTAGGCCCAG ATGGTTTCACTGGTGAATTCAA CCAAAC chr1:85014547-85015047 - 45 5.21e-12 CTGGGCCCAG ATGGTTTTACGGGTGAATTCTA CTAAACATTT chr1:42602446-42602946 + 37 5.21e-12 ccaggcccag atggtttcactggtgatttcta ccaaacattt chr16:50514038-50514538 - 60 5.21e-12 CTAGGACCTG ATGGCTTTACTGGTGAATTCCA CTGAATATTT chr6:136457132-136457632 + 31 5.87e-12 tcaggaccag atggcttcactggtgaattcca ccaaacattt chr10:121150989-12115148 - 8 6.36e-12 TCAGGCCCTG GTGGCTTCACTGGTGAATTCTA CAACATT chr14:104273365-10427386 - 57 7.60e-12 CTAGGCCCAG ATGGTTTCACTGGTGAACTCTA CCAACTATGT chr2:8983204-8983704 + 36 7.60e-12 ctaggcccag atggttttactggagaattcta tcaaatgttt chr15:68760957-68761457 + 59 7.60e-12 tcaggcccag atggttttactggagaattcta ccaaatattt chr22:50211977-50212477 - 57 1.13e-11 CCAGGACCAG ATGGCTTCACTGGTGATTTCTA CCAAATACTC chr11:275366-275866 - 34 1.30e-11 TTAGACCCAG ATGGTTTTACTGGTGAATTATA TTGAAAACAT chr5:77799798-77800298 + 39 1.62e-11 caaggctctg atgggtttattggtgaattcta tcaaacattt chr18:11358790-11359290 + 12 1.62e-11 caaggcccct atggtttcacaggtgatttcta ccaaatattt chr12:92878738-92879238 + 28 1.81e-11 ccaagcccag atggttttactagtgaattcta gcaaacattc chr3:9518287-9518787 - 21 2.02e-11 CCAGGCCCTG ATGGGTTCACTGGTGAATTCTG CCAAACATTA chr8:28613369-28613869 - 15 2.02e-11 CCAGGCCCAG ATGGTTTCACTAGTGAATTCTA AGAAATGGTT chr6:27004086-27004586 - 59 2.66e-11 CCAGGCCCAG ACGGATTCACTGGTGAATTCTA CCAAACATTT chr5:6063270-6063770 + 58 4.28e-11 tcaggcactg ataggttcacaggtgaattcta ccaaaggctt chr11:113914633-11391513 - 15 8.48e-11 CCAGACCCCT ATAGTTTTACTGGTAAATTCTA TCAGACAGTA chr10:72438673-72439173 + 68 8.48e-11 ccaggaccag acggattcacaggtgaattcta ccagaggtac chr3:113857824-113858324 - 62 8.48e-11 CCAGGCCCAG ATAGTTTTACTGGAGAATTCTA CAAAACATTA chr10:92851996-92852496 + 68 1.10e-10 ctaggcccag atagttttactggtggattcta catctttaag chr7:75998991-75999491 + 30 1.26e-10 cccagcctag atgggtttattggtgaattcca cacatataat chr15:76750110-76750610 + 20 1.43e-10 cctggacctg atggctttatgggtgaattcta tcaaacactt chr19:49320687-49321187 + 18 1.61e-10 tctggacctg atggcttcatgggtgaattcta ctaaaccttt chr10:92602130-92602630 - 32 1.61e-10 CCTAGATCTG ATAGTTTCATAGGTGAATTCTA TAAAACATTT chr1:236372410-236372910 - 47 2.00e-10 CCAGGCCCAG ATGGATTTACTGGTGAGTTTTA CCAAACATTT chr15:95851769-95852269 + 26 2.53e-10 ccaggcccaa atggttttactggcaaattcta tataatattc chr1:15267313-15267813 - 40 2.85e-10 CCAGGCCCAG ATGGGTTCCCTGGTGAATTCTA TCAGACATTT chr6:113071669-113072169 + 7 2.85e-10 gcatca gcggttttactggtgaattctg ttaaaggttt chr1:182465455-182465955 + 48 3.20e-10 cctggacctg atggttttactggtgacttata ccccaaacat chr19:34822732-34823232 + 27 4.04e-10 ctaggccctg gtgcttttactggtgaattcta aatatttgag chr6:129945973-129946473 - 28 5.69e-10 CCAGTCCCAG ATGGTTTTACAGGTGAGTTTTC CAACATGTGG chr16:72127473-72127973 + 46 6.40e-10 TTAGGTCTAG ATGGTTTTATAGGTGAATTTCA tgaagtcatc chr13:51712756-51713256 + 62 6.40e-10 ccaggcccac atgcctttactggtgaatttta tgaaaaattc chr1:62626544-62627044 + 48 6.40e-10 ccaggccatg acaggttcactggtgaattctt ccaaactttc chr17:40503412-40503912 - 53 9.00e-10 CCAGGACCAG ACAGTTTTACTGGTGAAATCTA CCAAACATTT chr1:174212817-174213317 + 62 1.00e-09 ctgggacctg atggcttcactggtgaactttc ccaaacattt chr12:40200633-40201133 + 66 1.25e-09 ccaggacctg atggctgtactggtgaattccc ccaaacatgt chr1:22440872-22441372 - 6 1.39e-09 CCTGGACCAA ATGGCTTTACAGGTGAATTTAC CAAAC chr19:6746763-6747263 + 38 1.70e-09 caaggccccg acggttttacaggtgattccta ccacacttag chr8:27831648-27832148 + 53 1.70e-09 ccaggcccag atagctttactagtgaattcca ccaatttaag chr7:44302021-44302521 + 71 1.70e-09 ccaggcccag attggttcattggtgaattcta ccaaacat chr1:47861402-47861902 + 55 1.89e-09 ccaggccctg atggattcactagtgaattctg ccaaacattt chr1:90055231-90055731 + 53 2.09e-09 ccaggcctag gtggttttataggtgacttcta ttcagttttt chr20:58916634-58917134 + 11 2.83e-09 ccaggcccag gtggtttcacaggggaattata ttaaaccttt chr11:75710193-75710693 - 23 3.82e-09 CCAGGCACAG ACAGTTTCACAGGTGAAGTTTA GCAAATCTGG chrX:1479766-1480266 + 60 4.21e-09 ccaggcccag atgggtttactgatgaattttc cccaacattt chr2:25861267-25861767 + 39 4.21e-09 tcaggcccag atgggtttactagtgaactcca caaaatactt chr5:178218517-178219017 + 59 5.66e-09 caaggcccag atggctttataggtgagttttt accttcaaag chr6:34965451-34965951 + 55 6.86e-09 CTGGGCTCAG ATGGCTTTACTGGTGATTCTTT ATAATTTTAG chr9:38097747-38098247 - 61 7.54e-09 CCAGGTCCAT ACAGTTTTACAGGTGAATTATT TTAAGCCTCA chr2:71540993-71541493 - 34 7.54e-09 CCCAGCCCAT ATGGTTTTATGGGTGAATTATT TCAAACCCTC chr3:136065928-136066428 + 50 7.54e-09 caaagcccag gtagttttacaggggaattctg ccaaaccttc chr7:93721144-93721644 - 15 7.54e-09 CCAGGCCCAG GTGGTTTCACTGGTAGATTCTT CCAGACATTA chr19:28696653-28697153 + 31 1.20e-08 cctggcccag acggtttcattggagaaatcta ttaaacattt chr12:108683540-10868404 + 56 1.31e-08 ctaggcccag atggttttacaggtgagtgtca ccaaatattc chr16:22258560-22259060 + 56 1.43e-08 CATggcccca gtggttttataggtgagtttca ttgagtgaac chr1:241630829-241631329 - 47 1.57e-08 TTTGACCCTA ATGGACTTACTGGTGAACTTTT TCAAATGTTT chr6:29543656-29544156 - 44 1.87e-08 CCAGGCCCAG ATGTCTCTACTGGTGAATTCTA CCAAACATTT chr6:4657943-4658443 + 33 2.44e-08 ccaagccccc atgggtttacaggtgaggtgaa attttcaagg chr11:10045599-10046099 + 53 2.44e-08 ccaggcccag atggattgactggtggattctt ttaaacattt chr1:214045158-214045658 + 63 2.66e-08 CCTGGCCTTC AGAGTTTTATGGGTGAATTCTA TCAACTATTC chr6:20687020-20687520 - 53 2.90e-08 CCAGGCCCAG ATTGGTTCACTGGTGAATGTTA CCATATTTTT chr12:113501885-11350238 + 73 3.44e-08 ccacgcccag acagtcttacaggtgagttgta taaatg chr7:75858110-75858610 - 54 4.07e-08 CCAGGACCAG ATGGTTTTATTGGTGAACTGAT TTTGACAACA chr19:45260889-45261389 + 37 4.43e-08 ccgggccccg atggtcttacaggcaaatccta ccagatgttc chr17:2628448-2628948 - 41 6.67e-08 CCAGGACCAG ACGGATTCACAGCAGAATTCTA TCAGACATTC chr17:12700636-12701136 - 22 1.07e-07 TCAGGCCCCG GCAGTCTTACTGGTGAATTTCT ATCCAGATGT chrX:53639232-53639732 + 52 1.84e-07 aaagaaCCCT ATAGTTATACAGGTGACTTTAA AGTGATTTTT chr1:210334718-210335218 + 61 2.14e-07 tcaggcccag atggctttactagtgaaacttc caaacattta chr9:126771383-126771883 + 41 2.30e-07 cccaggccag atggttttacagatgaagtaac aaacatttga chr7:135871663-135872163 - 38 2.48e-07 CCAGGCCCAT ATGGTTTTACAGGCAAGTTTAC CTACCTTGAG chr8:144834879-144835379 - 42 4.41e-07 CAAGGTCCCG ATGGTTTTACAGATTAGCTCCA CCAAGTTCTA chr2:65626187-65626687 + 43 4.41e-07 cctggcccag acagttttacagtaaaattcta gcaatctcaa chr14:100286859-10028735 + 43 5.83e-07 CCAGGTCAGT GTGGCCTCACGGGTGCTTTTTA TAAGAAATGA chr3:126359250-126359750 - 19 1.07e-06 CCAGGCCCAA ATGGTTTTATAGGCAAGGTCAT ACAATATTTA chr15:96240919-96241419 - 44 1.07e-06 CCAGACCCAG ATGGTTTTACAGATGACATTAT AGTCTTTTAA chr10:86759526-86760026 - 43 1.91e-06 CTAGGCCTAA ATGGTCACATAGGGGAGGTCTT CCAAACTTTC chr9:129741133-129741633 - 19 2.94e-06 CTAGGCCCTG CTGGGTTTACAGGAGTTTTGTA CACTCAGATT chr21:44393387-44393887 - 42 4.21e-06 CTGGGTCCAG ATGGACTCACAGGGGAGTCGAC CAAGCTTATA chr10:95732866-95733366 - 54 5.21e-05 GGTCTCTAAA CTGGCCGCTCTGGGAATGTCTG TCTTTTATGG chr10:86952669-86953169 - 26 6.86e-05 AGGTCTATAA ACGGCCGCTCTGGGAGTGTCTG TCCTATGCGG chr12:56882341-56882841 - 64 7.18e-05 AGGTCTATAA ATGGCCGCTCTGGGAGTGTCCG TCTTATGCAG chr9:137945508-137946008 - 53 6.13e-04 CAAGCATGTC GTAGATGATCTGGGTAAGTCGT GAAAAAGATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGTTTYACTGGTGAATTCTA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:128134047-128134547 1.4e-13 33_[-2]_45 chr10:22952316-22952816 1.4e-13 50_[+2]_28 chr10:2514907-2515407 1.4e-13 55_[+2]_23 chr9:89857773-89858273 1.4e-13 30_[+2]_48 chr7:131358430-131358930 2.4e-13 [-2]_78 chr1:243638999-243639499 2.4e-13 73_[+2]_5 chr9:134312146-134312646 2.4e-13 20_[-2]_58 chr7:129031346-129031846 3.5e-13 40_[+2]_38 chr1:33106095-33106595 3.5e-13 14_[+2]_64 chr10:98148725-98149225 4.3e-13 40_[-2]_38 chr13:48330458-48330958 4.3e-13 39_[+2]_39 chr7:144162898-144163398 4.3e-13 12_[-2]_66 chr16:203025-203525 7.8e-13 41_[+2]_37 chr16:50177101-50177601 8.6e-13 29_[-2]_49 chr4:1120371-1120871 8.6e-13 57_[+2]_21 chrX:12189080-12189580 8.6e-13 32_[+2]_46 chr21:37611143-37611643 8.6e-13 41_[+2]_37 chr20:58934679-58935179 1.1e-12 50_[+2]_28 chr5:180146654-180147154 2.8e-12 55_[-2]_23 chr22:23944162-23944662 3.3e-12 28_[+2]_50 chr14:104060272-10406077 4.1e-12 6_[-2]_72 chr1:85014547-85015047 5.2e-12 44_[-2]_34 chr1:42602446-42602946 5.2e-12 36_[+2]_42 chr16:50514038-50514538 5.2e-12 59_[-2]_19 chr6:136457132-136457632 5.9e-12 30_[+2]_48 chr10:121150989-12115148 6.4e-12 7_[-2]_71 chr14:104273365-10427386 7.6e-12 56_[-2]_22 chr2:8983204-8983704 7.6e-12 35_[+2]_43 chr15:68760957-68761457 7.6e-12 58_[+2]_20 chr22:50211977-50212477 1.1e-11 56_[-2]_22 chr11:275366-275866 1.3e-11 33_[-2]_45 chr5:77799798-77800298 1.6e-11 38_[+2]_40 chr18:11358790-11359290 1.6e-11 11_[+2]_67 chr12:92878738-92879238 1.8e-11 27_[+2]_51 chr3:9518287-9518787 2e-11 20_[-2]_58 chr8:28613369-28613869 2e-11 14_[-2]_64 chr6:27004086-27004586 2.7e-11 58_[-2]_20 chr5:6063270-6063770 4.3e-11 57_[+2]_21 chr11:113914633-11391513 8.5e-11 14_[-2]_64 chr10:72438673-72439173 8.5e-11 67_[+2]_11 chr3:113857824-113858324 8.5e-11 61_[-2]_17 chr10:92851996-92852496 1.1e-10 67_[+2]_11 chr7:75998991-75999491 1.3e-10 29_[+2]_49 chr15:76750110-76750610 1.4e-10 19_[+2]_59 chr19:49320687-49321187 1.6e-10 17_[+2]_61 chr10:92602130-92602630 1.6e-10 31_[-2]_47 chr1:236372410-236372910 2e-10 46_[-2]_32 chr15:95851769-95852269 2.5e-10 25_[+2]_53 chr1:15267313-15267813 2.9e-10 39_[-2]_39 chr6:113071669-113072169 2.9e-10 6_[+2]_72 chr1:182465455-182465955 3.2e-10 47_[+2]_31 chr19:34822732-34823232 4e-10 26_[+2]_52 chr6:129945973-129946473 5.7e-10 27_[-2]_51 chr16:72127473-72127973 6.4e-10 45_[+2]_33 chr13:51712756-51713256 6.4e-10 61_[+2]_17 chr1:62626544-62627044 6.4e-10 47_[+2]_31 chr17:40503412-40503912 9e-10 52_[-2]_26 chr1:174212817-174213317 1e-09 61_[+2]_17 chr12:40200633-40201133 1.2e-09 65_[+2]_13 chr1:22440872-22441372 1.4e-09 5_[-2]_73 chr19:6746763-6747263 1.7e-09 37_[+2]_41 chr8:27831648-27832148 1.7e-09 52_[+2]_26 chr7:44302021-44302521 1.7e-09 70_[+2]_8 chr1:47861402-47861902 1.9e-09 54_[+2]_24 chr1:90055231-90055731 2.1e-09 52_[+2]_26 chr20:58916634-58917134 2.8e-09 10_[+2]_68 chr11:75710193-75710693 3.8e-09 22_[-2]_56 chrX:1479766-1480266 4.2e-09 59_[+2]_19 chr2:25861267-25861767 4.2e-09 38_[+2]_40 chr5:178218517-178219017 5.7e-09 58_[+2]_20 chr6:34965451-34965951 6.9e-09 54_[+2]_24 chr9:38097747-38098247 7.5e-09 60_[-2]_18 chr2:71540993-71541493 7.5e-09 33_[-2]_45 chr3:136065928-136066428 7.5e-09 49_[+2]_29 chr7:93721144-93721644 7.5e-09 14_[-2]_64 chr19:28696653-28697153 1.2e-08 30_[+2]_48 chr12:108683540-10868404 1.3e-08 55_[+2]_23 chr16:22258560-22259060 1.4e-08 55_[+2]_23 chr1:241630829-241631329 1.6e-08 46_[-2]_32 chr6:29543656-29544156 1.9e-08 43_[-2]_35 chr6:4657943-4658443 2.4e-08 32_[+2]_46 chr11:10045599-10046099 2.4e-08 52_[+2]_26 chr1:214045158-214045658 2.7e-08 62_[+2]_16 chr6:20687020-20687520 2.9e-08 52_[-2]_26 chr12:113501885-11350238 3.4e-08 72_[+2]_6 chr7:75858110-75858610 4.1e-08 53_[-2]_25 chr19:45260889-45261389 4.4e-08 36_[+2]_42 chr17:2628448-2628948 6.7e-08 40_[-2]_38 chr17:12700636-12701136 1.1e-07 21_[-2]_57 chrX:53639232-53639732 1.8e-07 51_[+2]_27 chr1:210334718-210335218 2.1e-07 60_[+2]_18 chr9:126771383-126771883 2.3e-07 40_[+2]_38 chr7:135871663-135872163 2.5e-07 37_[-2]_41 chr8:144834879-144835379 4.4e-07 41_[-2]_37 chr2:65626187-65626687 4.4e-07 42_[+2]_36 chr14:100286859-10028735 5.8e-07 42_[+2]_36 chr3:126359250-126359750 1.1e-06 18_[-2]_60 chr15:96240919-96241419 1.1e-06 43_[-2]_35 chr10:86759526-86760026 1.9e-06 42_[-2]_36 chr9:129741133-129741633 2.9e-06 18_[-2]_60 chr21:44393387-44393887 4.2e-06 41_[-2]_37 chr10:95732866-95733366 5.2e-05 53_[-2]_25 chr10:86952669-86953169 6.9e-05 25_[-2]_53 chr12:56882341-56882841 7.2e-05 63_[-2]_15 chr9:137945508-137946008 0.00061 52_[-2]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGTTTYACTGGTGAATTCTA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATGGTTTYACTGGTGAATTCTA width=22 seqs=105 chr9:128134047-128134547 ( 34) ATGGTTTTACTGGTGAATTCTA 1 chr10:22952316-22952816 ( 51) ATGGTTTTACTGGTGAATTCTA 1 chr10:2514907-2515407 ( 56) ATGGTTTTACTGGTGAATTCTA 1 chr9:89857773-89858273 ( 31) ATGGTTTTACTGGTGAATTCTA 1 chr7:131358430-131358930 ( 1) ATGGTTTCACTGGTGAATTCTA 1 chr1:243638999-243639499 ( 74) ATGGTTTCACTGGTGAATTCTA 1 chr9:134312146-134312646 ( 21) ATGGTTTCACTGGTGAATTCTA 1 chr7:129031346-129031846 ( 41) ATGGCTTTACTGGTGAATTCTA 1 chr1:33106095-33106595 ( 15) ATGGCTTTACTGGTGAATTCTA 1 chr10:98148725-98149225 ( 41) ATGGCTTCACTGGTGAATTCTA 1 chr13:48330458-48330958 ( 40) ATGGCTTCACTGGTGAATTCTA 1 chr7:144162898-144163398 ( 