# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF433.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF433.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF433.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF433.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 17:33:25 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF433.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 17:33:25 PDT 2018) # host: kali # when: Thu May 10 18:17:55 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.385 C 0.124 G 0.126 T 0.364 MOTIF ATAAATAA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST ATAAATAA TTATTTAT 558 106 2.6e-172 5.5e-168 # ATAAATAA TTATTTAT 558 106 2.6e-172 5.5e-168 letter-probability matrix: alength= 4 w= 8 nsites= 2791 E= 5.5e-168 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAGWC DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GAGWC GWCTC 412 43 2.2e-118 4.6e-114 # GAGAC GTCTC 353 27 1.0e-102 2.2e-098 # GAGTC GACTC 257 19 3.6e-068 7.6e-064 letter-probability matrix: alength= 4 w= 5 nsites= 633 E= 4.6e-114 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.682464 0.000000 0.000000 0.317536 0.000000 1.000000 0.000000 0.000000 MOTIF ASAGWG DREME-3 # Word RC Word Pos Neg P-value E-value # BEST ASAGWG CWCTST 277 29 2.5e-067 4.9e-063 # ACAGAG CTCTGT 215 6 8.9e-066 1.7e-061 # AGAGTG CACTCT 87 10 6.2e-018 1.2e-013 # AGAGAG CTCTCT 27 9 1.7e-003 3.3e+001 # ACAGTG CACTGT 18 5 5.0e-003 9.6e+001 letter-probability matrix: alength= 4 w= 6 nsites= 310 E= 4.9e-063 1.000000 0.000000 0.000000 0.000000 0.000000 0.658065 0.341935 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.696774 0.000000 0.000000 0.303226 0.000000 0.000000 1.000000 0.000000 MOTIF CWTCTC DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CWTCTC GAGAWG 141 15 1.9e-030 3.6e-026 # CATCTC GAGATG 125 12 9.0e-028 1.7e-023 # CTTCTC GAGAAG 17 3 1.2e-003 2.2e+001 letter-probability matrix: alength= 4 w= 6 nsites= 145 E= 3.6e-026 0.000000 1.000000 0.000000 0.000000 0.882759 0.000000 0.000000 0.117241 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CCAGS DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CCAGS SCTGG 189 46 1.1e-026 2.1e-022 # CCAGG CCTGG 148 27 8.3e-025 1.5e-020 # CCAGC GCTGG 74 22 1.4e-008 2.6e-004 letter-probability matrix: alength= 4 w= 5 nsites= 213 E= 2.1e-022 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.319249 0.680751 0.000000 MOTIF GCMAC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST GCMAC GTKGC 120 38 8.4e-013 1.5e-008 # GCAAC GTTGC 71 19 4.7e-009 8.3e-005 # GCCAC GTGGC 57 20 8.0e-006 1.4e-001 letter-probability matrix: alength= 4 w= 5 nsites= 131 E= 1.5e-008 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.557252 0.442748 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CACVC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CACVC GBGTG 109 37 8.5e-011 1.5e-006 # CACAC GTGTG 45 12 4.1e-006 7.0e-002 # CACCC GGGTG 52 22 2.2e-004 3.7e+000 # CACGC GCGTG 20 5 1.9e-003 3.2e+001 letter-probability matrix: alength= 4 w= 5 nsites= 124 E= 1.5e-006 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.411290 0.435484 0.153226 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CATTTCAG DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CATTTCAG CTGAAATG 24 0 4.7e-008 7.8e-004 # CATTTCAG CTGAAATG 24 0 4.7e-008 7.8e-004 letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 7.8e-004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AAGAMCC DREME-9 # Word RC Word Pos Neg P-value E-value # BEST AAGAMCC GGKTCTT 33 3 7.8e-008 1.3e-003 # AAGACCC GGGTCTT 13 0 1.1e-004 1.9e+000 # AAGAACC GGTTCTT 20 3 2.2e-004 3.6e+000 letter-probability matrix: alength= 4 w= 7 nsites= 33 E= 1.3e-003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.606061 0.393939 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CRAAACTC DREME-10 # Word RC Word Pos Neg P-value E-value # BEST CRAAACTC GAGTTTYG 26 1 1.6e-007 2.6e-003 # CAAAACTC GAGTTTTG 14 0 5.7e-005 9.3e-001 # CGAAACTC GAGTTTCG 12 1 1.6e-003 2.7e+001 letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 2.6e-003 0.000000 1.000000 0.000000 0.000000 0.538462 0.000000 0.461538 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CGCCCA DREME-11 # Word RC Word Pos Neg P-value E-value # BEST CGCCCA TGGGCG 22 1 2.4e-006 3.9e-002 # CGCCCA TGGGCG 22 1 2.4e-006 3.9e-002 letter-probability matrix: alength= 4 w= 6 nsites= 22 E= 3.9e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 48.53 seconds