# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF449.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF449.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF449.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF449.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 17:35:24 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF449.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 17:35:25 PDT 2018)
#        host: kali
#        when: Thu May 10 18:40:53 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.209 C 0.292 G 0.290 T 0.209


MOTIF GYTGGGCD DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GYTGGGCD   HGCCCARC        447         32   5.1e-150   1.6e-145
#         GTTGGGCT   AGCCCAAC        272          3   3.9e-094   1.2e-089
#         GCTGGGCT   AGCCCAGC        106         12   5.0e-022   1.6e-017
#         GTTGGGCG   CGCCCAAC         45          2   3.7e-012   1.1e-007
#         GTTGGGCA   TGCCCAAC         34          2   6.3e-009   2.0e-004
#         GCTGGGCG   CGCCCAGC         28          6   8.0e-005   2.5e+000
#         GCTGGGCA   TGCCCAGC         25         10   7.6e-003   2.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 569 E= 1.6e-145
0.000000 0.000000 1.000000 0.000000
0.000000 0.328647 0.000000 0.671353
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.108963 0.000000 0.137083 0.753954


MOTIF GYTGGCCW DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GYTGGCCW   WGGCCARC         81         19   2.4e-011   7.2e-007
#         GTTGGCCA   TGGCCAAC         31          2   4.6e-008   1.4e-003
#         GCTGGCCT   AGGCCAGC         17          3   1.2e-003   3.6e+001
#         GCTGGCCA   TGGCCAGC         20          6   4.3e-003   1.3e+002
#         GTTGGCCT   AGGCCAAC         22          8   7.4e-003   2.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 91 E= 7.2e-007
0.000000 0.000000 1.000000 0.000000
0.000000 0.406593 0.000000 0.593407
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.560440 0.000000 0.000000 0.439560


MOTIF AGCCCYAC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCCCYAC   GTRGGGCT         48          7   3.2e-009   9.5e-005
#         AGCCCTAC   GTAGGGCT         20          1   9.1e-006   2.7e-001
#         AGCCCCAC   GTGGGGCT         28          6   8.0e-005   2.4e+000

letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 9.5e-005
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.583333 0.000000 0.416667
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CTGWGTA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CTGWGTA    TACWCAG         19          0   1.7e-006   4.9e-002
#          CTGAGTA    TACTCAG         11          0   4.7e-004   1.4e+001
#          CTGTGTA    TACACAG          8          0   3.8e-003   1.1e+002

letter-probability matrix: alength= 4 w= 7 nsites= 19 E= 4.9e-002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.578947 0.000000 0.000000 0.421053
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 56.69 seconds