# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF394.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF394.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF394.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF394.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:22:30 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF394.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:22:30 PST 2017) # host: wotan # when: Mon Dec 18 16:46:15 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.288 C 0.218 G 0.221 T 0.274 MOTIF GAGWAGC DREME-1 # Word RC Word Pos Neg P-value E-value # BEST GAGWAGC GCTWCTC 224 12 3.1e-062 8.8e-058 # GAGTAGC GCTACTC 137 3 7.2e-041 2.0e-036 # GAGAAGC GCTTCTC 95 9 5.3e-021 1.5e-016 letter-probability matrix: alength= 4 w= 7 nsites= 271 E= 8.8e-058 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.420664 0.000000 0.000000 0.579336 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TAAATAAA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST TAAATAAA TTTATTTA 250 52 4.9e-042 1.4e-037 # TAAATAAA TTTATTTA 250 52 4.9e-042 1.4e-037 letter-probability matrix: alength= 4 w= 8 nsites= 1286 E= 1.4e-037 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TCTCAAAA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST TCTCAAAA TTTTGAGA 127 5 5.8e-035 1.6e-030 # TCTCAAAA TTTTGAGA 127 5 5.8e-035 1.6e-030 letter-probability matrix: alength= 4 w= 8 nsites= 128 E= 1.6e-030 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAGTCWY DREME-4 # Word RC Word Pos Neg P-value E-value # BEST GAGTCWY RWGACTC 131 18 2.7e-025 7.4e-021 # GAGTCTC GAGACTC 66 7 4.2e-014 1.1e-009 # GAGTCTT AAGACTC 37 5 1.4e-007 3.9e-003 # GAGTCAC GTGACTC 15 2 1.1e-003 3.0e+001 # GAGTCAT ATGACTC 15 4 9.1e-003 2.5e+002 letter-probability matrix: alength= 4 w= 7 nsites= 134 E= 7.4e-021 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.223881 0.000000 0.000000 0.776119 0.000000 0.604478 0.000000 0.395522 MOTIF ACAGAGY DREME-5 # Word RC Word Pos Neg P-value E-value # BEST ACAGAGY RCTCTGT 77 7 2.9e-017 7.9e-013 # ACAGAGT ACTCTGT 37 2 8.5e-010 2.3e-005 # ACAGAGC GCTCTGT 40 5 2.3e-008 6.3e-004 letter-probability matrix: alength= 4 w= 7 nsites= 79 E= 7.9e-013 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.518987 0.000000 0.481013 MOTIF GGAYTACA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST GGAYTACA TGTARTCC 45 1 2.9e-013 7.9e-009 # GGATTACA TGTAATCC 25 1 3.2e-007 8.5e-003 # GGACTACA TGTAGTCC 20 0 8.1e-007 2.2e-002 letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 7.9e-009 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.446809 0.000000 0.553191 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTGYCTCA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CTGYCTCA TGAGRCAG 37 0 4.1e-012 1.1e-007 # CTGCCTCA TGAGGCAG 30 0 6.4e-010 1.7e-005 # CTGTCTCA TGAGACAG 7 0 7.7e-003 2.1e+002 letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 1.1e-007 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.810811 0.000000 0.189189 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGBAGCTG DREME-8 # Word RC Word Pos Neg P-value E-value # BEST AGBAGCTG CAGCTVCT 55 9 7.1e-010 1.9e-005 # AGCAGCTG CAGCTGCT 25 4 4.3e-005 1.2e+000 # AGGAGCTG CAGCTCCT 23 4 1.3e-004 3.6e+000 # AGTAGCTG CAGCTACT 10 1 5.7e-003 1.5e+002 letter-probability matrix: alength= 4 w= 8 nsites= 67 E= 1.9e-005 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.432836 0.417910 0.149254 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 MOTIF GAVAC DREME-9 # Word RC Word Pos Neg P-value E-value # BEST GAVAC GTBTC 237 140 1.0e-009 2.7e-005 # GAGAC GTCTC 127 75 3.9e-005 1.0e+000 # GAAAC GTTTC 89 46 5.6e-005 1.5e+000 # GACAC GTGTC 65 34 7.7e-004 2.0e+001 letter-probability matrix: alength= 4 w= 5 nsites= 305 E= 2.7e-005 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.304918 0.239344 0.455738 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF RCCACCA DREME-10 # Word RC Word Pos Neg P-value E-value # BEST RCCACCA TGGTGGY 48 7 3.2e-009 8.1e-005 # GCCACCA TGGTGGC 36 6 9.7e-007 2.5e-002 # ACCACCA TGGTGGT 12 1 1.6e-003 4.1e+001 letter-probability matrix: alength= 4 w= 7 nsites= 49 E= 8.1e-005 0.244898 0.000000 0.755102 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCCRGCTA DREME-11 # Word RC Word Pos Neg P-value E-value # BEST CCCRGCTA TAGCYGGG 30 1 1.1e-008 2.7e-004 # CCCAGCTA TAGCTGGG 20 1 9.1e-006 2.3e-001 # CCCGGCTA TAGCCGGG 10 0 9.4e-004 2.4e+001 letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 2.7e-004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.677419 0.000000 0.322581 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGAATSGC DREME-12 # Word RC Word Pos Neg P-value E-value # BEST AGAATSGC GCSATTCT 24 1 6.2e-007 1.6e-002 # AGAATCGC GCGATTCT 14 1 4.6e-004 1.1e+001 # AGAATGGC GCCATTCT 10 0 9.4e-004 2.4e+001 letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.6e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.583333 0.416667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 152.25 seconds