13) ATGGCTTCACTGGTGAATTCTA 1 chr16:203025-203525 ( 42) ATGGGTTTACTGGTGAATTCTA 1 chr16:50177101-50177601 ( 30) ATGGGTTCACTGGTGAATTCTA 1 chr4:1120371-1120871 ( 58) ATGGGTTCACTGGTGAATTCTA 1 chrX:12189080-12189580 ( 33) ATGGGTTCACTGGTGAATTCTA 1 chr21:37611143-37611643 ( 42) ATGGGTTCACTGGTGAATTCTA 1 chr20:58934679-58935179 ( 51) ATGGCTTCACAGGTGAATTCTA 1 chr5:180146654-180147154 ( 56) GTGGTTTCACTGGTGAATTCTA 1 chr22:23944162-23944662 ( 29) ATGGTTTTACTGGTGAATTCAA 1 chr14:104060272-10406077 ( 7) ATGGTTTCACTGGTGAATTCAA 1 chr1:85014547-85015047 ( 45) ATGGTTTTACGGGTGAATTCTA 1 chr1:42602446-42602946 ( 37) ATGGTTTCACTGGTGATTTCTA 1 chr16:50514038-50514538 ( 60) ATGGCTTTACTGGTGAATTCCA 1 chr6:136457132-136457632 ( 31) ATGGCTTCACTGGTGAATTCCA 1 chr10:121150989-12115148 ( 8) GTGGCTTCACTGGTGAATTCTA 1 chr14:104273365-10427386 ( 57) ATGGTTTCACTGGTGAACTCTA 1 chr2:8983204-8983704 ( 36) ATGGTTTTACTGGAGAATTCTA 1 chr15:68760957-68761457 ( 59) ATGGTTTTACTGGAGAATTCTA 1 chr22:50211977-50212477 ( 57) ATGGCTTCACTGGTGATTTCTA 1 chr11:275366-275866 ( 34) ATGGTTTTACTGGTGAATTATA 1 chr5:77799798-77800298 ( 39) ATGGGTTTATTGGTGAATTCTA 1 chr18:11358790-11359290 ( 12) ATGGTTTCACAGGTGATTTCTA 1 chr12:92878738-92879238 ( 28) ATGGTTTTACTAGTGAATTCTA 1 chr3:9518287-9518787 ( 21) ATGGGTTCACTGGTGAATTCTG 1 chr8:28613369-28613869 ( 15) ATGGTTTCACTAGTGAATTCTA 1 chr6:27004086-27004586 ( 59) ACGGATTCACTGGTGAATTCTA 1 chr5:6063270-6063770 ( 58) ATAGGTTCACAGGTGAATTCTA 1 chr11:113914633-11391513 ( 15) ATAGTTTTACTGGTAAATTCTA 1 chr10:72438673-72439173 ( 68) ACGGATTCACAGGTGAATTCTA 1 chr3:113857824-113858324 ( 62) ATAGTTTTACTGGAGAATTCTA 1 chr10:92851996-92852496 ( 68) ATAGTTTTACTGGTGGATTCTA 1 chr7:75998991-75999491 ( 30) ATGGGTTTATTGGTGAATTCCA 1 chr15:76750110-76750610 ( 20) ATGGCTTTATGGGTGAATTCTA 1 chr19:49320687-49321187 ( 18) ATGGCTTCATGGGTGAATTCTA 1 chr10:92602130-92602630 ( 32) ATAGTTTCATAGGTGAATTCTA 1 chr1:236372410-236372910 ( 47) ATGGATTTACTGGTGAGTTTTA 1 chr15:95851769-95852269 ( 26) ATGGTTTTACTGGCAAATTCTA 1 chr1:15267313-15267813 ( 40) ATGGGTTCCCTGGTGAATTCTA 1 chr6:113071669-113072169 ( 7) GCGGTTTTACTGGTGAATTCTG 1 chr1:182465455-182465955 ( 48) ATGGTTTTACTGGTGACTTATA 1 chr19:34822732-34823232 ( 27) GTGCTTTTACTGGTGAATTCTA 1 chr6:129945973-129946473 ( 28) ATGGTTTTACAGGTGAGTTTTC 1 chr16:72127473-72127973 ( 46) ATGGTTTTATAGGTGAATTTCA 1 chr13:51712756-51713256 ( 62) ATGCCTTTACTGGTGAATTTTA 1 chr1:62626544-62627044 ( 48) ACAGGTTCACTGGTGAATTCTT 1 chr17:40503412-40503912 ( 53) ACAGTTTTACTGGTGAAATCTA 1 chr1:174212817-174213317 ( 62) ATGGCTTCACTGGTGAACTTTC 1 chr12:40200633-40201133 ( 66) ATGGCTGTACTGGTGAATTCCC 1 chr1:22440872-22441372 ( 6) ATGGCTTTACAGGTGAATTTAC 1 chr19:6746763-6747263 ( 38) ACGGTTTTACAGGTGATTCCTA 1 chr8:27831648-27832148 ( 53) ATAGCTTTACTAGTGAATTCCA 1 chr7:44302021-44302521 ( 71) ATTGGTTCATTGGTGAATTCTA 1 chr1:47861402-47861902 ( 55) ATGGATTCACTAGTGAATTCTG 1 chr1:90055231-90055731 ( 53) GTGGTTTTATAGGTGACTTCTA 1 chr20:58916634-58917134 ( 11) GTGGTTTCACAGGGGAATTATA 1 chr11:75710193-75710693 ( 23) ACAGTTTCACAGGTGAAGTTTA 1 chrX:1479766-1480266 ( 60) ATGGGTTTACTGATGAATTTTC 1 chr2:25861267-25861767 ( 39) ATGGGTTTACTAGTGAACTCCA 1 chr5:178218517-178219017 ( 59) ATGGCTTTATAGGTGAGTTTTT 1 chr6:34965451-34965951 ( 55) ATGGCTTTACTGGTGATTCTTT 1 chr9:38097747-38098247 ( 61) ACAGTTTTACAGGTGAATTATT 1 chr2:71540993-71541493 ( 34) ATGGTTTTATGGGTGAATTATT 1 chr3:136065928-136066428 ( 50) GTAGTTTTACAGGGGAATTCTG 1 chr7:93721144-93721644 ( 15) GTGGTTTCACTGGTAGATTCTT 1 chr19:28696653-28697153 ( 31) ACGGTTTCATTGGAGAAATCTA 1 chr12:108683540-10868404 ( 56) ATGGTTTTACAGGTGAGTGTCA 1 chr16:22258560-22259060 ( 56) GTGGTTTTATAGGTGAGTTTCA 1 chr1:241630829-241631329 ( 47) ATGGACTTACTGGTGAACTTTT 1 chr6:29543656-29544156 ( 44) ATGTCTCTACTGGTGAATTCTA 1 chr6:4657943-4658443 ( 33) ATGGGTTTACAGGTGAGGTGAA 1 chr11:10045599-10046099 ( 53) ATGGATTGACTGGTGGATTCTT 1 chr1:214045158-214045658 ( 63) AGAGTTTTATGGGTGAATTCTA 1 chr6:20687020-20687520 ( 53) ATTGGTTCACTGGTGAATGTTA 1 chr12:113501885-11350238 ( 73) ACAGTCTTACAGGTGAGTTGTA 1 chr7:75858110-75858610 ( 54) ATGGTTTTATTGGTGAACTGAT 1 chr19:45260889-45261389 ( 37) ATGGTCTTACAGGCAAATCCTA 1 chr17:2628448-2628948 ( 41) ACGGATTCACAGCAGAATTCTA 1 chr17:12700636-12701136 ( 22) GCAGTCTTACTGGTGAATTTCT 1 chrX:53639232-53639732 ( 52) ATAGTTATACAGGTGACTTTAA 1 chr1:210334718-210335218 ( 61) ATGGCTTTACTAGTGAAACTTC 1 chr9:126771383-126771883 ( 41) ATGGTTTTACAGATGAAGTAAC 1 chr7:135871663-135872163 ( 38) ATGGTTTTACAGGCAAGTTTAC 1 chr8:144834879-144835379 ( 42) ATGGTTTTACAGATTAGCTCCA 1 chr2:65626187-65626687 ( 43) ACAGTTTTACAGTAAAATTCTA 1 chr14:100286859-10028735 ( 43) GTGGCCTCACGGGTGCTTTTTA 1 chr3:126359250-126359750 ( 19) ATGGTTTTATAGGCAAGGTCAT 1 chr15:96240919-96241419 ( 44) ATGGTTTTACAGATGACATTAT 1 chr10:86759526-86760026 ( 43) ATGGTCACATAGGGGAGGTCTT 1 chr9:129741133-129741633 ( 19) CTGGGTTTACAGGAGTTTTGTA 1 chr21:44393387-44393887 ( 42) ATGGACTCACAGGGGAGTCGAC 1 chr10:95732866-95733366 ( 54) CTGGCCGCTCTGGGAATGTCTG 1 chr10:86952669-86953169 ( 26) ACGGCCGCTCTGGGAGTGTCTG 1 chr12:56882341-56882841 ( 64) ATGGCCGCTCTGGGAGTGTCCG 1 chr9:137945508-137946008 ( 53) GTAGATGATCTGGGTAAGTCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGTTTYACTGGTGAATTCTA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47163 bayes= 6.5483 E= 5.1e-415 161 -350 -92 -1336 -1336 -69 -450 159 -81 -1336 192 -390 -1336 -350 217 -490 -173 14 -41 86 -1336 -118 -1336 167 -390 -450 -218 170 -490 92 -450 101 174 -450 -1336 -290 -1336 197 -1336 -90 5 -1336 -192 119 -231 -1336 213 -1336 -290 -450 213 -490 -209 -250 -150 153 -158 -1336 204 -390 172 -450 -218 -490 140 -250 -92 -158 -290 -192 -133 153 -1336 -218 -350 172 -231 171 -218 -58 -144 -92 -450 144 133 -133 -169 -109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGTTTYACTGGTGAATTCTA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 105 E= 5.1e-415 0.866667 0.019048 0.114286 0.000000 0.000000 0.133333 0.009524 0.857143 0.161905 0.000000 0.819048 0.019048 0.000000 0.019048 0.971429 0.009524 0.085714 0.238095 0.161905 0.514286 0.000000 0.095238 0.000000 0.904762 0.019048 0.009524 0.047619 0.923810 0.009524 0.409524 0.009524 0.571429 0.952381 0.009524 0.000000 0.038095 0.000000 0.847619 0.000000 0.152381 0.295238 0.000000 0.057143 0.647619 0.057143 0.000000 0.942857 0.000000 0.038095 0.009524 0.942857 0.009524 0.066667 0.038095 0.076190 0.819048 0.095238 0.000000 0.885714 0.019048 0.933333 0.009524 0.047619 0.009524 0.752381 0.038095 0.114286 0.095238 0.038095 0.057143 0.085714 0.819048 0.000000 0.047619 0.019048 0.933333 0.057143 0.704762 0.047619 0.190476 0.104762 0.114286 0.009524 0.771429 0.714286 0.085714 0.066667 0.133333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGTTTYACTGGTGAATTCTA MEME-2 regular expression -------------------------------------------------------------------------------- ATGG[TC]TT[TC]AC[TA]GGTGAATTCTA -------------------------------------------------------------------------------- Time 710.66 secs. ******************************************************************************** ******************************************************************************** MOTIF YATGACTTACACAGACCATYYAYGACATGCT MEME-3 width = 31 sites = 27 llr = 835 E-value = 2.0e-189 ******************************************************************************** -------------------------------------------------------------------------------- Motif YATGACTTACACAGACCATYYAYGACATGCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 17:3a:::a:9:a1a::9:::9:29:9:::: pos.-specific C 5:2::a:::9:9:::99::54:3::9:::9: probability G :3:7::::::1::9:1:::::1:8::::9:: matrix T 4:7:::9a:1:1::::1:a46:6::::a:1a bits 2.2 * 2.0 * 1.8 * * * * * * ** 1.5 ** *** ****** * * * **** Relative 1.3 **************** * ******** Entropy 1.1 **************** * ******** (44.6 bits) 0.9 ****************************** 0.7 ******************************* 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel CATGACTTACACAGACCATCTATGACATGCT consensus TG A TC C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YATGACTTACACAGACCATYYAYGACATGCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr5:91591010-91591510 + 63 3.22e-19 caaatccttt catgacttacacagaccatctatgacatgct tggtctt chr3:133792063-133792563 - 48 1.23e-18 TAAATTATTT CATGACTTACACAGACCATCTACGACATGCT TTGACTTTCT chr12:31849031-31849531 - 15 4.12e-18 TTCATATTTT TATGACTTACACAGACCATTTATGACATGCT TGGACTTTCG chr13:41268710-41269210 + 47 1.19e-17 atcctattct tgtgacttacacagaccattcatgacatgct tggactttct chr11:62088243-62088743 - 29 1.19e-17 ATCCTTTTAT TGTGACTTACACAGACCATTCATGACATGCT TGGACTTTCT chr13:49877583-49878083 - 3 2.27e-17 ACAGACAACG TATGACTTACACAGACCATCTGTGACATGCT TG chr1:27181846-27182346 - 12 4.12e-17 TCAATCCTTT CATGACTTACACAGACCATGTATGACATGCT TGGACTTTCT chr6:137188805-137189305 + 35 1.00e-16 ctaactttat tatgacttacacagaccattcacaacatgct tggactttct chr22:50648656-50649156 - 39 1.33e-16 ATCCTCTTAT TGTGACTTACACAGACCATTCGTGACATGCT TGGACTTTCT chr2:174510533-174511033 + 55 3.50e-16 tgaaccttaa cgtgacttacacagaccatttatgacttgct tggactttct chr3:195606475-195606975 - 7 3.50e-16 ATCCTCTTAC TGTGACTTACACAGACCATTAATGACATGCT TGGACT chr1:67250006-67250506 + 56 4.76e-16 tgtatccttt catgacttatgcagaccatctatgacatgct tagactttct chr1:22993146-22993646 - 6 5.20e-16 TAAATCTTAT TATGACTTACACAGACCATTCATGATATGCT TAGAC chr1:228117987-228118487 + 55 7.72e-16 cgaatccttt cacaacttacacagagcatctatgacatgct tggattttct chr7:87354674-87355174 + 59 9.39e-16 caaatcttat catgacttacacaaaccgtctatgacatgct tggactttct chr20:805631-806131 - 63 3.06e-15 CTCTTAT TATAACTTAAACAGACCATTCACGACATGCT TGGACTTTCT chr1:77175177-77175677 - 26 4.12e-15 TGAATCCTTT CATGACTTACACAGACCACCTACGTCATGCT TGGACTTTCT chr1:203966665-203967165 + 70 8.64e-15 aatttccttt cacaacttacacagactatctacaacatgct chr14:100004344-10000484 + 37 1.02e-14 atcctcttat tgtgacttacatacaccattcatgacatgct tggacttccc chr12:30774547-30775047 - 25 1.83e-14 ATCATTTTAT TGTGACTTACAAAGGCCATTCATGACATGCT TGAACTTTCT chr7:104179122-104179622 - 22 4.17e-14 CAAACCTTGT AATGACTTACGTAAACCATCCATGACATGCT TAGATCTTTA chr3:170338717-170339217 + 47 4.51e-14 aattcccttt cacgacttacacagaccatctgagacattct tggactttgt chr7:134089406-134089906 + 61 9.21e-14 atgggaattg cgtgacctacacagactatctacgacatact ttgactttg chr5:54347142-54347642 - 46 1.24e-13 TAAATTATTT CACAACTTATGCAGACAATCTATGACATGCT TGGACTTTCT chr9:135000579-135001079 - 31 6.73e-13 TTCACAAATT TTAAACTTACACAGACCATCTACAGCATGCT TGAACTTTCT chr10:29407210-29407710 - 10 1.22e-12 TAAATCTTTT CACAGCATACACAGACCATCTACAACATGTT TGGACTTTC chr22:23944162-23944662 + 62 1.35e-08 caaaagcttg aagaactaacacaaagccttcacaaactctt ccaaaaaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YATGACTTACACAGACCATYYAYGACATGCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:91591010-91591510 3.2e-19 62_[+3]_7 chr3:133792063-133792563 1.2e-18 47_[-3]_22 chr12:31849031-31849531 4.1e-18 14_[-3]_55 chr13:41268710-41269210 1.2e-17 46_[+3]_23 chr11:62088243-62088743 1.2e-17 28_[-3]_41 chr13:49877583-49878083 2.3e-17 2_[-3]_67 chr1:27181846-27182346 4.1e-17 11_[-3]_58 chr6:137188805-137189305 1e-16 34_[+3]_35 chr22:50648656-50649156 1.3e-16 38_[-3]_31 chr2:174510533-174511033 3.5e-16 54_[+3]_15 chr3:195606475-195606975 3.5e-16 6_[-3]_63 chr1:67250006-67250506 4.8e-16 55_[+3]_14 chr1:22993146-22993646 5.2e-16 5_[-3]_64 chr1:228117987-228118487 7.7e-16 54_[+3]_15 chr7:87354674-87355174 9.4e-16 58_[+3]_11 chr20:805631-806131 3.1e-15 62_[-3]_7 chr1:77175177-77175677 4.1e-15 25_[-3]_44 chr1:203966665-203967165 8.6e-15 69_[+3] chr14:100004344-10000484 1e-14 36_[+3]_33 chr12:30774547-30775047 1.8e-14 24_[-3]_45 chr7:104179122-104179622 4.2e-14 21_[-3]_48 chr3:170338717-170339217 4.5e-14 46_[+3]_23 chr7:134089406-134089906 9.2e-14 60_[+3]_9 chr5:54347142-54347642 1.2e-13 45_[-3]_24 chr9:135000579-135001079 6.7e-13 30_[-3]_39 chr10:29407210-29407710 1.2e-12 9_[-3]_60 chr22:23944162-23944662 1.3e-08 61_[+3]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YATGACTTACACAGACCATYYAYGACATGCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YATGACTTACACAGACCATYYAYGACATGCT width=31 seqs=27 chr5:91591010-91591510 ( 63) CATGACTTACACAGACCATCTATGACATGCT 1 chr3:133792063-133792563 ( 48) CATGACTTACACAGACCATCTACGACATGCT 1 chr12:31849031-31849531 ( 15) TATGACTTACACAGACCATTTATGACATGCT 1 chr13:41268710-41269210 ( 47) TGTGACTTACACAGACCATTCATGACATGCT 1 chr11:62088243-62088743 ( 29) TGTGACTTACACAGACCATTCATGACATGCT 1 chr13:49877583-49878083 ( 3) TATGACTTACACAGACCATCTGTGACATGCT 1 chr1:27181846-27182346 ( 12) CATGACTTACACAGACCATGTATGACATGCT 1 chr6:137188805-137189305 ( 35) TATGACTTACACAGACCATTCACAACATGCT 1 chr22:50648656-50649156 ( 39) TGTGACTTACACAGACCATTCGTGACATGCT 1 chr2:174510533-174511033 ( 55) CGTGACTTACACAGACCATTTATGACTTGCT 1 chr3:195606475-195606975 ( 7) TGTGACTTACACAGACCATTAATGACATGCT 1 chr1:67250006-67250506 ( 56) CATGACTTATGCAGACCATCTATGACATGCT 1 chr1:22993146-22993646 ( 6) TATGACTTACACAGACCATTCATGATATGCT 1 chr1:228117987-228118487 ( 55) CACAACTTACACAGAGCATCTATGACATGCT 1 chr7:87354674-87355174 ( 59) CATGACTTACACAAACCGTCTATGACATGCT 1 chr20:805631-806131 ( 63) TATAACTTAAACAGACCATTCACGACATGCT 1 chr1:77175177-77175677 ( 26) CATGACTTACACAGACCACCTACGTCATGCT 1 chr1:203966665-203967165 ( 70) CACAACTTACACAGACTATCTACAACATGCT 1 chr14:100004344-10000484 ( 37) TGTGACTTACATACACCATTCATGACATGCT 1 chr12:30774547-30775047 ( 25) TGTGACTTACAAAGGCCATTCATGACATGCT 1 chr7:104179122-104179622 ( 22) AATGACTTACGTAAACCATCCATGACATGCT 1 chr3:170338717-170339217 ( 47) CACGACTTACACAGACCATCTGAGACATTCT 1 chr7:134089406-134089906 ( 61) CGTGACCTACACAGACTATCTACGACATACT 1 chr5:54347142-54347642 ( 46) CACAACTTATGCAGACAATCTATGACATGCT 1 chr9:135000579-135001079 ( 31) TTAAACTTACACAGACCATCTACAGCATGCT 1 chr10:29407210-29407710 ( 10) CACAGCATACACAGACCATCTACAACATGTT 1 chr22:23944162-23944662 ( 62) AAGAACTAACACAAAGCCTTCACAAACTCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YATGACTTACACAGACCATYYAYGACATGCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 41790 bayes= 6.41822 E= 2.0e-189 -194 116 -1140 64 123 -1140 46 -294 -294 -22 -254 138 -13 -1140 178 -1140 176 -1140 -254 -1140 -1140 221 -1140 -1140 -294 -254 -1140 170 -294 -1140 -1140 176 181 -1140 -1140 -1140 -294 204 -1140 -194 164 -1140 -96 -1140 -294 204 -1140 -194 181 -1140 -1140 -1140 -135 -254 198 -1140 176 -1140 -254 -1140 -1140 210 -154 -1140 -294 204 -1140 -194 170 -254 -254 -1140 -1140 -254 -1140 176 -1140 126 -254 64 -294 78 -1140 106 164 -1140 -96 -1140 -294 63 -1140 115 -62 -1140 192 -1140 170 -1140 -254 -294 -294 210 -1140 -294 170 -254 -1140 -294 -1140 -1140 -1140 181 -294 -254 204 -294 -1140 210 -1140 -194 -1140 -1140 -1140 181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YATGACTTACACAGACCATYYAYGACATGCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 27 E= 2.0e-189 0.074074 0.481481 0.000000 0.444444 0.666667 0.000000 0.296296 0.037037 0.037037 0.185185 0.037037 0.740741 0.259259 0.000000 0.740741 0.000000 0.962963 0.000000 0.037037 0.000000 0.000000 1.000000 0.000000 0.000000 0.037037 0.037037 0.000000 0.925926 0.037037 0.000000 0.000000 0.962963 1.000000 0.000000 0.000000 0.000000 0.037037 0.888889 0.000000 0.074074 0.888889 0.000000 0.111111 0.000000 0.037037 0.888889 0.000000 0.074074 1.000000 0.000000 0.000000 0.000000 0.111111 0.037037 0.851852 0.000000 0.962963 0.000000 0.037037 0.000000 0.000000 0.925926 0.074074 0.000000 0.037037 0.888889 0.000000 0.074074 0.925926 0.037037 0.037037 0.000000 0.000000 0.037037 0.000000 0.962963 0.000000 0.518519 0.037037 0.444444 0.037037 0.370370 0.000000 0.592593 0.888889 0.000000 0.111111 0.000000 0.037037 0.333333 0.000000 0.629630 0.185185 0.000000 0.814815 0.000000 0.925926 0.000000 0.037037 0.037037 0.037037 0.925926 0.000000 0.037037 0.925926 0.037037 0.000000 0.037037 0.000000 0.000000 0.000000 1.000000 0.037037 0.037037 0.888889 0.037037 0.000000 0.925926 0.000000 0.074074 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YATGACTTACACAGACCATYYAYGACATGCT MEME-3 regular expression -------------------------------------------------------------------------------- [CT][AG]T[GA]ACTTACACAGACCAT[CT][TC]A[TC]GACATGCT -------------------------------------------------------------------------------- Time 1004.99 secs. ******************************************************************************** ******************************************************************************** MOTIF RCTRCAGGAGACCAGGGCDTATTTCATCCCTTATCTWCAACYRYATAAGA MEME-4 width = 50 sites = 12 llr = 679 E-value = 1.3e-151 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCTRCAGGAGACCAGGGCDTATTTCATCCCTTATCTWCAACYRYATAAGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 6::3:9::a:a::91:::3:a::::a:1::::a:::31a9:131839928 pos.-specific C :a::a::::::aa::::9::::::a::8aa::::a:18:1a425:1:::1 probability G 4::7::aa:a:::19aa:3:::::::1:::::::::::::::5:2::18: matrix T ::a::1:::::::::::14a:aaa::91::aa:a:a61:::5:4171:11 bits 2.2 * * ** * ** ** * ** * * 2.0 * * ** * ** ** * ** * * 1.8 ** * ******* **** ******* ******** * * 1.5 ** * ******* **** ******* ******** * * Relative 1.3 ** ************** ***************** **** ** Entropy 1.1 ****************** ***************** **** **** (81.6 bits) 0.9 ****************** ***************** **** * **** 0.7 ****************** ******************************* 0.4 ************************************************** 0.2 ************************************************** 0.0 -------------------------------------------------- Multilevel ACTGCAGGAGACCAGGGCTTATTTCATCCCTTATCTTCAACTGCATAAGA consensus G A G A CAT A sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTRCAGGAGACCAGGGCDTATTTCATCCCTTATCTWCAACYRYATAAGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------------------------------- chr12:56882341-56882841 + 14 1.83e-29 gcctgagggc actgcaggagaccagggcatatttcatcccttatcttcaactgcataaga cggacactcc chr13:52309838-52310338 + 13 8.79e-29 gcctgagggc actgcaggagaccagggcgtatttcatcccttatcttcaactgcgtaaga cagacactcc chr5:134284380-134284880 + 33 2.33e-28 gcctgagggc actgcaggagaccagggcgtatttcatcccttatcttcaactgcacaaga cagatactcc chr12:52761099-52761599 + 48 3.41e-28 gcctgggagc gctacaggagaccagggcttatttcatcccttatctacaactgtataaga cag chr1:84287354-84287854 - 37 1.80e-27 GCCTGAGGGC ACTGCAGGAGACCGGGGCTTATTTCATCCCTTATCTACAACTGTATAAGA CAGACACTCC chr14:22344174-22344674 + 16 2.03e-27 gcctaggggc gctgcaggagaccagggcttatttcataccttatctacaactgcataaga cagacactcc chr1:225006299-225006799 - 36 8.89e-27 GCCTGAGGGC GCTGCAGGAGACCAGGGCGTATTTCATCCCTTATCTTCAACCCCAATAGA CAGACACTTC chr12:56653730-56654230 - 42 2.09e-26 CCTGGGGGT GCTACAGGAGACCAGGGCTTATTTCATCCCTTATCTATAACCATATAAGA CACACACTCC chr10:95732866-95733366 + 4 2.51e-26 agt gctactggagaccagggcttatttcatcccttatcttcaaccataaaaga cagacattcc chr6:33101112-33101612 + 3 1.91e-25 gc actgcaggagaccagggcatatttcatcccttatcttcaaccatgtaatt cagacactcc chr17:80155464-80155964 - 26 4.75e-25 GCCTGAGGGC ACTACAGGAGACCAAGGTGTATTTCATCCCTTATCTTCAACCACATAAAA CAGACACTCC chr3:197967533-197968033 + 1 8.26e-21 . actgcaggagaccagggcatatttcagtccttatctcaaccacataagac agacacttcc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTRCAGGAGACCAGGGCDTATTTCATCCCTTATCTWCAACYRYATAAGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:56882341-56882841 1.8e-29 13_[+4]_37 chr13:52309838-52310338 8.8e-29 12_[+4]_38 chr5:134284380-134284880 2.3e-28 32_[+4]_18 chr12:52761099-52761599 3.4e-28 47_[+4]_3 chr1:84287354-84287854 1.8e-27 36_[-4]_14 chr14:22344174-22344674 2e-27 15_[+4]_35 chr1:225006299-225006799 8.9e-27 35_[-4]_15 chr12:56653730-56654230 2.1e-26 41_[-4]_9 chr10:95732866-95733366 2.5e-26 3_[+4]_47 chr6:33101112-33101612 1.9e-25 2_[+4]_48 chr17:80155464-80155964 4.7e-25 25_[-4]_25 chr3:197967533-197968033 8.3e-21 [+4]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTRCAGGAGACCAGGGCDTATTTCATCCCTTATCTWCAACYRYATAAGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCTRCAGGAGACCAGGGCDTATTTCATCCCTTATCTWCAACYRYATAAGA width=50 seqs=12 chr12:56882341-56882841 ( 14) ACTGCAGGAGACCAGGGCATATTTCATCCCTTATCTTCAACTGCATAAGA 1 chr13:52309838-52310338 ( 13) ACTGCAGGAGACCAGGGCGTATTTCATCCCTTATCTTCAACTGCGTAAGA 1 chr5:134284380-134284880 ( 33) ACTGCAGGAGACCAGGGCGTATTTCATCCCTTATCTTCAACTGCACAAGA 1 chr12:52761099-52761599 ( 48) GCTACAGGAGACCAGGGCTTATTTCATCCCTTATCTACAACTGTATAAGA 1 chr1:84287354-84287854 ( 37) ACTGCAGGAGACCGGGGCTTATTTCATCCCTTATCTACAACTGTATAAGA 1 chr14:22344174-22344674 ( 16) GCTGCAGGAGACCAGGGCTTATTTCATACCTTATCTACAACTGCATAAGA 1 chr1:225006299-225006799 ( 36) GCTGCAGGAGACCAGGGCGTATTTCATCCCTTATCTTCAACCCCAATAGA 1 chr12:56653730-56654230 ( 42) GCTACAGGAGACCAGGGCTTATTTCATCCCTTATCTATAACCATATAAGA 1 chr10:95732866-95733366 ( 4) GCTACTGGAGACCAGGGCTTATTTCATCCCTTATCTTCAACCATAAAAGA 1 chr6:33101112-33101612 ( 3) ACTGCAGGAGACCAGGGCATATTTCATCCCTTATCTTCAACCATGTAATT 1 chr17:80155464-80155964 ( 26) ACTACAGGAGACCAAGGTGTATTTCATCCCTTATCTTCAACCACATAAAA 1 chr3:197967533-197968033 ( 1) ACTGCAGGAGACCAGGGCATATTTCAGTCCTTATCTCAACCACATAAGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTRCAGGAGACCAGGGCDTATTTCATCCCTTATCTWCAACYRYATAAGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 50 n= 30447 bayes= 5.9642 E= 1.3e-151 104 -1023 95 -1023 -1023 221 -1023 -1023 -1023 -1023 -1023 181 23 -1023 163 -1023 -1023 221 -1023 -1023 169 -1023 -1023 -177 -1023 -1023 221 -1023 -1023 -1023 221 -1023 181 -1023 -1023 -1023 -1023 -1023 221 -1023 181 -1023 -1023 -1023 -1023 221 -1023 -1023 -1023 221 -1023 -1023 169 -1023 -137 -1023 -177 -1023 209 -1023 -1023 -1023 221 -1023 -1023 -1023 221 -1023 -1023 209 -1023 -177 -18 -1023 63 55 -1023 -1023 -1023 181 181 -1023 -1023 -1023 -1023 -1023 -1023 181 -1023 -1023 -1023 181 -1023 -1023 -1023 181 -1023 221 -1023 -1023 181 -1023 -1023 -1023 -1023 -1023 -137 169 -177 195 -1023 -177 -1023 221 -1023 -1023 -1023 221 -1023 -1023 -1023 -1023 -1023 181 -1023 -1023 -1023 181 181 -1023 -1023 -1023 -1023 -1023 -1023 181 -1023 221 -1023 -1023 -1023 -1023 -1023 181 23 -137 -1023 104 -177 195 -1023 -177 181 -1023 -1023 -1023 169 -137 -1023 -1023 -1023 221 -1023 -1023 -177 95 -1023 81 23 -37 121 -1023 -177 121 -1023 55 140 -1023 -37 -177 -18 -137 -1023 123 169 -1023 -1023 -177 169 -1023 -137 -1023 -77 -1023 180 -177 155 -137 -1023 -177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTRCAGGAGACCAGGGCDTATTTCATCCCTTATCTWCAACYRYATAAGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 50 nsites= 12 E= 1.3e-151 0.583333 0.000000 0.416667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.333333 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.916667 0.000000 0.000000 0.083333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.916667 0.000000 0.083333 0.000000 0.083333 0.000000 0.916667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.916667 0.000000 0.083333 0.250000 0.000000 0.333333 0.416667 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.083333 0.916667 0.083333 0.833333 0.000000 0.083333 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.333333 0.083333 0.000000 0.583333 0.083333 0.833333 0.000000 0.083333 1.000000 0.000000 0.000000 0.000000 0.916667 0.083333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.083333 0.416667 0.000000 0.500000 0.333333 0.166667 0.500000 0.000000 0.083333 0.500000 0.000000 0.416667 0.750000 0.000000 0.166667 0.083333 0.250000 0.083333 0.000000 0.666667 0.916667 0.000000 0.000000 0.083333 0.916667 0.000000 0.083333 0.000000 0.166667 0.000000 0.750000 0.083333 0.833333 0.083333 0.000000 0.083333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTRCAGGAGACCAGGGCDTATTTCATCCCTTATCTWCAACYRYATAAGA MEME-4 regular expression -------------------------------------------------------------------------------- [AG]CT[GA]CAGGAGACCAGGGC[TGA]TATTTCATCCCTTATCT[TA]CAAC[TC][GA][CT]A[TA]AAGA -------------------------------------------------------------------------------- Time 1301.10 secs. ******************************************************************************** ******************************************************************************** MOTIF CCAAAYATTTAARGAA MEME-5 width = 16 sites = 70 llr = 884 E-value = 7.1e-093 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCAAAYATTTAARGAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 11a8a:7::18943aa pos.