# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF423.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF423.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF423.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 3000 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF423.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Tue Jan 02 09:41:29 PST 2018) # negatives: 3000 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF423.IDR0.05.filt.narrowPeak.top3000.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Tue Jan 02 09:41:29 PST 2018) # host: wotan # when: Tue Jan 02 10:08:35 PST 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.180 C 0.322 G 0.322 T 0.177 MOTIF CCCHDGGG DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CCCHDGGG CCCHDGGG 888 305 4.2e-082 1.7e-077 # CCCCAGGG CCCTGGGG 381 114 9.4e-038 3.9e-033 # CCCAGGGG CCCCTGGG 298 113 5.9e-022 2.5e-017 # CCCCGGGG CCCCGGGG 163 51 1.3e-015 5.4e-011 # CCCAAGGG CCCTTGGG 144 48 5.5e-013 2.3e-008 # CCCTAGGG CCCTAGGG 40 13 1.3e-004 5.3e+000 # CCCATGGG CCCATGGG 33 11 6.1e-004 2.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 964 E= 1.7e-077 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.201245 0.525934 0.000000 0.272822 0.301867 0.000000 0.419087 0.279046 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CAGCRGGR DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CAGCRGGR YCCYGCTG 449 134 5.8e-045 2.4e-040 # CAGCAGGG CCCTGCTG 190 48 3.1e-022 1.3e-017 # CAGCAGGA TCCTGCTG 118 24 9.8e-017 4.1e-012 # CAGCGGGA TCCCGCTG 62 20 1.6e-006 6.6e-002 # CAGCGGGG CCCCGCTG 91 42 1.1e-005 4.4e-001 letter-probability matrix: alength= 4 w= 8 nsites= 481 E= 2.4e-040 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.679834 0.000000 0.320166 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.382536 0.000000 0.617464 0.000000 MOTIF DTTTAY DREME-3 # Word RC Word Pos Neg P-value E-value # BEST DTTTAY RTAAAH 455 154 2.1e-039 8.8e-035 # TTTTAT ATAAAA 127 28 6.3e-017 2.6e-012 # ATTTAT ATAAAT 109 23 3.7e-015 1.5e-010 # GTTTAT ATAAAC 92 27 6.1e-010 2.5e-005 # GTTTAC GTAAAC 87 34 6.2e-007 2.6e-002 # ATTTAC GTAAAT 76 28 1.1e-006 4.7e-002 # TTTTAC GTAAAA 66 30 1.4e-004 5.7e+000 letter-probability matrix: alength= 4 w= 6 nsites= 566 E= 8.8e-035 0.325088 0.000000 0.316254 0.358657 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.409894 0.000000 0.590106 MOTIF CWCCCD DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CWCCCD HGGGWG 1979 1499 1.8e-036 7.3e-032 # CACCCA TGGGTG 531 277 2.8e-022 1.1e-017 # CACCCT AGGGTG 451 280 8.1e-012 3.3e-007 # CTCCCG CGGGAG 494 355 1.5e-007 6.2e-003 # CTCCCT AGGGAG 594 444 1.8e-007 7.2e-003 # CTCCCA TGGGAG 505 367 2.5e-007 1.0e-002 # CACCCG CGGGTG 324 232 2.5e-005 1.0e+000 letter-probability matrix: alength= 4 w= 6 nsites= 3157 E= 7.3e-032 0.000000 1.000000 0.000000 0.000000 0.456763 0.000000 0.000000 0.543237 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.362053 0.000000 0.280963 0.356984 MOTIF CNGGGA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CNGGGA TCCCNG 1036 723 3.8e-019 1.5e-014 # CCGGGA TCCCGG 259 146 3.4e-009 1.3e-004 # CGGGGA TCCCCG 391 264 8.5e-008 3.4e-003 # CTGGGA TCCCAG 300 194 3.7e-007 1.5e-002 # CAGGGA TCCCTG 269 188 4.8e-005 1.9e+000 letter-probability matrix: alength= 4 w= 6 nsites= 1295 E= 1.5e-014 0.000000 1.000000 0.000000 0.000000 0.213900 0.208494 0.331274 0.246332 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AMAMACA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST AMAMACA TGTKTKT 177 71 2.4e-012 9.4e-008 # ACAAACA TGTTTGT 55 18 7.5e-006 3.0e-001 # ACACACA TGTGTGT 84 37 9.6e-006 3.8e-001 # AAACACA TGTGTTT 45 15 6.2e-005 2.5e+000 # AAAAACA TGTTTTT 25 10 8.2e-003 3.2e+002 letter-probability matrix: alength= 4 w= 7 nsites= 255 E= 9.4e-008 1.000000 0.000000 0.000000 0.000000 0.239216 0.760784 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.286275 0.713725 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCHGGAGA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CCHGGAGA TCTCCDGG 133 47 2.8e-011 1.1e-006 # CCTGGAGA TCTCCAGG 64 19 3.1e-007 1.2e-002 # CCCGGAGA TCTCCGGG 28 6 9.4e-005 3.7e+000 # CCAGGAGA TCTCCTGG 44 22 4.4e-003 1.7e+002 letter-probability matrix: alength= 4 w= 8 nsites= 135 E= 1.1e-006 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.325926 0.207407 0.000000 0.466667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GCGCWS DREME-8 # Word RC Word Pos Neg P-value E-value # BEST GCGCWS SWGCGC 848 632 5.7e-011 2.2e-006 # GCGCTG CAGCGC 340 236 3.0e-006 1.2e-001 # GCGCAG CTGCGC 315 229 6.4e-005 2.5e+000 # GCGCTC GAGCGC 261 203 2.9e-003 1.1e+002 # GCGCAC GTGCGC 174 129 4.7e-003 1.8e+002 letter-probability matrix: alength= 4 w= 6 nsites= 1040 E= 2.2e-006 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.436538 0.000000 0.000000 0.563462 0.000000 0.406731 0.593269 0.000000 MOTIF GGAAD DREME-9 # Word RC Word Pos Neg P-value E-value # BEST GGAAD HTTCC 1400 1161 2.6e-010 9.9e-006 # GGAAG CTTCC 843 709 4.4e-005 1.7e+000 # GGAAA TTTCC 519 411 6.7e-005 2.6e+000 # GGAAT ATTCC 296 225 6.6e-004 2.5e+001 letter-probability matrix: alength= 4 w= 5 nsites= 1879 E= 9.9e-006 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.303885 0.000000 0.526876 0.169239 MOTIF TAATBA DREME-10 # Word RC Word Pos Neg P-value E-value # BEST TAATBA TVATTA 160 73 3.1e-009 1.2e-004 # TAATGA TCATTA 78 32 5.7e-006 2.1e-001 # TAATCA TGATTA 57 31 3.5e-003 1.3e+002 # TAATTA TAATTA 31 14 7.9e-003 2.9e+002 letter-probability matrix: alength= 4 w= 6 nsites= 170 E= 1.2e-004 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.341176 0.470588 0.188235 1.000000 0.000000 0.000000 0.000000 MOTIF AGATAAG DREME-11 # Word RC Word Pos Neg P-value E-value # BEST AGATAAG CTTATCT 30 1 1.4e-008 5.2e-004 # AGATAAG CTTATCT 30 1 1.4e-008 5.2e-004 letter-probability matrix: alength= 4 w= 7 nsites= 30 E= 5.2e-004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CACGTGM DREME-12 # Word RC Word Pos Neg P-value E-value # BEST CACGTGM KCACGTG 62 19 7.6e-007 2.8e-002 # CACGTGC GCACGTG 40 14 2.5e-004 9.4e+000 # CACGTGA TCACGTG 25 8 2.2e-003 8.2e+001 letter-probability matrix: alength= 4 w= 7 nsites= 65 E= 2.8e-002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.384615 0.615385 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 648.14 seconds