# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF449.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF449.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF449.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF449.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered (Mon Jun 11 06:59:24 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF449.IDR0.05.filt.narrowPeak.outsidePolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Mon Jun 11 06:59:25 PDT 2018) # host: indra # when: Mon Jun 11 07:39:39 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.229 C 0.268 G 0.266 T 0.237 MOTIF GYTGGGCD DREME-1 # Word RC Word Pos Neg P-value E-value # BEST GYTGGGCD HGCCCARC 431 36 5.8e-136 1.8e-131 # GTTGGGCT AGCCCAAC 262 5 1.5e-086 4.5e-082 # GCTGGGCT AGCCCAGC 106 16 2.2e-019 6.7e-015 # GTTGGGCA TGCCCAAC 58 5 2.5e-013 7.6e-009 # GTTGGGCG CGCCCAAC 28 2 3.3e-007 1.0e-002 # GCTGGGCA TGCCCAGC 31 10 6.0e-004 1.8e+001 # GCTGGGCG CGCCCAGC 16 2 6.1e-004 1.9e+001 letter-probability matrix: alength= 4 w= 8 nsites= 563 E= 1.8e-131 0.000000 0.000000 1.000000 0.000000 0.000000 0.341030 0.000000 0.658970 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.163410 0.000000 0.081705 0.754885 MOTIF GRCCAAC DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GRCCAAC GTTGGYC 98 17 1.3e-016 3.7e-012 # GGCCAAC GTTGGCC 80 13 4.2e-014 1.2e-009 # GACCAAC GTTGGTC 20 4 7.0e-004 2.1e+001 letter-probability matrix: alength= 4 w= 7 nsites= 105 E= 3.7e-012 0.000000 0.000000 1.000000 0.000000 0.190476 0.000000 0.809524 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AWAATA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST AWAATA TATTWT 79 21 4.7e-010 1.4e-005 # AAAATA TATTTT 61 17 1.2e-007 3.5e-003 # ATAATA TATTAT 23 4 1.3e-004 3.9e+000 letter-probability matrix: alength= 4 w= 6 nsites= 88 E= 1.4e-005 1.000000 0.000000 0.000000 0.000000 0.715909 0.000000 0.000000 0.284091 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AATCCCA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST AATCCCA TGGGATT 24 0 4.7e-008 1.4e-003 # AATCCCA TGGGATT 24 0 4.7e-008 1.4e-003 letter-probability matrix: alength= 4 w= 7 nsites= 24 E= 1.4e-003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAGVCCA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST GAGVCCA TGGBCTC 81 28 5.2e-008 1.5e-003 # GAGCCCA TGGGCTC 39 15 5.8e-004 1.7e+001 # GAGACCA TGGTCTC 17 3 1.2e-003 3.5e+001 # GAGGCCA TGGCCTC 28 11 4.2e-003 1.2e+002 letter-probability matrix: alength= 4 w= 7 nsites= 86 E= 1.5e-003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.197674 0.476744 0.325581 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGCCCMG DREME-6 # Word RC Word Pos Neg P-value E-value # BEST AGCCCMG CKGGGCT 60 16 8.2e-008 2.4e-003 # AGCCCCG CGGGGCT 32 5 2.7e-006 7.9e-002 # AGCCCAG CTGGGCT 30 11 1.9e-003 5.4e+001 letter-probability matrix: alength= 4 w= 7 nsites= 66 E= 2.4e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.469697 0.530303 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AGCCCBAC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST AGCCCBAC GTVGGGCT 44 9 3.6e-007 1.0e-002 # AGCCCTAC GTAGGGCT 13 1 8.7e-004 2.5e+001 # AGCCCCAC GTGGGGCT 25 8 2.0e-003 5.8e+001 # AGCCCGAC GTCGGGCT 7 0 7.7e-003 2.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 1.0e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.565217 0.152174 0.282609 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 30.05 seconds