-specific C 78:::612:1:::::: probability G :::1:1::112157:: matrix T 21:::32797::1::: bits 2.2 2.0 1.8 * * 1.5 * * * ** Relative 1.3 ** * * * ** Entropy 1.1 **** * ** *** (18.2 bits) 0.9 ****** ** ** *** 0.7 ****** ** ****** 0.4 **************** 0.2 **************** 0.0 ---------------- Multilevel CCAAACATTTAAGGAA consensus TTC AA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAAAYATTTAARGAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr6:27004086-27004586 - 43 4.56e-10 GTGAATTCTA CCAAACATTTAAGGAA GAAATTATAC chrX:12189080-12189580 + 55 4.56e-10 gtgaattcta ccaaacatttaaggaa gaaattatac chr6:29543656-29544156 - 28 1.06e-09 GTGAATTCTA CCAAACATTTAAAGAA AAAAATAATA chr6:136457132-136457632 + 53 1.06e-09 gtgaattcca ccaaacatttaaagaa ttaatgccaa chr1:182465455-182465955 + 72 1.06e-09 gacttatacc ccaaacatttaaagaa gaattaatac chr17:40503412-40503912 - 37 4.54e-09 GTGAAATCTA CCAAACATTTGAGGAA GAAATAGGAC chr9:128134047-128134547 - 18 4.54e-09 GTGAATTCTA CCAAATATTTAAAGAA AATATAATAC chr20:58934679-58935179 + 73 4.54e-09 gtgaattcta ccaaacatttgaggaa ctaataccaa chr15:68760957-68761457 + 81 4.54e-09 gagaattcta ccaaatatttaaagaa ctaa chr9:89857773-89858273 + 53 4.54e-09 gtgaattcta ccaaatatttaaagaa aatataatac chr5:180146654-180147154 - 40 8.58e-09 GTGAATTCTA CCAAACATTTAAAAAA GAACCATCAC chr1:85014547-85015047 - 29 1.32e-08 GTGAATTCTA CTAAACATTTAAGGAA CAAATACCAA chr3:9518287-9518787 - 5 1.32e-08 GTGAATTCTG CCAAACATTAAAGGAA GAAA chr12:108683540-10868404 + 78 1.32e-08 gtgagtgtca ccaaatattcaaggaa gagatca chr10:22952316-22952816 + 73 1.32e-08 gtgaattcta ccaaacctttaaggaa gaaataatac chr10:86759526-86760026 - 27 2.15e-08 GGGAGGTCTT CCAAACTTTCAAGGAA CAGATAATCC chr1:236372410-236372910 - 31 2.85e-08 GTGAGTTTTA CCAAACATTTAATGAA GAAAATTATA chr18:11358790-11359290 + 34 2.85e-08 gtgatttcta ccaaatatttaaaaaa gaaatactat chr1:174212817-174213317 + 84 3.33e-08 gtgaactttc ccaaacatttagagaa c chr4:1120371-1120871 + 80 3.98e-08 gtgaattcta acaaacatttaaggaa gaaat chr5:77799798-77800298 + 61 3.98e-08 gtgaattcta tcaaacatttaagaaa gatattatac chr21:37611143-37611643 + 64 3.98e-08 gtgaattcta ccaaagacttaaggaa gaaatgatac chr1:62626544-62627044 + 70 4.71e-08 gtgaattctt ccaaactttcaaagaa taccaatcct chr15:76750110-76750610 + 42 5.21e-08 gtgaattcta tcaaacacttaaagaa ctgacaccaa chr1:15267313-15267813 - 24 6.34e-08 GTGAATTCTA TCAGACATTTAAGGAA GAAATGATAC chr10:98148725-98149225 - 25 7.70e-08 GTGAATTCTA CCAGACATTCAAAGAA TACCAATTCT chr1:47861402-47861902 + 77 8.72e-08 gtgaattctg ccaaacatttaggaaa gagattat chr13:48330458-48330958 + 62 8.72e-08 gtgaattcta ccagacatttgaagaa taccaatcct chr5:176261660-176262160 + 29 1.06e-07 gtgaattcca acaaatatttaaggaa gaaatgataa chr11:10045599-10046099 + 75 1.06e-07 gtggattctt ttaaacatttaaggaa gaagttacag chrX:1479766-1480266 + 82 1.50e-07 atgaattttc cccaacatttaaggaa gaa chr1:33106095-33106595 + 37 1.70e-07 gtgaattcta ccaaacatgtaaaaaa gaattaatac chr19:28696653-28697153 + 53 1.96e-07 gagaaatcta ttaaacatttaaagaa ttaacagtaa chr22:50211977-50212477 - 8 2.19e-07 GCAATCCTTC TCAAACTTTGAAGGAA AAAAATG chr1:42602446-42602946 + 59 3.29e-07 gtgatttcta ccaaacatttaagaat agattatatc chr17:2628448-2628948 - 25 4.50e-07 CAGAATTCTA TCAGACATTCAAAGAA GAGTTGGTAC chr10:11420063-11420563 + 85 5.40e-07 ttgaatcccc ccaaatatttacagaa chr2:25861267-25861767 + 61 5.40e-07 gtgaactcca caaaatacttaaagaa ctatatcaat chr5:6063270-6063770 + 80 6.65e-07 gtgaattcta ccaaaggcttaaggaa gaaat chr7:129031346-129031846 + 63 9.65e-07 gtgaattcta caaaacatgtaaagaa ataacattaa chr17:82340832-82341332 + 36 1.52e-06 caaatagttt ccaaattctagaggaa ccagggagag chr9:94267256-94267756 + 53 1.52e-06 cagatagttt ccaaattctagaggaa ccaggtagag chr10:104234917-10423541 - 76 1.80e-06 AAATAGTTT CCAAATTTTGGAAAAA TCAGGTAGAG chr19:49320687-49321187 + 40 1.96e-06 gtgaattcta ctaaacctttaatgaa ttaatatcaa chr2:8983204-8983704 + 58 2.14e-06 gagaattcta tcaaatgtttaaaaaa gaattaatac chr3:113857824-113858324 - 46 2.14e-06 GAGAATTCTA CAAAACATTAAAAAAA TTAATTCTAT chr13:99182385-99182885 + 9 2.53e-06 aatagttt ccaaattctggagaaa ccaggtagag chr15:66889254-66889754 + 2 2.53e-06 t ccaaattctggagaaa tcaggtagag chr1:82625590-82626090 - 26 2.53e-06 CAAATAGTTT CCAAATTCTGGAGAAA TTAGGTAGAG chr21:43309827-43310327 + 82 2.75e-06 ggccattcca ccacactgttaaggaa cag chr14:104273365-10427386 - 41 2.98e-06 GTGAACTCTA CCAACTATGTAAGGAA TAAATACCAA chr6:85587672-85588172 + 36 4.80e-06 aatggtttta ccaaactttcatgaaa cagatacata chr2:237867662-237868162 - 52 4.80e-06 TGAAGACCCT CTAGATCTTCAAGGAA CTGCTTATTT chr6:126359887-126360387 - 42 5.17e-06 TCCCAGTCAA GCAAACACTGAGGGAA TTTGTTACAA chr12:92878738-92879238 + 50 5.57e-06 gtgaattcta gcaaacattcaaggta tacctcccta chr5:82283179-82283679 - 54 6.02e-06 GGATGTTTGA CTACACCTTCAAGGAA CAAATCATCC chr19:35385774-35386274 + 59 6.47e-06 gttcatgaac acagacacttagagaa acagaaaaaa chr10:92602130-92602630 - 16 6.47e-06 GTGAATTCTA TAAAACATTTCAAGAA GATCTAATAC chr16:47217265-47217765 + 7 6.98e-06 gcatct tcaaagtctaaaagaa ttaactgata chr16:50514038-50514538 + 37 6.98e-06 aggattagca ttaaatctttaaaaaa tattcagtgg chr10:121005847-12100634 - 42 1.07e-05 CAAGGAAGTT CTAAACATGTAAACAA AAGGTTGATA chr7:139004299-139004799 - 77 1.15e-05 AATAGTTT CTAAATTCTGGAGAAA TTAGGGAGAG chr10:2514907-2515407 + 78 1.32e-05 gtgaattcta ccaaagatttaatata gaaataa chr19:46389463-46389963 - 59 1.51e-05 CTTTGCCCAC CCAGAGATGCAGGGAA CAGAGGAACA chr7:128899402-128899902 - 77 1.61e-05 AATAGTTT CCAAATTCTGGATAAA TTAGGTAGAG chr6:119308193-119308693 + 79 1.72e-05 cactgatgag tcacatacttaaggat gagtca chr6:84362160-84362660 + 63 1.72e-05 TTCTAATGTG ACAAAGTGTTAAAGAA ATTTAATACT chr1:241630829-241631329 - 31 1.84e-05 GTGAACTTTT TCAAATGTTTAAATAA TGTCTATCCA chr13:17742611-17743111 - 54 1.84e-05 ATGTCCACAT CCAGATACTACAGAAA GAGTATTTCA chr3:60703573-60704073 - 7 2.53e-05 TACATGTAAA CTAGATATTTAAAAAC AGGTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAAAYATTTAARGAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:27004086-27004586 4.6e-10 42_[-5]_42 chrX:12189080-12189580 4.6e-10 54_[+5]_30 chr6:29543656-29544156 1.1e-09 27_[-5]_57 chr6:136457132-136457632 1.1e-09 52_[+5]_32 chr1:182465455-182465955 1.1e-09 71_[+5]_13 chr17:40503412-40503912 4.5e-09 36_[-5]_48 chr9:128134047-128134547 4.5e-09 17_[-5]_67 chr20:58934679-58935179 4.5e-09 72_[+5]_12 chr15:68760957-68761457 4.5e-09 80_[+5]_4 chr9:89857773-89858273 4.5e-09 52_[+5]_32 chr5:180146654-180147154 8.6e-09 39_[-5]_45 chr1:85014547-85015047 1.3e-08 28_[-5]_56 chr3:9518287-9518787 1.3e-08 4_[-5]_80 chr12:108683540-10868404 1.3e-08 77_[+5]_7 chr10:22952316-22952816 1.3e-08 72_[+5]_12 chr10:86759526-86760026 2.1e-08 26_[-5]_58 chr1:236372410-236372910 2.8e-08 30_[-5]_54 chr18:11358790-11359290 2.8e-08 33_[+5]_51 chr1:174212817-174213317 3.3e-08 83_[+5]_1 chr4:1120371-1120871 4e-08 79_[+5]_5 chr5:77799798-77800298 4e-08 60_[+5]_24 chr21:37611143-37611643 4e-08 63_[+5]_21 chr1:62626544-62627044 4.7e-08 69_[+5]_15 chr15:76750110-76750610 5.2e-08 41_[+5]_43 chr1:15267313-15267813 6.3e-08 23_[-5]_61 chr10:98148725-98149225 7.7e-08 24_[-5]_60 chr1:47861402-47861902 8.7e-08 76_[+5]_8 chr13:48330458-48330958 8.7e-08 61_[+5]_23 chr5:176261660-176262160 1.1e-07 28_[+5]_56 chr11:10045599-10046099 1.1e-07 74_[+5]_10 chrX:1479766-1480266 1.5e-07 81_[+5]_3 chr1:33106095-33106595 1.7e-07 36_[+5]_48 chr19:28696653-28697153 2e-07 52_[+5]_32 chr22:50211977-50212477 2.2e-07 7_[-5]_77 chr1:42602446-42602946 3.3e-07 58_[+5]_26 chr17:2628448-2628948 4.5e-07 24_[-5]_60 chr10:11420063-11420563 5.4e-07 84_[+5] chr2:25861267-25861767 5.4e-07 60_[+5]_24 chr5:6063270-6063770 6.7e-07 79_[+5]_5 chr7:129031346-129031846 9.7e-07 62_[+5]_22 chr17:82340832-82341332 1.5e-06 35_[+5]_49 chr9:94267256-94267756 1.5e-06 52_[+5]_32 chr10:104234917-10423541 1.8e-06 75_[-5]_9 chr19:49320687-49321187 2e-06 39_[+5]_45 chr2:8983204-8983704 2.1e-06 57_[+5]_27 chr3:113857824-113858324 2.1e-06 45_[-5]_39 chr13:99182385-99182885 2.5e-06 8_[+5]_76 chr15:66889254-66889754 2.5e-06 1_[+5]_83 chr1:82625590-82626090 2.5e-06 25_[-5]_59 chr21:43309827-43310327 2.7e-06 81_[+5]_3 chr14:104273365-10427386 3e-06 40_[-5]_44 chr6:85587672-85588172 4.8e-06 35_[+5]_49 chr2:237867662-237868162 4.8e-06 51_[-5]_33 chr6:126359887-126360387 5.2e-06 41_[-5]_43 chr12:92878738-92879238 5.6e-06 49_[+5]_35 chr5:82283179-82283679 6e-06 53_[-5]_31 chr19:35385774-35386274 6.5e-06 58_[+5]_26 chr10:92602130-92602630 6.5e-06 15_[-5]_69 chr16:47217265-47217765 7e-06 6_[+5]_78 chr16:50514038-50514538 7e-06 36_[+5]_48 chr10:121005847-12100634 1.1e-05 41_[-5]_43 chr7:139004299-139004799 1.2e-05 76_[-5]_8 chr10:2514907-2515407 1.3e-05 77_[+5]_7 chr19:46389463-46389963 1.5e-05 58_[-5]_26 chr7:128899402-128899902 1.6e-05 76_[-5]_8 chr6:119308193-119308693 1.7e-05 78_[+5]_6 chr6:84362160-84362660 1.7e-05 62_[+5]_22 chr1:241630829-241631329 1.8e-05 30_[-5]_54 chr13:17742611-17743111 1.8e-05 53_[-5]_31 chr3:60703573-60704073 2.5e-05 6_[-5]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAAAYATTTAARGAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCAAAYATTTAARGAA width=16 seqs=70 chr6:27004086-27004586 ( 43) CCAAACATTTAAGGAA 1 chrX:12189080-12189580 ( 55) CCAAACATTTAAGGAA 1 chr6:29543656-29544156 ( 28) CCAAACATTTAAAGAA 1 chr6:136457132-136457632 ( 53) CCAAACATTTAAAGAA 1 chr1:182465455-182465955 ( 72) CCAAACATTTAAAGAA 1 chr17:40503412-40503912 ( 37) CCAAACATTTGAGGAA 1 chr9:128134047-128134547 ( 18) CCAAATATTTAAAGAA 1 chr20:58934679-58935179 ( 73) CCAAACATTTGAGGAA 1 chr15:68760957-68761457 ( 81) CCAAATATTTAAAGAA 1 chr9:89857773-89858273 ( 53) CCAAATATTTAAAGAA 1 chr5:180146654-180147154 ( 40) CCAAACATTTAAAAAA 1 chr1:85014547-85015047 ( 29) CTAAACATTTAAGGAA 1 chr3:9518287-9518787 ( 5) CCAAACATTAAAGGAA 1 chr12:108683540-10868404 ( 78) CCAAATATTCAAGGAA 1 chr10:22952316-22952816 ( 73) CCAAACCTTTAAGGAA 1 chr10:86759526-86760026 ( 27) CCAAACTTTCAAGGAA 1 chr1:236372410-236372910 ( 31) CCAAACATTTAATGAA 1 chr18:11358790-11359290 ( 34) CCAAATATTTAAAAAA 1 chr1:174212817-174213317 ( 84) CCAAACATTTAGAGAA 1 chr4:1120371-1120871 ( 80) ACAAACATTTAAGGAA 1 chr5:77799798-77800298 ( 61) TCAAACATTTAAGAAA 1 chr21:37611143-37611643 ( 64) CCAAAGACTTAAGGAA 1 chr1:62626544-62627044 ( 70) CCAAACTTTCAAAGAA 1 chr15:76750110-76750610 ( 42) TCAAACACTTAAAGAA 1 chr1:15267313-15267813 ( 24) TCAGACATTTAAGGAA 1 chr10:98148725-98149225 ( 25) CCAGACATTCAAAGAA 1 chr1:47861402-47861902 ( 77) CCAAACATTTAGGAAA 1 chr13:48330458-48330958 ( 62) CCAGACATTTGAAGAA 1 chr5:176261660-176262160 ( 29) ACAAATATTTAAGGAA 1 chr11:10045599-10046099 ( 75) TTAAACATTTAAGGAA 1 chrX:1479766-1480266 ( 82) CCCAACATTTAAGGAA 1 chr1:33106095-33106595 ( 37) CCAAACATGTAAAAAA 1 chr19:28696653-28697153 ( 53) TTAAACATTTAAAGAA 1 chr22:50211977-50212477 ( 8) TCAAACTTTGAAGGAA 1 chr1:42602446-42602946 ( 59) CCAAACATTTAAGAAT 1 chr17:2628448-2628948 ( 25) TCAGACATTCAAAGAA 1 chr10:11420063-11420563 ( 85) CCAAATATTTACAGAA 1 chr2:25861267-25861767 ( 61) CAAAATACTTAAAGAA 1 chr5:6063270-6063770 ( 80) CCAAAGGCTTAAGGAA 1 chr7:129031346-129031846 ( 63) CAAAACATGTAAAGAA 1 chr17:82340832-82341332 ( 36) CCAAATTCTAGAGGAA 1 chr9:94267256-94267756 ( 53) CCAAATTCTAGAGGAA 1 chr10:104234917-10423541 ( 76) CCAAATTTTGGAAAAA 1 chr19:49320687-49321187 ( 40) CTAAACCTTTAATGAA 1 chr2:8983204-8983704 ( 58) TCAAATGTTTAAAAAA 1 chr3:113857824-113858324 ( 46) CAAAACATTAAAAAAA 1 chr13:99182385-99182885 ( 9) CCAAATTCTGGAGAAA 1 chr15:66889254-66889754 ( 2) CCAAATTCTGGAGAAA 1 chr1:82625590-82626090 ( 26) CCAAATTCTGGAGAAA 1 chr21:43309827-43310327 ( 82) CCACACTGTTAAGGAA 1 chr14:104273365-10427386 ( 41) CCAACTATGTAAGGAA 1 chr6:85587672-85588172 ( 36) CCAAACTTTCATGAAA 1 chr2:237867662-237868162 ( 52) CTAGATCTTCAAGGAA 1 chr6:126359887-126360387 ( 42) GCAAACACTGAGGGAA 1 chr12:92878738-92879238 ( 50) GCAAACATTCAAGGTA 1 chr5:82283179-82283679 ( 54) CTACACCTTCAAGGAA 1 chr19:35385774-35386274 ( 59) ACAGACACTTAGAGAA 1 chr10:92602130-92602630 ( 16) TAAAACATTTCAAGAA 1 chr16:47217265-47217765 ( 7) TCAAAGTCTAAAAGAA 1 chr16:50514038-50514538 ( 37) TTAAATCTTTAAAAAA 1 chr10:121005847-12100634 ( 42) CTAAACATGTAAACAA 1 chr7:139004299-139004799 ( 77) CTAAATTCTGGAGAAA 1 chr10:2514907-2515407 ( 78) CCAAAGATTTAATATA 1 chr19:46389463-46389963 ( 59) CCAGAGATGCAGGGAA 1 chr7:128899402-128899902 ( 77) CCAAATTCTGGATAAA 1 chr6:119308193-119308693 ( 79) TCACATACTTAAGGAT 1 chr6:84362160-84362660 ( 63) ACAAAGTGTTAAAGAA 1 chr1:241630829-241631329 ( 31) TCAAATGTTTAAATAA 1 chr13:17742611-17743111 ( 54) CCAGATACTACAGAAA 1 chr3:60703573-60704073 ( 7) CTAGATATTTAAAAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAAAYATTTAARGAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 50745 bayes= 9.60232 E= 7.1e-093 -231 176 -292 -61 -231 189 -1277 -99 179 -391 -1277 -1277 154 -233 -75 -1277 179 -391 -1277 -1277 -1277 140 -133 27 124 -159 -233 -41 -1277 8 -292 139 -1277 -1277 -159 171 -173 -60 -92 121 152 -292 -46 -1277 166 -391 -159 -431 59 -1277 125 -231 -7 -391 170 -431 177 -1277 -1277 -331 175 -391 -1277 -331 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAAAYATTTAARGAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 70 E= 7.1e-093 0.057143 0.728571 0.028571 0.185714 0.057143 0.800000 0.000000 0.142857 0.985714 0.014286 0.000000 0.000000 0.828571 0.042857 0.128571 0.000000 0.985714 0.014286 0.000000 0.000000 0.000000 0.571429 0.085714 0.342857 0.671429 0.071429 0.042857 0.214286 0.000000 0.228571 0.028571 0.742857 0.000000 0.000000 0.071429 0.928571 0.085714 0.142857 0.114286 0.657143 0.814286 0.028571 0.157143 0.000000 0.900000 0.014286 0.071429 0.014286 0.428571 0.000000 0.514286 0.057143 0.271429 0.014286 0.700000 0.014286 0.971429 0.000000 0.000000 0.028571 0.957143 0.014286 0.000000 0.028571 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAAAYATTTAARGAA MEME-5 regular expression -------------------------------------------------------------------------------- CCAAA[CT][AT][TC]TTAA[GA][GA]AA -------------------------------------------------------------------------------- Time 1596.23 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGATGTTAATCCRCTGGGTCTGAGTGCACTCAATAAARTCCT MEME-6 width = 43 sites = 11 llr = 445 E-value = 3.4e-069 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGATGTTAATCCRCTGGGTCTGAGTGCACTCAATAAARTCCT MEME-6 Description -------------------------------------------------------------------------------- Simplified A 1:17:1:197:::5::1:1:11:9::1:a::198199751::: pos.