# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF398.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF398.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF398.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF398.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:23:34 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF398.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:23:34 PST 2017)
#        host: kali
#        when: Mon Dec 18 16:40:48 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.173 C 0.326 G 0.317 T 0.184


MOTIF GGAGGGRR DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGAGGGRR   YYCCCTCC        354        174   4.5e-026   1.2e-021
#         GGAGGGAG   CTCCCTCC        170         78   2.9e-011   7.6e-007
#         GGAGGGAA   TTCCCTCC         77         19   2.1e-010   5.3e-006
#         GGAGGGGG   CCCCCTCC        141         69   2.7e-008   7.0e-004
#         GGAGGGGA   TCCCCTCC         94         48   2.6e-005   6.6e-001

letter-probability matrix: alength= 4 w= 8 nsites= 565 E= 1.2e-021
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.541593 0.000000 0.458407 0.000000
0.323894 0.000000 0.676106 0.000000


MOTIF CCSCCAC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CCSCCAC    GTGGSGG        132         55   4.6e-010   1.2e-005
#          CCCCCAC    GTGGGGG        110         46   2.2e-008   5.6e-004
#          CCGCCAC    GTGGCGG         27         11   6.2e-003   1.6e+002

letter-probability matrix: alength= 4 w= 7 nsites= 145 E= 1.2e-005
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.800000 0.200000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF STGASTCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    STGASTCA   TGASTCAS         32          1   2.7e-009   6.7e-005
#         GTGAGTCA   TGACTCAC         15          0   2.8e-005   7.0e-001
#         CTGACTCA   TGAGTCAG         12          1   1.6e-003   4.1e+001
#         CTGAGTCA   TGACTCAG         12          1   1.6e-003   4.1e+001
#         GTGACTCA   TGAGTCAC          9          0   1.9e-003   4.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 6.7e-005
0.000000 0.617647 0.382353 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.411765 0.588235 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF RCGCGS DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      RCGCGS     SCGCGY        126         57   1.7e-008   4.4e-004
#           ACGCGC     GCGCGT         30         10   9.4e-004   2.4e+001
#           GCGCGC     GCGCGC         41         18   1.5e-003   3.8e+001
#           GCGCGG     CCGCGC         61         33   1.8e-003   4.4e+001
#           ACGCGG     CCGCGT         17          5   8.0e-003   2.0e+002

letter-probability matrix: alength= 4 w= 6 nsites= 149 E= 4.4e-004
0.281879 0.000000 0.718121 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.422819 0.577181 0.000000


MOTIF CCDCCTCC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCDCCTCC   GGAGGHGG        126         63   3.7e-007   9.1e-003
#         CCTCCTCC   GGAGGAGG         80         44   4.2e-004   1.0e+001
#         CCACCTCC   GGAGGTGG         30          9   4.4e-004   1.1e+001
#         CCGCCTCC   GGAGGCGG         35         17   7.6e-003   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 165 E= 9.1e-003
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.175758 0.000000 0.218182 0.606061
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 28.80 seconds