Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF423.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF423.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.fa
Database contains 3000 sequences, 1500000 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF423.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
CCCHDGGG | 8 | CCCCGGGG |
CAGCRGGR | 8 | CAGCAGGG |
DTTTAY | 6 | TTTTAT |
CWCCCD | 6 | CTCCCA |
CNGGGA | 6 | CGGGGA |
AMAMACA | 7 | ACACACA |
CCHGGAGA | 8 | CCTGGAGA |
GCGCWS | 6 | GCGCTG |
GGAAD | 5 | GGAAG |
TAATBA | 6 | TAATGA |
AGATAAG | 7 | AGATAAG |
CACGTGM | 7 | CACGTGC |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF423.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.194 C 0.306 G 0.306 T 0.194
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
AGATAAG | DREME-11 | chr12 | - | 1576519 | 1576525 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr7 | - | 1743068 | 1743074 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr1 | - | 6443408 | 6443414 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr6 | - | 7389215 | 7389221 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr10 | - | 7438326 | 7438332 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr8 | - | 8800652 | 8800658 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr1 | + | 12433751 | 12433757 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr3 | + | 13650531 | 13650537 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chrX | + | 14030163 | 14030169 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr21 | + | 14166587 | 14166593 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr1 | + | 14929596 | 14929602 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr5 | + | 16867151 | 16867157 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr1 | + | 17597242 | 17597248 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr19 | - | 18593564 | 18593570 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr1 | + | 18641192 | 18641198 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr13 | + | 20696245 | 20696251 | 2.55e-05 | 0.516 | agataag |
AGATAAG | DREME-11 | chr7 | + | 22545761 | 22545767 | 2.55e-05 | 0.516 | agataag |
AGATAAG | DREME-11 | chr3 | + | 23020128 | 23020134 | 2.55e-05 | 0.516 | agataag |
AGATAAG | DREME-11 | chr1 | - | 25782955 | 25782961 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr7 | - | 25878434 | 25878440 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr12 | + | 26274145 | 26274151 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr12 | + | 26274553 | 26274559 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr1 | + | 26620777 | 26620783 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr17 | - | 29176766 | 29176772 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr10 | + | 29254616 | 29254622 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr10 | + | 31927955 | 31927961 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr6 | - | 32968144 | 32968150 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr19 | - | 33390728 | 33390734 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr19 | + | 33392433 | 33392439 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr11 | - | 34263549 | 34263555 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr14 | + | 34723000 | 34723006 | 2.55e-05 | 0.516 | agataag |
AGATAAG | DREME-11 | chr17 | + | 34982110 | 34982116 | 2.55e-05 | 0.516 | agataag |
AGATAAG | DREME-11 | chr18 | - | 36512201 | 36512207 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr6 | + | 36680251 | 36680257 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr14 | + | 36835390 | 36835396 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr8 | + | 37479302 | 37479308 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr8 | - | 37479438 | 37479444 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr21 | - | 38054665 | 38054671 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr2 | + | 38440909 | 38440915 | 2.55e-05 | 0.516 | agataag |
AGATAAG | DREME-11 | chr19 | - | 38684138 | 38684144 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr1 | - | 38785833 | 38785839 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr2 | + | 39121373 | 39121379 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr6 | - | 39217915 | 39217921 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr19 | + | 40602253 | 40602259 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr19 | + | 40602253 | 40602259 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr6 | - | 41073597 | 41073603 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr21 | + | 42538847 | 42538853 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr17 | - | 43024545 | 43024551 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr13 | + | 43055173 | 43055179 | 2.55e-05 | 0.516 | agataag |
AGATAAG | DREME-11 | chr15 | + | 44194522 | 44194528 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr19 | - | 44847773 | 44847779 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr1 | - | 46477776 | 46477782 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr22 | - | 46773960 | 46773966 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr18 | - | 48828936 | 48828942 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr12 | + | 49869335 | 49869341 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr17 | + | 49976360 | 49976366 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr6 | - | 52243316 | 52243322 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr6 | + | 52243616 | 52243622 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr1 | - | 52552722 | 52552728 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr12 | + | 52895522 | 52895528 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr17 | - | 57545871 | 57545877 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr17 | + | 57811391 | 57811397 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr17 | + | 57925670 | 57925676 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr18 | - | 58143462 | 58143468 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr18 | + | 58143564 | 58143570 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr17 | - | 58388005 | 58388011 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr14 | + | 58883164 | 58883170 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr3 | + | 61560627 | 61560633 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr10 | - | 61898677 | 61898683 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr10 | + | 62047046 | 62047052 | 2.55e-05 | 0.516 | AGATAag |
AGATAAG | DREME-11 | chr20 | + | 62651359 | 62651365 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr17 | - | 63481081 | 63481087 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr15 | + | 65533320 | 65533326 | 2.55e-05 | 0.516 | agataag |
AGATAAG | DREME-11 | chr12 | + | 65630432 | 65630438 | 2.55e-05 | 0.516 | agataag |