-specific C 11:1::1:11:a8:91:1128::1:11a:a:9:::1:111783 probability G :98128:2:2:::511997:11a:a:8::::::21::131::: matrix T 8:118197::a:21:8::18:8:::9::::a:1:8:1117327 bits 2.2 * * * * * 2.0 * * * * * 1.8 * ** * ** * * ***** 1.5 * *** * ** * * ***** * Relative 1.3 ** ** * *** * ** * *********** ** ** Entropy 1.1 ** *** * *** **** ** ************ ** *** (58.4 bits) 0.9 *** ********* *********************** *** 0.7 ************************************** **** 0.4 ******************************************* 0.2 ******************************************* 0.0 ------------------------------------------- Multilevel TGGATGTTAATCCACTGGGTCTGAGTGCACTCAATAAAATCCT consensus G G T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGATGTTAATCCRCTGGGTCTGAGTGCACTCAATAAARTCCT MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------- chr14:103204672-10320517 - 28 3.26e-25 GCCCAGTTTT TGGATGTTAATCCACTGGGTCTGAGTGCACTCAATAAAATTCT CATGTCCCAC chr21:38223841-38224341 - 47 8.19e-25 GCTCAGCCTT TGGATGTTAATCCGCCGGGTCTGAGTGCACTCAATAAAATCCT CCTTTTCCAT chr1:151907366-151907866 + 1 4.37e-24 . tggatgttagtccgctgggtctgagtgcactcaataaagttct cctgtctcac chr7:138527566-138528066 - 55 1.44e-22 CTT TGGATATTAATCCGCTGGGTATGAGTGCACTCAATAAAATCCT CCTGTTTCAC chr13:41148625-41149125 + 30 2.44e-21 gcccgaattt tggatgtaaatccactgggtctgagtgcactaaaaaaaatcct cctgttccac chr5:117713546-117714046 + 23 1.48e-20 gaccagtcgc tggatgttaatccactggatgtgagtgcactcagtaatgtcct cctattctac chr22:19316669-19317169 + 7 1.79e-20 ggtctt tggatgttaatccactaggccagagtgcactcaataacatccc cctgttctac chr21:38229222-38229722 - 27 5.18e-20 ACTCAGCCTT TGGTTGTTAATCTGCTGGGCCTGAGCACACTCAATAAAATCCT CCTGTTCCAC chr4:25223706-25224206 - 25 6.72e-19 GCCCAGTTTT CGGATGTTAATCTGCTGGTTCTGAGTGCACTCAATAAATCCTC CTATCTCACC chr19:16882061-16882561 + 40 2.38e-16 cccagttttt agacgttgagtccagtgggtctgagtgcactcaataaagatcc tcctgtatac chr5:139548980-139549480 + 26 9.17e-11 cctcactcat tctgggcgcctcctcggcctcggcgtccactctggctgcgctt gaggagccct -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGATGTTAATCCRCTGGGTCTGAGTGCACTCAATAAARTCCT MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:103204672-10320517 3.3e-25 27_[-6]_30 chr21:38223841-38224341 8.2e-25 46_[-6]_11 chr1:151907366-151907866 4.4e-24 [+6]_57 chr7:138527566-138528066 1.4e-22 54_[-6]_3 chr13:41148625-41149125 2.4e-21 29_[+6]_28 chr5:117713546-117714046 1.5e-20 22_[+6]_35 chr22:19316669-19317169 1.8e-20 6_[+6]_51 chr21:38229222-38229722 5.2e-20 26_[-6]_31 chr4:25223706-25224206 6.7e-19 24_[-6]_33 chr19:16882061-16882561 2.4e-16 39_[+6]_18 chr5:139548980-139549480 9.2e-11 25_[+6]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGATGTTAATCCRCTGGGTCTGAGTGCACTCAATAAARTCCT MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGATGTTAATCCRCTGGGTCTGAGTGCACTCAATAAARTCCT width=43 seqs=11 chr14:103204672-10320517 ( 28) TGGATGTTAATCCACTGGGTCTGAGTGCACTCAATAAAATTCT 1 chr21:38223841-38224341 ( 47) TGGATGTTAATCCGCCGGGTCTGAGTGCACTCAATAAAATCCT 1 chr1:151907366-151907866 ( 1) TGGATGTTAGTCCGCTGGGTCTGAGTGCACTCAATAAAGTTCT 1 chr7:138527566-138528066 ( 55) TGGATATTAATCCGCTGGGTATGAGTGCACTCAATAAAATCCT 1 chr13:41148625-41149125 ( 30) TGGATGTAAATCCACTGGGTCTGAGTGCACTAAAAAAAATCCT 1 chr5:117713546-117714046 ( 23) TGGATGTTAATCCACTGGATGTGAGTGCACTCAGTAATGTCCT 1 chr22:19316669-19317169 ( 7) TGGATGTTAATCCACTAGGCCAGAGTGCACTCAATAACATCCC 1 chr21:38229222-38229722 ( 27) TGGTTGTTAATCTGCTGGGCCTGAGCACACTCAATAAAATCCT 1 chr4:25223706-25224206 ( 25) CGGATGTTAATCTGCTGGTTCTGAGTGCACTCAATAAATCCTC 1 chr19:16882061-16882561 ( 40) AGACGTTGAGTCCAGTGGGTCTGAGTGCACTCAATAAAGATCC 1 chr5:139548980-139549480 ( 26) TCTGGGCGCCTCCTCGGCCTCGGCGTCCACTCTGGCTGCGCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGATGTTAATCCRCTGGGTCTGAGTGCACTCAATAAARTCCT MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 43 n= 34626 bayes= 11.1721 E= 3.4e-069 -164 -125 -1010 152 -1010 -125 207 -1010 -164 -1010 192 -164 135 -125 -125 -164 -1010 -1010 -25 152 -164 -1010 192 -164 -1010 -125 -1010 168 -164 -1010 -25 135 168 -125 -1010 -1010 135 -125 -25 -1010 -1010 -1010 -1010 181 -1010 221 -1010 -1010 -1010 192 -1010 -64 68 -1010 107 -164 -1010 207 -125 -1010 -1010 -125 -125 152 -164 -1010 207 -1010 -1010 -125 207 -1010 -164 -125 175 -164 -1010 -25 -1010 152 -164 192 -125 -1010 -164 -1010 -125 152 -1010 -1010 221 -1010 168 -125 -1010 -1010 -1010 -1010 221 -1010 -1010 -125 -1010 168 -164 -125 192 -1010 -1010 221 -1010 -1010 181 -1010 -1010 -1010 -1010 221 -1010 -1010 -1010 -1010 -1010 181 -164 207 -1010 -1010 168 -1010 -1010 -164 152 -1010 -25 -1010 -164 -1010 -125 152 168 -125 -1010 -1010 168 -1010 -1010 -164 135 -125 -125 -164 94 -125 34 -164 -164 -125 -125 135 -1010 175 -1010 -6 -1010 192 -1010 -64 -1010 34 -1010 135 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGATGTTAATCCRCTGGGTCTGAGTGCACTCAATAAARTCCT MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 43 nsites= 11 E= 3.4e-069 0.090909 0.090909 0.000000 0.818182 0.000000 0.090909 0.909091 0.000000 0.090909 0.000000 0.818182 0.090909 0.727273 0.090909 0.090909 0.090909 0.000000 0.000000 0.181818 0.818182 0.090909 0.000000 0.818182 0.090909 0.000000 0.090909 0.000000 0.909091 0.090909 0.000000 0.181818 0.727273 0.909091 0.090909 0.000000 0.000000 0.727273 0.090909 0.181818 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.818182 0.000000 0.181818 0.454545 0.000000 0.454545 0.090909 0.000000 0.909091 0.090909 0.000000 0.000000 0.090909 0.090909 0.818182 0.090909 0.000000 0.909091 0.000000 0.000000 0.090909 0.909091 0.000000 0.090909 0.090909 0.727273 0.090909 0.000000 0.181818 0.000000 0.818182 0.090909 0.818182 0.090909 0.000000 0.090909 0.000000 0.090909 0.818182 0.000000 0.000000 1.000000 0.000000 0.909091 0.090909 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.090909 0.000000 0.909091 0.090909 0.090909 0.818182 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.090909 0.909091 0.000000 0.000000 0.909091 0.000000 0.000000 0.090909 0.818182 0.000000 0.181818 0.000000 0.090909 0.000000 0.090909 0.818182 0.909091 0.090909 0.000000 0.000000 0.909091 0.000000 0.000000 0.090909 0.727273 0.090909 0.090909 0.090909 0.545455 0.090909 0.272727 0.090909 0.090909 0.090909 0.090909 0.727273 0.000000 0.727273 0.000000 0.272727 0.000000 0.818182 0.000000 0.181818 0.000000 0.272727 0.000000 0.727273 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGATGTTAATCCRCTGGGTCTGAGTGCACTCAATAAARTCCT MEME-6 regular expression -------------------------------------------------------------------------------- TGGATGTTAATCC[AG]CTGGGTCTGAGTGCACTCAATAAA[AG]T[CT]C[TC] -------------------------------------------------------------------------------- Time 1880.02 secs. ******************************************************************************** ******************************************************************************** MOTIF CAACTTTYACTTTTGGTGCATAAATTTYCTT MEME-7 width = 31 sites = 10 llr = 335 E-value = 1.5e-048 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAACTTTYACTTTTGGTGCATAAATTTYCTT MEME-7 Description -------------------------------------------------------------------------------- Simplified A :892::1:a12::::::::9:aaa::::::: pos.-specific C 8::8::14:9::::2:::91::::::26a:: probability G :21:111:::::::88:a::::::::::::1 matrix T 2:::9976::8aaa:2a:1:a:::aa84:a9 bits 2.2 * * 2.0 * * 1.8 ** *** *** ****** ** 1.5 ** **** *** ****** ** Relative 1.3 * **** ** *************** *** Entropy 1.1 ****** ************************ (48.3 bits) 0.9 ****** ************************ 0.7 ****** ************************ 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel CAACTTTTACTTTTGGTGCATAAATTTCCTT consensus TG A C A CT CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACTTTYACTTTTGGTGCATAAATTTYCTT MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr1:228117987-228118487 + 11 3.92e-18 taattcttag caactttcacttttggtgcataaattttctt ttacgaatcc chr6:148653111-148653611 - 21 3.92e-18 TCAGTAGTCT CAACTTTCACTTTTGGTGCATAAATTTTCTT TTATGAATCC chr7:103048729-103049229 + 52 3.92e-18 taattcttag caactttcacttttggtgcataaattttctt ttatgaatcc chr5:91591010-91591510 + 19 1.51e-17 taactctgag caacttctacttttggtgcataaatttcctt tcacaaatcc chr1:203966665-203967165 + 38 5.22e-17 taattcttag caacttttacttttggtgtataaatttcctt tcacaactta chr1:77175177-77175677 - 70 2.64e-16 . CAGCGTTTACTTTTGGTGCATAAATTTCCTT TCATGAATCC chr10:29407210-29407710 - 54 2.90e-16 TAATTCTTAG CGACTGTCACTTTTGGTGCATAAATTTTCTT TTATAAATCT chr1:67250006-67250506 + 12 4.97e-16 taactgttag caacttttaattttggtgcctaaatttcctt tcatgtatcc chr3:170338717-170339217 + 15 6.06e-14 taacaacctt tgaattgtacatttcttgcataaattccctt tcacgactta chr7:134089406-134089906 + 18 1.01e-13 taatcacctt taaattatacatttcttgcataaattccctg ctatgggaat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACTTTYACTTTTGGTGCATAAATTTYCTT MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:228117987-228118487 3.9e-18 10_[+7]_59 chr6:148653111-148653611 3.9e-18 20_[-7]_49 chr7:103048729-103049229 3.9e-18 51_[+7]_18 chr5:91591010-91591510 1.5e-17 18_[+7]_51 chr1:203966665-203967165 5.2e-17 37_[+7]_32 chr1:77175177-77175677 2.6e-16 69_[-7] chr10:29407210-29407710 2.9e-16 53_[-7]_16 chr1:67250006-67250506 5e-16 11_[+7]_58 chr3:170338717-170339217 6.1e-14 14_[+7]_55 chr7:134089406-134089906 1e-13 17_[+7]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACTTTYACTTTTGGTGCATAAATTTYCTT MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAACTTTYACTTTTGGTGCATAAATTTYCTT width=31 seqs=10 chr1:228117987-228118487 ( 11) CAACTTTCACTTTTGGTGCATAAATTTTCTT 1 chr6:148653111-148653611 ( 21) CAACTTTCACTTTTGGTGCATAAATTTTCTT 1 chr7:103048729-103049229 ( 52) CAACTTTCACTTTTGGTGCATAAATTTTCTT 1 chr5:91591010-91591510 ( 19) CAACTTCTACTTTTGGTGCATAAATTTCCTT 1 chr1:203966665-203967165 ( 38) CAACTTTTACTTTTGGTGTATAAATTTCCTT 1 chr1:77175177-77175677 ( 70) CAGCGTTTACTTTTGGTGCATAAATTTCCTT 1 chr10:29407210-29407710 ( 54) CGACTGTCACTTTTGGTGCATAAATTTTCTT 1 chr1:67250006-67250506 ( 12) CAACTTTTAATTTTGGTGCCTAAATTTCCTT 1 chr3:170338717-170339217 ( 15) TGAATTGTACATTTCTTGCATAAATTCCCTT 1 chr7:134089406-134089906 ( 18) TAAATTATACATTTCTTGCATAAATTCCCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACTTTYACTTTTGGTGCATAAATTTYCTT MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 41790 bayes= 12.2802 E= 1.5e-048 -997 189 -997 -51 149 -997 -11 -997 166 -997 -111 -997 -51 189 -997 -997 -997 -997 -111 166 -997 -997 -111 166 -150 -111 -111 130 -997 89 -997 108 181 -997 -997 -997 -150 206 -997 -997 -51 -997 -997 149 -997 -997 -997 181 -997 -997 -997 181 -997 -997 -997 181 -997 -11 189 -997 -997 -997 189 -51 -997 -997 -997 181 -997 -997 221 -997 -997 206 -997 -150 166 -111 -997 -997 -997 -997 -997 181 181 -997 -997 -997 181 -997 -997 -997 181 -997 -997 -997 -997 -997 -997 181 -997 -997 -997 181 -997 -11 -997 149 -997 147 -997 49 -997 221 -997 -997 -997 -997 -997 181 -997 -997 -111 166 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACTTTYACTTTTGGTGCATAAATTTYCTT MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 10 E= 1.5e-048 0.000000 0.800000 0.000000 0.200000 0.800000 0.000000 0.200000 0.000000 0.900000 0.000000 0.100000 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 0.000000 0.100000 0.900000 0.000000 0.000000 0.100000 0.900000 0.100000 0.100000 0.100000 0.700000 0.000000 0.400000 0.000000 0.600000 1.000000 0.000000 0.000000 0.000000 0.100000 0.900000 0.000000 0.000000 0.200000 0.000000 0.000000 0.800000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.900000 0.000000 0.100000 0.900000 0.100000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.600000 0.000000 0.400000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.100000 0.900000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAACTTTYACTTTTGGTGCATAAATTTYCTT MEME-7 regular expression -------------------------------------------------------------------------------- [CT][AG]A[CA]TTT[TC]AC[TA]TTT[GC][GT]TGCATAAATT[TC][CT]CTT -------------------------------------------------------------------------------- Time 2174.30 secs. ******************************************************************************** ******************************************************************************** MOTIF SSSBSGCCCSBGHBSCCGCNGCSSCCSYGSS MEME-8 width = 31 sites = 51 llr = 683 E-value = 1.0e-035 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSSBSGCCCSBGHBSCCGCNGCSSCCSYGSS MEME-8 Description -------------------------------------------------------------------------------- Simplified A 12::1:3:111:21121::2111:2211::1 pos.