******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr7:91264172-91264672 1.0000 100 chr1:229893815-229894315 1.0000 100 chr7:70092312-70092812 1.0000 100 chr22:36528825-36529325 1.0000 100 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1.0000 100 chr10:75379154-75379654 1.0000 100 chr9:132193335-132193835 1.0000 100 chr5:1950665-1951165 1.0000 100 chr7:133492163-133492663 1.0000 100 chr15:74546070-74546570 1.0000 100 chr7:150359969-150360469 1.0000 100 chr12:113318868-11331936 1.0000 100 chr10:87845956-87846456 1.0000 100 chr12:123232745-12323324 1.0000 100 chr1:32817104-32817604 1.0000 100 chr13:110965210-11096571 1.0000 100 chr10:93209017-93209517 1.0000 100 chr6:111568240-111568740 1.0000 100 chr1:81032902-81033402 1.0000 100 chr2:27663586-27664086 1.0000 100 chr17:18087645-18088145 1.0000 100 chr10:22552801-22553301 1.0000 100 chr19:40920962-40921462 1.0000 100 chr1:46132517-46133017 1.0000 100 chr16:12120417-12120917 1.0000 100 chr12:124914582-12491508 1.0000 100 chr6:43321955-43322455 1.0000 100 chr1:37989842-37990342 1.0000 100 chr9:18976699-18977199 1.0000 100 chr3:9731385-9731885 1.0000 100 chr19:17337113-17337613 1.0000 100 chr10:44752841-44753341 1.0000 100 chr19:39411875-39412375 1.0000 100 chr1:93078915-93079415 1.0000 100 chr1:63523152-63523652 1.0000 100 chr13:113208503-11320900 1.0000 100 chr22:40711455-40711955 1.0000 100 chr1:44213177-44213677 1.0000 100 chr19:41310148-41310648 1.0000 100 chr12:123601806-12360230 1.0000 100 chr1:25998107-25998607 1.0000 100 chr11:723184-723684 1.0000 100 chr6:85642962-85643462 1.0000 100 chr19:37655823-37656323 1.0000 100 chr17:77233791-77234291 1.0000 100 chr19:36604746-36605246 1.0000 100 chr1:151070354-151070854 1.0000 100 chr1:81126914-81127414 1.0000 100 chr1:183471806-183472306 1.0000 100 chr19:35643382-35643882 1.0000 100 chr17:51153299-51153799 1.0000 100 chr9:133417907-133418407 1.0000 100 chr5:94469749-94470249 1.0000 100 chr11:47578726-47579226 1.0000 100 chr19:14396688-14397188 1.0000 100 chr1:1374990-1375490 1.0000 100 chr12:12266924-12267424 1.0000 100 chr19:1021384-1021884 1.0000 100 chr10:93702404-93702904 1.0000 100 chr17:3890051-3890551 1.0000 100 chrX:73944015-73944515 1.0000 100 chr1:16122826-16123326 1.0000 100 chr7:435508-436008 1.0000 100 chr3:53347401-53347901 1.0000 100 chr10:101442023-10144252 1.0000 100 chr22:27766628-27767128 1.0000 100 chr19:1383508-1384008 1.0000 100 chr8:37302627-37303127 1.0000 100 chr17:60173306-60173806 1.0000 100 chr19:35947339-35947839 1.0000 100 chr1:3992015-3992515 1.0000 100 chr9:85743181-85743681 1.0000 100 chr19:28425257-28425757 1.0000 100 chr21:39313502-39314002 1.0000 100 chr5:124734995-124735495 1.0000 100 chr12:57111980-57112480 1.0000 100 chr19:4207117-4207617 1.0000 100 chr6:82260143-82260643 1.0000 100 chr20:58650953-58651453 1.0000 100 chr1:234723932-234724432 1.0000 100 chr17:74513994-74514494 1.0000 100 chr19:4208697-4209197 1.0000 100 chr17:45148332-45148832 1.0000 100 chr19:10394952-10395452 1.0000 100 chr19:7944140-7944640 1.0000 100 chr1:155244582-155245082 1.0000 100 chr1:236097024-236097524 1.0000 100 chr17:78558321-78558821 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out -mod zoops -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 600 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 60000 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.223 C 0.277 G 0.277 T 0.223 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background): A 0.221 C 0.279 G 0.279 T 0.221 ******************************************************************************** ******************************************************************************** MOTIF GTGTGTGTGTGTGTGTGTGT MEME-1 width = 20 sites = 63 llr = 1516 E-value = 2.1e-384 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGTGTGTGTGTGTGTGT MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::11:::::::::::::: pos.-specific C :::1::1::::::::::::: probability G 9:a:9:9:a:a:9:a:a:9: matrix T :a:9:9:a:9:a:a:a:a:9 bits 2.2 * 2.0 * * * * * * 1.7 *** * ***** ***** * 1.5 **** * ************* Relative 1.3 ******************** Entropy 1.1 ******************** (34.7 bits) 0.9 ******************** 0.7 ******************** 0.4 ******************** 0.2 ******************** 0.0 -------------------- Multilevel GTGTGTGTGTGTGTGTGTGT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGTGTGTGTGTGTGT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chr12:57111980-57112480 - 43 7.94e-13 GTGTGTGTGT GTGTGTGTGTGTGTGTGTGT GGTGTTGTGA chr19:35947339-35947839 + 61 7.94e-13 CACTGTTCgt gtgtgtgtgtgtgtgtgtgt gtgtgtgtgt chr10:101442023-10144252 + 77 7.94e-13 gtgtgtatgt gtgtgtgtgtgtgtgtgtgt AAAT chr6:111568240-111568740 + 3 7.94e-13 gt gtgtgtgtgtgtgtgtgtgt gtgtgtgtgt chr17:73310534-73311034 - 11 7.94e-13 GTGTGTGTGT GTGTGTGTGTGTGTGTGTGT GACTGGGGGA chr1:27489139-27489639 - 10 7.94e-13 GTGTGTGTGT GTGTGTGTGTGTGTGTGTGT ACCATGAAG chr19:39320101-39320601 - 5 7.94e-13 GTGTGTGTGT GTGTGTGTGTGTGTGTGTGT CTGC chr1:40374328-40374828 + 71 7.94e-13 GTGCGTGCgt gtgtgtgtgtgtgtgtgtgt gtgtgtgaga chr1:21345610-21346110 + 78 7.94e-13 AGCTGCTtgt gtgtgtgtgtgtgtgtgtgt gtg chr1:100351732-100352232 + 46 7.94e-13 TTACGAgtgt gtgtgtgtgtgtgtgtgtgt gtgtgtgCGC chr3:69250036-69250536 + 57 7.94e-13 gtgtgtgcgt gtgtgtgtgtgtgtgtgtgt gtgtgtCTAT chr6:96924591-96925091 - 12 7.94e-13 GTGTGTGTGT GTGTGTGTGTGTGTGTGTGT GCCTGCGTGC chr12:106075008-10607550 - 79 7.94e-13 GT GTGTGTGTGTGTGTGTGTGT TGATTAATAC chr1:116877961-116878461 + 24 7.94e-13 AGCAGAgtgt gtgtgtgtgtgtgtgtgtgt gtgtgtgtgt chr19:33796980-33797480 + 72 7.94e-13 CGCGCGgtgt gtgtgtgtgtgtgtgtgtgt gtgtgtgtg chr1:161097509-161098009 + 31 7.94e-13 ctctctctgt gtgtgtgtgtgtgtgtgtgt gtgtgtgtgt chr6:36680103-36680603 + 7 7.94e-13 GGGCgt gtgtgtgtgtgtgtgtgtgt gtgtgtgtgt chr11:120347011-12034751 + 63 7.94e-13 ctctGTCtgt gtgtgtgtgtgtgtgtgtgt gtgtgtgtgt chr19:53979823-53980323 + 37 7.94e-13 GCGCGCACgt gtgtgtgtgtgtgtgtgtgt gtgtgtgcgc chr17:76671166-76671666 + 32 7.94e-13 GCAAGGgtgt gtgtgtgtgtgtgtgtgtgt gtCTTGGCGC chr22:35840399-35840899 + 35 7.94e-13 gtgtgtgcgt gtgtgtgtgtgtgtgtgtgt gtgtAGGGGG chr21:35047330-35047830 - 1 7.94e-13 GTGTGTGTGT GTGTGTGTGTGTGTGTGTGT chr1:10793917-10794417 + 62 7.94e-13 gtgtatgcgt gtgtgtgtgtgtgtgtgtgt gCGCGCGCGC chr19:35819842-35820342 - 16 7.94e-13 GTGTGTGTGT GTGTGTGTGTGTGTGTGTGT ACATTGGGTT chr1:208021775-208022275 + 55 7.94e-13 GGTATCTCgt gtgtgtgtgtgtgtgtgtgt gtgtgtgtgt chr20:53611363-53611863 - 20 7.94e-13 CAGAGGTGGT GTGTGTGTGTGTGTGTGTGT TTTTAAATGG chr6:43702489-43702989 + 37 7.94e-13 gtgtgtttgt gtgtgtgtgtgtgtgtgtgt gtgtttgtgt chr1:27608573-27609073 + 71 7.94e-13 CCAGGCTCgt gtgtgtgtgtgtgtgtgtgt gtgtgtgtgt chr17:46835825-46836325 + 73 7.94e-13 ACGCTGACgt gtgtgtgtgtgtgtgtgtgt gtgtgtgt chr15:40092223-40092723 - 32 7.94e-13 GCACAAGGGT GTGTGTGTGTGTGTGTGTGT GAGTCTGTGT chr1:156661287-156661787 + 71 7.94e-13 CCCAGTCCgt gtgtgtgtgtgtgtgtgtgt gtgtgtgtgt chr12:124518909-12451940 - 1 7.94e-13 GTTGGCCTGT GTGTGTGTGTGTGTGTGTGT chr10:101830485-10183098 - 2 7.94e-13 GCGTGCGTGT GTGTGTGTGTGTGTGTGTGT G chr2:241881333-241881833 + 64 7.94e-13 GGCCCAGCgt gtgtgtgtgtgtgtgtgtgt gtgtgtgtgt chr12:6778720-6779220 - 2 7.94e-13 CGCGCCGCGC GTGTGTGTGTGTGTGTGTGT G chr17:66200632-66201132 - 29 7.94e-13 GTGAGTGTGT GTGTGTGTGTGTGTGTGTGT CTGCGCATGC chr11:73377012-73377512 + 62 7.94e-13 gtgtcagtgt gtgtgtgtgtgtgtgtgtgt ctgCGCCTAG chr15:47717548-47718048 + 23 7.94e-13 GAATCGCtgt gtgtgtgtgtgtgtgtgtgt gtgtgCGCGC chr19:36837849-36838349 - 65 3.01e-12 GTGTGTGTGT GTGTATGTGTGTGTGTGTGT GTGTGTGCGC chr5:93582540-93583040 + 42 3.01e-12 gtgtgtgtgt gtgtatgtgtgtgtgtgtgt gACCATAGAC chr20:52972203-52972703 + 22 3.64e-12 gtgcgagggt gtgtgtgtgtgtttgtgtgt gtgtgcatat chr19:47471971-47472471 - 26 4.64e-12 GTGTGTGTGT GTGCGTGTGTGTGTGTGTGT GTTGGGGGGC chr19:37594990-37595490 + 16 8.54e-12 GGCCAtgtgt gtgtgtgtgcgtgtgtgtgt gggtctgtgc chr14:103104968-10310546 + 59 8.54e-12 GATCTGAGGG GTGTGTGTGCGTGTGTGTGT AGCAGAGTTG chr8:16825862-16826362 - 3 8.54e-12 GTCTGTGTGT GTGTGTGTGCGTGTGTGTGT AT chr1:156660148-156660648 + 40 9.33e-12 CCGCgtgtgc ctgtgtgtgtgtgtgtgtgt acgcgtgcgt chr1:150235805-150236305 - 47 1.49e-11 CTGCGGGTGT GTGTGTGTATGTGTGTGTGT ATGTGTGTGC chr3:134795193-134795693 - 14 3.07e-11 GGGTGTGGGT GTGCATGTGTGTGTGTGTGT TTATGGGAGA chr9:95507787-95508287 + 50 9.07e-11 GGAGAGgtgt gagtgagtgtgtgtgtgtgt gtgagagaga chr1:228781650-228782150 + 56 9.07e-11 tttgtgtggt ctgtgtgtgtgtgtgtgtgg tctgtgtgta chr3:194134811-194135311 - 28 1.42e-10 GTGTGCGTGC GTGTGTGAGTGAGTGTGTGT GCGCGCGCCC chr10:100228810-10022931 - 1 1.54e-10 GAATGTGTGC GTCCGTGTGTGTGTGTGTGT chr1:42177548-42178048 - 9 1.83e-10 GAGTGTGCGC GCGCGTGTGTGTGTGTGTGT TTTAATGG chr2:234969768-234970268 - 41 3.46e-10 ATTTGTGAGT GTGTGACAGTGTGTGTGTGT GAGACAGCGA chr19:36604746-36605246 - 26 4.55e-10 GAGGGAGACT GTGTGATTGTGTTTGTGTGT GCCGTTCTGT chr19:37371118-37371618 + 75 4.55e-10 ATGTGATCTT GTGTCACTGTGTGTGTGTGT TTGTGC chr1:25430092-25430592 + 15 9.59e-10 CTGGCAGGGT GTGTGTCTGTGTGCGTGTGG GGTTTGCTTT chr12:1605015-1605515 + 20 1.78e-09 gggagggtgt gtgtgtgtgagagtgagtgt atgtgagaga chr19:36850998-36851498 + 45 2.24e-09 TCCCCTTGGG GTGTGTGTGTGTGTGTTTAC TACCATTTGC chr16:12120417-12120917 + 46 3.48e-09 TCATCTGGCT GTGTGTCTGTGTTTATGTTT GGGTCCCTGG chr9:136631310-136631810 - 10 4.02e-09 GTGTGAGAGC ATGTATGTGTGTATGTGTGG GAGCATGCT chr18:58781564-58782064 + 22 5.24e-09 tgtgtgtggc atgtgcctgtgtgtgtgtat gccttggtgg chr1:40691597-40692097 + 73 5.79e-08 GAGCAGAGGT GTGTGAGTGTGCGGGAGTTT CTGTGCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGTGTGTGTGTGTGT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:57111980-57112480 7.9e-13 42_[-1]_38 chr19:35947339-35947839 7.9e-13 60_[+1]_20 chr10:101442023-10144252 7.9e-13 76_[+1]_4 chr6:111568240-111568740 7.9e-13 2_[+1]_78 chr17:73310534-73311034 7.9e-13 10_[-1]_70 chr1:27489139-27489639 7.9e-13 9_[-1]_71 chr19:39320101-39320601 7.9e-13 4_[-1]_76 chr1:40374328-40374828 7.9e-13 70_[+1]_10 chr1:21345610-21346110 7.9e-13 77_[+1]_3 chr1:100351732-100352232 7.9e-13 45_[+1]_35 chr3:69250036-69250536 7.9e-13 56_[+1]_24 chr6:96924591-96925091 7.9e-13 11_[-1]_69 chr12:106075008-10607550 7.9e-13 78_[-1]_2 chr1:116877961-116878461 7.9e-13 23_[+1]_57 chr19:33796980-33797480 7.9e-13 71_[+1]_9 chr1:161097509-161098009 7.9e-13 30_[+1]_50 chr6:36680103-36680603 7.9e-13 6_[+1]_74 chr11:120347011-12034751 7.9e-13 62_[+1]_18 chr19:53979823-53980323 7.9e-13 36_[+1]_44 chr17:76671166-76671666 7.9e-13 31_[+1]_49 chr22:35840399-35840899 7.9e-13 34_[+1]_46 chr21:35047330-35047830 7.9e-13 [-1]_80 chr1:10793917-10794417 7.9e-13 61_[+1]_19 chr19:35819842-35820342 7.9e-13 15_[-1]_65 chr1:208021775-208022275 7.9e-13 54_[+1]_26 chr20:53611363-53611863 7.9e-13 19_[-1]_61 chr6:43702489-43702989 7.9e-13 36_[+1]_44 chr1:27608573-27609073 7.9e-13 70_[+1]_10 chr17:46835825-46836325 7.9e-13 72_[+1]_8 chr15:40092223-40092723 7.9e-13 31_[-1]_49 chr1:156661287-156661787 7.9e-13 70_[+1]_10 chr12:124518909-12451940 7.9e-13 [-1]_80 chr10:101830485-10183098 7.9e-13 1_[-1]_79 chr2:241881333-241881833 7.9e-13 63_[+1]_17 chr12:6778720-6779220 7.9e-13 1_[-1]_79 chr17:66200632-66201132 7.9e-13 28_[-1]_52 chr11:73377012-73377512 7.9e-13 61_[+1]_19 chr15:47717548-47718048 7.9e-13 22_[+1]_58 chr19:36837849-36838349 3e-12 64_[-1]_16 chr5:93582540-93583040 3e-12 41_[+1]_39 chr20:52972203-52972703 3.6e-12 21_[+1]_59 chr19:47471971-47472471 4.6e-12 25_[-1]_55 chr19:37594990-37595490 8.5e-12 15_[+1]_65 chr14:103104968-10310546 8.5e-12 58_[+1]_22 chr8:16825862-16826362 8.5e-12 2_[-1]_78 chr1:156660148-156660648 9.3e-12 39_[+1]_41 chr1:150235805-150236305 1.5e-11 46_[-1]_34 chr3:134795193-134795693 3.1e-11 13_[-1]_67 chr9:95507787-95508287 9.1e-11 49_[+1]_31 chr1:228781650-228782150 9.1e-11 55_[+1]_25 chr3:194134811-194135311 1.4e-10 27_[-1]_53 chr10:100228810-10022931 1.5e-10 [-1]_80 chr1:42177548-42178048 1.8e-10 8_[-1]_72 chr2:234969768-234970268 3.5e-10 40_[-1]_40 chr19:36604746-36605246 4.6e-10 25_[-1]_55 chr19:37371118-37371618 4.6e-10 74_[+1]_6 chr1:25430092-25430592 9.6e-10 14_[+1]_66 chr12:1605015-1605515 1.8e-09 19_[+1]_61 chr19:36850998-36851498 2.2e-09 44_[+1]_36 chr16:12120417-12120917 3.5e-09 45_[+1]_35 chr9:136631310-136631810 4e-09 9_[-1]_71 chr18:58781564-58782064 5.2e-09 21_[+1]_59 chr1:40691597-40692097 5.8e-08 72_[+1]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGTGTGTGTGTGTGT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGTGTGTGTGTGTGTGT width=20 seqs=63 chr12:57111980-57112480 ( 43) GTGTGTGTGTGTGTGTGTGT 1 chr19:35947339-35947839 ( 61) GTGTGTGTGTGTGTGTGTGT 1 chr10:101442023-10144252 ( 77) GTGTGTGTGTGTGTGTGTGT 1 chr6:111568240-111568740 ( 3) GTGTGTGTGTGTGTGTGTGT 1 chr17:73310534-73311034 ( 11) GTGTGTGTGTGTGTGTGTGT 1 chr1:27489139-27489639 ( 10) GTGTGTGTGTGTGTGTGTGT 1 chr19:39320101-39320601 ( 5) GTGTGTGTGTGTGTGTGTGT 1 chr1:40374328-40374828 ( 71) GTGTGTGTGTGTGTGTGTGT 1 chr1:21345610-21346110 ( 78) GTGTGTGTGTGTGTGTGTGT 1 chr1:100351732-100352232 ( 46) GTGTGTGTGTGTGTGTGTGT 1 chr3:69250036-69250536 ( 57) GTGTGTGTGTGTGTGTGTGT 1 chr6:96924591-96925091 ( 12) GTGTGTGTGTGTGTGTGTGT 1 chr12:106075008-10607550 ( 79) GTGTGTGTGTGTGTGTGTGT 1 chr1:116877961-116878461 ( 24) GTGTGTGTGTGTGTGTGTGT 1 chr19:33796980-33797480 ( 72) GTGTGTGTGTGTGTGTGTGT 1 chr1:161097509-161098009 ( 31) GTGTGTGTGTGTGTGTGTGT 1 chr6:36680103-36680603 ( 7) GTGTGTGTGTGTGTGTGTGT 1 chr11:120347011-12034751 ( 63) GTGTGTGTGTGTGTGTGTGT 1 chr19:53979823-53980323 ( 37) GTGTGTGTGTGTGTGTGTGT 1 chr17:76671166-76671666 ( 