# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered (Mon Jun 11 06:59:24 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF454.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Mon Jun 11 06:59:25 PDT 2018)
#        host: indra
#        when: Mon Jun 11 07:46:58 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.211 C 0.287 G 0.289 T 0.213


MOTIF RTGACTCA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    RTGACTCA   TGAGTCAY         60          4   9.5e-015   3.1e-010
#         GTGACTCA   TGAGTCAC         32          1   2.7e-009   8.8e-005
#         ATGACTCA   TGAGTCAT         32          3   1.5e-007   4.9e-003

letter-probability matrix: alength= 4 w= 8 nsites= 77 E= 3.1e-010
0.493506 0.000000 0.506494 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TGACRTCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGACRTCA   TGAYGTCA         43          3   1.2e-010   3.9e-006
#         TGACGTCA   TGACGTCA         21          1   4.7e-006   1.5e-001
#         TGACATCA   TGATGTCA         22          2   1.5e-005   5.0e-001

letter-probability matrix: alength= 4 w= 8 nsites= 57 E= 3.9e-006
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.614035 0.000000 0.385965 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GMGGAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      GMGGAA     TTCCKC        117         50   1.3e-008   4.2e-004
#           GCGGAA     TTCCGC         70         26   1.7e-006   5.5e-002
#           GAGGAA     TTCCTC         55         27   9.3e-004   3.0e+001

letter-probability matrix: alength= 4 w= 6 nsites= 134 E= 4.2e-004
0.000000 0.000000 1.000000 0.000000
0.440299 0.559701 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 17.57 seconds