# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF449.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF449.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF449.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF449.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-centered (Mon Jun 11 06:59:24 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF449.IDR0.05.filt.narrowPeak.inPolsteinDNase.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Mon Jun 11 06:59:25 PDT 2018)
#        host: indra
#        when: Mon Jun 11 07:43:00 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.200 C 0.303 G 0.302 T 0.196


MOTIF GCCCARC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     GCCCARC    GYTGGGC        450         53   8.7e-132   2.7e-127
#          GCCCAAC    GTTGGGC        340         14   1.5e-110   4.8e-106
#          GCCCAGC    GCTGGGC        159         39   8.3e-022   2.6e-017

letter-probability matrix: alength= 4 w= 7 nsites= 539 E= 2.7e-127
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.662338 0.000000 0.337662 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GTTGGCCR DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTTGGCCR   YGGCCAAC         39          3   1.6e-009   4.9e-005
#         GTTGGCCA   TGGCCAAC         19          1   1.8e-005   5.3e-001
#         GTTGGCCG   CGGCCAAC         20          2   5.3e-005   1.6e+000

letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 4.9e-005
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.487179 0.000000 0.512821 0.000000


MOTIF ATAMA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       ATAMA      TKTAT        116         46   1.7e-009   5.2e-005
#            ATAAA      TTTAT         82         25   3.3e-009   1.0e-004
#            ATACA      TGTAT         43         23   7.8e-003   2.4e+002

letter-probability matrix: alength= 4 w= 5 nsites= 137 E= 5.2e-005
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.678832 0.321168 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGCCCTAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCCCTAC   GTAGGGCT         29          1   2.1e-008   6.1e-004
#         AGCCCTAC   GTAGGGCT         29          1   2.1e-008   6.1e-004

letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 6.1e-004
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 19.18 seconds