# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF449.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF449.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF449.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF449.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:25:13 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF449.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:25:13 PST 2017)
#        host: kadru
#        when: Mon Dec 18 16:45:19 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.206 C 0.297 G 0.294 T 0.203


MOTIF GYTGGGCD DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GYTGGGCD   HGCCCARC        418         44   7.6e-121   2.3e-116
#         GTTGGGCT   AGCCCAAC        232          8   5.7e-070   1.7e-065
#         GCTGGGCT   AGCCCAGC         99         17   6.8e-017   2.1e-012
#         GTTGGGCG   CGCCCAAC         50          1   8.3e-015   2.6e-010
#         GTTGGGCA   TGCCCAAC         39          6   1.7e-007   5.3e-003
#         GCTGGGCG   CGCCCAGC         27          6   1.3e-004   4.1e+000
#         GCTGGGCA   TGCCCAGC         25          7   9.2e-004   2.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 522 E= 2.3e-116
0.000000 0.000000 1.000000 0.000000
0.000000 0.331418 0.000000 0.668582
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.124521 0.000000 0.155172 0.720307


MOTIF GTTGGCCD DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTTGGCCD   HGGCCAAC         65         10   6.8e-012   2.0e-007
#         GTTGGCCA   TGGCCAAC         32          3   1.5e-007   4.4e-003
#         GTTGGCCT   AGGCCAAC         23          5   4.0e-004   1.2e+001
#         GTTGGCCG   CGGCCAAC         13          2   3.5e-003   1.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 2.0e-007
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.463768 0.000000 0.188406 0.347826


MOTIF GCCCYACC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCCCYACC   GGTRGGGC         43          9   6.2e-007   1.8e-002
#         GCCCTACC   GGTAGGGC         20          1   9.1e-006   2.7e-001
#         GCCCCACC   GGTGGGGC         24          8   3.1e-003   9.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 1.8e-002
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.545455 0.000000 0.454545
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAYAAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     AAAYAAA    TTTRTTT         34          5   8.5e-007   2.5e-002
#          AAATAAA    TTTATTT         13          0   1.1e-004   3.4e+000
#          AAACAAA    TTTGTTT         24          5   2.4e-004   7.0e+000

letter-probability matrix: alength= 4 w= 7 nsites= 37 E= 2.5e-002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.621622 0.000000 0.378378
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATTWC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       ATTWC      GWAAT        108         52   1.2e-006   3.7e-002
#            ATTTC      GAAAT         72         33   4.4e-005   1.3e+000
#            ATTAC      GTAAT         43         21   3.3e-003   9.7e+001

letter-probability matrix: alength= 4 w= 5 nsites= 123 E= 3.7e-002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.365854 0.000000 0.000000 0.634146
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 36.97 seconds