-specific C 6553537763334355617325356755255 probability G 3344461224461433291362541232733 matrix T ::1311:11222321:1:32:2211:13111 bits 2.2 2.0 1.8 * 1.5 * Relative 1.3 * Entropy 1.1 * * * (19.3 bits) 0.9 * *** ** * * 0.7 * * ***** * * ** * *** ** 0.4 ********* * ***** ******* ** 0.2 ******************* *********** 0.0 ------------------------------- Multilevel CCCGCGCCCGGGCGCCCGCCGCGCCCCCGCC consensus GGGTGCA CCCTCGG TGCGCG GTCGG sequence A C T A A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSSBSGCCCSBGHBSCCGCNGCSSCCSYGSS MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr1:112956147-112956647 + 11 7.12e-11 ccctctagct cgcccgcgcgcgccggcgcCCCCTCCCCGCC ACGTGACCGG chr17:45371478-45371978 - 24 5.07e-10 GCAGGGACCC CCTGCGCGGGCGAGCCGGCTGCTGCCCTGCG GGGGACCCAC chr16:1929557-1930057 + 56 5.85e-10 GTCAGGCCCC CCGCCGCGCCTGCGCACGCAGACCACCCGGC CTGGCAGCAC chr11:62832615-62833115 + 16 8.94e-10 ATCAGATATC CCGTCGCCCCAGCTCAGGCAGCCCCCACCCC AAGCTACCCC chr17:38606246-38606746 + 62 1.55e-09 TCTGGGCTCC CCGGCGCCCCCTGCTGGGCCGCCGCCTCGCC CCCGCTCC chr17:37609245-37609745 + 29 2.65e-09 GGCGATGGGG CGGGGCCTCGCGCCCACGTGACTCCCCCGGC CCTCGGGGAG chr9:11167-11667 + 27 3.44e-09 gagtggtggc caccgccccctgctggcgccggggcactgca gggtcctctt chr6:33276898-33277398 - 16 3.91e-09 CCCCTCCCCC GCCTCGCCCCGGCGGCCGGTCTGCCGCCCGC TTCCGCGTTG chr19:34365208-34365708 - 7 6.51e-09 ACCCCAGGCC CGCGTGCCCGGTTCCGGGCGCCGCGCGTGGC AGCCCC chr5:139548980-139549480 + 69 7.37e-09 ggctgcgctt gaggagcccttcagcccgccgctgcactgcg g chr19:39833175-39833675 - 14 9.44e-09 CCTCCTGTCC CGCTTGCCCTCCCCGCCGCGGGGCCGGCCGG GCCAGAGACA chr5:98770393-98770893 + 26 1.21e-08 TCCGAAGTTC AGGGGCCCCCTGATCCCGCTGAGCCCCCTCC AGGAGCGAAA chr11:416972-417472 + 41 1.36e-08 TTCCTGAGAG ACCGCGCCCAGGGACAAGCAGCGCCCCGGGC CCCGACTCCA chr1:1746240-1746740 + 2 1.94e-08 A CCGTGGCCCCACCCCCCGCGGCAGCCCGTTG GTTCCGCCCG chr11:518586-519086 - 59 1.94e-08 CGGCCGGCAG AGGGCGCCCGAGTCCCGGCCTCGCTCGCGCG TTCGGGGCGG chr13:112213450-11221395 + 19 3.89e-08 tcatgtcagt cactgccccctgcaggtgtggggcacctgcc aacaatgacc chr3:48272132-48272632 - 70 4.35e-08 . CCCCGGCCTCAGCGTCCGCTCTGGCCACGCT TGAGGAGCCC chr21:33479522-33480022 - 50 4.87e-08 CGCCAGGCAA CCGTAGAGGGCTCGCGCCCGCCGCCCGCGCG TAAGGAGGCT chr6:32129799-32130299 - 56 4.87e-08 GGTACTTATT GACCCGACCGGGTGTCCGTAGTTGGCGCGGC TACCTTAACC chr16:29748019-29748519 + 44 6.08e-08 ccctgcgctt gaggagcccttcagcccgccgctgcactgtg ggagcccctc chr17:1628913-1629413 + 41 7.56e-08 GGCTCCGGCT CCGCGTCCCGGCCCCCAGCGGACTCCCCCCA GAAGCCGCCG chr17:38415499-38415999 + 53 9.38e-08 CAGGTGCAGG AGTGGGGCCTGCCACCCGCCGCCCCCCTCCT TCCCTCTCAT chr17:36948995-36949495 - 37 1.04e-07 GCCCCACAGG GCCTGGCCCACCGCTCCGCACGTGGCCTGCC CCAGTCCGGC chr16:401746-402246 + 6 1.04e-07 TCCCC GACGGGAGCGCCATGGCCCAGCCGCCGCCCG ACGTGGAGGG chrX:386714-387214 + 25 1.43e-07 CTCCCAAACA AGGGCGCCCGCGTTCACGTCACTGCGTCGCG TCATCGCGAC chr12:12266856-12267356 + 12 1.59e-07 TCCTAGGGTC GCCGCGACCGTGTCCCTGCGCGCAACGAGCC CCTTCTCCCG chr4:189940551-189941051 + 37 1.59e-07 GATGCCTTTT GGCCCTCTGCGGCCGCCGTAGCTCCCCGGCA GAAACCCGGA chr1:243850761-243851261 - 2 2.39e-07 GACTGGAGGA GACGCCCGGGGCCTGGCGGCGCGCGCGTCCG C chr19:36796896-36797396 + 15 2.65e-07 actgcaagct ccgcctcccgggttcacgccattctgcggcc tcagcttccc chr21:46117624-46118124 - 45 2.92e-07 TGGACTCCCT GCTTCCCCCGGGTAACCGTCGGGGCCCTGAG AGAGGAGTGA chr1:225430993-225431493 - 44 3.56e-07 GGCTCCTCAA GAGCGGCCAGAGTGGGCGCCGAGGCCGAGGA GGTGCAGAGA chr7:148781-149281 + 58 4.33e-07 AGAACACGGT CAGGCCCGCAGGAGACGCCGCGGCACCTGCC AGAAAGAGAG chr7:141738002-141738502 + 57 6.35e-07 CTTCAGAGTT AAGGGGAGCCGTTTCCCGCAGCGCTAGCCGG CAGTATTTCC chr6:30914176-30914676 + 53 6.35e-07 GGAAGGCTTG GCCGCGCCGGGCTGTGGGCACTGCAGGAGGC CCCTGTGCAG chr16:29804865-29805365 - 45 6.97e-07 CCCCGTTATG CCCTCCACGCGTTCCAGGTCCTCCACCTGGC GGGACAGGAT chr6:31665045-31665545 + 2 6.97e-07 C CCTTCGCCTTCCTCAACGTGGCCCCCGCTCC AAGCCCATTT chr19:1259901-1260401 + 56 6.97e-07 CTCTAGGGGC CCCAGTACCGGGAGCCCCCAGGGGAAGGGGC ACAGGTTCAG chr17:996793-997293 - 14 1.11e-06 ACGGCAGATT CGCCGCAGGAGGAAGCCGCGGCCGCAACGCT CCTGGTGCGC chr19:1267463-1267963 + 58 1.32e-06 GGCCTGAATT GCTCCCAGGCTGGGCATGTGGCGCCCGCGTC TGGGGCTCCA chr6:28795720-28796220 + 64 2.24e-06 ggggatcgaa cccaggacctcgtgcatgctaagcacgcgct ctacca chrX:1418143-1418643 - 48 2.24e-06 GCCCCCTACA CGTGGCCCAGAGTGGCTGCTGTAGCACCGGC CATTGTGTCT chr1:16896431-16896931 + 42 2.24e-06 GTAGgggaac ggctctgccggcccccaggtgccctcgcgca tattcatgga chr19:34254010-34254510 + 9 2.65e-06 agcactac ccgttcctgcagtgcccgtcggggcctggca tctaggaaac chr19:39409794-39410294 - 64 2.89e-06 TACCCA CACGCCCTGGCCTCGCGGGGCCGACCCTGGT CGGTGTGCGA chr17:45584560-45585060 + 66 6.02e-06 CGACCCACCT GCCCGGGCTGCTACCGCGTTGCCGCGAGCGG AACC chr6:31734525-31735025 - 1 6.02e-06 CTCTGTAGGG CCCTCCACATCTCTAGCGCGAGGCCCAGGGC chr7:5350639-5351139 + 6 6.51e-06 CGATG CTCCGTCCCTTGATGCGGCAACGGAGCCGCT TTCGTATTGA chr14:98909168-98909668 - 11 8.22e-06 GACTTGTCCA AAGTCGCCTATGAGTCAGCCGTGGCACTCCG ACTGTGATGT chr12:104664-105164 - 69 8.22e-06 A CGTGAGGCCGCGGCGCCCCAGCCCAGCTGTT TGAAGACGTA chr12:125259410-12525991 + 28 1.11e-05 TAATTAATCC CCGGGGACTCGTCGGCAGTGGCATCCCACTC ATTACTTACG chr5:181169387-181169887 - 45 1.61e-05 CGGTTTCGAA CCGGGGACCTTTCGCGTGTTAGGCGAACGTG ATAACCACTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSSBSGCCCSBGHBSCCGCNGCSSCCSYGSS MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:112956147-112956647 7.1e-11 10_[+8]_59 chr17:45371478-45371978 5.1e-10 23_[-8]_46 chr16:1929557-1930057 5.9e-10 55_[+8]_14 chr11:62832615-62833115 8.9e-10 15_[+8]_54 chr17:38606246-38606746 1.5e-09 61_[+8]_8 chr17:37609245-37609745 2.6e-09 28_[+8]_41 chr9:11167-11667 3.4e-09 26_[+8]_43 chr6:33276898-33277398 3.9e-09 15_[-8]_54 chr19:34365208-34365708 6.5e-09 6_[-8]_63 chr5:139548980-139549480 7.4e-09 68_[+8]_1 chr19:39833175-39833675 9.4e-09 13_[-8]_56 chr5:98770393-98770893 1.2e-08 25_[+8]_44 chr11:416972-417472 1.4e-08 40_[+8]_29 chr1:1746240-1746740 1.9e-08 1_[+8]_68 chr11:518586-519086 1.9e-08 58_[-8]_11 chr13:112213450-11221395 3.9e-08 18_[+8]_51 chr3:48272132-48272632 4.4e-08 69_[-8] chr21:33479522-33480022 4.9e-08 49_[-8]_20 chr6:32129799-32130299 4.9e-08 55_[-8]_14 chr16:29748019-29748519 6.1e-08 43_[+8]_26 chr17:1628913-1629413 7.6e-08 40_[+8]_29 chr17:38415499-38415999 9.4e-08 52_[+8]_17 chr17:36948995-36949495 1e-07 36_[-8]_33 chr16:401746-402246 1e-07 5_[+8]_64 chrX:386714-387214 1.4e-07 24_[+8]_45 chr12:12266856-12267356 1.6e-07 11_[+8]_58 chr4:189940551-189941051 1.6e-07 36_[+8]_33 chr1:243850761-243851261 2.4e-07 1_[-8]_68 chr19:36796896-36797396 2.6e-07 14_[+8]_55 chr21:46117624-46118124 2.9e-07 44_[-8]_25 chr1:225430993-225431493 3.6e-07 43_[-8]_26 chr7:148781-149281 4.3e-07 57_[+8]_12 chr7:141738002-141738502 6.3e-07 56_[+8]_13 chr6:30914176-30914676 6.3e-07 52_[+8]_17 chr16:29804865-29805365 7e-07 44_[-8]_25 chr6:31665045-31665545 7e-07 1_[+8]_68 chr19:1259901-1260401 7e-07 55_[+8]_14 chr17:996793-997293 1.1e-06 13_[-8]_56 chr19:1267463-1267963 1.3e-06 57_[+8]_12 chr6:28795720-28796220 2.2e-06 63_[+8]_6 chrX:1418143-1418643 2.2e-06 47_[-8]_22 chr1:16896431-16896931 2.2e-06 41_[+8]_28 chr19:34254010-34254510 2.7e-06 8_[+8]_61 chr19:39409794-39410294 2.9e-06 63_[-8]_6 chr17:45584560-45585060 6e-06 65_[+8]_4 chr6:31734525-31735025 6e-06 [-8]_69 chr7:5350639-5351139 6.5e-06 5_[+8]_64 chr14:98909168-98909668 8.2e-06 10_[-8]_59 chr12:104664-105164 8.2e-06 68_[-8]_1 chr12:125259410-12525991 1.1e-05 27_[+8]_42 chr5:181169387-181169887 1.6e-05 44_[-8]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSSBSGCCCSBGHBSCCGCNGCSSCCSYGSS MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSSBSGCCCSBGHBSCCGCNGCSSCCSYGSS width=31 seqs=51 chr1:112956147-112956647 ( 11) CGCCCGCGCGCGCCGGCGCCCCCTCCCCGCC 1 chr17:45371478-45371978 ( 24) CCTGCGCGGGCGAGCCGGCTGCTGCCCTGCG 1 chr16:1929557-1930057 ( 56) CCGCCGCGCCTGCGCACGCAGACCACCCGGC 1 chr11:62832615-62833115 ( 16) CCGTCGCCCCAGCTCAGGCAGCCCCCACCCC 1 chr17:38606246-38606746 ( 62) CCGGCGCCCCCTGCTGGGCCGCCGCCTCGCC 1 chr17:37609245-37609745 ( 29) CGGGGCCTCGCGCCCACGTGACTCCCCCGGC 1 chr9:11167-11667 ( 27) CACCGCCCCCTGCTGGCGCCGGGGCACTGCA 1 chr6:33276898-33277398 ( 16) GCCTCGCCCCGGCGGCCGGTCTGCCGCCCGC 1 chr19:34365208-34365708 ( 7) CGCGTGCCCGGTTCCGGGCGCCGCGCGTGGC 1 chr5:139548980-139549480 ( 69) GAGGAGCCCTTCAGCCCGCCGCTGCACTGCG 1 chr19:39833175-39833675 ( 14) CGCTTGCCCTCCCCGCCGCGGGGCCGGCCGG 1 chr5:98770393-98770893 ( 26) AGGGGCCCCCTGATCCCGCTGAGCCCCCTCC 1 chr11:416972-417472 ( 41) ACCGCGCCCAGGGACAAGCAGCGCCCCGGGC 1 chr1:1746240-1746740 ( 2) CCGTGGCCCCACCCCCCGCGGCAGCCCGTTG 1 chr11:518586-519086 ( 59) AGGGCGCCCGAGTCCCGGCCTCGCTCGCGCG 1 chr13:112213450-11221395 ( 19) CACTGCCCCCTGCAGGTGTGGGGCACCTGCC 1 chr3:48272132-48272632 ( 70) CCCCGGCCTCAGCGTCCGCTCTGGCCACGCT 1 chr21:33479522-33480022 ( 50) CCGTAGAGGGCTCGCGCCCGCCGCCCGCGCG 1 chr6:32129799-32130299 ( 56) GACCCGACCGGGTGTCCGTAGTTGGCGCGGC 1 chr16:29748019-29748519 ( 44) GAGGAGCCCTTCAGCCCGCCGCTGCACTGTG 1 chr17:1628913-1629413 ( 41) CCGCGTCCCGGCCCCCAGCGGACTCCCCCCA 1 chr17:38415499-38415999 ( 53) AGTGGGGCCTGCCACCCGCCGCCCCCCTCCT 1 chr17:36948995-36949495 ( 37) GCCTGGCCCACCGCTCCGCACGTGGCCTGCC 1 chr16:401746-402246 ( 6) GACGGGAGCGCCATGGCCCAGCCGCCGCCCG 1 chrX:386714-387214 ( 25) AGGGCGCCCGCGTTCACGTCACTGCGTCGCG 1 chr12:12266856-12267356 ( 12) GCCGCGACCGTGTCCCTGCGCGCAACGAGCC 1 chr4:189940551-189941051 ( 37) GGCCCTCTGCGGCCGCCGTAGCTCCCCGGCA 1 chr1:243850761-243851261 ( 2) GACGCCCGGGGCCTGGCGGCGCGCGCGTCCG 1 chr19:36796896-36797396 ( 15) CCGCCTCCCGGGTTCACGCCATTCTGCGGCC 1 chr21:46117624-46118124 ( 45) GCTTCCCCCGGGTAACCGTCGGGGCCCTGAG 1 chr1:225430993-225431493 ( 44) GAGCGGCCAGAGTGGGCGCCGAGGCCGAGGA 1 chr7:148781-149281 ( 58) CAGGCCCGCAGGAGACGCCGCGGCACCTGCC 1 chr7:141738002-141738502 ( 57) AAGGGGAGCCGTTTCCCGCAGCGCTAGCCGG 1 chr6:30914176-30914676 ( 53) GCCGCGCCGGGCTGTGGGCACTGCAGGAGGC 1 chr16:29804865-29805365 ( 45) CCCTCCACGCGTTCCAGGTCCTCCACCTGGC 1 chr6:31665045-31665545 ( 2) CCTTCGCCTTCCTCAACGTGGCCCCCGCTCC 1 chr19:1259901-1260401 ( 56) CCCAGTACCGGGAGCCCCCAGGGGAAGGGGC 1 chr17:996793-997293 ( 14) CGCCGCAGGAGGAAGCCGCGGCCGCAACGCT 1 chr19:1267463-1267963 ( 58) GCTCCCAGGCTGGGCATGTGGCGCCCGCGTC 1 chr6:28795720-28796220 ( 64) CCCAGGACCTCGTGCATGCTAAGCACGCGCT 1 chrX:1418143-1418643 ( 48) CGTGGCCCAGAGTGGCTGCTGTAGCACCGGC 1 chr1:16896431-16896931 ( 42) GGCTCTGCCGGCCCCCAGGTGCCCTCGCGCA 1 chr19:34254010-34254510 ( 9) CCGTTCCTGCAGTGCCCGTCGGGGCCTGGCA 1 chr19:39409794-39410294 ( 64) CACGCCCTGGCCTCGCGGGGCCGACCCTGGT 1 chr17:45584560-45585060 ( 66) GCCCGGGCTGCTACCGCGTTGCCGCGAGCGG 1 chr6:31734525-31735025 ( 1) CCCTCCACATCTCTAGCGCGAGGCCCAGGGC 1 chr7:5350639-5351139 ( 6) CTCCGTCCCTTGATGCGGCAACGGAGCCGCT 1 chr14:98909168-98909668 ( 11) AAGTCGCCTATGAGTCAGCCGTGGCACTCCG 1 chr12:104664-105164 ( 69) CGTGAGGCCGCGGCGCCCCAGCCCAGCTGTT 1 chr12:125259410-12525991 ( 28) CCGGGGACTCGTCGGCAGTGGCATCCCACTC 1 chr5:181169387-181169887 ( 45) CCGGGGACCTTTCGCGTGTTAGGCGAACGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSSBSGCCCSBGHBSCCGCNGCSSCCSYGSS MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 41790 bayes= 11.7897 E= 1.0e-035 -105 140 45 -1232 -27 118 24 -385 -1232 112 86 -105 -286 24 100 -5 -186 112 86 -227 -1232 35 149 -127 -16 163 -146 -1232 -1232 175 -14 -186 -227 158 -14 -153 -153 45 100 -69 -105 45 71 -40 -1232 24 140 -69 -40 79 -114 14 -153 63 79 -54 -186 124 45 -127 -54 135 24 -1232 -153 145 -14 -127 -1232 -114 206 -1232 -1232 163 -146 -16 -27 45 45 -69 -105 0 154 -385 -153 129 0 -86 -227 35 118 -69 -286 124 86 -227 -54 154 -114 -186 -69 163 -46 -1232 -127 124 54 -227 -186 112 -46 5 -1232 0 175 -227 -385 135 54 -127 -127 106 45 -105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSSBSGCCCSBGHBSCCGCNGCSSCCSYGSS MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 51 E= 1.0e-035 0.137255 0.568627 0.294118 0.000000 0.235294 0.490196 0.254902 0.019608 0.000000 0.470588 0.392157 0.137255 0.039216 0.254902 0.431373 0.274510 0.078431 0.470588 0.392157 0.058824 0.000000 0.274510 0.607843 0.117647 0.254902 0.666667 0.078431 0.000000 0.000000 0.725490 0.196078 0.078431 0.058824 0.647059 0.196078 0.098039 0.098039 0.294118 0.431373 0.176471 0.137255 0.294118 0.352941 0.215686 0.000000 0.254902 0.568627 0.176471 0.215686 0.372549 0.098039 0.313725 0.098039 0.333333 0.372549 0.196078 0.078431 0.509804 0.294118 0.117647 0.196078 0.549020 0.254902 0.000000 0.098039 0.588235 0.196078 0.117647 0.000000 0.098039 0.901961 0.000000 0.000000 0.666667 0.078431 0.254902 0.235294 0.294118 0.294118 0.176471 0.137255 0.215686 0.627451 0.019608 0.098039 0.529412 0.215686 0.156863 0.058824 0.274510 0.490196 0.176471 0.039216 0.509804 0.392157 0.058824 0.196078 0.627451 0.098039 0.078431 0.176471 0.666667 0.156863 0.000000 0.117647 0.509804 0.313725 0.058824 0.078431 0.470588 0.156863 0.294118 0.000000 0.215686 0.725490 0.058824 0.019608 0.549020 0.313725 0.117647 0.117647 0.450980 0.294118 0.137255 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSSBSGCCCSBGHBSCCGCNGCSSCCSYGSS MEME-8 regular expression -------------------------------------------------------------------------------- [CG][CGA][CG][GTC][CG][GC][CA]CC[GC][GCT][GC][CTA][GC][CG][CG]CG[CT][CGA][GC][CG][GC][CG]CC[CG][CT][GC][CG][CG] -------------------------------------------------------------------------------- Time 2456.94 secs. ******************************************************************************** ******************************************************************************** MOTIF CATAAAAACTAVACAGAAGCATTCTSAGRAACTTCTTTGTGATGTKTGYA MEME-9 width = 50 sites = 9 llr = 431 E-value = 1.9e-062 ******************************************************************************** -------------------------------------------------------------------------------- Motif CATAAAAACTAVACAGAAGCATTCTSAGRAACTTCTTTGTGATGTKTGYA MEME-9 Description -------------------------------------------------------------------------------- Simplified A 18187a87:2a2a:9:a9:19:::::a:6a91:1:::::::9:12:::18 pos.-specific C 811::::18::2:9:::::9:::a:7::::191:91:1::::::21:161 probability G ::1:1::21::4:::a::9::::::3:a3::::1:1:1a1a:19:3:9:1 matrix T 11722:2:18:1:11::11:1aa:a:::1:::9818a8:9:19:66a:3: bits 2.2 * * * * * 2.0 * * * * * 1.8 * * ** ** ** **** ** * * * * * * * ** 1.5 * * ** ** ** **** ** * * * * * * * ** Relative 1.3 * * **************** **** * * ****** ** Entropy 1.1 * * ** *** **************** **** * * ****** ** (69.1 bits) 0.9 ** * ** *** **************** *************** ** * 0.7 ** ******** ******************************** ***** 0.4 *********** ************************************** 0.2 ************************************************** 0.0 -------------------------------------------------- Multilevel CATAAAAACTAGACAGAAGCATTCTCAGAAACTTCTTTGTGATGTTTGCA consensus TT TG A A G G AG T sequence C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATAAAAACTAVACAGAAGCATTCTSAGRAACTTCTTTGTGATGTKTGYA MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------------------------------- chr17:26619785-26620285 + 20 2.65e-26 agaatcttca cagaaaagctaaacagaagcattctcagaaacttctttgtgatgcttgca ttcaactcac chr20:28842236-28842736 + 17 4.11e-25 aatgtcttca cataaaaactacactgaagcattctgagaaactactttgtgatgtgtgca ttcatctcac chrUn_KI270587v1:1046-15 - 9 6.61e-25 AATATCTTCA CATAAAAACTACACAGAAGCATTCTGAGGAACTTCTTTGTGAGATGTGCA CTCATCTC chr17:26885531-26886031 - 11 8.13e-24 AATATCTTCA CCTAAATACTAGATAGAAGCATTCTCAGAAACTGCTTTGTGATGATTGCA TTCACCTAAC chr17:26603652-26604152 + 46 2.40e-23 atcatcttca cataaaaactatacagatgcattctcaggaactttttggtgatgtttgta ttcaa chr13:16136749-16137249 + 3 3.62e-22 cc catttaaactagacagaagcattctgaggaacttcgttgtgatgcctctc cattcatcgg chr17:25074229-25074729 + 34 3.92e-21 ggataaaccg cacagaactaaaacagaagcattctcagaaccctcttcgtgatgtttgca ttcaactcac chr17:25919962-25920462 + 27 1.99e-20 aataacttcc tataaaaagaagacagaagctttctcagaaaattctttgggatgattgag ttgaactcac chr1:124050427-124050927 + 38 7.70e-19 gggattcttc atattatgctagacagaataattctcagtaacttccttgtgttgtgtgta ttcaactcac -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATAAAAACTAVACAGAAGCATTCTSAGRAACTTCTTTGTGATGTKTGYA MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:26619785-26620285 2.7e-26 19_[+9]_31 chr20:28842236-28842736 4.1e-25 16_[+9]_34 chrUn_KI270587v1:1046-15 6.6e-25 8_[-9]_42 chr17:26885531-26886031 8.1e-24 10_[-9]_40 chr17:26603652-26604152 2.4e-23 45_[+9]_5 chr13:16136749-16137249 3.6e-22 2_[+9]_48 chr17:25074229-25074729 3.9e-21 33_[+9]_17 chr17:25919962-25920462 2e-20 26_[+9]_24 chr1:124050427-124050927 7.7e-19 37_[+9]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATAAAAACTAVACAGAAGCATTCTSAGRAACTTCTTTGTGATGTKTGYA MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CATAAAAACTAVACAGAAGCATTCTSAGRAACTTCTTTGTGATGTKTGYA width=50 seqs=9 chr17:26619785-26620285 ( 20) CAGAAAAGCTAAACAGAAGCATTCTCAGAAACTTCTTTGTGATGCTTGCA 1 chr20:28842236-28842736 ( 17) CATAAAAACTACACTGAAGCATTCTGAGAAACTACTTTGTGATGTGTGCA 1 chrUn_KI270587v1:1046-15 ( 9) CATAAAAACTACACAGAAGCATTCTGAGGAACTTCTTTGTGAGATGTGCA 1 chr17:26885531-26886031 ( 11) CCTAAATACTAGATAGAAGCATTCTCAGAAACTGCTTTGTGATGATTGCA 1 chr17:26603652-26604152 ( 46) CATAAAAACTATACAGATGCATTCTCAGGAACTTTTTGGTGATGTTTGTA 1 chr13:16136749-16137249 ( 3) CATTTAAACTAGACAGAAGCATTCTGAGGAACTTCGTTGTGATGCCTCTC 1 chr17:25074229-25074729 ( 34) CACAGAACTAAAACAGAAGCATTCTCAGAACCCTCTTCGTGATGTTTGCA 1 chr17:25919962-25920462 ( 27) TATAAAAAGAAGACAGAAGCTTTCTCAGAAAATTCTTTGGGATGATTGAG 1 chr1:124050427-124050927 ( 38) ATATTATGCTAGACAGAATAATTCTCAGTAACTTCCTTGTGTTGTGTGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATAAAAACTAVACAGAAGCATTCTSAGRAACTTCTTTGTGATGTKTGYA MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 50 n= 30447 bayes= 11.0254 E= 1.9e-062 -135 185 -982 -135 145 -96 -982 -135 -135 -96 -96 123 145 -982 -982 -35 123 -982 -96 -35 181 -982 -982 -982 145 -982 -982 -35 123 -96 4 -982 -982 185 -96 -135 -35 -982 -982 145 181 -982 -982 -982 -35 4 104 -135 181 -982 -982 -982 -982 204 -982 -135 164 -982 -982 -135 -982 -982 221 -982 181 -982 -982 -982 164 -982 -982 -135 -982 -982 204 -135 -135 204 -982 -982 164 -982 -982 -135 -982 -982 -982 181 -982 -982 -982 181 -982 221 -982 -982 -982 -982 -982 181 -982 163 63 -982 181 -982 -982 -982 -982 -982 221 -982 97 -982 63 -135 181 -982 -982 -982 164 -96 -982 -982 -135 204 -982 -982 -982 -96 -982 164 -135 -982 -96 145 -982 204 -982 -135 -982 -96 -96 145 -982 -982 -982 181 -982 -96 -96 145 -982 -982 221 -982 -982 -982 -96 164 -982 -982 221 -982 164 -982 -982 -135 -982 -982 -96 164 -135 -982 204 -982 -35 4 -982 97 -982 -96 63 97 -982 -982 -982 181 -982 -96 204 -982 -135 136 -982 23 145 -96 -96 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATAAAAACTAVACAGAAGCATTCTSAGRAACTTCTTTGTGATGTKTGYA MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 50 nsites= 9 E= 1.9e-062 0.111111 0.777778 0.000000 0.111111 0.777778 0.111111 0.000000 0.111111 0.111111 0.111111 0.111111 0.666667 0.777778 0.000000 0.000000 0.222222 0.666667 0.000000 0.111111 0.222222 1.000000 0.000000 0.000000 0.000000 0.777778 0.000000 0.000000 0.222222 0.666667 0.111111 0.222222 0.000000 0.000000 0.777778 0.111111 0.111111 0.222222 0.000000 0.000000 0.777778 1.000000 0.000000 0.000000 0.000000 0.222222 0.222222 0.444444 0.111111 1.000000 0.000000 0.000000 0.000000 0.000000 0.888889 0.000000 0.111111 0.888889 0.000000 0.000000 0.111111 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.888889 0.000000 0.000000 0.111111 0.000000 0.000000 0.888889 0.111111 0.111111 0.888889 0.000000 0.000000 0.888889 0.000000 0.000000 0.111111 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.555556 0.000000 0.333333 0.111111 1.000000 0.000000 0.000000 0.000000 0.888889 0.111111 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 0.000000 0.111111 0.000000 0.888889 0.111111 0.000000 0.111111 0.777778 0.000000 0.888889 0.000000 0.111111 0.000000 0.111111 0.111111 0.777778 0.000000 0.000000 0.000000 1.000000 0.000000 0.111111 0.111111 0.777778 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 1.000000 0.000000 0.888889 0.000000 0.000000 0.111111 0.000000 0.000000 0.111111 0.888889 0.111111 0.000000 0.888889 0.000000 0.222222 0.222222 0.000000 0.555556 0.000000 0.111111 0.333333 0.555556 0.000000 0.000000 0.000000 1.000000 0.000000 0.111111 0.888889 0.000000 0.111111 0.555556 0.000000 0.333333 0.777778 0.111111 0.111111 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATAAAAACTAVACAGAAGCATTCTSAGRAACTTCTTTGTGATGTKTGYA MEME-9 regular expression -------------------------------------------------------------------------------- CAT[AT][AT]A[AT][AG]C[TA]A[GAC]ACAGAAGCATTCT[CG]AG[AG]AACTTCTTTGTGATG[TAC][TG]TG[CT]A -------------------------------------------------------------------------------- Time 2713.21 secs. ******************************************************************************** ******************************************************************************** MOTIF GGRRGKYYYWWAAATGGCCRCTCTGGGAGTG MEME-10 width = 31 sites = 11 llr = 368 E-value = 4.2e-056 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGRRGKYYYWWAAATGGCCRCTCTGGGAGTG MEME-10 Description -------------------------------------------------------------------------------- Simplified A :255:::::55aaa1::::4::::::29111 pos.-specific C :::::1555::::::::98:a:9::::::1: probability G a855a5:::::::::aa::6::::aa819:9 matrix T :::::555555:::9::12::a1a:::::8: bits 2.2 * * ** * ** 2.0 * * ** * ** 1.8 * * *** *** ****** * * 1.5 ** * *** **** ******* * * Relative 1.3 ** * ******** ********* * Entropy 1.1 ***** *** ****************** * (48.2 bits) 0.9 ***** ************************* 0.7 ******************************* 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel GGAGGGCTCTAAAATGGCCGCTCTGGGAGTG consensus GA TTCTAT A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRRGKYYYWWAAATGGCCRCTCTGGGAGTG MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr12:56653730-56654230 + 7 1.20e-18 ccaggg ggaggtctctaaaatggccgctctgggagtg tgtgtcttat chr6:33101112-33101612 - 57 1.60e-17 CATTCCCGGG GGAGGTCTCTAAAATGGCCACTCTGGGAGTG TCTGAATTAC chr1:84287354-84287854 + 2 1.60e-17 g ggaggtctctaaaatggccactctgggagtg tctgtcttat chr1:32458760-32459260 + 5 2.64e-17 tggg gggaggtctataaatggccgctctgggagtg tctgtcttat chr13:52309838-52310338 - 67 2.63e-16 AGG GAGAGGTCTATAAATGGCCGCTCTGGGAGTG TCTGTCTTAC chr14:22344174-22344674 - 70 3.23e-16 . GGAGGCCTCTAAAATGGCTGCTCTGGGAGTG TCTGTCTTAT chr3:197967533-197968033 - 54 6.18e-16 CATTCCTTGG GGGAGGTCTATAAATGGCCACTCTGGAAGTG TCTGTCTTAT chr1:225006299-225006799 + 1 1.04e-15 . gaaggtctctaaaatggccactctggaagtg tctgtctatt chr16:3205886-3206386 + 22 1.98e-15 cactcctcgg gggaggtctataaatggctgctctgggagag tctgtcttat chr11:9451971-9452471 - 46 2.01e-14 CATTCCTGGG GGGAGGTCTATAAAAGGTCGCTTTGGGAGTG TCTGTCTTAT chr1:203234830-203235330 + 32 2.51e-14 attcctaggg ggaggtctctaaaatggccgctctggggaca tctgtctttt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRRGKYYYWWAAATGGCCRCTCTGGGAGTG MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:56653730-56654230 1.2e-18 6_[+10]_63 chr6:33101112-33101612 1.6e-17 56_[-10]_13 chr1:84287354-84287854 1.6e-17 1_[+10]_68 chr1:32458760-32459260 2.6e-17 4_[+10]_65 chr13:52309838-52310338 2.6e-16 66_[-10]_3 chr14:22344174-22344674 3.2e-16 69_[-10] chr3:197967533-197968033 6.2e-16 53_[-10]_16 chr1:225006299-225006799 1e-15 [+10]_69 chr16:3205886-3206386 2e-15 21_[+10]_48 chr11:9451971-9452471 2e-14 45_[-10]_24 chr1:203234830-203235330 2.5e-14 31_[+10]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRRGKYYYWWAAATGGCCRCTCTGGGAGTG MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGRRGKYYYWWAAATGGCCRCTCTGGGAGTG width=31 seqs=11 chr12:56653730-56654230 ( 7) GGAGGTCTCTAAAATGGCCGCTCTGGGAGTG 1 chr6:33101112-33101612 ( 57) GGAGGTCTCTAAAATGGCCACTCTGGGAGTG 1 chr1:84287354-84287854 ( 2) GGAGGTCTCTAAAATGGCCACTCTGGGAGTG 1 chr1:32458760-32459260 ( 5) GGGAGGTCTATAAATGGCCGCTCTGGGAGTG 1 chr13:52309838-52310338 ( 