32) GTGTGTGTGTGTGTGTGTGT 1 chr22:35840399-35840899 ( 35) GTGTGTGTGTGTGTGTGTGT 1 chr21:35047330-35047830 ( 1) GTGTGTGTGTGTGTGTGTGT 1 chr1:10793917-10794417 ( 62) GTGTGTGTGTGTGTGTGTGT 1 chr19:35819842-35820342 ( 16) GTGTGTGTGTGTGTGTGTGT 1 chr1:208021775-208022275 ( 55) GTGTGTGTGTGTGTGTGTGT 1 chr20:53611363-53611863 ( 20) GTGTGTGTGTGTGTGTGTGT 1 chr6:43702489-43702989 ( 37) GTGTGTGTGTGTGTGTGTGT 1 chr1:27608573-27609073 ( 71) GTGTGTGTGTGTGTGTGTGT 1 chr17:46835825-46836325 ( 73) GTGTGTGTGTGTGTGTGTGT 1 chr15:40092223-40092723 ( 32) GTGTGTGTGTGTGTGTGTGT 1 chr1:156661287-156661787 ( 71) GTGTGTGTGTGTGTGTGTGT 1 chr12:124518909-12451940 ( 1) GTGTGTGTGTGTGTGTGTGT 1 chr10:101830485-10183098 ( 2) GTGTGTGTGTGTGTGTGTGT 1 chr2:241881333-241881833 ( 64) GTGTGTGTGTGTGTGTGTGT 1 chr12:6778720-6779220 ( 2) GTGTGTGTGTGTGTGTGTGT 1 chr17:66200632-66201132 ( 29) GTGTGTGTGTGTGTGTGTGT 1 chr11:73377012-73377512 ( 62) GTGTGTGTGTGTGTGTGTGT 1 chr15:47717548-47718048 ( 23) GTGTGTGTGTGTGTGTGTGT 1 chr19:36837849-36838349 ( 65) GTGTATGTGTGTGTGTGTGT 1 chr5:93582540-93583040 ( 42) GTGTATGTGTGTGTGTGTGT 1 chr20:52972203-52972703 ( 22) GTGTGTGTGTGTTTGTGTGT 1 chr19:47471971-47472471 ( 26) GTGCGTGTGTGTGTGTGTGT 1 chr19:37594990-37595490 ( 16) GTGTGTGTGCGTGTGTGTGT 1 chr14:103104968-10310546 ( 59) GTGTGTGTGCGTGTGTGTGT 1 chr8:16825862-16826362 ( 3) GTGTGTGTGCGTGTGTGTGT 1 chr1:156660148-156660648 ( 40) CTGTGTGTGTGTGTGTGTGT 1 chr1:150235805-150236305 ( 47) GTGTGTGTATGTGTGTGTGT 1 chr3:134795193-134795693 ( 14) GTGCATGTGTGTGTGTGTGT 1 chr9:95507787-95508287 ( 50) GAGTGAGTGTGTGTGTGTGT 1 chr1:228781650-228782150 ( 56) CTGTGTGTGTGTGTGTGTGG 1 chr3:194134811-194135311 ( 28) GTGTGTGAGTGAGTGTGTGT 1 chr10:100228810-10022931 ( 1) GTCCGTGTGTGTGTGTGTGT 1 chr1:42177548-42178048 ( 9) GCGCGTGTGTGTGTGTGTGT 1 chr2:234969768-234970268 ( 41) GTGTGACAGTGTGTGTGTGT 1 chr19:36604746-36605246 ( 26) GTGTGATTGTGTTTGTGTGT 1 chr19:37371118-37371618 ( 75) GTGTCACTGTGTGTGTGTGT 1 chr1:25430092-25430592 ( 15) GTGTGTCTGTGTGCGTGTGG 1 chr12:1605015-1605515 ( 20) GTGTGTGTGAGAGTGAGTGT 1 chr19:36850998-36851498 ( 45) GTGTGTGTGTGTGTGTTTAC 1 chr16:12120417-12120917 ( 46) GTGTGTCTGTGTTTATGTTT 1 chr9:136631310-136631810 ( 10) ATGTATGTGTGTATGTGTGG 1 chr18:58781564-58782064 ( 22) ATGTGCCTGTGTGTGTGTAT 1 chr1:40691597-40692097 ( 73) GTGTGAGTGTGCGGGAGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGTGTGTGTGTGTGT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 48600 bayes= 11.3202 E= 2.1e-384 -280 -313 175 -1262 -380 -413 -1262 213 -1262 -413 182 -1262 -1262 -213 -1262 208 -180 -413 172 -1262 -148 -413 -1262 203 -1262 -181 170 -380 -280 -1262 -1262 213 -380 -1262 182 -1262 -380 -255 -1262 208 -1262 -1262 184 -1262 -280 -413 -1262 211 -380 -1262 175 -221 -1262 -413 -413 213 -380 -1262 182 -1262 -280 -1262 -1262 213 -1262 -1262 182 -380 -1262 -1262 -1262 218 -280 -1262 175 -280 -1262 -413 -255 208 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGTGTGTGTGTGTGT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 63 E= 2.1e-384 0.031746 0.031746 0.936508 0.000000 0.015873 0.015873 0.000000 0.968254 0.000000 0.015873 0.984127 0.000000 0.000000 0.063492 0.000000 0.936508 0.063492 0.015873 0.920635 0.000000 0.079365 0.015873 0.000000 0.904762 0.000000 0.079365 0.904762 0.015873 0.031746 0.000000 0.000000 0.968254 0.015873 0.000000 0.984127 0.000000 0.015873 0.047619 0.000000 0.936508 0.000000 0.000000 1.000000 0.000000 0.031746 0.015873 0.000000 0.952381 0.015873 0.000000 0.936508 0.047619 0.000000 0.015873 0.015873 0.968254 0.015873 0.000000 0.984127 0.000000 0.031746 0.000000 0.000000 0.968254 0.000000 0.000000 0.984127 0.015873 0.000000 0.000000 0.000000 1.000000 0.031746 0.000000 0.936508 0.031746 0.000000 0.015873 0.047619 0.936508 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGTGTGTGTGTGTGT MEME-1 regular expression -------------------------------------------------------------------------------- GTGTGTGTGTGTGTGTGTGT -------------------------------------------------------------------------------- Time 406.92 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACACACACA MEME-2 width = 12 sites = 55 llr = 713 E-value = 5.9e-079 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACACACACA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :8:9:9:a:8:8 pos.-specific C a:9:9:a:a:91 probability G :2:1:1:::11: matrix T ::1::::::1:1 bits 2.2 * 2.0 * 1.7 * *** 1.5 * ** **** Relative 1.3 ************ Entropy 1.1 ************ (18.7 bits) 0.9 ************ 0.7 ************ 0.4 ************ 0.2 ************ 0.0 ------------ Multilevel CACACACACACA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACACACA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------ chr12:57111980-57112480 + 64 5.50e-08 cacacacaca cacacacacaca cacacacaGT chr19:35947339-35947839 - 82 5.50e-08 ACACACA CACACACACACA CACACACACA chr6:111568240-111568740 - 24 5.50e-08 CACACACACA CACACACACACA CACACACACA chr7:150359969-150360469 + 47 5.50e-08 acaaacacca cacacacacaca gcccaccaca chr17:73310534-73311034 + 32 5.50e-08 cacacacaca cacacacacaca cacacacaca chr19:36837849-36838349 + 86 5.50e-08 cacatacaca cacacacacaca AGC chr1:27489139-27489639 + 31 5.50e-08 cacacacaca cacacacacaca cacacacaca chr19:39320101-39320601 + 26 5.50e-08 cacacacaca cacacacacaca cacaAATGGA chr6:96924591-96925091 + 33 5.50e-08 cacacacaca cacacacacaca cTTTCGCACA chr14:103104968-10310546 - 17 5.50e-08 CAGACACAAA CACACACACACA CTCCTCACCT chr1:116877961-116878461 - 45 5.50e-08 TCATCACACA CACACACACACA CACACACACA chr1:161097509-161098009 - 52 5.50e-08 AGGTGACACA CACACACACACA CACACACACA chr6:36680103-36680603 - 28 5.50e-08 GACACAGACA CACACACACACA CACACACACA chr8:16825862-16826362 + 36 5.50e-08 cacagacata cacacacacaca caTTAAAAAC chr11:120347011-12034751 - 84 5.50e-08 TGCTA CACACACACACA CACACACACA chr19:35819842-35820342 + 37 5.50e-08 cacacacaca cacacacacaca cacacacaca chr1:208021775-208022275 - 76 5.50e-08 CACACACACA CACACACACACA CACACACACA chr1:42177548-42178048 + 49 5.50e-08 tcacacacag cacacacacaca gaaacaAAAG chr20:52972203-52972703 - 3 5.50e-08 CACACCCTCG CACACACACACA AG chr2:241881333-241881833 - 85 5.50e-08 CACA CACACACACACA CACACACACA chr15:47717548-47718048 - 87 5.50e-08 CA CACACACACACA CAGCGATTCG chr3:194134811-194135311 + 51 1.24e-07 cacacacgca cgcacacacaca TCCTCCCGGC chr1:10793917-10794417 - 19 1.24e-07 CACACACACG CGCACACACACA CGTCGCCGTC chr15:40092223-40092723 + 15 1.24e-07 AGTGCAAaca cgcacacacaca gactcacaca chr22:35840399-35840899 - 18 1.94e-07 CACACACGCA CACACGCACACA CGCGTGCGCA chr21:35047330-35047830 + 22 3.73e-07 cacacacaca cacacacacact ctctctctct chr2:234969768-234970268 + 80 3.73e-07 tacacttact cacacacactca tacacacac chr17:66200632-66201132 + 87 3.73e-07 atacacaaag cacacacactca aa chr1:150235805-150236305 + 16 4.86e-07 ctagcgcgcg cacacacacgca cgcacgcgcg chr1:156660148-156660648 - 83 4.86e-07 CACACT CACACACACGCA TGCGCGTACA chr19:47471971-47472471 + 47 4.86e-07 cacacgcaca cacacacacGCA CGCAGTCTCC chr10:101830485-10183098 + 82 4.86e-07 CACGCCTCCC CATACACACACA CACGCGC chr1:228781650-228782150 - 25 4.86e-07 ACACACAAAC CATACACACACA CAGTCCACAC chr22:49975428-49975928 - 38 6.10e-07 ACACACACAC CACACACACACC ACACATGATA chr6:43702489-43702989 - 60 6.97e-07 ACACAGGGGA CACACACACAAA CACACACACA chr12:1605015-1605515 - 60 6.97e-07 CTCACACAGG CACAAACACACA CCACCCTCTG chr19:40090483-40090983 + 54 1.11e-06 CTCTGATACC CGCGCACACACA CGCCTGGGGA chr15:70097482-70097982 + 86 1.29e-06 ACCCCCAAAa cacacacaccca aca chr10:5548763-5549263 + 3 1.29e-06 tg cacacacacacG CCTCCTGGCA chr3:134795193-134795693 + 63 1.66e-06 cgcaccgccc cacgcgcacaca ctcctgccca chr9:95507787-95508287 - 87 2.01e-06 AA CACACACACTCT CTTCCTCTCT chr11:73377012-73377512 - 30 2.79e-06 CACTTGACCC CACACGCACACC ATGGCGCCAG chr5:1950665-1951165 - 67 2.90e-06 CAGCAGACGG CACAAGCACACA GAGCAGATGA chr18:58781564-58782064 - 87 3.75e-06 CA CGCACATACACA CCACACACAC chr10:101442023-10144252 - 64 4.05e-06 CACACACACA CATACACACAGA GACAGAGAGA chr1:40257832-40258332 - 68 4.05e-06 CTGGCAGTGT CACAGACACACT CTTCCCCTTG chr1:29236645-29237145 - 45 4.05e-06 GCACAGAACT CACGGACACACA ACATTCGCAG chr1:100351732-100352232 - 67 4.88e-06 AGGGCGCGCG CGCGCGCACACA CACACACACA chr19:53979823-53980323 - 58 4.88e-06 CTCACGCGCG CGCGCGCACACA CACACACACA chr5:93582540-93583040 - 29 5.84e-06 CACATACACA CACACACACTTA CGCTCACACC chr1:40374328-40374828 - 54 6.25e-06 CACACACGCA CGCACGCACGCA CGCAATGCAG chr3:69250036-69250536 - 44 8.04e-06 CACACACACA CGCACACACAGT GGTTTCGCCT chr19:36488964-36489464 + 62 9.58e-06 TCCCCACAGC CGCACACACAAT GCCGCACGTG chr19:37594990-37595490 - 39 2.34e-05 CTCGGACACG CGCGCGCACAGA CCCACACACA chr8:25458878-25459378 - 42 2.86e-05 TTCTCCAGTC CGCGCACACTCC GAGCGCTCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACACACA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:57111980-57112480 5.5e-08 63_[+2]_25 chr19:35947339-35947839 5.5e-08 81_[-2]_7 chr6:111568240-111568740 5.5e-08 23_[-2]_65 chr7:150359969-150360469 5.5e-08 46_[+2]_42 chr17:73310534-73311034 5.5e-08 31_[+2]_57 chr19:36837849-36838349 5.5e-08 85_[+2]_3 chr1:27489139-27489639 5.5e-08 30_[+2]_58 chr19:39320101-39320601 5.5e-08 25_[+2]_63 chr6:96924591-96925091 5.5e-08 32_[+2]_56 chr14:103104968-10310546 5.5e-08 16_[-2]_72 chr1:116877961-116878461 5.5e-08 44_[-2]_44 chr1:161097509-161098009 5.5e-08 51_[-2]_37 chr6:36680103-36680603 5.5e-08 27_[-2]_61 chr8:16825862-16826362 5.5e-08 35_[+2]_53 chr11:120347011-12034751 5.5e-08 83_[-2]_5 chr19:35819842-35820342 5.5e-08 36_[+2]_52 chr1:208021775-208022275 5.5e-08 75_[-2]_13 chr1:42177548-42178048 5.5e-08 48_[+2]_40 chr20:52972203-52972703 5.5e-08 2_[-2]_86 chr2:241881333-241881833 5.5e-08 84_[-2]_4 chr15:47717548-47718048 5.5e-08 86_[-2]_2 chr3:194134811-194135311 1.2e-07 50_[+2]_38 chr1:10793917-10794417 1.2e-07 18_[-2]_70 chr15:40092223-40092723 1.2e-07 14_[+2]_74 chr22:35840399-35840899 1.9e-07 17_[-2]_71 chr21:35047330-35047830 3.7e-07 21_[+2]_67 chr2:234969768-234970268 3.7e-07 79_[+2]_9 chr17:66200632-66201132 3.7e-07 86_[+2]_2 chr1:150235805-150236305 4.9e-07 15_[+2]_73 chr1:156660148-156660648 4.9e-07 82_[-2]_6 chr19:47471971-47472471 4.9e-07 46_[+2]_42 chr10:101830485-10183098 4.9e-07 81_[+2]_7 chr1:228781650-228782150 4.9e-07 24_[-2]_64 chr22:49975428-49975928 6.1e-07 37_[-2]_51 chr6:43702489-43702989 7e-07 59_[-2]_29 chr12:1605015-1605515 7e-07 59_[-2]_29 chr19:40090483-40090983 1.1e-06 53_[+2]_35 chr15:70097482-70097982 1.3e-06 85_[+2]_3 chr10:5548763-5549263 1.3e-06 2_[+2]_86 chr3:134795193-134795693 1.7e-06 62_[+2]_26 chr9:95507787-95508287 2e-06 86_[-2]_2 chr11:73377012-73377512 2.8e-06 29_[-2]_59 chr5:1950665-1951165 2.9e-06 66_[-2]_22 chr18:58781564-58782064 3.8e-06 86_[-2]_2 chr10:101442023-10144252 4e-06 63_[-2]_25 chr1:40257832-40258332 4e-06 67_[-2]_21 chr1:29236645-29237145 4e-06 44_[-2]_44 chr1:100351732-100352232 4.9e-06 66_[-2]_22 chr19:53979823-53980323 4.9e-06 57_[-2]_31 chr5:93582540-93583040 5.8e-06 28_[-2]_60 chr1:40374328-40374828 6.2e-06 53_[-2]_35 chr3:69250036-69250536 8e-06 43_[-2]_45 chr19:36488964-36489464 9.6e-06 61_[+2]_27 chr19:37594990-37595490 2.3e-05 38_[-2]_50 chr8:25458878-25459378 2.9e-05 41_[-2]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACACACA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACACACACA width=12 seqs=55 chr12:57111980-57112480 ( 64) CACACACACACA 1 chr19:35947339-35947839 ( 82) CACACACACACA 1 chr6:111568240-111568740 ( 24) CACACACACACA 1 chr7:150359969-150360469 ( 47) CACACACACACA 1 chr17:73310534-73311034 ( 32) CACACACACACA 1 chr19:36837849-36838349 ( 86) CACACACACACA 1 chr1:27489139-27489639 ( 31) CACACACACACA 1 chr19:39320101-39320601 ( 26) CACACACACACA 1 chr6:96924591-96925091 ( 33) CACACACACACA 1 chr14:103104968-10310546 ( 17) CACACACACACA 1 chr1:116877961-116878461 ( 45) CACACACACACA 1 chr1:161097509-161098009 ( 52) CACACACACACA 1 chr6:36680103-36680603 ( 28) CACACACACACA 1 chr8:16825862-16826362 ( 36) CACACACACACA 1 chr11:120347011-12034751 ( 84) CACACACACACA 1 chr19:35819842-35820342 ( 37) CACACACACACA 1 chr1:208021775-208022275 ( 76) CACACACACACA 1 chr1:42177548-42178048 ( 49) CACACACACACA 1 chr20:52972203-52972703 ( 3) CACACACACACA 1 chr2:241881333-241881833 ( 85) CACACACACACA 1 chr15:47717548-47718048 ( 87) CACACACACACA 1 chr3:194134811-194135311 ( 51) CGCACACACACA 1 chr1:10793917-10794417 ( 19) CGCACACACACA 1 chr15:40092223-40092723 ( 15) CGCACACACACA 1 chr22:35840399-35840899 ( 18) CACACGCACACA 1 chr21:35047330-35047830 ( 22) CACACACACACT 1 chr2:234969768-234970268 ( 80) CACACACACTCA 1 chr17:66200632-66201132 ( 87) CACACACACTCA 1 chr1:150235805-150236305 ( 16) CACACACACGCA 1 chr1:156660148-156660648 ( 83) CACACACACGCA 1 chr19:47471971-47472471 ( 47) CACACACACGCA 1 chr10:101830485-10183098 ( 82) CATACACACACA 1 chr1:228781650-228782150 ( 25) CATACACACACA 1 chr22:49975428-49975928 ( 38) CACACACACACC 1 chr6:43702489-43702989 ( 60) CACACACACAAA 1 chr12:1605015-1605515 ( 60) CACAAACACACA 1 chr19:40090483-40090983 ( 54) CGCGCACACACA 1 chr15:70097482-70097982 ( 86) CACACACACCCA 1 chr10:5548763-5549263 ( 3) CACACACACACG 1 chr3:134795193-134795693 ( 63) CACGCGCACACA 1 chr9:95507787-95508287 ( 87) CACACACACTCT 1 chr11:73377012-73377512 ( 30) CACACGCACACC 1 chr5:1950665-1951165 ( 67) CACAAGCACACA 1 chr18:58781564-58782064 ( 87) CGCACATACACA 1 chr10:101442023-10144252 ( 64) CATACACACAGA 1 chr1:40257832-40258332 ( 68) CACAGACACACT 1 chr1:29236645-29237145 ( 45) CACGGACACACA 1 chr1:100351732-100352232 ( 67) CGCGCGCACACA 1 chr19:53979823-53980323 ( 58) CGCGCGCACACA 1 chr5:93582540-93583040 ( 29) CACACACACTTA 1 chr1:40374328-40374828 ( 54) CGCACGCACGCA 1 chr3:69250036-69250536 ( 44) CGCACACACAGT 1 chr19:36488964-36489464 ( 62) CGCACACACAAT 1 chr19:37594990-37595490 ( 39) CGCGCGCACAGA 1 chr8:25458878-25459378 ( 42) CGCGCACACTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACACACA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 12 n= 53400 bayes= 11.8763 E= 5.9e-079 -1243 184 -1243 -1243 182 -1243 -35 -1243 -1243 176 -1243 -202 198 -1243 -113 -1243 -260 173 -294 -1243 195 -1243 -94 -1243 -1243 182 -1243 -360 218 -1243 -1243 -1243 -1243 184 -1243 -1243 189 -394 -194 -128 -260 168 -235 -360 192 -235 -394 -128 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACACACA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 12 nsites= 55 E= 5.9e-079 0.000000 1.000000 0.000000 0.000000 0.781818 0.000000 0.218182 0.000000 0.000000 0.945455 0.000000 0.054545 0.872727 0.000000 0.127273 0.000000 0.036364 0.927273 0.036364 0.000000 0.854545 0.000000 0.145455 0.000000 0.000000 0.981818 0.000000 0.018182 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.818182 0.018182 0.072727 0.090909 0.036364 0.890909 0.054545 0.018182 0.836364 0.054545 0.018182 0.090909 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACACACA MEME-2 regular expression -------------------------------------------------------------------------------- C[AG]CACACACACA -------------------------------------------------------------------------------- Time 765.36 secs. ******************************************************************************** ******************************************************************************** MOTIF GYAYGCYGYCACCARGTGGCGG MEME-3 width = 22 sites = 24 llr = 486 E-value = 4.8e-068 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYAYGCYGYCACCARGTGGCGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::9:21::::a::a41:1:12: pos.