# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 597 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered (Mon Jun 11 06:59:24 PDT 2018) # negatives: 597 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Mon Jun 11 06:59:25 PDT 2018) # host: indra # when: Mon Jun 11 07:49:16 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.285 C 0.221 G 0.220 T 0.275 MOTIF AAVCCATC DREME-1 # Word RC Word Pos Neg P-value E-value # BEST AAVCCATC GATGGBTT 60 2 9.8e-017 3.0e-012 # AAACCATC GATGGTTT 29 0 1.3e-009 4.0e-005 # AAGCCATC GATGGCTT 16 1 1.3e-004 3.9e+000 # AACCCATC GATGGGTT 15 1 2.4e-004 7.4e+000 letter-probability matrix: alength= 4 w= 8 nsites= 60 E= 3.0e-012 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.483333 0.250000 0.266667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCAGGVC DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CCAGGVC GBCCTGG 104 20 1.3e-016 4.0e-012 # CCAGGCC GGCCTGG 57 5 4.7e-013 1.4e-008 # CCAGGGC GCCCTGG 27 7 3.5e-004 1.1e+001 # CCAGGAC GTCCTGG 25 8 2.0e-003 6.2e+001 letter-probability matrix: alength= 4 w= 7 nsites= 112 E= 4.0e-012 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.241071 0.517857 0.241071 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ACWGGTGA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST ACWGGTGA TCACCWGT 68 5 3.0e-016 9.1e-012 # ACTGGTGA TCACCAGT 47 3 8.1e-012 2.5e-007 # ACAGGTGA TCACCTGT 21 2 2.8e-005 8.7e-001 letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 9.1e-012 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.318841 0.000000 0.000000 0.681159 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TGAGTCAB DREME-4 # Word RC Word Pos Neg P-value E-value # BEST TGAGTCAB VTGACTCA 59 7 3.7e-012 1.1e-007 # TGAGTCAT ATGACTCA 23 2 8.1e-006 2.5e-001 # TGAGTCAC GTGACTCA 22 4 2.3e-004 7.1e+000 # TGAGTCAG CTGACTCA 15 2 1.1e-003 3.3e+001 letter-probability matrix: alength= 4 w= 8 nsites= 78 E= 1.1e-007 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.320513 0.269231 0.410256 MOTIF AVAGAAA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST AVAGAAA TTTCTBT 120 49 2.0e-009 6.0e-005 # AAAGAAA TTTCTTT 63 28 8.9e-005 2.7e+000 # ACAGAAA TTTCTGT 31 8 1.2e-004 3.6e+000 # AGAGAAA TTTCTCT 38 14 4.6e-004 1.4e+001 letter-probability matrix: alength= 4 w= 7 nsites= 141 E= 6.0e-005 1.000000 0.000000 0.000000 0.000000 0.482270 0.241135 0.276596 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACTTACAC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST ACTTACAC GTGTAAGT 24 0 4.7e-008 1.4e-003 # ACTTACAC GTGTAAGT 24 0 4.7e-008 1.4e-003 letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.4e-003 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 28.14 seconds