Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF418.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF418.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 599 sequences, 299500 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF418.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
GAGGCTAY | 8 | GAGGCTAC |
CAGAAGCY | 8 | CAGAAGCC |
GCTGGGAA | 8 | GCTGGGAA |
CATAAATY | 8 | CATAAATT |
AGTGYCTG | 8 | AGTGCCTG |
RTGASTCA | 8 | ATGAGTCA |
CYAAAAGC | 8 | CTAAAAGC |
GTCAGAA | 7 | GTCAGAA |
CTGTTYCC | 8 | CTGTTCCC |
AGGGWGGG | 8 | AGGGAGGG |
AARTAT | 6 | AAATAT |
CYGTGCCA | 8 | CTGTGCCA |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF418.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.256 C 0.244 G 0.244 T 0.256
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
CTGTTYCC | DREME-9 | chr2 | + | 2900422 | 2900429 | 1.45e-05 | 0.213 | ctgttccc |
CTGTTYCC | DREME-9 | chr4 | + | 3755364 | 3755371 | 1.45e-05 | 0.213 | ctgttccc |
CTGTTYCC | DREME-9 | chr12 | - | 14258153 | 14258160 | 1.45e-05 | 0.213 | CTGTTCCC |
CTGTTYCC | DREME-9 | chr6 | - | 15553290 | 15553297 | 1.45e-05 | 0.213 | CTGTTCCC |
CTGTTYCC | DREME-9 | chr20 | - | 15775097 | 15775104 | 1.45e-05 | 0.213 | CTGTTCCC |
CTGTTYCC | DREME-9 | chr20 | + | 16418845 | 16418852 | 1.45e-05 | 0.213 | ctgttccc |
CTGTTYCC | DREME-9 | chr8 | + | 19537525 | 19537532 | 1.45e-05 | 0.213 | ctgttccc |
CTGTTYCC | DREME-9 | chr1 | + | 21939894 | 21939901 | 1.45e-05 | 0.213 | CTGTTCCC |
CTGTTYCC | DREME-9 | chr5 | - | 22026191 | 22026198 | 1.45e-05 | 0.213 | CTGTTCCC |
CTGTTYCC | DREME-9 | chr19 | - | 28956178 | 28956185 | 1.45e-05 | 0.213 | CTGTTCCC |
CTGTTYCC | DREME-9 | chr19 | + | 29295496 | 29295503 | 1.45e-05 | 0.213 | ctgttccc |
CTGTTYCC | DREME-9 | chr14 | - | 31241740 | 31241747 | 1.45e-05 | 0.213 | CTGTTCCC |
CTGTTYCC | DREME-9 | chr18 | - | 31795282 | 31795289 | 1.45e-05 | 0.213 | CTGTTCCC |
CTGTTYCC | DREME-9 | chr8 | - | 37479705 | 37479712 | 1.45e-05 | 0.213 | CTGTTCCC |
CTGTTYCC | DREME-9 | chr22 | - | 39452384 | 39452391 | 1.45e-05 | 0.213 | CTGTTCCC |
CTGTTYCC | DREME-9 | chr19 | + | 40715665 | 40715672 | 1.45e-05 | 0.213 | CTGTTCCC |
CTGTTYCC | DREME-9 | chr13 | - | 46120304 | 46120311 | 1.45e-05 | 0.213 | CTGTTCCC |
CTGTTYCC | DREME-9 | chr1 | - | 59266496 | 59266503 | 1.45e-05 | 0.213 | CTGTTCCC |
CTGTTYCC | DREME-9 | chr18 | + | 62311017 | 62311024 | 1.45e-05 | 0.213 | ctgttccc |
CTGTTYCC | DREME-9 | chr5 | + | 72282269 | 72282276 | 1.45e-05 | 0.213 | CTGTTCCC |
CTGTTYCC | DREME-9 | chr8 | + | 74099723 | 74099730 | 1.45e-05 | 0.213 | ctgttccc |
CTGTTYCC | DREME-9 | chr5 | - | 76790987 | 76790994 | 1.45e-05 | 0.213 | CTGTTCCC |
CTGTTYCC | DREME-9 | chr5 | + | 77029941 | 77029948 | 1.45e-05 | 0.213 | ctgttccc |
CTGTTYCC | DREME-9 | chr7 | - | 80734593 | 80734600 | 1.45e-05 | 0.213 | CTGTTCCC |
CTGTTYCC | DREME-9 | chr10 | + | 89862352 | 89862359 | 1.45e-05 | 0.213 | CTGTTCCC |
CTGTTYCC | DREME-9 | chr10 | - | 95813222 | 95813229 | 1.45e-05 | 0.213 | CTGTTCCC |
CTGTTYCC | DREME-9 | chr4 | + | 105708663 | 105708670 | 1.45e-05 | 0.213 | CTGTTCCC |
CTGTTYCC | DREME-9 | chr6 | - | 106911494 | 106911501 | 1.45e-05 | 0.213 | CTGTTCCC |
CTGTTYCC | DREME-9 | chr5 | - | 144037618 | 144037625 | 1.45e-05 | 0.213 | CTGTTCCC |
CTGTTYCC | DREME-9 | chr8 | + | 144068250 | 144068257 | 1.45e-05 | 0.213 | ctgttccc |
CTGTTYCC | DREME-9 | chr7 | + | 157889721 | 157889728 | 1.45e-05 | 0.213 | ctgttccc |
CTGTTYCC | DREME-9 | chr1 | - | 175471044 | 175471051 | 1.45e-05 | 0.213 | CTGTTCCC |