-specific C :4:6:93:5a:aa:1::::8:: probability G a:::8::a::::::5929a:89 matrix T :513::6:4:::::::7::1:1 bits 2.2 * 2.0 * * 1.7 * * ***** * 1.5 * * * ***** * * Relative 1.3 * * * * ***** * ** * Entropy 1.1 * * * * ***** * ** ** (29.2 bits) 0.9 ****** ******* ******* 0.7 ********************** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel GTACGCTGCCACCAGGTGGCGG consensus C T C T A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAYGCYGYCACCARGTGGCGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr19:4208697-4209197 + 38 6.81e-13 TACCTTCAGG GTATGCTGCCACCAAGTGGCGG CAGTGTGCTC chr1:25520418-25520918 - 20 1.19e-12 TGTGACTTTA GTATGCTGCCACCAGGTGGCGG TGTAATGTGG chr7:138738641-138739141 - 64 2.68e-12 TTGGCCCAGT GCATGCTGCCACCAGGTGGCGG CCTTGTGCTC chr1:22674069-22674569 + 46 4.57e-12 TCTACTTGGG GTACACTGCCACCAGGTGGCGG TAGGCACTTT chr19:4207117-4207617 + 38 6.92e-12 TATGCTTGAG GTATGCTGCCACCAAGTGGCAG TATCTCAGGC chr20:60137585-60138085 + 46 8.05e-12 TGAAATGTGG GTATGCTGTCACCAGGTGGCAG CAGCATCCAC chr11:723184-723684 + 42 1.33e-11 AAACATATGG GTACGCTGCCACCAGGTGGTGG CAAGTGCATT chr12:113383829-11338432 - 18 1.33e-11 CACAGCCTAG GCATGCTGCCACCAAGTGGCAG TACTTCATCA chr10:97117306-97117806 - 60 2.57e-11 TTTACCCCTG GTACACTGTCACCAGGTGGCAG TAGTATGCTA chr2:240982820-240983320 + 33 3.56e-11 GGAGGGCAGG GTACGCTGTCACCAGGAGGCGG TGAACAGGCC chr16:1181223-1181723 + 71 5.19e-11 CGGTGTGGCT GCACGCTGCCACCAAGTGGCTG GCAGGGCC chr22:27766628-27767128 + 27 7.36e-11 GGAGTTTGTA GTACGCTGTCACCAAGGGGAGG CAACACTATT chr19:770207-770707 + 6 8.88e-11 CCGAT GCACGCTGCCACCAGAGGGCGG CAAACACCAA chr19:7944140-7944640 + 24 9.66e-11 TCCATTCGAA GAATGCCGCCACCAGGTGGCGG TATTTTAACA chr15:67863349-67863849 + 24 1.93e-10 TGTAACTTTC GCACGCCGCCACCAGAGGGCGG CGGCTCCGCG chr9:132193335-132193835 - 45 3.04e-10 TGGTTTCTCA GTACGCTGGCACCAAGTGGCGT CACACTGCGT chr19:10394952-10395452 + 8 5.55e-10 AGAACAG GCACAGCGTCACCAAGTGGCGG CCTCATGGCA chr12:113318868-11331936 + 17 5.55e-10 CAGACGGGGT GCACGCCGTCACCAAGTGGTGT CCTGGTGCAG chr6:149963559-149964059 + 50 2.60e-09 CGGGGCCCGC GCACGCCGCCACCAAGCCGCGG GGGCGGGTCG chr7:435508-436008 - 17 3.67e-09 CTCATTTCGC GTACGCCGTCACCACAGAGCGG CATCTTGTTT chrX:47212925-47213425 + 42 9.99e-09 ACCCCTTGCC GCACCACGTCACCAGGTGGGGG CCTGCATCCG chr1:3403653-3404153 - 28 2.17e-08 CGGGTGGAGG GTTTGCCGTCCCCAGGGAGCGG TGCGGGGATG chr19:14396688-14397188 + 48 3.27e-08 TGAAGGTGAA GTTGAAGGTCACCAAGTGGCGG CATGTGCAAT chr19:35931572-35932072 - 26 5.78e-08 CGGAGCATGA TCACTCAGCCACCACGTGGAGG CAGCAACGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAYGCYGYCACCARGTGGCGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:4208697-4209197 6.8e-13 37_[+3]_41 chr1:25520418-25520918 1.2e-12 19_[-3]_59 chr7:138738641-138739141 2.7e-12 63_[-3]_15 chr1:22674069-22674569 4.6e-12 45_[+3]_33 chr19:4207117-4207617 6.9e-12 37_[+3]_41 chr20:60137585-60138085 8e-12 45_[+3]_33 chr11:723184-723684 1.3e-11 41_[+3]_37 chr12:113383829-11338432 1.3e-11 17_[-3]_61 chr10:97117306-97117806 2.6e-11 59_[-3]_19 chr2:240982820-240983320 3.6e-11 32_[+3]_46 chr16:1181223-1181723 5.2e-11 70_[+3]_8 chr22:27766628-27767128 7.4e-11 26_[+3]_52 chr19:770207-770707 8.9e-11 5_[+3]_73 chr19:7944140-7944640 9.7e-11 23_[+3]_55 chr15:67863349-67863849 1.9e-10 23_[+3]_55 chr9:132193335-132193835 3e-10 44_[-3]_34 chr19:10394952-10395452 5.5e-10 7_[+3]_71 chr12:113318868-11331936 5.5e-10 16_[+3]_62 chr6:149963559-149964059 2.6e-09 49_[+3]_29 chr7:435508-436008 3.7e-09 16_[-3]_62 chrX:47212925-47213425 1e-08 41_[+3]_37 chr1:3403653-3404153 2.2e-08 27_[-3]_51 chr19:14396688-14397188 3.3e-08 47_[+3]_31 chr19:35931572-35932072 5.8e-08 25_[-3]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAYGCYGYCACCARGTGGCGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYAYGCYGYCACCARGTGGCGG width=22 seqs=24 chr19:4208697-4209197 ( 38) GTATGCTGCCACCAAGTGGCGG 1 chr1:25520418-25520918 ( 20) GTATGCTGCCACCAGGTGGCGG 1 chr7:138738641-138739141 ( 64) GCATGCTGCCACCAGGTGGCGG 1 chr1:22674069-22674569 ( 46) GTACACTGCCACCAGGTGGCGG 1 chr19:4207117-4207617 ( 38) GTATGCTGCCACCAAGTGGCAG 1 chr20:60137585-60138085 ( 46) GTATGCTGTCACCAGGTGGCAG 1 chr11:723184-723684 ( 42) GTACGCTGCCACCAGGTGGTGG 1 chr12:113383829-11338432 ( 18) GCATGCTGCCACCAAGTGGCAG 1 chr10:97117306-97117806 ( 60) GTACACTGTCACCAGGTGGCAG 1 chr2:240982820-240983320 ( 33) GTACGCTGTCACCAGGAGGCGG 1 chr16:1181223-1181723 ( 71) GCACGCTGCCACCAAGTGGCTG 1 chr22:27766628-27767128 ( 27) GTACGCTGTCACCAAGGGGAGG 1 chr19:770207-770707 ( 6) GCACGCTGCCACCAGAGGGCGG 1 chr19:7944140-7944640 ( 24) GAATGCCGCCACCAGGTGGCGG 1 chr15:67863349-67863849 ( 24) GCACGCCGCCACCAGAGGGCGG 1 chr9:132193335-132193835 ( 45) GTACGCTGGCACCAAGTGGCGT 1 chr19:10394952-10395452 ( 8) GCACAGCGTCACCAAGTGGCGG 1 chr12:113318868-11331936 ( 17) GCACGCCGTCACCAAGTGGTGT 1 chr6:149963559-149964059 ( 50) GCACGCCGCCACCAAGCCGCGG 1 chr7:435508-436008 ( 17) GTACGCCGTCACCACAGAGCGG 1 chrX:47212925-47213425 ( 42) GCACCACGTCACCAGGTGGGGG 1 chr1:3403653-3404153 ( 28) GTTTGCCGTCCCCAGGGAGCGG 1 chr19:14396688-14397188 ( 48) GTTGAAGGTCACCAAGTGGCGG 1 chr19:35931572-35932072 ( 26) TCACTCAGCCACCACGTGGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAYGCYGYCACCARGTGGCGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 10.6057 E= 4.8e-068 -1123 -1123 178 -241 -241 58 -1123 129 205 -1123 -1123 -141 -1123 116 -274 59 -41 -274 143 -241 -141 165 -274 -1123 -241 26 -274 140 -1123 -1123 184 -1123 -1123 96 -274 91 -1123 184 -1123 -1123 212 -274 -1123 -1123 -1123 184 -1123 -1123 -1123 184 -1123 -1123 218 -1123 -1123 -1123 91 -174 84 -1123 -82 -1123 165 -1123 -241 -274 -42 168 -141 -274 165 -1123 -1123 -1123 184 -1123 -141 150 -274 -141 -41 -1123 150 -241 -1123 -1123 172 -141 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAYGCYGYCACCARGTGGCGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 24 E= 4.8e-068 0.000000 0.000000 0.958333 0.041667 0.041667 0.416667 0.000000 0.541667 0.916667 0.000000 0.000000 0.083333 0.000000 0.625000 0.041667 0.333333 0.166667 0.041667 0.750000 0.041667 0.083333 0.875000 0.041667 0.000000 0.041667 0.333333 0.041667 0.583333 0.000000 0.000000 1.000000 0.000000 0.000000 0.541667 0.041667 0.416667 0.000000 1.000000 0.000000 0.000000 0.958333 0.041667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.416667 0.083333 0.500000 0.000000 0.125000 0.000000 0.875000 0.000000 0.041667 0.041667 0.208333 0.708333 0.083333 0.041667 0.875000 0.000000 0.000000 0.000000 1.000000 0.000000 0.083333 0.791667 0.041667 0.083333 0.166667 0.000000 0.791667 0.041667 0.000000 0.000000 0.916667 0.083333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAYGCYGYCACCARGTGGCGG MEME-3 regular expression -------------------------------------------------------------------------------- G[TC]A[CT]GC[TC]G[CT]CACCA[GA]G[TG]GGCGG -------------------------------------------------------------------------------- Time 1116.47 secs. ******************************************************************************** ******************************************************************************** MOTIF TCYYTCYCTCYCYYYCTCYCTC MEME-4 width = 22 sites = 41 llr = 613 E-value = 4.8e-058 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCYYTCYCTCYCYYYCTCYCTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::1:::::::1::::1::1::: pos.-specific C :946274939484648183739 probability G 2::::::::1::::111:1::: matrix T 815473517:52545:915271 bits 2.2 2.0 1.7 1.5 Relative 1.3 ** ** * * Entropy 1.1 ** *** *** ** * (21.6 bits) 0.9 ** ******* *** *** ** 0.7 ** *************** *** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel TCTCTCTCTCTCTCTCTCTCTC consensus G CTCTC C C CTC C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYYTCYCTCYCYYYCTCYCTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr1:155244582-155245082 - 68 4.90e-14 CGCCGGCTCC TCTCTCTCTCTCTCTCTCTCTC GCTCGCTCTC chr17:48728678-48729178 + 2 4.90e-14 c tctctctctctctctctctctc tctctgtctc chr1:161097509-161098009 + 2 4.90e-14 c tctctctctctctctctctctc tctctgtgtg chr21:35047330-35047830 + 35 4.90e-14 acacacactc tctctctctctctctctctctc tctctctctc chr10:15434119-15434619 + 41 8.78e-14 cccccccttc tctttctctctctctctctctc ttctctctct chr11:120347011-12034751 + 34 2.15e-11 tctctctctg tttctctctctctctctctctc tGTCtgtgtg chr10:101442023-10144252 + 42 9.73e-11 AATTAGAAtc tctctctctctctctctctgtc tctgtgtgta chr12:54032580-54033080 + 47 1.62e-10 cttccctctt tctctctctcactccctctccc cctTGGTTGG chr21:32771769-32772269 - 1 2.64e-10 GAGGTGTGGG GCTCTCTCTCTCTCTCTCGCTC chr1:234723932-234724432 - 3 4.88e-10 ACCTCCCTCC TCCCTTCCTCCCTCCCTCTCCC TC chr1:179882559-179883059 - 28 2.90e-09 GGTAGTACGC GCTTTCTCTCACTTCCTCTTTC GCAGAATCGG chr19:49580455-49580955 + 22 3.72e-09 CTTGCTCAAG TCCTCTCTTCTCTTTCTCTCTC CGGAAACGTG chr17:45148332-45148832 - 24 4.21e-09 CGCCTCCTCC TCTTTTCCTCCCTCCCTCCTCC CCCTTCCCAC chr17:47649679-47650179 + 23 1.34e-08 tccctccgcc ttcctccctccctcgctccctc cctgcgcgcc chr6:85642962-85643462 + 79 2.29e-08 gcacgctccc tcactccctccctcgctcgctc chr21:25607280-25607780 + 24 4.64e-08 CGCGCGCAAG TCCTTCTCCGCCCTCCTCCCCC GGAAACCGAA chr12:54359114-54359614 - 45 4.64e-08 TCGTTCGCAC GCTCTCTCTCTTTCGCTGTCTC TTACAGGCAG chr22:20495991-20496491 + 69 5.11e-08 ttctctcctc tcttactccccccctctcattc cctccctcct chr20:48921192-48921692 + 9 5.63e-08 GTTCCCCT TCCTTTCCTCATCTCCTCTCTT ACCCACGTCA chr14:103520922-10352142 + 22 5.63e-08 GGCCGGCCcc tccctcctcctcctcctcctcc tcGCCGCGAG chr16:234305-234805 - 43 6.80e-08 CTGCGTCCTC GCTCCCCTCCTCCTCCTCTCCC GACCTTGTCC chr10:3314606-3315106 - 40 9.83e-08 TCTCTGTGAG TCACCCTCCCCTTCCCTCACTC TGAAGTCACT chr19:39410051-39410551 + 26 1.40e-07 TGCCCCGCAC TCCTCCCTCCTCCCTCTCACTT CCCTCTTCTC chr16:71808662-71809162 + 73 1.53e-07 TGAGGAAACT TCGCTCCCTGTCCTCCTCTCCT GGTCGT chr1:109984473-109984973 + 19 2.75e-07 ACGACAGAGT GCCCTTTCTCCCCGCCTCTTCC CCCTCCCGGG chr19:47113460-47113960 - 5 2.75e-07 TAGCCTGAAT TCCTTCCCTCCCATTCTCCCAC CTAA chr5:173328066-173328566 + 9 4.10e-07 ccttcgcc gcttcccctcctcctcccactc ttcctttttg chr19:40715554-40716054 + 70 4.10e-07 GAAAACCACC TCCCATCCTATCTTTCTTTCTC tgtgtgtgt chr19:28425257-28425757 - 8 4.43e-07 CGTTTCCAGT TCTTTCTCTCACCCTGTTTATT ACCACAA chr1:26695352-26695852 + 53 4.43e-07 CCGCCGCGGC TTGTTCTCTCCCCTCCTCCTTT GTGAAGGGAA chr12:56158182-56158682 - 56 4.78e-07 CCCCCACCCG TCTCTTCCTGCCTCTCGTCCCC AATCCTGCCC chr17:7836701-7837201 + 68 5.56e-07 TCCCGTGCCA TCTCTTTCCCCTCTCCCTTCCC GTGGTCTTAG chr20:58650953-58651453 - 46 7.47e-07 TTCCCCCCTG GCCCTCTTCCTGTCCGTCCCTC GCGAGTGCCC chr1:183471806-183472306 - 63 1.14e-06 TACACTCAAA GTCTTCCCCCTTCTTATCACTC CTGCCGATTT chr10:102420960-10242146 - 36 1.31e-06 TCCCTCAGGT TCCTCTTCCCTCTCGGCCCCTC CGGTGCTCGG chr5:83097818-83098318 - 78 1.50e-06 C TCATTTCCTCTGCTTATCTTTT ACAAATACCA chr17:42388550-42389050 - 22 1.71e-06 CCGGTCATCT TCCCTCCCTCCCCCCGGGCTTC TGTGCCCAAG chr10:93702404-93702904 - 70 1.82e-06 CGGGCCGTT TCTCCCGCTGCCCTTGTTTCCC GGAGCTGTTC chr10:17201438-17201938 + 46 2.66e-06 CCGGTCCGTC GCTCCTCCTCCCTCCATCGCGC CGCTCCCTCA chr20:38435028-38435528 - 67 4.05e-06 TCCTTCGCCG TCCCTCGCCGTCCTTCGCCATC GCACGCCACC chr15:70097482-70097982 + 28 4.54e-06 GAGCTCTACG GCTTCCTTCCTTCCCCTCGGCC CGGCTCTCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYYTCYCTCYCYYYCTCYCTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:155244582-155245082 4.9e-14 67_[-4]_11 chr17:48728678-48729178 4.9e-14 1_[+4]_77 chr1:161097509-161098009 4.9e-14 1_[+4]_77 chr21:35047330-35047830 4.9e-14 34_[+4]_44 chr10:15434119-15434619 8.8e-14 40_[+4]_38 chr11:120347011-12034751 2.1e-11 33_[+4]_45 chr10:101442023-10144252 9.7e-11 41_[+4]_37 chr12:54032580-54033080 1.6e-10 46_[+4]_32 chr21:32771769-32772269 2.6e-10 [-4]_78 chr1:234723932-234724432 4.9e-10 2_[-4]_76 chr1:179882559-179883059 2.9e-09 27_[-4]_51 chr19:49580455-49580955 3.7e-09 21_[+4]_57 chr17:45148332-45148832 4.2e-09 23_[-4]_55 chr17:47649679-47650179 1.3e-08 22_[+4]_56 chr6:85642962-85643462 2.3e-08 78_[+4] chr21:25607280-25607780 4.6e-08 23_[+4]_55 chr12:54359114-54359614 4.6e-08 44_[-4]_34 chr22:20495991-20496491 5.1e-08 68_[+4]_10 chr20:48921192-48921692 5.6e-08 8_[+4]_70 chr14:103520922-10352142 5.6e-08 21_[+4]_57 chr16:234305-234805 6.8e-08 42_[-4]_36 chr10:3314606-3315106 9.8e-08 39_[-4]_39 chr19:39410051-39410551 1.4e-07 25_[+4]_53 chr16:71808662-71809162 1.5e-07 72_[+4]_6 chr1:109984473-109984973 2.8e-07 18_[+4]_60 chr19:47113460-47113960 2.8e-07 4_[-4]_74 chr5:173328066-173328566 4.1e-07 8_[+4]_70 chr19:40715554-40716054 4.1e-07 69_[+4]_9 chr19:28425257-28425757 4.4e-07 7_[-4]_71 chr1:26695352-26695852 4.4e-07 52_[+4]_26 chr12:56158182-56158682 4.8e-07 55_[-4]_23 chr17:7836701-7837201 5.6e-07 67_[+4]_11 chr20:58650953-58651453 7.5e-07 45_[-4]_33 chr1:183471806-183472306 1.1e-06 62_[-4]_16 chr10:102420960-10242146 1.3e-06 35_[-4]_43 chr5:83097818-83098318 1.5e-06 77_[-4]_1 chr17:42388550-42389050 1.7e-06 21_[-4]_57 chr10:93702404-93702904 1.8e-06 69_[-4]_9 chr10:17201438-17201938 2.7e-06 45_[+4]_33 chr20:38435028-38435528 4e-06 66_[-4]_12 chr15:70097482-70097982 4.5e-06 27_[+4]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYYTCYCTCYCYYYCTCYCTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCYYTCYCTCYCYYYCTCYCTC width=22 seqs=41 chr1:155244582-155245082 ( 68) TCTCTCTCTCTCTCTCTCTCTC 1 chr17:48728678-48729178 ( 2) TCTCTCTCTCTCTCTCTCTCTC 1 chr1:161097509-161098009 ( 2) TCTCTCTCTCTCTCTCTCTCTC 1 chr21:35047330-35047830 ( 35) TCTCTCTCTCTCTCTCTCTCTC 1 chr10:15434119-15434619 ( 41) TCTTTCTCTCTCTCTCTCTCTC 1 chr11:120347011-12034751 ( 34) TTTCTCTCTCTCTCTCTCTCTC 1 chr10:101442023-10144252 ( 42) TCTCTCTCTCTCTCTCTCTGTC 1 chr12:54032580-54033080 ( 47) TCTCTCTCTCACTCCCTCTCCC 1 chr21:32771769-32772269 ( 1) GCTCTCTCTCTCTCTCTCGCTC 1 chr1:234723932-234724432 ( 3) TCCCTTCCTCCCTCCCTCTCCC 1 chr1:179882559-179883059 ( 28) GCTTTCTCTCACTTCCTCTTTC 1 chr19:49580455-49580955 ( 22) TCCTCTCTTCTCTTTCTCTCTC 1 chr17:45148332-45148832 ( 24) TCTTTTCCTCCCTCCCTCCTCC 1 chr17:47649679-47650179 ( 23) TTCCTCCCTCCCTCGCTCCCTC 1 chr6:85642962-85643462 ( 79) TCACTCCCTCCCTCGCTCGCTC 1 chr21:25607280-25607780 ( 24) TCCTTCTCCGCCCTCCTCCCCC 1 chr12:54359114-54359614 ( 45) GCTCTCTCTCTTTCGCTGTCTC 1 chr22:20495991-20496491 ( 69) TCTTACTCCCCCCCTCTCATTC 1 chr20:48921192-48921692 ( 9) TCCTTTCCTCATCTCCTCTCTT 1 chr14:103520922-10352142 ( 22) TCCCTCCTCCTCCTCCTCCTCC 1 chr16:234305-234805 ( 43) GCTCCCCTCCTCCTCCTCTCCC 1 chr10:3314606-3315106 ( 40) TCACCCTCCCCTTCCCTCACTC 1 chr19:39410051-39410551 ( 26) TCCTCCCTCCTCCCTCTCACTT 1 chr16:71808662-71809162 ( 73) TCGCTCCCTGTCCTCCTCTCCT 1 chr1:109984473-109984973 ( 19) GCCCTTTCTCCCCGCCTCTTCC 1 chr19:47113460-47113960 ( 5) TCCTTCCCTCCCATTCTCCCAC 1 chr5:173328066-173328566 ( 9) GCTTCCCCTCCTCCTCCCACTC 1 chr19:40715554-40716054 ( 70) TCCCATCCTATCTTTCTTTCTC 1 chr19:28425257-28425757 ( 8) TCTTTCTCTCACCCTGTTTATT 1 chr1:26695352-26695852 ( 53) TTGTTCTCTCCCCTCCTCCTTT 1 chr12:56158182-56158682 ( 56) TCTCTTCCTGCCTCTCGTCCCC 1 chr17:7836701-7837201 ( 68) TCTCTTTCCCCTCTCCCTTCCC 1 chr20:58650953-58651453 ( 46) GCCCTCTTCCTGTCCGTCCCTC 1 chr1:183471806-183472306 ( 63) GTCTTCCCCCTTCTTATCACTC 1 chr10:102420960-10242146 ( 36) TCCTCTTCCCTCTCGGCCCCTC 1 chr5:83097818-83098318 ( 78) TCATTTCCTCTGCTTATCTTTT 1 chr17:42388550-42389050 ( 22) TCCCTCCCTCCCCCCGGGCTTC 1 chr10:93702404-93702904 ( 70) TCTCCCGCTGCCCTTGTTTCCC 1 chr10:17201438-17201938 ( 46) GCTCCTCCTCCCTCCATCGCGC 1 chr20:38435028-38435528 ( 67) TCCCTCGCCGTCCTTCGCCATC 1 chr15:70097482-70097982 ( 28) GCTTCCTTCCTTCCCCTCGGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYYTCYCTCYCYYYCTCYCTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 11.1396 E= 4.8e-058 -1200 -1200 -19 177 -1200 169 -1200 -118 -159 39 -251 121 -1200 113 -1200 82 -218 -35 -1200 173 -1200 139 -1200 28 -1200 65 -251 121 -1200 161 -1200 -60 -1200 7 -1200 168 -318 161 -119 -1200 -118 48 -1200 121 -1200 148 -251 -37 -318 65 -1200 128 -1200 113 -351 73 -1200 57 -151 114 -159 153 -119 -1200 -1200 -193 -193 195 -1200 157 -251 -86 -86 -6 -151 121 -218 134 -251 -18 -318 7 -351 157 -1200 161 -1200 -60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYYTCYCTCYCYYYCTCYCTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 41 E= 4.8e-058 0.000000 0.000000 0.243902 0.756098 0.000000 0.902439 0.000000 0.097561 0.073171 0.365854 0.048780 0.512195 0.000000 0.609756 0.000000 0.390244 0.048780 0.219512 0.000000 0.731707 0.000000 0.731707 0.000000 0.268293 0.000000 0.439024 0.048780 0.512195 0.000000 0.853659 0.000000 0.146341 0.000000 0.292683 0.000000 0.707317 0.024390 0.853659 0.121951 0.000000 0.097561 0.390244 0.000000 0.512195 0.000000 0.780488 0.048780 0.170732 0.024390 0.439024 0.000000 0.536585 0.000000 0.609756 0.024390 0.365854 0.000000 0.414634 0.097561 0.487805 0.073171 0.804878 0.121951 0.000000 0.000000 0.073171 0.073171 0.853659 0.000000 0.829268 0.048780 0.121951 0.121951 0.268293 0.097561 0.512195 0.048780 0.707317 0.048780 0.195122 0.024390 0.292683 0.024390 0.658537 0.000000 0.853659 0.000000 0.146341 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYYTCYCTCYCYYYCTCYCTC MEME-4 regular expression -------------------------------------------------------------------------------- [TG]C[TC][CT][TC][CT][TC]C[TC]C[TC]C[TC][CT][TC]CTC[TC]C[TC]C -------------------------------------------------------------------------------- Time 1466.03 secs. ******************************************************************************** ******************************************************************************** MOTIF TKTKTKTKTKTKTRTD MEME-5 width = 16 sites = 44 llr = 522 E-value = 2.3e-023 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKTKTKTKTKTKTRTD MEME-5 Description -------------------------------------------------------------------------------- Simplified A :1:1113111:::433 pos.-specific C :::::::::::::::: probability G :5:53514:5:6:513 matrix T a4a4647494a4a164 bits 2.2 * 2.0 * * * * 1.7 * * * * 1.5 * * * * * Relative 1.3 * * * * * Entropy 1.1 * * * * *** (17.1 bits) 0.9 * * * * * *** * 0.7 ******* ***** * 0.4 *************** 0.2 **************** 0.0 ---------------- Multilevel TGTGTGTTTGTGTGTT consensus T TGTAG T T AAG sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTKTKTKTKTKTRTD MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chr17:75368282-75368782 + 43 7.54e-09 gtcaggcGTT TGtttttttttttgtt gttttttttt chr7:150359969-150360469 - 80 2.84e-08 ACTTA TTTTTGTGTGTGTGTG GTGTTTGTGT chr1:228781650-228782150 + 38 2.84e-08 gtgtgtatgg tttgtgtgtttgtgtg gtctgtgtgt chr6:111568240-111568740 + 36 3.33e-08 tgtgtgtgtg tgtgtgtgtgtgtgtA CGTGCACGTG chr17:73310534-73311034 - 44 3.33e-08 CTGAAGTGCG TGTGTGTGTGTGTGTG TGTGTGTGTG chr19:35819842-35820342 - 49 3.33e-08 TGAGCATGTG TGTGTGTGTGTGTGTG TGTGTGTGTG chr7:139340556-139341056 + 76 5.72e-08 CCAACTTTAC TTTTTTTTTTTTTAAA TGGGAAGTG chr1:10793917-10794417 + 43 1.14e-07 tgtgtgtgcg tgtttgtatgtgtatg cgtgtgtgtg chr12:1605015-1605515 + 74 1.75e-07 tgtttgtgcc tgtgtgagtgtgtgtA CTGCAGGGTA chr14:103104968-10310546 + 29 4.19e-07 TGTGTGTGTG TTTGTGTCTGTGTGTT GGTGGATCTG chr1:233112851-233113351 - 1 4.19e-07 GCATTCTTAG TGTTGTATTGTGTAAT chr6:43702489-43702989 + 16 4.71e-07 CTGTTTGGGG TGTGTGAAtgtgtgtg tttgtgtgtg chr10:112793311-11279381 + 52 4.71e-07 TAATCTCTCT TTTGTTTGTTTGTCTT GTGGAACATG chr1:161764992-161765492 + 11 5.31e-07 TTTATGTCAA TTTTTGAATTTGTAAT TGGGTGAGAA chr20:52972203-52972703 + 60 5.31e-07 atgtgggggg tgtgagtgtgtgtgtg cgaggaagcg chr2:234969768-234970268 - 6 5.96e-07 AGTGTGTGTA TGTGGGAGTGTGTGTG AGAGT chr6:43321955-43322455 - 18 7.30e-07 TTTGAAGTGT TGTGGTTTTGTTTTTA TTCATCTCAA chr6:44247016-44247516 + 34 7.30e-07 ATTCGTGTTG TTTTTGTTTTTTTCTG TCCTTTAGGG chr6:56529600-56530100 - 83 7.30e-07 AC TATTGTTTTGTTTAAT TGCAAACTAA chr6:137853592-137854092 + 53 8.12e-07 ATGCTTTAat tttttaagtgtgtgtt atgaccaggc chr1:41870091-41870591 - 82 1.09e-06 GTG TGTGTGATTATTTAAT TGCAACGTTG chr7:27165476-27165976 + 22 1.33e-06 GCAAAAGCCA TATGTTTTTATGTAAA GGGATCGTGC chr19:39033049-39033549 - 59 1.46e-06 GCCCAGCTAA TTTTTGTATTTTTAGT AGAGACGGGG chr6:142323367-142323867 - 71 1.46e-06 GGCTATACCA TTTAGGTTTGTGTAAA TACACTCTAT chr9:18976699-18977199 - 20 1.61e-06 GTGCTTCACA TTTGTTTTGGTTTGTG GTTTTGTGGG chr7:133492163-133492663 + 80 1.61e-06 ATGGTTCTCT TTTGGTTGTGTTTAGT TCTGt chr22:49975428-49975928 + 85 1.61e-06 gtgtgctgtg tgtggtgttgtgtgtg chr19:38243757-38244257 - 3 2.11e-06 GTGAATTGGT TTTATTTTATTTTATT TC chr10:50463956-50464456 + 3 2.30e-06 ta ttttatattatgtgtt ttttaccaca chr19:39411875-39412375 + 39 2.72e-06 GATGTAGATG TTTTGGTTGGTTTATT AGATGTGTAA chr13:113493244-11349374 + 83 3.22e-06 TGATTGCCTC ATTGTTTGTTTTTAAG GT chr1:146039203-146039703 + 72 3.50e-06 cgttgggcgc TGTGTTTTTATTTAAC CCTCTCGCTT chr1:167658566-167659066 + 33 3.80e-06 tttccctttt tatggtattttttttt tgtctctagt chr17:71438648-71439148 + 28 5.20e-06 ACTGTGCTGT TGTTTGTGATTGTTAA GCTGCGTGTC chr13:41060496-41060996 - 18 6.06e-06 AACGCTTCCT TATTTTTCTTTTTTTT TGCAACTATC chr6:96924591-96925091 - 47 7.00e-06 CGTCCTAGCG TGTTTGTGTGTGCGAA AGTGTGTGTG chr1:148522579-148523079 + 19 7.00e-06 AGATGAGCCG TAAGTGTTTTTGTAAT TCAGGGTGCG chr18:58781564-58782064 + 49 8.09e-06 tatgccttgg tggtggtgtgtgtata atgtgcagtg chr1:232678508-232679008 - 35 8.67e-06 AGGCATGCTT TGTGTATAATTTTATG AGGGCACGTA chr19:34218152-34218652 + 79 8.67e-06 GATATGCTGC TGTGGGGTTTTGTGGT TTGTTT chr9:136631310-136631810 - 35 8.67e-06 CAGTCGTATG TGTGATAGAGTGTGTG AGAGCATGTA chr3:17730361-17730861 - 78 9.94e-06 CTCATGA TTTTATGATTTTTGTA GGACTCATTG chr12:806380-806880 + 53 9.94e-06 AGTTGTGGCT TTTATTAGTTTGTGAC CATGGAAATG chr5:59303278-59303778 + 75 1.06e-05 atccatcttg agttgatttttgtata cggtgagaga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTKTKTKTKTKTRTD MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:75368282-75368782 7.5e-09 42_[+5]_42 chr7:150359969-150360469 2.8e-08 79_[-5]_5 chr1:228781650-228782150 2.8e-08 37_[+5]_47 chr6:111568240-111568740 3.3e-08 35_[+5]_49 chr17:73310534-73311034 3.3e-08 43_[-5]_41 chr19:35819842-35820342 3.3e-08 48_[-5]_36 chr7:139340556-139341056 5.7e-08 75_[+5]_9 chr1:10793917-10794417 1.1e-07 42_[+5]_42 chr12:1605015-1605515 1.7e-07 73_[+5]_11 chr14:103104968-10310546 4.2e-07 28_[+5]_56 chr1:233112851-233113351 4.2e-07 [-5]_84 chr6:43702489-43702989 4.7e-07 15_[+5]_69 chr10:112793311-11279381 4.7e-07 51_[+5]_33 chr1:161764992-161765492 5.3e-07 10_[+5]_74 chr20:52972203-52972703 5.3e-07 59_[+5]_25 chr2:234969768-234970268 6e-07 5_[-5]_79 chr6:43321955-43322455 7.3e-07 17_[-5]_67 chr6:44247016-44247516 7.3e-07 33_[+5]_51 chr6:56529600-56530100 7.3e-07 82_[-5]_2 chr6:137853592-137854092 8.1e-07 52_[+5]_32 chr1:41870091-41870591 1.1e-06 81_[-5]_3 chr7:27165476-27165976 1.3e-06 21_[+5]_63 chr19:39033049-39033549 1.5e-06 58_[-5]_26 chr6:142323367-142323867 1.5e-06 70_[-5]_14 chr9:18976699-18977199 1.6e-06 19_[-5]_65 chr7:133492163-133492663 1.6e-06 79_[+5]_5 chr22:49975428-49975928 1.6e-06 84_[+5] chr19:38243757-38244257 2.1e-06 2_[-5]_82 chr10:50463956-50464456 2.3e-06 2_[+5]_82 chr19:39411875-39412375 2.7e-06 38_[+5]_46 chr13:113493244-11349374 3.2e-06 82_[+5]_2 chr1:146039203-146039703 3.5e-06 71_[+5]_13 chr1:167658566-167659066 3.8e-06 32_[+5]_52 chr17:71438648-71439148 5.2e-06 27_[+5]_57 chr13:41060496-41060996 6.1e-06 17_[-5]_67 chr6:96924591-96925091 7e-06 46_[-5]_38 chr1:148522579-148523079 7e-06 18_[+5]_66 chr18:58781564-58782064 8.1e-06 48_[+5]_36 chr1:232678508-232679008 8.7e-06 34_[-5]_50 chr19:34218152-34218652 8.7e-06 78_[+5]_6 chr9:136631310-136631810 8.7e-06 34_[-5]_50 chr3:17730361-17730861 9.9e-06 77_[-5]_7 chr12:806380-806880 9.9e-06 52_[+5]_32 chr5:59303278-59303778 1.1e-05 74_[+5]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTKTKTKTKTKTRTD MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKTKTKTKTKTKTRTD width=16 seqs=44 chr17:75368282-75368782 ( 43) TGTTTTTTTTTTTGTT 1 chr7:150359969-150360469 ( 80) TTTTTGTGTGTGTGTG 1 chr1:228781650-228782150 ( 38) TTTGTGTGTTTGTGTG 1 chr6:111568240-111568740 ( 36) TGTGTGTGTGTGTGTA 1 chr17:73310534-73311034 ( 44) TGTGTGTGTGTGTGTG 1 chr19:35819842-35820342 ( 49) TGTGTGTGTGTGTGTG 1 chr7:139340556-139341056 ( 76) TTTTTTTTTTTTTAAA 1 chr1:10793917-10794417 ( 43) TGTTTGTATGTGTATG 1 chr12:1605015-1605515 ( 74) TGTGTGAGTGTGTGTA 1 chr14:103104968-10310546 ( 29) TTTGTGTCTGTGTGTT 1 chr1:233112851-233113351 ( 1) TGTTGTATTGTGTAAT 1 chr6:43702489-43702989 ( 16) TGTGTGAATGTGTGTG 1 chr10:112793311-11279381 ( 52) TTTGTTTGTTTGTCTT 1 chr1:161764992-161765492 ( 11) TTTTTGAATTTGTAAT 1 chr20:52972203-52972703 ( 60) TGTGAGTGTGTGTGTG 1 chr2:234969768-234970268 ( 6) TGTGGGAGTGTGTGTG 1 chr6:43321955-43322455 ( 18) TGTGGTTTTGTTTTTA 1 chr6:44247016-44247516 ( 34) TTTTTGTTTTTTTCTG 1 chr6:56529600-56530100 ( 83) TATTGTTTTGTTTAAT 1 chr6:137853592-137854092 ( 53) TTTTTAAGTGTGTGTT 1 chr1:41870091-41870591 ( 82) TGTGTGATTATTTAAT 1 chr7:27165476-27165976 ( 22) TATGTTTTTATGTAAA 1 chr19:39033049-39033549 ( 59) TTTTTGTATTTTTAGT 1 chr6:142323367-142323867 ( 71) TTTAGGTTTGTGTAAA 1 chr9:18976699-18977199 ( 20) TTTGTTTTGGTTTGTG 1 chr7:133492163-133492663 ( 80) TTTGGTTGTGTTTAGT 1 chr22:49975428-49975928 ( 85) TGTGGTGTTGTGTGTG 1 chr19:38243757-38244257 ( 3) TTTATTTTATTTTATT 1 chr10:50463956-50464456 ( 3) TTTTATATTATGTGTT 