AGATAAG | DREME-11 | chr12 | - | 65630681 | 65630687 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr7 | - | 67101278 | 67101284 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr12 | - | 69484696 | 69484702 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr3 | + | 73490896 | 73490902 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr13 | + | 74324449 | 74324455 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr15 | + | 74585021 | 74585027 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr10 | + | 75613989 | 75613995 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr15 | - | 75694868 | 75694874 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr15 | + | 76311489 | 76311495 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr5 | + | 76616199 | 76616205 | 2.55e-05 | 0.516 | agataag |
AGATAAG | DREME-11 | chr17 | + | 76697922 | 76697928 | 2.55e-05 | 0.516 | agataag |
AGATAAG | DREME-11 | chr17 | + | 76725910 | 76725916 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr10 | - | 77287857 | 77287863 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr10 | - | 77289104 | 77289110 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr9 | + | 78030796 | 78030802 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr6 | - | 79384987 | 79384993 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr17 | - | 81394013 | 81394019 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr4 | - | 81808425 | 81808431 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr16 | + | 85613313 | 85613319 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr9 | + | 86142177 | 86142183 | 2.55e-05 | 0.516 | agataag |
AGATAAG | DREME-11 | chr16 | - | 88688314 | 88688320 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr7 | - | 96622153 | 96622159 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr10 | + | 98467531 | 98467537 | 2.55e-05 | 0.516 | agaTAAG |
AGATAAG | DREME-11 | chr13 | + | 98484670 | 98484676 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr4 | - | 98995327 | 98995333 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr14 | + | 99263011 | 99263017 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr10 | + | 99330546 | 99330552 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr14 | + | 99574622 | 99574628 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr7 | - | 100264827 | 100264833 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr15 | + | 101501866 | 101501872 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr7 | + | 105012521 | 105012527 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr7 | + | 106284130 | 106284136 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr5 | - | 107572173 | 107572179 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr6 | + | 108676777 | 108676783 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr2 | + | 109214245 | 109214251 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr9 | - | 111661234 | 111661240 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr7 | + | 114653785 | 114653791 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr12 | + | 114726306 | 114726312 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr1 | - | 115650226 | 115650232 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr7 | - | 116671933 | 116671939 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr2 | - | 119820631 | 119820637 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr8 | - | 120125104 | 120125110 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr12 | + | 121202911 | 121202917 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr4 | - | 122152119 | 122152125 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr9 | - | 124045787 | 124045793 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr5 | - | 124264077 | 124264083 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr10 | + | 124420500 | 124420506 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr10 | - | 125145539 | 125145545 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr5 | + | 132501505 | 132501511 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr10 | + | 133375442 | 133375448 | 2.55e-05 | 0.516 | agataag |
AGATAAG | DREME-11 | chr5 | + | 138275700 | 138275706 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr1 | - | 154352795 | 154352801 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr6 | + | 154616027 | 154616033 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr1 | - | 159916470 | 159916476 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr1 | + | 160325532 | 160325538 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr1 | - | 167659025 | 167659031 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr2 | - | 168661527 | 168661533 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr2 | - | 169361768 | 169361774 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr2 | + | 172084438 | 172084444 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr5 | + | 172195494 | 172195500 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr1 | - | 180263018 | 180263024 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr2 | - | 181574586 | 181574592 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr4 | + | 183876420 | 183876426 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr3 | + | 194140861 | 194140867 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr1 | - | 202035208 | 202035214 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr1 | - | 211630413 | 211630419 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr1 | - | 220918590 | 220918596 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr1 | + | 223706656 | 223706662 | 2.55e-05 | 0.516 | agataag |
AGATAAG | DREME-11 | chr1 | - | 227564031 | 227564037 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr1 | - | 227766299 | 227766305 | 2.55e-05 | 0.516 | AGATAAG |
AGATAAG | DREME-11 | chr1 | + | 233636467 | 233636473 | 2.55e-05 | 0.516 | agataag |
AGATAAG | DREME-11 | chr2 | + | 236078604 | 236078610 | 2.55e-05 | 0.516 | AGATAAG |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF423.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_16 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF423.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif AGATAAG /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF423.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF423.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF423.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF423.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_16 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF423.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out/dreme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF423.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF423.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF423.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.