67) GAGAGGTCTATAAATGGCCGCTCTGGGAGTG 1 chr14:22344174-22344674 ( 70) GGAGGCCTCTAAAATGGCTGCTCTGGGAGTG 1 chr3:197967533-197968033 ( 54) GGGAGGTCTATAAATGGCCACTCTGGAAGTG 1 chr1:225006299-225006799 ( 1) GAAGGTCTCTAAAATGGCCACTCTGGAAGTG 1 chr16:3205886-3206386 ( 22) GGGAGGTCTATAAATGGCTGCTCTGGGAGAG 1 chr11:9451971-9452471 ( 46) GGGAGGTCTATAAAAGGTCGCTTTGGGAGTG 1 chr1:203234830-203235330 ( 32) GGAGGTCTCTAAAATGGCCGCTCTGGGGACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRRGKYYYWWAAATGGCCRCTCTGGGAGTG MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 41790 bayes= 12.9177 E= 4.2e-056 -1010 -1010 221 -1010 -64 -1010 192 -1010 94 -1010 107 -1010 68 -1010 134 -1010 -1010 -1010 221 -1010 -1010 -125 107 68 -1010 134 -1010 68 -1010 107 -1010 94 -1010 134 -1010 68 68 -1010 -1010 94 94 -1010 -1010 68 181 -1010 -1010 -1010 181 -1010 -1010 -1010 181 -1010 -1010 -1010 -164 -1010 -1010 168 -1010 -1010 221 -1010 -1010 -1010 221 -1010 -1010 207 -1010 -164 -1010 192 -1010 -64 36 -1010 156 -1010 -1010 221 -1010 -1010 -1010 -1010 -1010 181 -1010 207 -1010 -164 -1010 -1010 -1010 181 -1010 -1010 221 -1010 -1010 -1010 221 -1010 -64 -1010 192 -1010 168 -1010 -125 -1010 -164 -1010 207 -1010 -164 -125 -1010 152 -164 -1010 207 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRRGKYYYWWAAATGGCCRCTCTGGGAGTG MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 11 E= 4.2e-056 0.000000 0.000000 1.000000 0.000000 0.181818 0.000000 0.818182 0.000000 0.545455 0.000000 0.454545 0.000000 0.454545 0.000000 0.545455 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.090909 0.454545 0.454545 0.000000 0.545455 0.000000 0.454545 0.000000 0.454545 0.000000 0.545455 0.000000 0.545455 0.000000 0.454545 0.454545 0.000000 0.000000 0.545455 0.545455 0.000000 0.000000 0.454545 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.090909 0.000000 0.000000 0.909091 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.909091 0.000000 0.090909 0.000000 0.818182 0.000000 0.181818 0.363636 0.000000 0.636364 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.909091 0.000000 0.090909 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.181818 0.000000 0.818182 0.000000 0.909091 0.000000 0.090909 0.000000 0.090909 0.000000 0.909091 0.000000 0.090909 0.090909 0.000000 0.818182 0.090909 0.000000 0.909091 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRRGKYYYWWAAATGGCCRCTCTGGGAGTG MEME-10 regular expression -------------------------------------------------------------------------------- GG[AG][GA]G[GT][CT][TC][CT][TA][AT]AAATGGCC[GA]CTCTGGGAGTG -------------------------------------------------------------------------------- Time 2972.24 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:996793-997293 7.63e-02 13_[-8(1.11e-06)]_56 chr1:38591928-38592428 1.01e-06 38_[-1(8.53e-08)]_40 chr3:170338717-170339217 1.15e-15 14_[+7(6.06e-14)]_1_[+3(4.51e-14)]_\ 23 chr13:17742611-17743111 9.90e-03 53_[-5(1.84e-05)]_31 chr6:31734525-31735025 1.71e-01 [-8(6.02e-06)]_69 chr18:11358790-11359290 1.14e-10 11_[+2(1.62e-11)]_[+5(2.85e-08)]_51 chr3:194091014-194091514 1.09e-01 100 chr3:133792063-133792563 1.82e-11 47_[-3(1.23e-18)]_22 chr1:202234378-202234878 2.93e-01 100 chr5:116545918-116546418 7.63e-01 100 chr1:33064215-33064715 2.31e-01 100 chr12:52761099-52761599 1.69e-18 47_[+4(3.41e-28)]_3 chr9:89857773-89858273 1.80e-14 8_[+1(1.65e-07)]_[+2(1.38e-13)]_\ [+5(4.54e-09)]_32 chr12:104664-105164 4.22e-02 68_[-8(8.22e-06)]_1 chr7:118109532-118110032 8.06e-01 100 chr19:434036-434536 9.55e-01 100 chr6:30060902-30061402 9.34e-01 100 chr11:10045599-10046099 4.54e-14 30_[+1(5.21e-13)]_[+2(2.44e-08)]_\ [+5(1.06e-07)]_10 chr6:31263427-31263927 1.12e-06 31_[+4(3.25e-14)]_19 chrX:2418023-2418523 4.38e-01 100 chr6:137188805-137189305 4.07e-09 34_[+3(1.00e-16)]_35 chr7:148781-149281 4.12e-02 57_[+8(4.33e-07)]_12 chr19:36600289-36600789 9.68e-01 100 chr15:78302391-78302891 3.53e-02 39_[+3(2.77e-05)]_30 chr1:22440872-22441372 4.70e-07 5_[-2(1.39e-09)]_[-1(1.03e-07)]_51 chr19:39833175-39833675 5.41e-02 13_[-8(9.44e-09)]_24_[-8(5.80e-05)]_\ 1 chr9:94267256-94267756 2.32e-02 52_[+5(1.52e-06)]_32 chr16:15607873-15608373 5.62e-01 100 chr1:9095743-9096243 4.55e-01 100 chr16:29748019-29748519 2.27e-03 [+6(5.79e-06)]_[+8(6.08e-08)]_26 chr19:40804670-40805170 8.65e-01 100 chr12:75177873-75178373 4.33e-01 100 chr19:43752962-43753462 3.19e-02 26_[+10(2.63e-05)]_43 chr6:28941366-28941866 6.09e-01 100 chr10:27505043-27505543 2.62e-01 100 chr8:85769372-85769872 1.80e-01 100 chr6:30616784-30617284 2.08e-02 8_[+5(9.33e-05)]_76 chr14:24425659-24426159 6.37e-01 100 chr16:67395540-67396040 5.33e-02 59_[+1(3.37e-05)]_19 chr6:34159805-34160305 2.09e-01 100 chr1:223504220-223504720 6.33e-01 100 chr12:113501885-11350238 3.68e-05 50_[+1(1.14e-07)]_[+2(3.44e-08)]_6 chr3:11688057-11688557 6.68e-01 100 chr6:31366444-31366944 3.14e-01 4_[-6(9.39e-05)]_53 chr15:69760817-69761317 1.43e-01 100 chr3:193248749-193249249 7.77e-02 100 chr1:143266196-143266696 1.00e+00 100 chr1:82625590-82626090 8.31e-02 25_[-5(2.53e-06)]_59 chr5:41747186-41747686 1.95e-01 100 chr7:65558564-65559064 2.60e-01 100 chr19:36418772-36419272 3.97e-01 100 chr5:96078628-96079128 5.80e-01 100 chr1:183025705-183026205 9.84e-01 100 chr6:33271574-33272074 3.42e-01 1_[+5(5.15e-05)]_83 chr17:38800220-38800720 1.05e-01 21_[+5(8.41e-05)]_63 chr5:142325363-142325863 1.05e-01 100 chr7:131336848-131337348 5.22e-01 100 chr1:219324919-219325419 1.77e-01 100 chr11:518586-519086 7.58e-02 5_[+8(6.35e-07)]_22_[-8(1.94e-08)]_\ 11 chr5:157280981-157281481 8.05e-02 13_[-1(7.85e-05)]_65 chr6:109384263-109384763 3.22e-01 100 chr15:83073315-83073815 6.16e-01 100 chr16:3317284-3317784 3.15e-01 50_[+10(6.39e-05)]_19 chr10:95732866-95733366 1.57e-26 3_[+4(2.51e-26)]_4_[-10(3.77e-12)]_\ 12 chr13:50225583-50226083 7.81e-02 51_[-2(1.44e-05)]_27 chr17:37609245-37609745 4.51e-02 28_[+8(2.65e-09)]_9_[+8(2.89e-06)]_\ 1 chr19:36799167-36799667 6.53e-01 100 chr15:74396926-74397426 4.53e-01 100 chr1:1746240-1746740 5.11e-02 1_[+8(1.94e-08)]_10_[-8(1.29e-05)]_\ 27 chr15:92803407-92803907 6.34e-01 100 chr5:176261660-176262160 7.41e-05 6_[+2(3.56e-05)]_[+5(1.06e-07)]_56 chr22:23892109-23892609 3.00e-02 100 chr19:17450227-17450727 5.11e-03 53_[+2(2.17e-05)]_25 chr6:17102336-17102836 1.92e-01 100 chr8:28624921-28625421 2.83e-01 100 chr4:75179405-75179905 5.21e-01 100 chr12:125259410-12525991 3.21e-03 27_[+8(1.11e-05)]_42 chr17:1316835-1317335 1.62e-01 100 chr17:32429497-32429997 5.45e-01 100 chr17:1628913-1629413 2.28e-02 40_[+8(7.56e-08)]_29 chr15:95559933-95560433 5.11e-01 100 chr6:157075358-157075858 8.73e-01 100 chr6:122438962-122439462 2.22e-01 100 chr1:16896431-16896931 1.61e-01 41_[+8(2.24e-06)]_28 chr1:112956147-112956647 6.37e-03 10_[+8(7.12e-11)]_13_[+8(2.46e-08)]_\ 15 chr1:225006299-225006799 1.57e-29 [+10(1.04e-15)]_4_[-4(8.89e-27)]_15 chr19:13848137-13848637 7.88e-01 100 chr3:113857824-113858324 1.12e-07 45_[-5(2.14e-06)]_[-2(8.48e-11)]_17 chr20:28842236-28842736 2.81e-16 16_[+9(4.11e-25)]_34 chr14:100004344-10000484 1.73e-07 36_[+3(1.02e-14)]_33 chr19:29139163-29139663 7.54e-01 100 chr17:38415499-38415999 3.78e-02 52_[+8(9.38e-08)]_17 chr12:12398206-12398706 2.79e-01 100 chr1:229893411-229893911 6.65e-02 100 chr9:108477380-108477880 6.41e-02 100 chr19:34188193-34188693 8.05e-01 100 chr14:106348764-10634926 5.86e-01 100 chr22_KI270733v1_random: 1.09e-01 100 chr7:158108924-158109424 8.00e-01 100 chr17:38606246-38606746 4.98e-03 17_[+8(4.73e-06)]_13_[+8(1.55e-09)]_\ 8 chr16:22727912-22728412 6.78e-01 100 chr6:46649174-46649674 5.48e-03 52_[-7(1.38e-06)]_17 chr1:22993146-22993646 7.69e-10 5_[-3(5.20e-16)]_64 chr3:197564109-197564609 2.48e-01 100 chr15:68760957-68761457 1.99e-14 36_[+1(1.06e-08)]_[+2(7.60e-12)]_\ [+5(4.54e-09)]_4 chr1:26470484-26470984 3.49e-01 43_[+8(1.86e-05)]_26 chrX:1245772-1246272 8.14e-01 100 chrX:115560348-115560848 3.56e-01 100 chr7:320967-321467 9.65e-01 100 chr19:43271048-43271548 2.66e-01 100 chr5:125408512-125409012 5.45e-01 100 chr17:28725236-28725736 5.45e-01 100 chr19:34173071-34173571 2.00e-01 100 chr19:46389463-46389963 3.88e-02 58_[-5(1.51e-05)]_26 chr1:224621745-224622245 4.10e-02 22_[+7(1.54e-05)]_47 chr12:31849031-31849531 1.14e-12 14_[-3(4.12e-18)]_8_[-7(8.82e-05)]_\ 16 chr20:805631-806131 7.80e-08 62_[-3(3.06e-15)]_7 chr17:6223201-6223701 9.24e-01 100 chr6:31971091-31971591 8.73e-01 100 chr1:67250006-67250506 1.31e-19 11_[+7(4.97e-16)]_13_[+3(4.76e-16)]_\ 14 chr6:142323244-142323744 8.81e-02 100 chr1:226406915-226407415 2.16e-01 77_[-2(7.51e-05)]_1 chr7:149718929-149719429 8.64e-03 [-1(7.04e-05)]_78 chr12:30774547-30775047 4.89e-08 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37_[-2(2.48e-07)]_[-1(2.54e-09)]_19 chr1:42602446-42602946 6.58e-18 14_[+1(5.21e-13)]_[+2(5.21e-12)]_\ [+5(3.29e-07)]_26 chr21:43309827-43310327 1.83e-05 38_[+1(6.36e-08)]_21_[+5(2.75e-06)]_\ 3 chr4:184011189-184011689 8.79e-03 72_[-1(7.02e-08)]_6 chr19:7817249-7817749 4.30e-05 15_[-2(9.37e-05)]_[-1(4.43e-10)]_41 chr11:68486503-68487003 4.23e-03 19_[-1(5.66e-07)]_59 chr12:92878738-92879238 2.07e-13 5_[+1(2.47e-10)]_[+2(1.81e-11)]_\ [+5(5.57e-06)]_35 chr12:108683540-10868404 1.22e-10 33_[+1(1.73e-09)]_[+2(1.31e-08)]_\ [+5(1.32e-08)]_7 chr17:13420856-13421356 9.54e-01 100 chr17:25919962-25920462 1.62e-12 26_[+9(1.99e-20)]_24 chr7:129031346-129031846 3.59e-12 18_[+1(1.81e-07)]_[+2(3.49e-13)]_\ [+5(9.65e-07)]_22 chr17:26885531-26886031 1.04e-17 10_[-9(8.13e-24)]_40 chr9:129741133-129741633 3.36e-06 18_[-2(2.94e-06)]_[-1(2.17e-07)]_38 chr3:43059376-43059876 2.37e-03 9_[-1(1.06e-08)]_69 chr20:32912455-32912955 2.08e-01 76_[-1(1.88e-06)]_2 chr14:104273365-10427386 1.90e-15 40_[-5(2.98e-06)]_[-2(7.60e-12)]_\ [-1(1.12e-11)] chr3:9518287-9518787 1.20e-15 4_[-5(1.32e-08)]_[-2(2.02e-11)]_\ [-1(2.41e-11)]_36 chr10:97069959-97070459 2.44e-02 4_[+1(8.73e-05)]_74 chr20:24881866-24882366 1.04e-09 22_[+1(1.39e-11)]_[+2(2.90e-08)]_34 chr17:9894586-9895086 3.40e-03 45_[+9(1.30e-05)]_5 chr16:88495567-88496067 3.54e-04 3_[-8(5.80e-05)]_17_[-1(5.94e-09)]_\ 27 chr5:174354792-174355292 3.04e-01 100 chr15:96426990-96427490 7.75e-01 100 chr17:26619785-26620285 8.77e-19 19_[+9(2.65e-26)]_31 chr2:71540993-71541493 5.57e-05 33_[-2(7.54e-09)]_45 chr9:38097747-38098247 7.41e-03 60_[-2(7.54e-09)]_18 chr16:203025-203525 2.09e-10 19_[+1(2.54e-09)]_[+2(7.78e-13)]_37 chr19:45260889-45261389 1.01e-07 14_[+1(3.68e-09)]_[+2(4.43e-08)]_42 chrX:1479766-1480266 5.10e-15 37_[+1(1.45e-12)]_[+2(4.21e-09)]_\ [+5(1.50e-07)]_3 chr6:34965451-34965951 8.40e-04 54_[+2(6.86e-09)]_24 chrUn_KI270466v1:195-695 1.41e-01 100 chr22:19848999-19849499 2.53e-02 63_[-2(2.17e-05)]_15 chr17:40503412-40503912 3.24e-15 36_[-5(4.54e-09)]_[-2(9.00e-10)]_\ [-1(2.00e-11)]_4 chr16:50177101-50177601 7.26e-14 13_[-5(8.86e-05)]_[-2(8.58e-13)]_\ [-1(1.12e-11)]_27 chrUn_KI270467v1:3134-36 3.83e-01 100 chr3:126359250-126359750 1.17e-05 18_[-2(1.07e-06)]_[-1(8.92e-10)]_38 chr19:3730917-3731417 1.67e-01 50_[-1(2.35e-05)]_28 chr2:109505730-109506230 2.12e-03 53_[-1(7.02e-08)]_25 chr19:18250279-18250779 2.98e-03 54_[-1(3.10e-07)]_24 chr1:47861402-47861902 6.95e-14 32_[+1(1.85e-12)]_[+2(1.89e-09)]_\ [+5(8.72e-08)]_8 chr10:93208985-93209485 3.32e-01 18_[+6(2.95e-05)]_39 chrUn_KI270467v1:2615-31 1.98e-01 37_[+9(5.09e-05)]_13 chr1:236372410-236372910 2.06e-16 30_[-5(2.85e-08)]_[-2(2.00e-10)]_\ [-1(5.21e-13)]_10 chr17:77233791-77234291 7.49e-01 100 chrUn_KI270467v1:2001-25 6.78e-02 30_[+9(8.89e-05)]_20 chr19:3729060-3729560 4.64e-02 4_[-1(9.71e-05)]_7_[+1(4.25e-05)]_\ 45 chr1:236097023-236097523 9.82e-01 100 chr19:5482309-5482809 6.58e-02 28_[+1(5.05e-05)]_50 chr1:85014547-85015047 7.08e-16 28_[-5(1.32e-08)]_[-2(5.21e-12)]_\ [-1(5.76e-08)]_12 chr16:27525014-27525514 1.78e-02 39_[-1(2.54e-06)]_39 chr19:10604677-10605177 1.38e-01 38_[+1(2.94e-06)]_40 chr17:26603652-26604152 8.01e-17 2_[+10(5.96e-05)]_12_[+9(2.40e-23)]_\ 5 chr22:39634112-39634612 5.37e-05 38_[-1(4.03e-07)]_40 chr16:22258560-22259060 4.15e-05 33_[+1(4.54e-06)]_[+2(1.43e-08)]_23 chr1:110232853-110233353 1.51e-05 45_[-2(4.97e-05)]_[-1(7.74e-08)]_11 chr19:6746763-6747263 1.20e-06 15_[+1(2.54e-06)]_[+2(1.70e-09)]_41 chr19:40205235-40205735 1.20e-01 33_[+9(6.51e-05)]_17 chr19:4657989-4658489 1.76e-02 21_[+1(2.84e-07)]_57 chr1:125179941-125180441 9.97e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: indra ********************************************************************************