1 chr19:39411875-39412375 ( 39) TTTTGGTTGGTTTATT 1 chr13:113493244-11349374 ( 83) ATTGTTTGTTTTTAAG 1 chr1:146039203-146039703 ( 72) TGTGTTTTTATTTAAC 1 chr1:167658566-167659066 ( 33) TATGGTATTTTTTTTT 1 chr17:71438648-71439148 ( 28) TGTTTGTGATTGTTAA 1 chr13:41060496-41060996 ( 18) TATTTTTCTTTTTTTT 1 chr6:96924591-96925091 ( 47) TGTTTGTGTGTGCGAA 1 chr1:148522579-148523079 ( 19) TAAGTGTTTTTGTAAT 1 chr18:58781564-58782064 ( 49) TGGTGGTGTGTGTATA 1 chr1:232678508-232679008 ( 35) TGTGTATAATTTTATG 1 chr19:34218152-34218652 ( 79) TGTGGGGTTTTGTGGT 1 chr9:136631310-136631810 ( 35) TGTGATAGAGTGTGTG 1 chr3:17730361-17730861 ( 78) TTTTATGATTTTTGTA 1 chr12:806380-806880 ( 53) TTTATTAGTTTGTGAC 1 chr5:59303278-59303778 ( 75) AGTTGATTTTTGTATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTKTKTKTKTKTRTD MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 51000 bayes= 12.2594 E= 2.3e-023 -228 -1210 -1210 211 -96 -1210 77 89 -328 -1210 -361 211 -170 -1210 91 89 -128 -1210 -3 152 -170 -1210 84 97 18 -1210 -203 162 -70 -262 47 97 -128 -1210 -262 197 -128 -1210 84 89 -1210 -1210 -1210 218 -1210 -1210 114 81 -1210 -361 -1210 214 89 -262 70 -128 42 -1210 -203 152 18 -262 19 81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTKTKTKTKTKTRTD MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 44 E= 2.3e-023 0.045455 0.000000 0.000000 0.954545 0.113636 0.000000 0.477273 0.409091 0.022727 0.000000 0.022727 0.954545 0.068182 0.000000 0.522727 0.409091 0.090909 0.000000 0.272727 0.636364 0.068182 0.000000 0.500000 0.431818 0.250000 0.000000 0.068182 0.681818 0.136364 0.045455 0.386364 0.431818 0.090909 0.000000 0.045455 0.863636 0.090909 0.000000 0.500000 0.409091 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.613636 0.386364 0.000000 0.022727 0.000000 0.977273 0.409091 0.045455 0.454545 0.090909 0.295455 0.000000 0.068182 0.636364 0.250000 0.045455 0.318182 0.386364 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTKTKTKTKTKTRTD MEME-5 regular expression -------------------------------------------------------------------------------- T[GT]T[GT][TG][GT][TA][TG]T[GT]T[GT]T[GA][TA][TGA] -------------------------------------------------------------------------------- Time 1808.82 secs. ******************************************************************************** ******************************************************************************** MOTIF ARTGGATAASGCRTYNGMCTCCKRAKCNRRRGRTYSYGGGTTCGAGTCC MEME-6 width = 49 sites = 6 llr = 279 E-value = 3.1e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARTGGATAASGCRTYNGMCTCCKRAKCNRRRGRTYSYGGGTTCGAGTCC MEME-6 Description -------------------------------------------------------------------------------- Simplified A a7:::7:a722:7::3:3::22:78::2553:7::::2::::::a22:: pos.-specific C :::2:::::3:a:232:7a:872:2:a32:::::3332::::a::22aa probability G :3:8a2::258:3:23a:::::33:7:2357a3::7:7aa:::a:7::: matrix T ::a::2a:2::::852:::a:25::3:3:::::a7:7:::aa::::7:: bits 2.2 * * ** * * ** * 2.0 * * ** * * ** * 1.7 * * * ** * * ** * * * ******* ** 1.5 * * * ** * * * ** * * * * ******* ** Relative 1.3 * * * ** ** * * *** * * * * ******* ** Entropy 1.1 ***** ** **** ***** **** ****** * ******* ** (67.1 bits) 0.9 ********* **** ***** **** ******** ******* *** 0.7 ********* ***** *********** ********************* 0.4 *************** *********** ********************* 0.2 *************** *********** ********************* 0.0 ------------------------------------------------- Multilevel AATGGATAAGGCATTAGCCTCCTAAGCCAAGGATTGTGGGTTCGAGTCC consensus G C G CG A GG T TGGA G CCC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARTGGATAASGCRTYNGMCTCCKRAKCNRRRGRTYSYGGGTTCGAGTCC MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------------------------- chr16:3152675-3153175 + 38 5.51e-29 ccggtggcct aatggataaggcattggcctcctaagccagggattgtgggttcgagtcc cacccggggt chr17:75034233-75034733 - 9 1.94e-26 CCAGTGGCCT AATGGATAAGGCACTGGCCTCCTAAGCCAGGGATTGTGGGTTCGAGTCC CACCTGGG chr17:68019695-68020195 - 13 6.01e-26 CCAGTGGCCT AATGGATAAGGCATCAGCCTCCGGAGCTGGGGATTGTGGGTTCGAGTCC CATCTGGGTC chr6:26537295-26537795 + 16 1.79e-20 ccagtggcgc aatggataacgcgtctgactacggatcagaagattccaggttcgactcc tggctggctc chr1:146039203-146039703 + 11 8.03e-20 cggctagctc agtcggtagagcatgagactcttaatctcagggtcgtgggttcgagccc cacgttgggc chr1:161399467-161399967 - 44 2.52e-18 CGTAGTGT AGTGGTTATCACGTTCGCCTCACACGCGAAAGGTCCCCGGTTCGAAACC GGGCGGAAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARTGGATAASGCRTYNGMCTCCKRAKCNRRRGRTYSYGGGTTCGAGTCC MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:3152675-3153175 5.5e-29 37_[+6]_14 chr17:75034233-75034733 1.9e-26 8_[-6]_43 chr17:68019695-68020195 6e-26 12_[-6]_39 chr6:26537295-26537795 1.8e-20 15_[+6]_36 chr1:146039203-146039703 8e-20 10_[+6]_41 chr1:161399467-161399967 2.5e-18 43_[-6]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARTGGATAASGCRTYNGMCTCCKRAKCNRRRGRTYSYGGGTTCGAGTCC MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARTGGATAASGCRTYNGMCTCCKRAKCNRRRGRTYSYGGGTTCGAGTCC width=49 seqs=6 chr16:3152675-3153175 ( 38) AATGGATAAGGCATTGGCCTCCTAAGCCAGGGATTGTGGGTTCGAGTCC 1 chr17:75034233-75034733 ( 9) AATGGATAAGGCACTGGCCTCCTAAGCCAGGGATTGTGGGTTCGAGTCC 1 chr17:68019695-68020195 ( 13) AATGGATAAGGCATCAGCCTCCGGAGCTGGGGATTGTGGGTTCGAGTCC 1 chr6:26537295-26537795 ( 16) AATGGATAACGCGTCTGACTACGGATCAGAAGATTCCAGGTTCGACTCC 1 chr1:146039203-146039703 ( 11) AGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCC 1 chr1:161399467-161399967 ( 44) AGTGGTTATCACGTTCGCCTCACACGCGAAAGGTCCCCGGTTCGAAACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARTGGATAASGCRTYNGMCTCCKRAKCNRRRGRTYSYGGGTTCGAGTCC MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 49 n= 31200 bayes= 12.7916 E= 3.1e-021 218 -923 -923 -923 159 -923 26 -923 -923 -923 -923 218 -923 -74 158 -923 -923 -923 184 -923 159 -923 -74 -41 -923 -923 -923 218 218 -923 -923 -923 159 -923 -74 -41 -41 26 84 -923 -41 -923 158 -923 -923 184 -923 -923 159 -923 26 -923 -923 -74 -923 191 -923 26 -74 118 59 -74 26 -41 -923 -923 184 -923 59 126 -923 -923 -923 184 -923 -923 -923 -923 -923 218 -41 158 -923 -923 -41 126 -923 -41 -923 -74 26 118 159 -923 26 -923 191 -74 -923 -923 -923 -923 126 59 -923 184 -923 -923 -41 26 -74 59 118 -74 26 -923 118 -923 84 -923 59 -923 126 -923 -923 -923 184 -923 159 -923 26 -923 -923 -923 -923 218 -923 26 -923 159 -923 26 126 -923 -923 26 -923 159 -41 -74 126 -923 -923 -923 184 -923 -923 -923 184 -923 -923 -923 -923 218 -923 -923 -923 218 -923 184 -923 -923 -923 -923 184 -923 218 -923 -923 -923 -41 -74 126 -923 -41 -74 -923 159 -923 184 -923 -923 -923 184 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARTGGATAASGCRTYNGMCTCCKRAKCNRRRGRTYSYGGGTTCGAGTCC MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 49 nsites= 6 E= 3.1e-021 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.166667 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.000000 0.166667 0.166667 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.166667 0.166667 0.166667 0.333333 0.500000 0.000000 0.166667 0.000000 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.166667 0.000000 0.833333 0.000000 0.333333 0.166667 0.500000 0.333333 0.166667 0.333333 0.166667 0.000000 0.000000 1.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.166667 0.833333 0.000000 0.000000 0.166667 0.666667 0.000000 0.166667 0.000000 0.166667 0.333333 0.500000 0.666667 0.000000 0.333333 0.000000 0.833333 0.166667 0.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 1.000000 0.000000 0.000000 0.166667 0.333333 0.166667 0.333333 0.500000 0.166667 0.333333 0.000000 0.500000 0.000000 0.500000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.333333 0.666667 0.000000 0.000000 0.333333 0.000000 0.666667 0.166667 0.166667 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.166667 0.666667 0.000000 0.166667 0.166667 0.000000 0.666667 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARTGGATAASGCRTYNGMCTCCKRAKCNRRRGRTYSYGGGTTCGAGTCC MEME-6 regular expression -------------------------------------------------------------------------------- A[AG]TGGATAA[GC]GC[AG]T[TC][AG]G[CA]CTCC[TG][AG]A[GT]C[CT][AG][AG][GA]G[AG]T[TC][GC][TC]GGGTTCGAGTCC -------------------------------------------------------------------------------- Time 2143.37 secs. ******************************************************************************** ******************************************************************************** MOTIF RVTGMTGTVATKRBAGRNGTGA MEME-7 width = 22 sites = 35 llr = 445 E-value = 5.1e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif RVTGMTGTVATKRBAGRNGTGA MEME-7 Description -------------------------------------------------------------------------------- Simplified A 53214::247:16172323126 pos.-specific C 12::61::4::1:3:::2:2:: probability G 4529::a22:133317637:72 matrix T ::6:19:6:394122113:712 bits 2.2 2.0 1.7 ** 1.5 ** * Relative 1.3 * ** ** Entropy 1.1 * ** ** * (18.3 bits) 0.9 * *** ** * ** * 0.7 * ****** ** * *** **** 0.4 *********** * *** **** 0.2 ************* *** **** 0.0 ---------------------- Multilevel AGTGCTGTAATTAGAGGTGTGA consensus GAA A ACT GGCTAAGA AG sequence C G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RVTGMTGTVATKRBAGRNGTGA MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr6:2028581-2029081 + 79 8.14e-10 ATTCCAGTTA ACAGCTGTAATTACTGGTGTGA chr6:27602238-27602738 + 59 8.14e-10 ggcctcccaa agtgctgagattacaggtgtaa accacggcac chr1:3992015-3992515 + 29 1.19e-09 TCAAAGGGGA GATGATGTCATGGGAGAGGTGA TGTCATGGAG chr17:75368282-75368782 + 3 2.47e-09 aa agtgctgggattataggcgtga cccactgcgt chr18:3409074-3409574 - 62 4.89e-09 GGCCTCCCAG AATGCTGGGATTACAGGCATGA GTCACCGTGC chr17:74514329-74514829 + 51 6.76e-09 tcatgtgatg agtgatgtcatgtgatgggtga tgtcatgtga chr17:74513994-74514494 + 7 1.26e-08 gtgatg ggtgatgtcatgtgatgggtga tgggatgggc chr15:59953447-59953947 - 10 2.25e-08 GTGATCAGTC AAGGCTGTATTTAATGATGTGA GAAAACTCG chr22:27212573-27213073 - 74 3.40e-08 ACACT AATGCTGAATTTATAGAAGTGG TTAAACAAAG chr1:159916145-159916645 - 17 3.90e-08 AGTCAGGGAG AGTGATGTCATTGCAGAGAAAA CATTGAATTC chr1:150876795-150877295 - 2 4.45e-08 GGCCTCCCAA AGTGCTGGGATTACAGACGCGA G chr17:74203333-74203833 + 34 8.40e-08 AGGGGGCAGG GCTGCTGAAATTGGAAGTGCGA ACGCCTACAT chr7:99013167-99013667 + 32 2.38e-07 CAGGCACAGT GCTGCTGTGATCACAGGGGAGG CCATGACTTG chr8:144456713-144457213 + 27 2.38e-07 TGACATCACA GGGGATGACATTACGGGGATGA CATCAAAGGG chr6:124487938-124488438 + 23 4.03e-07 CAGAAGCCAC AATACTGTATTTAGAATAATAA TAAGACAAGG chr1:183060424-183060924 - 5 4.46e-07 CTTGTCCCCA GGGAATGTAATGATAATTATGA GTCA chr12:51025923-51026423 - 39 7.26e-07 CTCGCCGTGC GGGGCTGTGAGGGGAGGTGTGG CCAGGGAGGG chr1:229221318-229221818 - 16 7.26e-07 CCCTGCATGG GAGGTTGTCTTGACAGATGTGG CAGGCTTCCC chr5:111092035-111092535 - 18 1.25e-06 TTCTCCCTCC AGAGCTCACATGGGAGGCGTGA CTTGGGTTCC chr12:56041756-56042256 + 59 1.62e-06 TTTCAGCAGA AATGCTGAATGTAAAGGAATAT TTGAGTAAAG chr7:158097527-158098027 + 49 1.76e-06 AATGGTCTCT AATGATGTCATAAGAAATAATG GGATTTATGT chr18:59455112-59455612 - 63 1.91e-06 CTCCCTTTGA AGAACTGGATTAGCAGAGGTGA TAAAGGCAGC chr12:131710727-13171122 - 1 1.91e-06 CACAATAGGC GCTGCTGTATTCAGTGGAAAGT chr1:151281448-151281948 + 68 2.07e-06 ATGGTCAGCG GATGACGTAATGTTTGGGGTGG CGTCCCATTC chr5:17305854-17306354 + 68 2.07e-06 TGCTTCAGGC AATGATGTCAGCAGTTGCGTGT TAAACAAATA chr16:12120417-12120917 + 1 2.63e-06 . GAGGCCGTAATCATTTGTGTGA ATGGGCCTGT chr10:121310106-12131060 - 12 2.63e-06 AGTGGTCAGT CCAGCTGTAATGGGAGTTAAAA TTATCCACGC chr12:38316451-38316951 + 6 3.07e-06 CCCCG AGTAATGTGATGGAGAGGGTAA TCATCCGGTC chr1:8626323-8626823 - 14 3.57e-06 GTTTGTGGTT GGAGATGTCATTTGTGGTTTAT GGTCATGATG chr17:61336002-61336502 + 62 4.13e-06 GATTACAGTC CCAGATGTCATTGCATACATTA CCCTGCTCTA chr1:163321605-163322105 - 43 5.11e-06 AGGTGGGACT GGAGTTGTCATGGAAGGGGCAG GGCGCAGGGC chr10:23408491-23408991 - 59 5.11e-06 CTCATTGGCT GCTGATGACATCATAGAGACTT CTGGGATTTA chr9:132193335-132193835 + 1 6.28e-06 . AGTGCTGGGTTGATAAGAGCTT TCTGGGTAGG chr18:11688948-11689448 + 40 7.17e-06 GTAACGAAAG CCAGCTGTATTTACGGTAGCGA GGGCTGGACC chr8:37302627-37303127 - 57 1.11e-05 TGCTTTGTTT GGTGCTGGAAGATATATTGTGA CACAGTAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RVTGMTGTVATKRBAGRNGTGA MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:2028581-2029081 8.1e-10 78_[+7] chr6:27602238-27602738 8.1e-10 58_[+7]_20 chr1:3992015-3992515 1.2e-09 28_[+7]_50 chr17:75368282-75368782 2.5e-09 2_[+7]_76 chr18:3409074-3409574 4.9e-09 61_[-7]_17 chr17:74514329-74514829 6.8e-09 50_[+7]_28 chr17:74513994-74514494 1.3e-08 6_[+7]_72 chr15:59953447-59953947 2.2e-08 9_[-7]_69 chr22:27212573-27213073 3.4e-08 73_[-7]_5 chr1:159916145-159916645 3.9e-08 16_[-7]_62 chr1:150876795-150877295 4.4e-08 1_[-7]_77 chr17:74203333-74203833 8.4e-08 33_[+7]_45 chr7:99013167-99013667 2.4e-07 31_[+7]_47 chr8:144456713-144457213 2.4e-07 26_[+7]_52 chr6:124487938-124488438 4e-07 22_[+7]_56 chr1:183060424-183060924 4.5e-07 4_[-7]_74 chr12:51025923-51026423 7.3e-07 38_[-7]_40 chr1:229221318-229221818 7.3e-07 15_[-7]_63 chr5:111092035-111092535 1.3e-06 17_[-7]_61 chr12:56041756-56042256 1.6e-06 58_[+7]_20 chr7:158097527-158098027 1.8e-06 48_[+7]_30 chr18:59455112-59455612 1.9e-06 62_[-7]_16 chr12:131710727-13171122 1.9e-06 [-7]_78 chr1:151281448-151281948 2.1e-06 67_[+7]_11 chr5:17305854-17306354 2.1e-06 67_[+7]_11 chr16:12120417-12120917 2.6e-06 [+7]_78 chr10:121310106-12131060 2.6e-06 11_[-7]_67 chr12:38316451-38316951 3.1e-06 5_[+7]_73 chr1:8626323-8626823 3.6e-06 13_[-7]_65 