CTGTTYCC | DREME-9 | chr4 | + | 176619422 | 176619429 | 1.45e-05 | 0.213 | CTGTTCCC |
CTGTTYCC | DREME-9 | chr4 | - | 184617730 | 184617737 | 1.45e-05 | 0.213 | CTGTTCCC |
CTGTTYCC | DREME-9 | chr2 | - | 218707982 | 218707989 | 1.45e-05 | 0.213 | CTGTTCCC |
CTGTTYCC | DREME-9 | chr1 | - | 231067030 | 231067037 | 1.45e-05 | 0.213 | CTGTTCCC |
CTGTTYCC | DREME-9 | chr1 | - | 234523735 | 234523742 | 1.45e-05 | 0.213 | CTGTTCCC |
CTGTTYCC | DREME-9 | chr2 | + | 1578747 | 1578754 | 2.97e-05 | 0.213 | ctgtttcc |
CTGTTYCC | DREME-9 | chr2 | + | 2900451 | 2900458 | 2.97e-05 | 0.213 | ctgtttcc |
CTGTTYCC | DREME-9 | chr16 | - | 3191605 | 3191612 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr2 | + | 3575265 | 3575272 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr4 | + | 3852945 | 3852952 | 2.97e-05 | 0.213 | ctgtttcc |
CTGTTYCC | DREME-9 | chr19 | + | 4724633 | 4724640 | 2.97e-05 | 0.213 | Ctgtttcc |
CTGTTYCC | DREME-9 | chr5 | + | 10304492 | 10304499 | 2.97e-05 | 0.213 | ctgtttcc |
CTGTTYCC | DREME-9 | chr12 | - | 10362068 | 10362075 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr3 | + | 13031105 | 13031112 | 2.97e-05 | 0.213 | ctgtttcc |
CTGTTYCC | DREME-9 | chr2 | - | 16254893 | 16254900 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr11 | + | 19769492 | 19769499 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr15 | + | 26724850 | 26724857 | 2.97e-05 | 0.213 | ctgtttcc |
CTGTTYCC | DREME-9 | chr6 | + | 28941814 | 28941821 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr16 | + | 29943883 | 29943890 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr12 | - | 31749262 | 31749269 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr9 | + | 32498420 | 32498427 | 2.97e-05 | 0.213 | ctgtttcc |
CTGTTYCC | DREME-9 | chr19 | + | 40715598 | 40715605 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr19 | - | 41501602 | 41501609 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr6 | + | 41767359 | 41767366 | 2.97e-05 | 0.213 | ctgtttcc |
CTGTTYCC | DREME-9 | chr19 | + | 43662641 | 43662648 | 2.97e-05 | 0.213 | ctgtttcc |
CTGTTYCC | DREME-9 | chr19 | + | 44212803 | 44212810 | 2.97e-05 | 0.213 | ctgtttcc |
CTGTTYCC | DREME-9 | chr21 | + | 44939979 | 44939986 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr11 | - | 57735621 | 57735628 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr17 | + | 59619735 | 59619742 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr11 | - | 60925878 | 60925885 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr1 | - | 67700974 | 67700981 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr14 | + | 68089190 | 68089197 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr10 | + | 75469451 | 75469458 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr17 | - | 77234229 | 77234236 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr7 | + | 80734332 | 80734339 | 2.97e-05 | 0.213 | ctgtttcc |
CTGTTYCC | DREME-9 | chr17 | - | 81394201 | 81394208 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr17 | - | 81980654 | 81980661 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr11 | - | 94768021 | 94768028 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr10 | + | 101164370 | 101164377 | 2.97e-05 | 0.213 | ctgtttcc |
CTGTTYCC | DREME-9 | chr7 | + | 102572373 | 102572380 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr10 | + | 102767038 | 102767045 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr5 | + | 113187412 | 113187419 | 2.97e-05 | 0.213 | ctgtttcc |
