# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF45.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF45.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF45.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 598 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF45.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 17:36:40 PDT 2018) # negatives: 598 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF45.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 17:36:40 PDT 2018) # host: kali # when: Thu May 10 18:43:26 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.276 C 0.219 G 0.222 T 0.283 MOTIF CTGGRTTY DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CTGGRTTY RAAYCCAG 150 8 1.5e-039 4.5e-035 # CTGGATTT AAATCCAG 68 3 4.0e-018 1.2e-013 # CTGGATTC GAATCCAG 50 1 8.3e-015 2.5e-010 # CTGGGTTC GAACCCAG 16 2 6.1e-004 1.9e+001 # CTGGGTTT AAACCCAG 16 2 6.1e-004 1.9e+001 letter-probability matrix: alength= 4 w= 8 nsites= 151 E= 4.5e-035 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.788079 0.000000 0.211921 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.437086 0.000000 0.562914 MOTIF AAKAYAAC DREME-2 # Word RC Word Pos Neg P-value E-value # BEST AAKAYAAC GTTRTMTT 118 8 5.8e-029 1.8e-024 # AATATAAC GTTATATT 56 2 1.7e-015 5.1e-011 # AAGATAAC GTTATCTT 29 2 1.7e-007 5.2e-003 # AATACAAC GTTGTATT 21 1 4.7e-006 1.4e-001 # AAGACAAC GTTGTCTT 15 3 3.6e-003 1.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 122 E= 1.8e-024 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.360656 0.639344 1.000000 0.000000 0.000000 0.000000 0.000000 0.295082 0.000000 0.704918 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTYTRAA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CTYTRAA TTYARAG 150 33 3.0e-022 9.1e-018 # CTCTGAA TTCAGAG 48 9 3.9e-008 1.2e-003 # CTTTAAA TTTAAAG 41 7 1.9e-007 5.8e-003 # CTTTGAA TTCAAAG 35 9 4.0e-005 1.2e+000 # CTCTAAA TTTAGAG 30 8 1.9e-004 5.8e+000 letter-probability matrix: alength= 4 w= 7 nsites= 156 E= 9.1e-018 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.506410 0.000000 0.493590 0.000000 0.000000 0.000000 1.000000 0.461538 0.000000 0.538462 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACAATRTM DREME-4 # Word RC Word Pos Neg P-value E-value # BEST ACAATRTM KAYATTGT 76 7 5.7e-017 1.7e-012 # ACAATGTC GACATTGT 34 0 3.6e-011 1.1e-006 # ACAATGTA TACATTGT 22 4 2.3e-004 7.0e+000 # ACAATATC GATATTGT 11 1 3.1e-003 9.2e+001 # ACAATATA TATATTGT 12 2 6.2e-003 1.9e+002 letter-probability matrix: alength= 4 w= 8 nsites= 78 E= 1.7e-012 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.282051 0.000000 0.717949 0.000000 0.000000 0.000000 0.000000 1.000000 0.423077 0.576923 0.000000 0.000000 MOTIF GTGCCAR DREME-5 # Word RC Word Pos Neg P-value E-value # BEST GTGCCAR YTGGCAC 55 10 2.4e-009 7.3e-005 # GTGCCAA TTGGCAC 32 5 2.7e-006 8.2e-002 # GTGCCAG CTGGCAC 31 5 4.9e-006 1.5e-001 letter-probability matrix: alength= 4 w= 7 nsites= 73 E= 7.3e-005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.506849 0.000000 0.493151 0.000000 MOTIF AYACTC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST AYACTC GAGTRT 119 53 3.1e-008 9.3e-004 # ACACTC GAGTGT 71 31 2.2e-005 6.7e-001 # ATACTC GAGTAT 50 22 4.6e-004 1.4e+001 letter-probability matrix: alength= 4 w= 6 nsites= 128 E= 9.3e-004 1.000000 0.000000 0.000000 0.000000 0.000000 0.570312 0.000000 0.429688 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GAACAWA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST GAACAWA TWTGTTC 65 19 9.2e-008 2.7e-003 # GAACAAA TTTGTTC 38 10 2.2e-005 6.5e-001 # GAACATA TATGTTC 29 9 7.0e-004 2.1e+001 letter-probability matrix: alength= 4 w= 7 nsites= 68 E= 2.7e-003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.558824 0.000000 0.000000 0.441176 1.000000 0.000000 0.000000 0.000000 MOTIF CAGGAKAC DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CAGGAKAC GTMTCCTG 30 3 5.2e-007 1.5e-002 # CAGGAGAC GTCTCCTG 17 1 6.5e-005 1.9e+000 # CAGGATAC GTATCCTG 13 2 3.5e-003 1.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 1.5e-002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.548387 0.451613 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GTRGAGA DREME-9 # Word RC Word Pos Neg P-value E-value # BEST GTRGAGA TCTCYAC 37 6 5.4e-007 1.6e-002 # GTAGAGA TCTCTAC 22 4 2.3e-004 6.9e+000 # GTGGAGA TCTCCAC 15 2 1.1e-003 3.2e+001 letter-probability matrix: alength= 4 w= 7 nsites= 37 E= 1.6e-002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.594595 0.000000 0.405405 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 53.96 seconds