chr17:61336002-61336502 4.1e-06 61_[+7]_17 chr1:163321605-163322105 5.1e-06 42_[-7]_36 chr10:23408491-23408991 5.1e-06 58_[-7]_20 chr9:132193335-132193835 6.3e-06 [+7]_78 chr18:11688948-11689448 7.2e-06 39_[+7]_39 chr8:37302627-37303127 1.1e-05 56_[-7]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RVTGMTGTVATKRBAGRNGTGA MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RVTGMTGTVATKRBAGRNGTGA width=22 seqs=35 chr6:2028581-2029081 ( 79) ACAGCTGTAATTACTGGTGTGA 1 chr6:27602238-27602738 ( 59) AGTGCTGAGATTACAGGTGTAA 1 chr1:3992015-3992515 ( 29) GATGATGTCATGGGAGAGGTGA 1 chr17:75368282-75368782 ( 3) AGTGCTGGGATTATAGGCGTGA 1 chr18:3409074-3409574 ( 62) AATGCTGGGATTACAGGCATGA 1 chr17:74514329-74514829 ( 51) AGTGATGTCATGTGATGGGTGA 1 chr17:74513994-74514494 ( 7) GGTGATGTCATGTGATGGGTGA 1 chr15:59953447-59953947 ( 10) AAGGCTGTATTTAATGATGTGA 1 chr22:27212573-27213073 ( 74) AATGCTGAATTTATAGAAGTGG 1 chr1:159916145-159916645 ( 17) AGTGATGTCATTGCAGAGAAAA 1 chr1:150876795-150877295 ( 2) AGTGCTGGGATTACAGACGCGA 1 chr17:74203333-74203833 ( 34) GCTGCTGAAATTGGAAGTGCGA 1 chr7:99013167-99013667 ( 32) GCTGCTGTGATCACAGGGGAGG 1 chr8:144456713-144457213 ( 27) GGGGATGACATTACGGGGATGA 1 chr6:124487938-124488438 ( 23) AATACTGTATTTAGAATAATAA 1 chr1:183060424-183060924 ( 5) GGGAATGTAATGATAATTATGA 1 chr12:51025923-51026423 ( 39) GGGGCTGTGAGGGGAGGTGTGG 1 chr1:229221318-229221818 ( 16) GAGGTTGTCTTGACAGATGTGG 1 chr5:111092035-111092535 ( 18) AGAGCTCACATGGGAGGCGTGA 1 chr12:56041756-56042256 ( 59) AATGCTGAATGTAAAGGAATAT 1 chr7:158097527-158098027 ( 49) AATGATGTCATAAGAAATAATG 1 chr18:59455112-59455612 ( 63) AGAACTGGATTAGCAGAGGTGA 1 chr12:131710727-13171122 ( 1) GCTGCTGTATTCAGTGGAAAGT 1 chr1:151281448-151281948 ( 68) GATGACGTAATGTTTGGGGTGG 1 chr5:17305854-17306354 ( 68) AATGATGTCAGCAGTTGCGTGT 1 chr16:12120417-12120917 ( 1) GAGGCCGTAATCATTTGTGTGA 1 chr10:121310106-12131060 ( 12) CCAGCTGTAATGGGAGTTAAAA 1 chr12:38316451-38316951 ( 6) AGTAATGTGATGGAGAGGGTAA 1 chr1:8626323-8626823 ( 14) GGAGATGTCATTTGTGGTTTAT 1 chr17:61336002-61336502 ( 62) CCAGATGTCATTGCATACATTA 1 chr1:163321605-163322105 ( 43) GGAGTTGTCATGGAAGGGGCAG 1 chr10:23408491-23408991 ( 59) GCTGATGACATCATAGAGACTT 1 chr9:132193335-132193835 ( 1) AGTGCTGGGTTGATAAGAGCTT 1 chr18:11688948-11689448 ( 40) CCAGCTGTATTTACGGTAGCGA 1 chr8:37302627-37303127 ( 57) GGTGCTGGAAGATATATTGTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RVTGMTGTVATKRBAGRNGTGA MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 11.788 E= 5.1e-010 114 -170 62 -1177 51 -29 71 -1177 5 -1177 -70 144 -95 -1177 167 -1177 75 103 -1177 -195 -1177 -229 -1177 209 -1177 -328 180 -1177 -14 -1177 -70 151 86 41 -29 -1177 175 -1177 -1177 22 -1177 -1177 -129 200 -137 -96 30 95 137 -1177 3 -63 -63 17 30 -14 163 -1177 -170 5 -14 -1177 124 -63 37 -1177 103 -63 -37 -70 17 63 51 -1177 124 -295 -63 -70 -1177 163 5 -1177 124 -95 151 -1177 -48 -37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RVTGMTGTVATKRBAGRNGTGA MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 35 E= 5.1e-010 0.485714 0.085714 0.428571 0.000000 0.314286 0.228571 0.457143 0.000000 0.228571 0.000000 0.171429 0.600000 0.114286 0.000000 0.885714 0.000000 0.371429 0.571429 0.000000 0.057143 0.000000 0.057143 0.000000 0.942857 0.000000 0.028571 0.971429 0.000000 0.200000 0.000000 0.171429 0.628571 0.400000 0.371429 0.228571 0.000000 0.742857 0.000000 0.000000 0.257143 0.000000 0.000000 0.114286 0.885714 0.085714 0.142857 0.342857 0.428571 0.571429 0.000000 0.285714 0.142857 0.142857 0.314286 0.342857 0.200000 0.685714 0.000000 0.085714 0.228571 0.200000 0.000000 0.657143 0.142857 0.285714 0.000000 0.571429 0.142857 0.171429 0.171429 0.314286 0.342857 0.314286 0.000000 0.657143 0.028571 0.142857 0.171429 0.000000 0.685714 0.228571 0.000000 0.657143 0.114286 0.628571 0.000000 0.200000 0.171429 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RVTGMTGTVATKRBAGRNGTGA MEME-7 regular expression -------------------------------------------------------------------------------- [AG][GAC][TA]G[CA]TG[TA][ACG][AT]T[TG][AG][GCT][AT][GA][GA][TG][GA]T[GA][AG] -------------------------------------------------------------------------------- Time 2481.31 secs. ******************************************************************************** ******************************************************************************** MOTIF YCTYTYYYYTCYBCCTCSCYCH MEME-8 width = 22 sites = 45 llr = 555 E-value = 9.6e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCTYTYYYYTCYBCCTCSCYCH MEME-8 Description -------------------------------------------------------------------------------- Simplified A 112::1:::1:::1::::21:2 pos.-specific C 572623564273458:658362 probability G :::::2::::::32::23:221 matrix T 426485546737422a22:414 bits 2.2 2.0 * 1.7 * 1.5 * Relative 1.3 * * Entropy 1.1 ** ** *** ** * (17.8 bits) 0.9 ** ****** ** * 0.7 ***** ****** ** * * 0.4 ************* ***** * 0.2 ********************** 0.0 ---------------------- Multilevel CCTCTTCCTTCTCCCTCCCTCT consensus TTCTCCTTC TCTGT TGACGA sequence G T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTYTYYYYTCYBCCTCSCYCH MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr17:48728678-48729178 + 69 3.26e-11 ctttctctcc tctctctcttctccctctctct cttcttttcc chr17:7484228-7484728 + 59 4.46e-11 TATTCGTTAC CCTTTTTCTTCTTCCTCCCCCA AAAAcctttt chr12:54032580-54033080 + 17 1.31e-09 CCAAGAACCT TTTTTTTTTTTtccctccccct tccctctttc chr17:47649679-47650179 + 72 3.06e-09 actcacagcc tcccttccttctttctccctcc GCCTCCC chr10:15434119-15434619 + 1 5.88e-08 . tctcttctttttctctccattt ccttccttcc chr19:47113460-47113960 - 36 6.82e-08 AGCTTTCGGT TATTTTTTTTTTCCCTCTCCGT AGCCTGAATT chr1:234723932-234724432 - 31 7.88e-08 GCAGGGTGGT TTTTTTCTCTCTCTCTCCACCT CCCTCCTCCC chr19:39410051-39410551 + 1 9.08e-08 . CCTCTTTTTTCTCCTTGCCCCG CACTCCTCCC chr11:120347011-12034751 + 11 1.04e-07 ttttctttct ttctttctctctgtctctctct gtttctctct chr5:173328066-173328566 + 45 1.20e-07 tttttgctcg ccttttccctcctcctcGCGGC CGCGGCTCGG chr7:91264172-91264672 - 71 2.31e-07 CAACTCGC TCCCTCTCCTCTGCCTCGCGCG CCCTCGGACC chr9:92325165-92325665 + 11 2.61e-07 CGGAGCATCC TCTCTTCCTTCCTACTCGATTT CCAACCCAGC chr16:234305-234805 - 71 2.61e-07 CTCTCCGT CCTCTTTCCCCTCCTTCTCTGC GTCCTCGCTC chr10:3314606-3315106 - 67 2.95e-07 CTCTGTGAAG TCACTGTCCCTTCCCTCTCTCT GTGAGTCACC chr1:21345610-21346110 + 18 3.33e-07 GCCTCGGCGA CCTTTGTCTCCTGCCTGGCTCC TGCACTGGAG chr20:3811611-3812111 - 73 3.33e-07 GTGAGG CCCCTCCCTTCCTGCTGCCCCA GGCCCCGCTG chr22:27766628-27767128 + 66 4.21e-07 ATTCCTGTCA TTTTtcccctcttcctggacca ccactttcct chr22:20495991-20496491 + 20 5.29e-07 tccccgctca tatcctccctctcctttcctca ttcccttctt chr22:35840399-35840899 - 60 5.29e-07 ATGGCGCTTG CCCCTCCCTACCTCCTCCCCCC TACACACACA chrX:101408063-101408563 - 18 1.00e-06 GATACCGGGT AATTTTCCTCCTTCTTCCCTCA AACGGCTATA chr5:124734995-124735495 - 68 1.22e-06 CGCCTTCACC TCTTTCTTCATTTGCTCCAGCT TCTAGTTTGA chr16:2267853-2268353 + 17 1.48e-06 Cccgccgccg ccacctcctcctgctttcctca gccgccgagg chr1:224113921-224114421 - 28 1.48e-06 TTGGCCGCCG CCTCCTTCCTCTGCCATCCGCT CCTCCGCCGC chr5:74766913-74767413 - 63 1.48e-06 CGGTTCCGAG CCTCTGTTTTCCGCTTTTAGCT AGGAGGACGG chr4:105708477-105708977 - 32 1.63e-06 ACTGTGGGAA CCTTTGTTTTCCTGCTTTCGGA GCCGGCCAGT chr14:103520922-10352142 - 73 1.63e-06 CCGCTA CCTCCGCTTTCCCTCTCGCCCC CCTCGCGGGG chr6:157323281-157323781 - 70 1.79e-06 GTAGCGGAA CCTTTCTCCTCCGCCTGGTTCT CGCTTCCACC chr5:83097818-83098318 - 5 1.96e-06 AATTTCACTT CCTCTCCTTTCCTACTCTAACA CTAT chr1:155244582-155245082 - 39 2.14e-06 CTCGCTCGCT CTCTCGCTCTCTCGCTCTCTCT CGCTCGCTCT chr17:7836701-7837201 + 14 2.34e-06 GAGGCTTCCT CCCCCTTCTATTCCCTCCCACC TCTGCCCCGA chr9:137241095-137241595 + 28 2.34e-06 TGCTGTTTGT CTACTTCCTCCTGCTTCCccgc cgccgccgcc chr17:45148332-45148832 - 78 2.55e-06 T CATCTCCCCTTTGGCTCGATGC TCTGCTCTGC chr1:183471806-183472306 - 30 2.55e-06 TGCCGATTTC CCTCTTCCTTTTTGCACGCCTC CACTCTTCCC chr13:52194199-52194699 + 76 2.78e-06 TCTGGCTTGT TCCCCTCCCTTTGCTTTCCGGT GGG chr22:38681733-38682233 + 11 2.78e-06 TCGGCTGCGC TCACCTCCTTTCCGCTTCCGGT GTCCCCTACA chr20:5119585-5120085 - 40 3.03e-06 CAGCTAGACT TTCCTCCTTCCCGCCTGCCTGT AGCGGCGTTG chr6:85642962-85643462 + 52 3.29e-06 GAGTGGCCGC CTTTCCCCTTctggctcgcacg ctccctcact chr12:31749264-31749764 - 65 3.29e-06 TGATAGCCCA TCATTGTTCTCTTGTTTGCTTT TCTATAATTG chr19:11344380-11344880 - 77 3.29e-06 GT TCCCTCTCCTCCCGCTGGCTGG GCCTGCTGCC chr1:109484080-109484580 + 63 3.56e-06 TATAGGCTTG CCTTTATCTTTCTCCTTGCCTG CTGCCCCTCA chrX:41333398-41333898 - 78 3.86e-06 T TCACTCTTCTTCCTCTCTCAGT TCCCGGGCTT chr3:61821773-61822273 + 16 3.86e-06 GCATCATAGT AATCTATCTTCCTCCTTCATCA TCAGGgatta chr17:40287818-40288318 - 71 6.52e-06 GAGCTCAG CTCTTTTCCCTTCACTTCACCT CAGGCCTCGC chr2:86440851-86441351 - 27 8.02e-06 CCATAGGCCT ATTCTTTCCATTTGTTGCCTCA CAGTATGCAA chr7:101880961-101881461 + 20 9.76e-06 GCTGGAGATC TCATTACTGTCTGTCTCGCTCA CCGTAATTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTYTYYYYTCYBCCTCSCYCH MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:48728678-48729178 3.3e-11 68_[+8]_10 chr17:7484228-7484728 4.5e-11 58_[+8]_20 chr12:54032580-54033080 1.3e-09 16_[+8]_62 chr17:47649679-47650179 3.1e-09 71_[+8]_7 chr10:15434119-15434619 5.9e-08 [+8]_78 chr19:47113460-47113960 6.8e-08 35_[-8]_43 chr1:234723932-234724432 7.9e-08 30_[-8]_48 chr19:39410051-39410551 9.1e-08 [+8]_78 chr11:120347011-12034751 1e-07 10_[+8]_68 chr5:173328066-173328566 1.2e-07 44_[+8]_34 chr7:91264172-91264672 2.3e-07 70_[-8]_8 chr9:92325165-92325665 2.6e-07 10_[+8]_68 chr16:234305-234805 2.6e-07 70_[-8]_8 chr10:3314606-3315106 3e-07 66_[-8]_12 chr1:21345610-21346110 3.3e-07 17_[+8]_61 chr20:3811611-3812111 3.3e-07 72_[-8]_6 chr22:27766628-27767128 4.2e-07 65_[+8]_13 chr22:20495991-20496491 5.3e-07 19_[+8]_59 chr22:35840399-35840899 5.3e-07 59_[-8]_19 chrX:101408063-101408563 1e-06 17_[-8]_61 chr5:124734995-124735495 1.2e-06 67_[-8]_11 chr16:2267853-2268353 1.5e-06 16_[+8]_62 chr1:224113921-224114421 1.5e-06 27_[-8]_51 chr5:74766913-74767413 1.5e-06 62_[-8]_16 chr4:105708477-105708977 1.6e-06 31_[-8]_47 chr14:103520922-10352142 1.6e-06 72_[-8]_6 chr6:157323281-157323781 1.8e-06 69_[-8]_9 chr5:83097818-83098318 2e-06 4_[-8]_74 chr1:155244582-155245082 2.1e-06 38_[-8]_40 chr17:7836701-7837201 2.3e-06 13_[+8]_65 chr9:137241095-137241595 2.3e-06 27_[+8]_51 chr17:45148332-45148832 2.6e-06 77_[-8]_1 chr1:183471806-183472306 2.6e-06 29_[-8]_49 chr13:52194199-52194699 2.8e-06 75_[+8]_3 chr22:38681733-38682233 2.8e-06 10_[+8]_68 chr20:5119585-5120085 3e-06 39_[-8]_39 chr6:85642962-85643462 3.3e-06 51_[+8]_27 chr12:31749264-31749764 3.3e-06 64_[-8]_14 chr19:11344380-11344880 3.3e-06 76_[-8]_2 chr1:109484080-109484580 3.6e-06 62_[+8]_16 chrX:41333398-41333898 3.9e-06 77_[-8]_1 chr3:61821773-61822273 3.9e-06 15_[+8]_63 chr17:40287818-40288318 6.5e-06 70_[-8]_8 chr2:86440851-86441351 8e-06 26_[-8]_52 chr7:101880961-101881461 9.8e-06 19_[+8]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTYTYYYYTCYBCCTCSCYCH MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCTYTYYYYTCYBCCTCSCYCH width=22 seqs=45 chr17:48728678-48729178 ( 69) TCTCTCTCTTCTCCCTCTCTCT 1 chr17:7484228-7484728 ( 59) CCTTTTTCTTCTTCCTCCCCCA 1 chr12:54032580-54033080 ( 17) TTTTTTTTTTTTCCCTCCCCCT 1 chr17:47649679-47650179 ( 72) TCCCTTCCTTCTTTCTCCCTCC 1 chr10:15434119-15434619 ( 1) TCTCTTCTTTTTCTCTCCATTT 1 chr19:47113460-47113960 ( 36) TATTTTTTTTTTCCCTCTCCGT 1 chr1:234723932-234724432 ( 31) TTTTTTCTCTCTCTCTCCACCT 1 chr19:39410051-39410551 ( 1) CCTCTTTTTTCTCCTTGCCCCG 1 chr11:120347011-12034751 ( 11) TTCTTTCTCTCTGTCTCTCTCT 1 chr5:173328066-173328566 ( 45) CCTTTTCCCTCCTCCTCGCGGC 1 chr7:91264172-91264672 ( 71) TCCCTCTCCTCTGCCTCGCGCG 1 chr9:92325165-92325665 ( 11) TCTCTTCCTTCCTACTCGATTT 1 chr16:234305-234805 ( 71) CCTCTTTCCCCTCCTTCTCTGC 1 chr10:3314606-3315106 ( 67) TCACTGTCCCTTCCCTCTCTCT 1 chr1:21345610-21346110 ( 18) CCTTTGTCTCCTGCCTGGCTCC 1 chr20:3811611-3812111 ( 73) CCCCTCCCTTCCTGCTGCCCCA 1 chr22:27766628-27767128 ( 66) TTTTTCCCCTCTTCCTGGACCA 1 chr22:20495991-20496491 ( 20) TATCCTCCCTCTCCTTTCCTCA 1 chr22:35840399-35840899 ( 60) CCCCTCCCTACCTCCTCCCCCC 1 chrX:101408063-101408563 ( 18) AATTTTCCTCCTTCTTCCCTCA 1 chr5:124734995-124735495 ( 68) TCTTTCTTCATTTGCTCCAGCT 1 chr16:2267853-2268353 ( 17) CCACCTCCTCCTGCTTTCCTCA 1 chr1:224113921-224114421 ( 28) CCTCCTTCCTCTGCCATCCGCT 1 chr5:74766913-74767413 ( 63) CCTCTGTTTTCCGCTTTTAGCT 1 chr4:105708477-105708977 ( 32) CCTTTGTTTTCCTGCTTTCGGA 1 chr14:103520922-10352142 ( 73) CCTCCGCTTTCCCTCTCGCCCC 1 chr6:157323281-157323781 ( 70) CCTTTCTCCTCCGCCTGGTTCT 1 chr5:83097818-83098318 ( 5) CCTCTCCTTTCCTACTCTAACA 1 chr1:155244582-155245082 ( 39) CTCTCGCTCTCTCGCTCTCTCT 1 chr17:7836701-7837201 ( 14) CCCCCTTCTATTCCCTCCCACC 1 chr9:137241095-137241595 ( 28) CTACTTCCTCCTGCTTCCCCGC 1 chr17:45148332-45148832 ( 78) CATCTCCCCTTTGGCTCGATGC 1 chr1:183471806-183472306 ( 30) CCTCTTCCTTTTTGCACGCCTC 1 chr13:52194199-52194699 ( 76) TCCCCTCCCTTTGCTTTCCGGT 1 chr22:38681733-38682233 ( 11) TCACCTCCTTTCCGCTTCCGGT 1 chr20:5119585-5120085 ( 40) TTCCTCCTTCCCGCCTGCCTGT 1 chr6:85642962-85643462 ( 52) CTTTCCCCTTCTGGCTCGCACG 1 chr12:31749264-31749764 ( 65) TCATTGTTCTCTTGTTTGCTTT 1 chr19:11344380-11344880 ( 77) TCCCTCTCCTCCCGCTGGCTGG 1 chr1:109484080-109484580 ( 63) CCTTTATCTTTCTCCTTGCCTG 1 chrX:41333398-41333898 ( 78) TCACTCTTCTTCCTCTCTCAGT 1 chr3:61821773-61822273 ( 16) AATCTATCTTCCTCCTTCATCA 1 chr17:40287818-40288318 ( 71) CTCTTTTCCCTTCACTTCACCT 1 chr2:86440851-86441351 ( 27) ATTCTTTCCATTTGTTGCCTCA 1 