# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF418.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF418.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF418.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF418.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 17:29:54 PDT 2018) # negatives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF418.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 17:29:54 PDT 2018) # host: kali # when: Thu May 10 18:41:14 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.242 C 0.255 G 0.253 T 0.249 MOTIF GAGGCTAY DREME-1 # Word RC Word Pos Neg P-value E-value # BEST GAGGCTAY RTAGCCTC 83 1 2.2e-025 7.0e-021 # GAGGCTAC GTAGCCTC 68 0 4.5e-022 1.4e-017 # GAGGCTAT ATAGCCTC 15 1 2.4e-004 7.6e+000 letter-probability matrix: alength= 4 w= 8 nsites= 83 E= 7.0e-021 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.819277 0.000000 0.180723 MOTIF CAGAAGCY DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CAGAAGCY RGCTTCTG 81 2 2.3e-023 7.1e-019 # CAGAAGCC GGCTTCTG 51 0 1.5e-016 4.6e-012 # CAGAAGCT AGCTTCTG 31 2 4.6e-008 1.4e-003 letter-probability matrix: alength= 4 w= 8 nsites= 83 E= 7.1e-019 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.626506 0.000000 0.373494 MOTIF GCTGGGAA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST GCTGGGAA TTCCCAGC 67 3 8.1e-018 2.5e-013 # GCTGGGAA TTCCCAGC 67 3 8.1e-018 2.5e-013 letter-probability matrix: alength= 4 w= 8 nsites= 68 E= 2.5e-013 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CATAAATY DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CATAAATY RATTTATG 52 0 7.0e-017 2.2e-012 # CATAAATT AATTTATG 39 0 9.6e-013 3.0e-008 # CATAAATC GATTTATG 13 0 1.1e-004 3.6e+000 letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 2.2e-012 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.750000 MOTIF AGTGYCTG DREME-5 # Word RC Word Pos Neg P-value E-value # BEST AGTGYCTG CAGRCACT 56 4 1.4e-013 4.4e-009 # AGTGCCTG CAGGCACT 29 2 1.7e-007 5.4e-003 # AGTGTCTG CAGACACT 27 2 6.3e-007 2.0e-002 letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 4.4e-009 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.517857 0.000000 0.482143 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF RTGASTCA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST RTGASTCA TGASTCAY 59 6 7.3e-013 2.3e-008 # ATGAGTCA TGACTCAT 28 1 4.1e-008 1.3e-003 # ATGACTCA TGAGTCAT 25 2 2.3e-006 7.1e-002 # GTGAGTCA TGACTCAC 25 3 1.1e-005 3.5e-001 # GTGACTCA TGAGTCAC 23 3 3.7e-005 1.2e+000 letter-probability matrix: alength= 4 w= 8 nsites= 83 E= 2.3e-008 0.542169 0.000000 0.457831 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.445783 0.554217 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CYAAAAGC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CYAAAAGC GCTTTTRG 57 7 1.3e-011 4.0e-007 # CTAAAAGC GCTTTTAG 37 1 8.2e-011 2.6e-006 # CCAAAAGC GCTTTTGG 20 6 4.3e-003 1.3e+002 letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 4.0e-007 0.000000 1.000000 0.000000 0.000000 0.000000 0.362069 0.000000 0.637931 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF GTCAGAA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST GTCAGAA TTCTGAC 44 3 6.0e-011 1.9e-006 # GTCAGAA TTCTGAC 44 3 6.0e-011 1.9e-006 letter-probability matrix: alength= 4 w= 7 nsites= 46 E= 1.9e-006 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTGTTYCC DREME-9 # Word RC Word Pos Neg P-value E-value # BEST CTGTTYCC GGRAACAG 42 3 2.3e-010 7.0e-006 # CTGTTCCC GGGAACAG 27 3 3.3e-006 1.0e-001 # CTGTTTCC GGAAACAG 15 0 2.8e-005 8.6e-001 letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 7.0e-006 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.642857 0.000000 0.357143 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AGGGWGGG DREME-10 # Word RC Word Pos Neg P-value E-value # BEST AGGGWGGG CCCWCCCT 47 6 1.4e-009 4.4e-005 # AGGGAGGG CCCTCCCT 35 6 1.7e-006 5.3e-002 # AGGGTGGG CCCACCCT 12 0 2.3e-004 7.1e+000 letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 4.4e-005 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.744681 0.000000 0.000000 0.255319 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF AARTAT DREME-11 # Word RC Word Pos Neg P-value E-value # BEST AARTAT ATAYTT 68 21 1.1e-007 3.4e-003 # AAGTAT ATACTT 33 8 4.3e-005 1.3e+000 # AAATAT ATATTT 40 16 7.2e-004 2.2e+001 letter-probability matrix: alength= 4 w= 6 nsites= 85 E= 3.4e-003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF CYGTGCCA DREME-12 # Word RC Word Pos Neg P-value E-value # BEST CYGTGCCA TGGCACRG 29 3 9.7e-007 3.0e-002 # CTGTGCCA TGGCACAG 22 3 6.8e-005 2.1e+000 # CCGTGCCA TGGCACGG 7 0 7.7e-003 2.3e+002 letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 3.0e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.241379 0.000000 0.758621 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 92.40 seconds