# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF418.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF418.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF418.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF418.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:24:30 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF418.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:24:30 PST 2017) # host: wotan # when: Mon Dec 18 16:46:18 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.352 C 0.157 G 0.150 T 0.341 MOTIF TAAATAAA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST TAAATAAA TTTATTTA 426 93 4.9e-089 1.2e-084 # TAAATAAA TTTATTTA 426 93 4.9e-089 1.2e-084 letter-probability matrix: alength= 4 w= 8 nsites= 2142 E= 1.2e-084 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAGDC DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GAGDC GHCTC 440 109 1.3e-086 3.1e-082 # GAGAC GTCTC 288 34 1.0e-067 2.4e-063 # GAGTC GACTC 210 32 9.2e-041 2.1e-036 # GAGGC GCCTC 128 58 1.4e-008 3.2e-004 letter-probability matrix: alength= 4 w= 5 nsites= 635 E= 3.1e-082 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.527559 0.000000 0.218898 0.253543 0.000000 1.000000 0.000000 0.000000 MOTIF ACAGAS DREME-3 # Word RC Word Pos Neg P-value E-value # BEST ACAGAS STCTGT 186 17 1.2e-043 2.7e-039 # ACAGAG CTCTGT 155 8 2.9e-041 6.3e-037 # ACAGAC GTCTGT 33 9 1.1e-004 2.3e+000 letter-probability matrix: alength= 4 w= 6 nsites= 195 E= 2.7e-039 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.174359 0.825641 0.000000 MOTIF CAGGBTGG DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CAGGBTGG CCAVCCTG 70 0 1.0e-022 2.1e-018 # CAGGCTGG CCAGCCTG 57 0 1.7e-018 3.7e-014 # CAGGGTGG CCACCCTG 9 0 1.9e-003 4.1e+001 # CAGGTTGG CCAACCTG 7 0 7.7e-003 1.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 75 E= 2.1e-018 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.786667 0.120000 0.093333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CATCTCAA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CATCTCAA TTGAGATG 79 2 1.0e-022 2.1e-018 # CATCTCAA TTGAGATG 79 2 1.0e-022 2.1e-018 letter-probability matrix: alength= 4 w= 8 nsites= 79 E= 2.1e-018 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAGAAGCY DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CAGAAGCY RGCTTCTG 56 2 1.7e-015 3.6e-011 # CAGAAGCC GGCTTCTG 33 0 7.4e-011 1.6e-006 # CAGAAGCT AGCTTCTG 24 2 4.3e-006 9.2e-002 letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 3.6e-011 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.586207 0.000000 0.413793 MOTIF ACRCTTC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST ACRCTTC GAAGYGT 49 1 1.7e-014 3.6e-010 # ACACTTC GAAGTGT 38 0 2.0e-012 4.2e-008 # ACGCTTC GAAGCGT 12 1 1.6e-003 3.5e+001 letter-probability matrix: alength= 4 w= 7 nsites= 51 E= 3.6e-010 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.764706 0.000000 0.235294 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GGTGGY DREME-8 # Word RC Word Pos Neg P-value E-value # BEST GGTGGY RCCACC 83 15 8.7e-014 1.8e-009 # GGTGGC GCCACC 61 9 2.0e-011 4.2e-007 # GGTGGT ACCACC 23 6 1.0e-003 2.2e+001 letter-probability matrix: alength= 4 w= 6 nsites= 85 E= 1.8e-009 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.717647 0.000000 0.282353 MOTIF CRCCCAG DREME-9 # Word RC Word Pos Neg P-value E-value # BEST CRCCCAG CTGGGYG 42 4 1.4e-009 2.9e-005 # CACCCAG CTGGGTG 26 3 6.1e-006 1.3e-001 # CGCCCAG CTGGGCG 16 1 1.3e-004 2.6e+000 letter-probability matrix: alength= 4 w= 7 nsites= 42 E= 2.9e-005 0.000000 1.000000 0.000000 0.000000 0.619048 0.000000 0.380952 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF TATGCTGA DREME-10 # Word RC Word Pos Neg P-value E-value # BEST TATGCTGA TCAGCATA 30 1 1.1e-008 2.2e-004 # TATGCTGA TCAGCATA 30 1 1.1e-008 2.2e-004 letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 2.2e-004 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAAACTC DREME-11 # Word RC Word Pos Neg P-value E-value # BEST GAAACTC GAGTTTC 33 2 1.2e-008 2.5e-004 # GAAACTC GAGTTTC 33 2 1.2e-008 2.5e-004 letter-probability matrix: alength= 4 w= 7 nsites= 33 E= 2.5e-004 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTGTTYC DREME-12 # Word RC Word Pos Neg P-value E-value # BEST CTGTTYC GRAACAG 45 8 6.6e-008 1.4e-003 # CTGTTCC GGAACAG 23 3 3.7e-005 7.7e-001 # CTGTTTC GAAACAG 25 5 1.4e-004 2.8e+000 letter-probability matrix: alength= 4 w= 7 nsites= 48 E= 1.4e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.479167 0.000000 0.520833 0.000000 1.000000 0.000000 0.000000 MOTIF AGGGWGGG DREME-13 # Word RC Word Pos Neg P-value E-value # BEST AGGGWGGG CCCWCCCT 28 2 3.3e-007 6.7e-003 # AGGGAGGG CCCTCCCT 21 2 2.9e-005 5.8e-001 # AGGGTGGG CCCACCCT 7 0 7.7e-003 1.6e+002 letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 6.7e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.750000 0.000000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CTGGGMA DREME-14 # Word RC Word Pos Neg P-value E-value # BEST CTGGGMA TKCCCAG 49 12 5.4e-007 1.1e-002 # CTGGGCA TGCCCAG 29 5 1.5e-005 3.1e-001 # CTGGGAA TTCCCAG 20 7 8.9e-003 1.8e+002 letter-probability matrix: alength= 4 w= 7 nsites= 49 E= 1.1e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.408163 0.591837 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 156.56 seconds