CTGTTYCC | DREME-9 | chr2 | + | 113809610 | 113809617 | 2.97e-05 | 0.213 | ctgtttcc |
CTGTTYCC | DREME-9 | chr1 | - | 120176524 | 120176531 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr12 | + | 120647045 | 120647052 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr5 | + | 138337402 | 138337409 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr5 | - | 181169675 | 181169682 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr3 | + | 181329283 | 181329290 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr2 | - | 190302231 | 190302238 | 2.97e-05 | 0.213 | CTGTTTCC |
CTGTTYCC | DREME-9 | chr7 | + | 620395 | 620402 | 5.94e-05 | 0.329 | ctgttgcc |
CTGTTYCC | DREME-9 | chr17 | + | 3890329 | 3890336 | 5.94e-05 | 0.329 | CTGTTGCC |
CTGTTYCC | DREME-9 | chr17 | - | 21040150 | 21040157 | 5.94e-05 | 0.329 | CTGTTACC |
CTGTTYCC | DREME-9 | chr16 | - | 22279971 | 22279978 | 5.94e-05 | 0.329 | CTGTTGCC |
CTGTTYCC | DREME-9 | chr16 | + | 22280150 | 22280157 | 5.94e-05 | 0.329 | CTGTTGCC |
CTGTTYCC | DREME-9 | chr1 | - | 27116360 | 27116367 | 5.94e-05 | 0.329 | CTGTTGCC |
CTGTTYCC | DREME-9 | chr6 | - | 28896430 | 28896437 | 5.94e-05 | 0.329 | CTGTTACC |
CTGTTYCC | DREME-9 | chr19 | + | 35386191 | 35386198 | 5.94e-05 | 0.329 | ctgttgcc |
CTGTTYCC | DREME-9 | chr22 | - | 40711942 | 40711949 | 5.94e-05 | 0.329 | CTGTTGCC |
CTGTTYCC | DREME-9 | chr13 | + | 44917710 | 44917717 | 5.94e-05 | 0.329 | CTGTTGCC |
CTGTTYCC | DREME-9 | chr13 | - | 52194497 | 52194504 | 5.94e-05 | 0.329 | CTGTTGCC |
CTGTTYCC | DREME-9 | chr13 | - | 67224466 | 67224473 | 5.94e-05 | 0.329 | CTGTTGCC |
CTGTTYCC | DREME-9 | chr14 | - | 69716183 | 69716190 | 5.94e-05 | 0.329 | CTGTTGCC |
CTGTTYCC | DREME-9 | chr5 | - | 71946282 | 71946289 | 5.94e-05 | 0.329 | CTGTTGCC |
CTGTTYCC | DREME-9 | chr14 | + | 77091314 | 77091321 | 5.94e-05 | 0.329 | CTGTTACC |
CTGTTYCC | DREME-9 | chr17 | + | 82494616 | 82494623 | 5.94e-05 | 0.329 | CTGTTGCC |
CTGTTYCC | DREME-9 | chr10 | + | 86879514 | 86879521 | 5.94e-05 | 0.329 | CTGTTGCC |
CTGTTYCC | DREME-9 | chr10 | - | 88093124 | 88093131 | 5.94e-05 | 0.329 | CTGTTGCC |
CTGTTYCC | DREME-9 | chr4 | + | 88456953 | 88456960 | 5.94e-05 | 0.329 | CTGTTGCC |
CTGTTYCC | DREME-9 | chr6 | + | 90218780 | 90218787 | 5.94e-05 | 0.329 | CTGTTGCC |
CTGTTYCC | DREME-9 | chr8 | - | 94648232 | 94648239 | 5.94e-05 | 0.329 | CTGTTACC |
CTGTTYCC | DREME-9 | chr12 | - | 103957159 | 103957166 | 5.94e-05 | 0.329 | CTGTTGCC |
CTGTTYCC | DREME-9 | chr6 | + | 106829891 | 106829898 | 5.94e-05 | 0.329 | ctgttacc |
CTGTTYCC | DREME-9 | chr5 | + | 168477779 | 168477786 | 5.94e-05 | 0.329 | ctgttgcc |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF418.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_14 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF418.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif CTGTTYCC /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF418.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF418.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF418.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF418.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_14 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF418.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out/dreme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF418.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF418.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF418.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.