# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF423.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF423.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF423.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF423.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 17:31:17 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF423.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 17:31:21 PDT 2018)
#        host: kali
#        when: Thu May 10 18:35:37 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.169 C 0.334 G 0.328 T 0.169


MOTIF CCCHRGGG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCCHRGGG   CCCYDGGG        216         66   2.1e-025   5.9e-021
#         CCCCAGGG   CCCTGGGG        100         31   6.3e-011   1.8e-006
#         CCCAGGGG   CCCCTGGG         72         20   6.9e-009   1.9e-004
#         CCCCGGGG   CCCCGGGG         44         12   6.7e-006   1.9e-001
#         CCCAAGGG   CCCTTGGG         34         10   1.5e-004   4.3e+000
#         CCCTAGGG   CCCTAGGG         13          1   8.7e-004   2.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 241 E= 5.9e-021
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.398340 0.385892 0.000000 0.215768
0.398340 0.000000 0.601660 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CAGSAGGY DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAGSAGGY   RCCTSCTG         77         18   7.6e-011   2.1e-006
#         CAGGAGGT   ACCTCCTG         18          1   3.4e-005   9.5e-001
#         CAGGAGGC   GCCTCCTG         29          6   4.7e-005   1.3e+000
#         CAGCAGGC   GCCTGCTG         24          9   6.1e-003   1.7e+002
#         CAGCAGGT   ACCTGCTG         12          2   6.2e-003   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 84 E= 2.1e-006
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.440476 0.559524 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.642857 0.000000 0.357143


MOTIF GCRCCC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      GCRCCC     GGGYGC        260        165   6.3e-009   1.8e-004
#           GCACCC     GGGTGC        145         84   4.8e-006   1.3e-001
#           GCGCCC     GGGCGC        147         94   8.6e-005   2.4e+000

letter-probability matrix: alength= 4 w= 6 nsites= 353 E= 1.8e-004
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.507082 0.000000 0.492918 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CHGGGA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CHGGGA     TCCCDG        275        185   5.9e-008   1.6e-003
#           CTGGGA     TCCCAG        107         68   9.1e-004   2.5e+001
#           CCGGGA     TCCCGG        104         68   1.9e-003   5.2e+001
#           CAGGGA     TCCCTG        106         71   2.8e-003   7.6e+001

letter-probability matrix: alength= 4 w= 6 nsites= 352 E= 1.6e-003
0.000000 1.000000 0.000000 0.000000
0.326705 0.329545 0.000000 0.343750
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATWAW DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       ATWAW      WTWAT         86         32   9.0e-008   2.4e-003
#            ATAAA      TTTAT         54         15   6.7e-007   1.8e-002
#            ATAAT      ATTAT         26         10   5.1e-003   1.4e+002
#            ATTAA      TTAAT         30         13   6.0e-003   1.6e+002

letter-probability matrix: alength= 4 w= 5 nsites= 123 E= 2.4e-003
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.650407 0.000000 0.000000 0.349593
1.000000 0.000000 0.000000 0.000000
0.780488 0.000000 0.000000 0.219512


# Stopping reason: E-value threshold exceeded
#    Running time: 32.71 seconds