chr7:101880961-101881461 ( 20) TCATTACTGTCTGTCTCGCTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTYTYYYYTCYBCCTCSCYCH MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 47400 bayes= 11.0857 E= 9.6e-021 -173 81 -1214 101 -99 126 -1214 1 -51 -19 -1214 144 -1214 111 -1214 86 -1214 -48 -1214 186 -173 5 -84 114 -1214 87 -1214 114 -1214 121 -1214 69 -1214 60 -365 133 -131 -65 -1214 173 -1214 130 -1214 49 -1214 26 -1214 159 -1214 35 5 69 -173 94 -19 -51 -1214 148 -1214 1 -231 -1214 -1214 211 -1214 105 -65 14 -1214 74 16 1 1 144 -1214 -331 -131 5 -65 101 -1214 121 -19 -99 14 -33 -133 93 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTYTYYYYTCYBCCTCSCYCH MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 45 E= 9.6e-021 0.066667 0.488889 0.000000 0.444444 0.111111 0.666667 0.000000 0.222222 0.155556 0.244444 0.000000 0.600000 0.000000 0.600000 0.000000 0.400000 0.000000 0.200000 0.000000 0.800000 0.066667 0.288889 0.155556 0.488889 0.000000 0.511111 0.000000 0.488889 0.000000 0.644444 0.000000 0.355556 0.000000 0.422222 0.022222 0.555556 0.088889 0.177778 0.000000 0.733333 0.000000 0.688889 0.000000 0.311111 0.000000 0.333333 0.000000 0.666667 0.000000 0.355556 0.288889 0.355556 0.066667 0.533333 0.244444 0.155556 0.000000 0.777778 0.000000 0.222222 0.044444 0.000000 0.000000 0.955556 0.000000 0.577778 0.177778 0.244444 0.000000 0.466667 0.311111 0.222222 0.222222 0.755556 0.000000 0.022222 0.088889 0.288889 0.177778 0.444444 0.000000 0.644444 0.244444 0.111111 0.244444 0.222222 0.111111 0.422222 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTYTYYYYTCYBCCTCSCYCH MEME-8 regular expression -------------------------------------------------------------------------------- [CT][CT][TC][CT][TC][TC][CT][CT][TC]T[CT][TC][CTG][CG][CT]T[CT][CGT][CA][TC][CG][TAC] -------------------------------------------------------------------------------- Time 2811.94 secs. ******************************************************************************** ******************************************************************************** MOTIF GMTGASTCA MEME-9 width = 9 sites = 47 llr = 459 E-value = 1.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GMTGASTCA MEME-9 Description -------------------------------------------------------------------------------- Simplified A 13::a:::a pos.-specific C :6:::4:a: probability G 71:9:6::: matrix T 3:a1:1a:: bits 2.2 * * * * 2.0 * * * * 1.7 * * *** 1.5 *** *** Relative 1.3 *** *** Entropy 1.1 *** *** (14.1 bits) 0.9 * *** *** 0.7 ********* 0.4 ********* 0.2 ********* 0.0 --------- Multilevel GCTGAGTCA consensus TA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMTGASTCA MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------- chr17:3890051-3890551 - 87 4.03e-06 GCTGT GCTGAGTCA GGCAACAGCC chr15:74546070-74546570 + 22 4.03e-06 CATACCGGCC GCTGAGTCA GCTCATAGCA chr13:110870190-11087069 - 10 4.03e-06 AATGACCAGC GCTGAGTCA GTCTAGGAG chr1:80054088-80054588 - 10 4.03e-06 CTCCAAACTC GCTGAGTCA TGCTGGACC chr19:11344380-11344880 + 49 4.03e-06 TGCCAGCTCA GCTGAGTCA CCACAGCTTG chr1:151972955-151973455 - 5 4.03e-06 GAGGTTAACT GCTGAGTCA AACA chr22:35371852-35372352 + 25 4.03e-06 ATCTGTTTTC GCTGAGTCA CGGTCCCGGT chr1:156661287-156661787 - 27 4.03e-06 TGTGCAGGAC GCTGAGTCA CCCGTGGACC chr1:21022256-21022756 + 12 4.03e-06 TCAGAAAACA GCTGAGTCA CCGACCATTA chr19:40715554-40716054 + 34 4.03e-06 GATTCCCAGT GCTGAGTCA GGAACCTTGG chr9:1458457-1458957 + 82 7.23e-06 CACTTGAGGT GATGAGTCA TAAATTGGGT chr17:45320858-45321358 + 25 7.23e-06 GAAAGTGGCT GATGAGTCA TCTGAATGTG chr8:630750-631250 + 27 1.13e-05 CATGGACAGA GCTGACTCA CAACCTCCTA chr1:67686601-67687101 - 23 1.13e-05 TGGGCTGACT GCTGACTCA CAGGGATCTC chr7:80876882-80877382 - 37 1.13e-05 ACTTTACAAG GCTGACTCA GAAGCAAACT chr5:179818828-179819328 + 79 1.13e-05 GTCATGGGAC GCTGACTCA CTGCCGGCCA chr16:77409286-77409786 + 32 1.13e-05 GCTCGCAGTA GCTGACTCA ACAGCCAAGG chr20:3811611-3812111 - 58 1.13e-05 CCCAGGCCCC GCTGACTCA GAGCCTGGCA chr1:236097024-236097524 - 12 1.45e-05 CCTGCTCCAT TCTGAGTCA CCCCTGGCCG chr15:67792416-67792916 + 20 1.45e-05 CCACTGAGTT TCTGAGTCA CCCTGCAGTC chr1:234700136-234700636 - 64 1.45e-05 AAATAATGCC TCTGAGTCA TCCATTAACC chr12:124518909-12451940 - 85 1.45e-05 ACTTGTC TCTGAGTCA CACAGCTAAT chr22:40711455-40711955 - 48 1.76e-05 ATAGCCTCTC GATGACTCA TGTCTCTGTA chr5:1950665-1951165 - 53 1.76e-05 ACACAGAGCA GATGACTCA CGCGCCCACA chr17:39769871-39770371 + 43 1.76e-05 CTGTAGACAC GATGACTCA ATGTGTATGA chr2:175805418-175805918 - 87 1.76e-05 ACGAG GATGACTCA CATTTATTGA chr1:232678508-232679008 + 10 2.02e-05 ACCTGCAAA TATGAGTCA CCCTGGTACG chr6:124487938-124488438 + 4 2.02e-05 GTG TATGAGTCA CAGAAGCCAC chr1:41870091-41870591 + 38 2.02e-05 gaccccctag tatgagtca cattcgactt chr16:15590842-15591342 - 75 2.34e-05 GATAACAGGA TCTGACTCA CTGTTTCAAG chr18:395627-396127 + 69 2.34e-05 GCAGCGTGCG TCTGACTCA TTTGGAAAAT chr1:229893815-229894315 - 16 2.34e-05 GACCCTTCTC TCTGACTCA TTTCCCATTA chr12:114914226-11491472 - 28 2.59e-05 CATGGAGCGA TATGACTCA CTGGATCATA chr9:136109622-136110122 - 62 2.91e-05 TCCGGGTGCA GCTGATTCA GCGGCTCCTG chr19:40920962-40921462 + 33 3.48e-05 CAGGGTAAAC ACTGAGTCA CTGTGTGTAA chr5:69521108-69521608 + 8 3.48e-05 agtatac gatgattca ttctcctatt chr9:110370298-110370798 + 35 3.48e-05 TAAAATAACA GATGATTCA ACATCCCTTT chr10:22552801-22553301 - 91 3.80e-05 A GCTTAGTCA TAGAGTACAT chr19:33293248-33293748 + 18 3.80e-05 GATCTGTCAT GCTTAGTCA CGGTAATTGC chr6:26285224-26285724 - 75 3.80e-05 TTTAGAAGTT GCTTAGTCA TGTCTGGCCG chr19:32373742-32374242 + 23 3.80e-05 tgaaaggctt gcttagtca ctgggcatga chr22:49970630-49971130 - 86 4.46e-05 AGGGAG GGTGAGTCA CGCGGTGGCA chr4:118327822-118328322 - 21 5.80e-05 TGTCTCAATT TATGATTCA TTCTTAAGCA chr13:87123910-87124410 - 39 6.46e-05 AATTATAAAT GGTGACTCA TGTGGTTACA chr5:125485093-125485593 - 17 6.78e-05 CAGCCATTCG TGTGAGTCA CGGAGTGACT chr13:113493244-11349374 - 26 7.03e-05 CTGTTATTTT AATGACTCA CTCAACTGCT chr4:185912725-185913225 + 77 7.03e-05 TAATTCAAAG AATGACTCA TGGAAAATAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMTGASTCA MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:3890051-3890551 4e-06 86_[-9]_5 chr15:74546070-74546570 4e-06 21_[+9]_70 chr13:110870190-11087069 4e-06 9_[-9]_82 chr1:80054088-80054588 4e-06 9_[-9]_82 chr19:11344380-11344880 4e-06 48_[+9]_43 chr1:151972955-151973455 4e-06 4_[-9]_87 chr22:35371852-35372352 4e-06 24_[+9]_67 chr1:156661287-156661787 4e-06 26_[-9]_65 chr1:21022256-21022756 4e-06 11_[+9]_80 chr19:40715554-40716054 4e-06 33_[+9]_58 chr9:1458457-1458957 7.2e-06 81_[+9]_10 chr17:45320858-45321358 7.2e-06 24_[+9]_67 chr8:630750-631250 1.1e-05 26_[+9]_65 chr1:67686601-67687101 1.1e-05 22_[-9]_69 chr7:80876882-80877382 1.1e-05 36_[-9]_55 chr5:179818828-179819328 1.1e-05 78_[+9]_13 chr16:77409286-77409786 1.1e-05 31_[+9]_60 chr20:3811611-3812111 1.1e-05 57_[-9]_34 chr1:236097024-236097524 1.4e-05 11_[-9]_80 chr15:67792416-67792916 1.4e-05 19_[+9]_72 chr1:234700136-234700636 1.4e-05 63_[-9]_28 chr12:124518909-12451940 1.4e-05 84_[-9]_7 chr22:40711455-40711955 1.8e-05 47_[-9]_44 chr5:1950665-1951165 1.8e-05 52_[-9]_39 chr17:39769871-39770371 1.8e-05 42_[+9]_49 chr2:175805418-175805918 1.8e-05 86_[-9]_5 chr1:232678508-232679008 2e-05 9_[+9]_82 chr6:124487938-124488438 2e-05 3_[+9]_88 chr1:41870091-41870591 2e-05 37_[+9]_54 chr16:15590842-15591342 2.3e-05 74_[-9]_17 chr18:395627-396127 2.3e-05 68_[+9]_23 chr1:229893815-229894315 2.3e-05 15_[-9]_76 chr12:114914226-11491472 2.6e-05 27_[-9]_64 chr9:136109622-136110122 2.9e-05 61_[-9]_30 chr19:40920962-40921462 3.5e-05 32_[+9]_59 chr5:69521108-69521608 3.5e-05 7_[+9]_84 chr9:110370298-110370798 3.5e-05 34_[+9]_57 chr10:22552801-22553301 3.8e-05 90_[-9]_1 chr19:33293248-33293748 3.8e-05 17_[+9]_74 chr6:26285224-26285724 3.8e-05 74_[-9]_17 chr19:32373742-32374242 3.8e-05 22_[+9]_69 chr22:49970630-49971130 4.5e-05 85_[-9]_6 chr4:118327822-118328322 5.8e-05 20_[-9]_71 chr13:87123910-87124410 6.5e-05 38_[-9]_53 chr5:125485093-125485593 6.8e-05 16_[-9]_75 chr13:113493244-11349374 7e-05 25_[-9]_66 chr4:185912725-185913225 7e-05 76_[+9]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMTGASTCA MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GMTGASTCA width=9 seqs=47 chr17:3890051-3890551 ( 87) GCTGAGTCA 1 chr15:74546070-74546570 ( 22) GCTGAGTCA 1 chr13:110870190-11087069 ( 10) GCTGAGTCA 1 chr1:80054088-80054588 ( 10) GCTGAGTCA 1 chr19:11344380-11344880 ( 49) GCTGAGTCA 1 chr1:151972955-151973455 ( 5) GCTGAGTCA 1 chr22:35371852-35372352 ( 25) GCTGAGTCA 1 chr1:156661287-156661787 ( 27) GCTGAGTCA 1 chr1:21022256-21022756 ( 12) GCTGAGTCA 1 chr19:40715554-40716054 ( 34) GCTGAGTCA 1 chr9:1458457-1458957 ( 82) GATGAGTCA 1 chr17:45320858-45321358 ( 25) GATGAGTCA 1 chr8:630750-631250 ( 27) GCTGACTCA 1 chr1:67686601-67687101 ( 23) GCTGACTCA 1 chr7:80876882-80877382 ( 37) GCTGACTCA 1 chr5:179818828-179819328 ( 79) GCTGACTCA 1 chr16:77409286-77409786 ( 32) GCTGACTCA 1 chr20:3811611-3812111 ( 58) GCTGACTCA 1 chr1:236097024-236097524 ( 12) TCTGAGTCA 1 chr15:67792416-67792916 ( 20) TCTGAGTCA 1 chr1:234700136-234700636 ( 64) TCTGAGTCA 1 chr12:124518909-12451940 ( 85) TCTGAGTCA 1 chr22:40711455-40711955 ( 48) GATGACTCA 1 chr5:1950665-1951165 ( 53) GATGACTCA 1 chr17:39769871-39770371 ( 43) GATGACTCA 1 chr2:175805418-175805918 ( 87) GATGACTCA 1 chr1:232678508-232679008 ( 10) TATGAGTCA 1 chr6:124487938-124488438 ( 4) TATGAGTCA 1 chr1:41870091-41870591 ( 38) TATGAGTCA 1 chr16:15590842-15591342 ( 75) TCTGACTCA 1 chr18:395627-396127 ( 69) TCTGACTCA 1 chr1:229893815-229894315 ( 16) TCTGACTCA 1 chr12:114914226-11491472 ( 28) TATGACTCA 1 chr9:136109622-136110122 ( 62) GCTGATTCA 1 chr19:40920962-40921462 ( 33) ACTGAGTCA 1 chr5:69521108-69521608 ( 8) GATGATTCA 1 chr9:110370298-110370798 ( 35) GATGATTCA 1 chr10:22552801-22553301 ( 91) GCTTAGTCA 1 chr19:33293248-33293748 ( 18) GCTTAGTCA 1 chr6:26285224-26285724 ( 75) GCTTAGTCA 1 chr19:32373742-32374242 ( 23) GCTTAGTCA 1 chr22:49970630-49971130 ( 86) GGTGAGTCA 1 chr4:118327822-118328322 ( 21) TATGATTCA 1 chr13:87123910-87124410 ( 39) GGTGACTCA 1 chr5:125485093-125485593 ( 17) TGTGAGTCA 1 chr13:113493244-11349374 ( 26) AATGACTCA 1 chr4:185912725-185913225 ( 77) AATGACTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMTGASTCA MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 9 n= 55200 bayes= 11.2793 E= 1.0e-001 -179 -1220 124 32 53 115 -213 -1220 -1220 -1220 -1220 218 -1220 -1220 171 -138 218 -1220 -1220 -1220 -1220 37 99 -138 -1220 -1220 -1220 218 -1220 184 -1220 -1220 218 -1220 -1220 -1220 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMTGASTCA MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 9 nsites= 47 E= 1.0e-001 0.063830 0.000000 0.659574 0.276596 0.319149 0.617021 0.063830 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.914894 0.085106 1.000000 0.000000 0.000000 0.000000 0.000000 0.361702 0.553191 0.085106 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMTGASTCA MEME-9 regular expression -------------------------------------------------------------------------------- [GT][CA]TGA[GC]TCA -------------------------------------------------------------------------------- Time 3132.21 secs. ******************************************************************************** ******************************************************************************** MOTIF GWCRMGGTGGCCGAGTGGTTAAGGCGWTGGACT MEME-10 width = 33 sites = 3 llr = 128 E-value = 2.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GWCRMGGTGGCCGAGTGGTTAAGGCGWTGGACT MEME-10 Description -------------------------------------------------------------------------------- Simplified A :7:37::::::::a::::::aa::::7:::a:: pos.