# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF426.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF426.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF426.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF426.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Tue Mar 13 19:33:44 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF426.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Tue Mar 13 19:33:44 PDT 2018) # host: indra # when: Tue Mar 13 20:00:14 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.402 C 0.107 G 0.109 T 0.382 MOTIF AAATAAAT DREME-1 # Word RC Word Pos Neg P-value E-value # BEST AAATAAAT ATTTATTT 599 132 3.9e-209 7.9e-205 # AAATAAAT ATTTATTT 599 132 3.9e-209 7.9e-205 letter-probability matrix: alength= 4 w= 8 nsites= 3175 E= 7.9e-205 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF GAGWS DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GAGWS SWCTC 468 68 1.2e-130 2.4e-126 # GAGAC GTCTC 355 15 7.5e-117 1.5e-112 # GAGTC GACTC 254 19 5.7e-067 1.1e-062 # GAGTG CACTC 150 16 1.6e-032 3.2e-028 # GAGAG CTCTC 62 20 8.5e-007 1.7e-002 letter-probability matrix: alength= 4 w= 5 nsites= 794 E= 2.4e-126 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.545340 0.000000 0.000000 0.454660 0.000000 0.740554 0.259446 0.000000 MOTIF CAGDS DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CAGDS SHCTG 303 88 1.4e-041 2.5e-037 # CAGAG CTCTG 153 17 9.9e-033 1.8e-028 # CAGGC GCCTG 59 16 1.4e-007 2.4e-003 # CAGTG CACTG 50 12 3.2e-007 5.8e-003 # CAGGG CCCTG 50 22 4.6e-004 8.1e+000 # CAGAC GTCTG 35 14 1.6e-003 2.8e+001 # CAGTC GACTG 32 13 2.8e-003 5.1e+001 letter-probability matrix: alength= 4 w= 5 nsites= 389 E= 2.5e-037 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.496144 0.000000 0.300771 0.203085 0.000000 0.341902 0.658098 0.000000 MOTIF CWTCTC DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CWTCTC GAGAWG 138 9 1.6e-034 2.5e-030 # CATCTC GAGATG 123 5 1.3e-033 2.0e-029 # CTTCTC GAGAAG 17 4 3.4e-003 5.4e+001 letter-probability matrix: alength= 4 w= 6 nsites= 142 E= 2.5e-030 0.000000 1.000000 0.000000 0.000000 0.873239 0.000000 0.000000 0.126761 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GAGCVA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST GAGCVA TBGCTC 81 15 2.9e-013 4.5e-009 # GAGCAA TTGCTC 43 8 2.0e-007 3.2e-003 # GAGCGA TCGCTC 23 4 1.3e-004 2.1e+000 # GAGCCA TGGCTC 19 4 1.2e-003 1.9e+001 letter-probability matrix: alength= 4 w= 6 nsites= 87 E= 4.5e-009 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.505747 0.218391 0.275862 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GYGACA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST GYGACA TGTCRC 51 5 2.4e-011 3.6e-007 # GTGACA TGTCAC 40 5 2.3e-008 3.6e-004 # GCGACA TGTCGC 11 0 4.7e-004 7.2e+000 letter-probability matrix: alength= 4 w= 6 nsites= 51 E= 3.6e-007 0.000000 0.000000 1.000000 0.000000 0.000000 0.215686 0.000000 0.784314 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GGCAACA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST GGCAACA TGTTGCC 24 0 4.7e-008 7.2e-004 # GGCAACA TGTTGCC 24 0 4.7e-008 7.2e-004 letter-probability matrix: alength= 4 w= 7 nsites= 24 E= 7.2e-004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCWCAC DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CCWCAC GTGWGG 20 0 8.1e-007 1.2e-002 # CCACAC GTGTGG 10 0 9.4e-004 1.4e+001 # CCTCAC GTGAGG 10 0 9.4e-004 1.4e+001 letter-probability matrix: alength= 4 w= 6 nsites= 21 E= 1.2e-002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.523810 0.000000 0.000000 0.476190 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 27.37 seconds