-specific C ::a:3:::::aa::::::::::::a::::::a: probability G a::7:aa:aa::a:a:aa::::aa:a::aa::: matrix T :3:::::a:::::::a::aa::::::3a::::a bits 2.2 * * * **** * * * 2.0 * * * **** * * * 1.7 * * ********************* ****** 1.5 * * ********************* ****** Relative 1.3 *** **************************** Entropy 1.1 ********************************* (61.5 bits) 0.9 ********************************* 0.7 ********************************* 0.4 ********************************* 0.2 ********************************* 0.0 --------------------------------- Multilevel GACGAGGTGGCCGAGTGGTTAAGGCGATGGACT consensus T AC T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWCRMGGTGGCCGAGTGGTTAAGGCGWTGGACT MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------------------- chr11:66347886-66348386 + 34 2.45e-20 TGTCACGTAG gacgaggtggccgagtggttaaggcgatggact gctaatccat chr6:28212789-28213289 + 48 2.45e-20 TTCTTTGTGT gacgaggtggccgagtggttaaggcgatggact gctaatccat chr12:56190097-56190597 + 67 3.97e-19 GGTTTTGGAA GTCACggtggccgagtggttaaggcgttggact c -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWCRMGGTGGCCGAGTGGTTAAGGCGWTGGACT MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:66347886-66348386 2.5e-20 33_[+10]_34 chr6:28212789-28213289 2.5e-20 47_[+10]_20 chr12:56190097-56190597 4e-19 66_[+10]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWCRMGGTGGCCGAGTGGTTAAGGCGWTGGACT MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GWCRMGGTGGCCGAGTGGTTAAGGCGWTGGACT width=33 seqs=3 chr11:66347886-66348386 ( 34) GACGAGGTGGCCGAGTGGTTAAGGCGATGGACT 1 chr6:28212789-28213289 ( 48) GACGAGGTGGCCGAGTGGTTAAGGCGATGGACT 1 chr12:56190097-56190597 ( 67) GTCACGGTGGCCGAGTGGTTAAGGCGTTGGACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWCRMGGTGGCCGAGTGGTTAAGGCGWTGGACT MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 33 n= 40800 bayes= 13.3901 E= 2.0e+000 -823 -823 184 -823 159 -823 -823 59 -823 184 -823 -823 59 -823 125 -823 159 26 -823 -823 -823 -823 184 -823 -823 -823 184 -823 -823 -823 -823 217 -823 -823 184 -823 -823 -823 184 -823 -823 184 -823 -823 -823 184 -823 -823 -823 -823 184 -823 217 -823 -823 -823 -823 -823 184 -823 -823 -823 -823 217 -823 -823 184 -823 -823 -823 184 -823 -823 -823 -823 217 -823 -823 -823 217 217 -823 -823 -823 217 -823 -823 -823 -823 -823 184 -823 -823 -823 184 -823 -823 184 -823 -823 -823 -823 184 -823 159 -823 -823 59 -823 -823 -823 217 -823 -823 184 -823 -823 -823 184 -823 217 -823 -823 -823 -823 184 -823 -823 -823 -823 -823 217 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWCRMGGTGGCCGAGTGGTTAAGGCGWTGGACT MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 33 nsites= 3 E= 2.0e+000 0.000000 0.000000 1.000000 0.000000 0.666667 0.000000 0.000000 0.333333 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.666667 0.333333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.666667 0.000000 0.000000 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWCRMGGTGGCCGAGTGGTTAAGGCGWTGGACT MEME-10 regular expression -------------------------------------------------------------------------------- G[AT]C[GA][AC]GGTGGCCGAGTGGTTAAGGCG[AT]TGGACT -------------------------------------------------------------------------------- Time 3449.75 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:91264172-91264672 3.05e-04 18_[-3(1.59e-05)]_30_[-8(2.31e-07)]_\ 8 chr1:229893815-229894315 2.28e-03 15_[-9(2.34e-05)]_9_[-3(1.68e-05)]_\ 45 chr7:70092312-70092812 1.30e-01 100 chr22:36528825-36529325 8.30e-01 100 chr17:45320858-45321358 3.33e-03 24_[+9(7.23e-06)]_67 chr2:8681943-8682443 9.97e-01 100 chr16:86363095-86363595 2.34e-01 100 chr16:29811459-29811959 2.90e-01 21_[+4(3.70e-05)]_9_[+4(6.28e-05)]_\ 26 chr21:37073304-37073804 1.05e-01 100 chr15:47717548-47718048 1.57e-12 20_[+1(7.94e-13)]_1_[-2(4.88e-06)]_\ 31_[+5(3.33e-08)] chr10:97117306-97117806 3.82e-04 59_[-3(2.57e-11)]_19 chr17:40140259-40140759 9.65e-01 100 chr6:110815459-110815959 2.72e-01 100 chr19:2739983-2740483 3.27e-01 100 chr6:56529600-56530100 4.25e-03 36_[-5(3.50e-06)]_30_[-5(7.30e-07)]_\ 2 chr12:57782537-57783037 6.57e-01 100 chr16:1826897-1827397 9.96e-01 100 chr11:73377012-73377512 3.16e-14 29_[-2(2.79e-06)]_16_[+1(7.94e-13)]_\ 23 chr5:140711027-140711527 8.34e-01 100 chr20:5119585-5120085 2.03e-02 39_[-8(3.03e-06)]_39 chr19:47113460-47113960 1.52e-05 4_[-4(2.75e-07)]_9_[-8(6.82e-08)]_\ 43 chr12:131710727-13171122 2.69e-01 [-7(1.91e-06)]_78 chr17:66200632-66201132 3.95e-12 28_[-1(7.94e-13)]_[-1(7.49e-06)]_18_\ [+2(3.73e-07)]_2 chr10:112793311-11279381 1.19e-03 51_[+5(4.71e-07)]_33 chr17:41662618-41663118 4.85e-01 100 chr16:31179957-31180457 1.26e-02 19_[+8(7.99e-05)]_59 chr22:39529089-39529589 3.88e-01 100 chr11:125625838-12562633 2.24e-01 100 chr1:235328513-235329013 9.51e-01 100 chr5:138032624-138033124 5.24e-02 30_[+3(2.35e-05)]_48 chr17:45894509-45895009 1.82e-01 23_[-10(5.97e-05)]_44 chr7:141737974-141738474 1.47e-02 19_[-3(3.01e-05)]_59 chr9:137241095-137241595 7.39e-03 27_[+8(2.34e-06)]_51 chr12:6778720-6779220 1.40e-13 1_[-1(7.94e-13)]_79 chr11:78188246-78188746 7.28e-01 100 chr5:174514909-174515409 8.04e-01 100 chr5:17305854-17306354 1.28e-02 67_[+7(2.07e-06)]_11 chr5:90558425-90558925 9.88e-01 100 chr5:111092035-111092535 3.61e-01 17_[-7(1.25e-06)]_61 chr16:1309048-1309548 7.50e-02 64_[+8(3.16e-05)]_14 chr17:47649679-47650179 3.06e-08 22_[+4(1.34e-08)]_27_[+8(3.06e-09)]_\ 7 chr19:46600769-46601269 8.40e-01 100 chr8:144456713-144457213 6.29e-02 26_[+7(2.38e-07)]_10_[+7(6.28e-06)]_\ 20 chr5:64768417-64768917 9.48e-01 100 chr9:82923383-82923883 2.00e-01 100 chr4:118327822-118328322 5.87e-02 20_[-9(5.80e-05)]_71 chr15:74889931-74890431 4.15e-01 100 chr2:175805418-175805918 6.40e-02 86_[-9(1.76e-05)]_5 chr17:74203333-74203833 7.03e-04 7_[+3(9.97e-05)]_4_[+7(8.40e-08)]_\ 45 chr18:395627-396127 3.92e-02 68_[+9(2.34e-05)]_23 chr19:38544192-38544692 1.16e-02 4_[+2(7.54e-05)]_84 chr1:53838239-53838739 6.20e-01 100 chr9:133022256-133022756 1.43e-01 100 chr7:101880961-101881461 3.61e-02 19_[+8(9.76e-06)]_59 chr6:142323367-142323867 1.47e-01 70_[-5(1.46e-06)]_14 chr2:86440851-86441351 3.80e-02 26_[-8(8.02e-06)]_52 chr6:27505536-27506036 4.21e-01 100 chr20:62407297-62407797 3.71e-01 100 chrX:71532742-71533242 8.50e-01 100 chr1:3403653-3404153 2.00e-04 27_[-3(2.17e-08)]_51 chr10:100228810-10022931 2.02e-10 [-1(1.54e-10)]_[-1(2.89e-05)]_34_\ [-1(5.59e-06)]_6 chr1:228781650-228782150 1.62e-11 7_[-2(8.69e-06)]_5_[-2(4.86e-07)]_1_\ [+5(2.84e-08)]_[+1(1.80e-11)]_2_[-2(4.05e-06)]_1_[-2(5.41e-07)] chr14:36835062-36835562 1.23e-02 62_[+4(7.76e-05)]_16 chr14:20469294-20469794 3.14e-01 100 chr2:241881333-241881833 6.11e-13 61_[+1(7.94e-13)]_1_[+5(3.33e-08)]_\ 2 chr7:27165476-27165976 9.64e-02 21_[+5(1.33e-06)]_20_[+5(5.86e-05)]_\ 27 chr19:37506799-37507299 6.50e-01 100 chr7:158097527-158098027 2.90e-02 48_[+7(1.76e-06)]_30 chr5:38782980-38783480 4.00e-01 3_[+5(6.75e-05)]_81 chr19:58519587-58520087 8.62e-01 100 chr12:27710646-27711146 4.55e-01 100 chr12:122266249-12226674 8.04e-01 100 chr1:109984473-109984973 7.71e-03 18_[+4(2.75e-07)]_60 chr15:75368229-75368729 9.38e-01 100 chr19:36054833-36055333 6.75e-01 100 chr12:55715777-55716277 7.72e-01 100 chr14:70359534-70360034 8.88e-01 100 chr17:8139278-8139778 5.57e-01 100 chr10:5548763-5549263 6.05e-03 2_[+2(1.29e-06)]_86 chr10:102399326-10239982 9.11e-01 100 chrX:154370862-154371362 7.12e-01 100 chr6:116100802-116101302 1.00e+00 100 chr1:41870091-41870591 3.75e-05 37_[+9(2.02e-05)]_8_[+8(7.08e-05)]_\ 5_[-5(1.09e-06)]_3 chr19:58380514-58381014 9.89e-01 100 chr19:40715554-40716054 3.38e-06 33_[+9(4.03e-06)]_27_[+4(4.10e-07)]_\ 9 chr3:61821773-61822273 2.56e-03 15_[+8(3.86e-06)]_63 chr12:65606319-65606819 3.55e-01 51_[-7(7.95e-05)]_27 chr1:85048369-85048869 9.26e-01 100 chr18:3409074-3409574 2.69e-05 [-5(2.84e-05)]_45_[-7(4.89e-09)]_17 chr13:37000400-37000900 4.69e-01 100 chr6:30616857-30617357 7.43e-01 100 chr20:3811611-3812111 4.71e-04 57_[-9(1.13e-05)]_6_[-8(3.33e-07)]_\ 6 chr10:17201438-17201938 2.23e-02 45_[+4(2.66e-06)]_33 chr6:85678334-85678834 1.56e-01 100 chr1:1511685-1512185 3.21e-01 20_[+10(8.43e-05)]_47 chr13:41060496-41060996 9.53e-03 17_[-5(6.06e-06)]_67 chr12:10613294-10613794 9.53e-01 100 chr20:52972203-52972703 4.60e-14 2_[-2(5.50e-08)]_7_[+1(3.64e-12)]_\ 15_[+1(6.06e-08)]_9_[-2(5.60e-05)]_3 chr4:77075900-77076400 1.09e-01 100 chr10:121831698-12183219 8.82e-01 100 chr11:43880513-43881013 6.88e-01 100 chr17:48492540-48493040 6.79e-02 5_[+10(7.93e-05)]_62 chr1:233112851-233113351 1.32e-01 [-5(4.19e-07)]_84 chr13:87123910-87124410 3.35e-01 38_[-9(6.46e-05)]_53 chr14:104815896-10481639 6.99e-01 100 chr1:161764992-161765492 9.43e-02 10_[+5(5.31e-07)]_43_[+5(8.09e-05)]_\ 15 chr5:181222209-181222709 1.45e-01 25_[-10(1.68e-05)]_42 chr19:4182203-4182703 4.31e-01 100 chr1:167658566-167659066 1.41e-03 32_[+5(3.80e-06)]_52 chr5:99900359-99900859 7.90e-01 100 chr10:101830485-10183098 3.05e-13 1_[-1(7.94e-13)]_59_[-1(1.67e-07)] chr6:137853592-137854092 6.84e-03 52_[+5(8.12e-07)]_32 chr16:234305-234805 8.45e-05 8_[-8(9.15e-06)]_12_[-4(6.80e-08)]_\ 6_[-8(2.61e-07)]_8 chr7:138738641-138739141 2.79e-06 63_[-3(2.68e-12)]_15 chr8:124077184-124077684 1.54e-01 100 chr1:109099971-109100471 3.52e-01 100 chr6:31541667-31542167 1.93e-01 100 chr10:50067595-50068095 7.71e-01 100 chr16:30021387-30021887 1.33e-01 15_[+8(5.84e-05)]_63 chr12:38316451-38316951 6.50e-02 5_[+7(3.07e-06)]_73 chr8:37849669-37850169 4.18e-01 100 chr1:42335176-42335676 6.08e-01 66_[-3(9.26e-05)]_12 chr19:12669289-12669789 9.73e-01 100 chr10:102420960-10242146 3.92e-02 35_[-4(1.31e-06)]_43 chr19:40465376-40465876 9.99e-01 100 chr16:77409286-77409786 6.83e-02 31_[+9(1.13e-05)]_60 chr19:44071969-44072469 4.11e-01 65_[+3(9.73e-05)]_13 chr17:76353800-76354300 1.85e-01 3_[+6(8.92e-05)]_48 chr15:59953447-59953947 1.69e-04 9_[-7(2.25e-08)]_69 chr17:82494514-82495014 1.42e-02 17_[-6(1.41e-07)]_34 chr2:191321770-191322270 3.62e-01 100 chr12:54032580-54033080 5.98e-11 16_[+8(1.31e-09)]_8_[+4(1.62e-10)]_\ 32 chr5:74766913-74767413 3.50e-01 62_[-8(1.48e-06)]_16 chr19:47471971-47472471 1.14e-12 25_[-1(4.64e-12)]_[-1(2.09e-08)]_35 chr15:66883316-66883816 4.62e-02 49_[+4(5.84e-05)]_29 chr15:70526423-70526923 9.96e-01 100 chr7:128343652-128344152 1.74e-01 100 chr10:3314606-3315106 2.68e-06 12_[-8(7.53e-05)]_5_[-4(9.83e-08)]_\ 5_[-8(2.95e-07)]_12 chr1:114346461-114346961 9.03e-01 100 chr17:81393840-81394340 8.85e-01 100 chr16:31032996-31033496 7.35e-01 100 chr22:27212573-27213073 1.33e-03 73_[-7(3.40e-08)]_5 chr15:72230420-72230920 1.13e-01 100 chr10:15434119-15434619 1.27e-09 [+8(5.88e-08)]_18_[+4(8.78e-14)]_3_\ [+4(3.79e-07)]_13 chr10:51699497-51699997 2.25e-01 100 chr15:40160909-40161409 8.91e-01 100 chr1:21022256-21022756 9.57e-03 11_[+9(4.03e-06)]_80 chr12:124518909-12451940 2.36e-14 [-1(7.94e-13)]_64_[-9(1.45e-05)]_7 chr1:42177548-42178048 2.76e-11 8_[-1(1.83e-10)]_[-1(1.10e-06)]_\ [+2(5.50e-08)]_40 chr5:149345505-149346005 5.44e-01 100 chr19:48965177-48965677 1.98e-01 100 chr6:79078276-79078776 3.86e-01 100 chr6:27388663-27389163 6.04e-03 15_[-2(3.94e-05)]_73 chr17:61336002-61336502 2.90e-01 61_[+7(4.13e-06)]_17 chr12:2812715-2813215 8.35e-01 100 chr8:37472206-37472706 7.47e-01 100 chr19:39406780-39407280 2.32e-01 100 chr9:136109622-136110122 1.76e-01 61_[-9(2.91e-05)]_30 chr8:37380709-37381209 5.39e-01 100 chr17:75034233-75034733 2.86e-21 8_[-6(1.94e-26)]_43 chr19:35931572-35932072 1.69e-04 25_[-3(5.78e-08)]_53 chr17:75368282-75368782 4.24e-11 2_[+7(2.47e-09)]_18_[+5(7.54e-09)]_\ 42 chr4:185912725-185913225 1.96e-01 76_[+9(7.03e-05)]_15 chr16:30787011-30787511 8.19e-02 67_[-8(2.06e-05)]_11 chr19:36850998-36851498 9.88e-11 44_[+1(2.24e-09)]_36 chr11:62855511-62856011 1.33e-01 100 chr19:43596342-43596842 4.87e-01 100 chr12:54052006-54052506 5.87e-01 100 chr5:139341766-139342266 6.85e-01 100 chr14:24188667-24189167 1.19e-01 38_[+9(9.08e-05)]_53 chr19:42075458-42075958 6.85e-02 44_[+8(1.96e-05)]_34 chr17:51046562-51047062 3.60e-01 100 chr9:92325165-92325665 1.70e-03 10_[+8(2.61e-07)]_68 chr12:1605015-1605515 1.12e-11 19_[+1(1.78e-09)]_1_[-8(2.51e-05)]_\ 6_[+1(1.29e-09)]_12 chr7:98476707-98477207 7.34e-01 100 chr1:146039203-146039703 1.42e-14 10_[+6(8.03e-20)]_12_[+5(3.50e-06)]_\ 13 chr15:89893926-89894426 9.96e-01 100 chr19:32373742-32374242 1.87e-01 22_[+9(3.80e-05)]_69 chr1:9943168-9943668 5.16e-01 100 chr6:32972078-32972578 2.76e-01 100 chr1:156661287-156661787 7.25e-17 26_[-9(4.03e-06)]_33_[+1(7.94e-13)]_\ 12 chr19:44500151-44500651 5.26e-01 100 chr10:121310106-12131060 3.46e-02 11_[-7(2.63e-06)]_67 chr19:12938510-12939010 9.94e-01 100 chr1:148522579-148523079 5.22e-03 18_[+5(7.00e-06)]_66 chr9:110370298-110370798 4.06e-01 34_[+9(3.48e-05)]_57 chr1:161399467-161399967 2.94e-12 3_[-5(2.54e-05)]_24_[-6(2.52e-18)]_\ 8 chr17:8222652-8223152 4.97e-01 100 chr7:40986330-40986830 1.15e-01 100 chr2:38750979-38751479 6.11e-03 5_[-5(8.46e-05)]_22_[+4(3.28e-05)]_\ 35 chr17:19507905-19508405 5.59e-01 100 chr22:24555572-24556072 3.00e-01 6_[+3(5.14e-05)]_72 chr12:109052317-10905281 9.34e-01 100 chr19:47483977-47484477 9.89e-01 100 chr19:40090483-40090983 4.92e-08 17_[-7(4.59e-05)]_14_[+2(1.11e-06)]_\ 35 chr1:29236645-29237145 1.10e-02 44_[-2(4.05e-06)]_44 chr17:7242762-7243262 4.10e-01 100 chr19:49850638-49851138 5.67e-01 100 chr1:179882559-179883059 1.28e-04 27_[-4(2.90e-09)]_51 chr17:49192283-49192783 5.66e-01 100 chr22:49970630-49971130 3.60e-02 85_[-9(4.46e-05)]_6 chr1:45303824-45304324 8.99e-01 100 chr12:106357552-10635805 7.62e-01 100 chr9:136631310-136631810 4.04e-10 9_[-1(4.02e-09)]_5_[-5(8.67e-06)]_\ 50 chr19:11155436-11155936 9.02e-01 100 chr15:69452711-69453211 6.99e-01 100 chr13:112213447-11221394 6.75e-01 100 chr15:40092223-40092723 6.42e-16 14_[+2(1.24e-07)]_5_[-1(7.94e-13)]_\ 49 chr12:49130873-49131373 3.50e-01 100 chr1:8439074-8439574 7.52e-01 100 chr17:71438648-71439148 6.09e-02 27_[+5(5.20e-06)]_57 chr11:62841277-62841777 2.86e-02 [-1(9.41e-05)]_16_[-5(4.81e-05)]_48 chrX:101408063-101408563 5.64e-04 17_[-8(1.00e-06)]_61 chr14:103520922-10352142 5.18e-05 21_[+4(5.63e-08)]_29_[-8(1.63e-06)]_\ 6 chr19:33373098-33373598 8.15e-01 100 chr17:49976149-49976649 8.06e-01 100 chr1:32394031-32394531 1.33e-01 100 chr1:150876795-150877295 3.81e-02 1_[-7(4.45e-08)]_77 chr5:81751182-81751682 7.70e-01 100 chr12:109573075-10957357 1.71e-01 100 chr22:35371852-35372352 4.86e-02 24_[+9(4.03e-06)]_20_[+9(4.03e-06)]_\ 38 chr5:40835068-40835568 4.79e-01 100 chr6:124487938-124488438 1.05e-03 3_[+9(2.02e-05)]_10_[+7(4.03e-07)]_\ 56 chr6:149963559-149964059 1.63e-04 49_[+3(2.60e-09)]_29 chr4:80307265-80307765 3.18e-01 56_[+8(6.45e-05)]_22 chr6:137665265-137665765 3.74e-02 14_[-9(7.74e-05)]_10_[-8(3.16e-05)]_\ 45 chr6:26537295-26537795 3.67e-14 15_[+6(1.79e-20)]_36 chr1:234700136-234700636 7.05e-03 63_[-9(1.45e-05)]_28 chr5:134632574-134633074 8.99e-01 100 chr1:151540132-151540632 4.09e-01 100 chr18:49655987-49656487 9.58e-01 100 chr21:6565217-6565717 4.81e-01 3_[+2(4.37e-05)]_15_[+2(4.77e-05)]_\ 58 chr1:8626323-8626823 1.73e-02 13_[-7(3.57e-06)]_65 chr6:28212789-28213289 5.69e-13 47_[+10(2.45e-20)]_20 chr1:151972955-151973455 8.76e-02 4_[-9(4.03e-06)]_87 chr5:179818828-179819328 2.44e-02 24_[+3(7.97e-05)]_32_[+9(1.13e-05)]_\ 13 chr19:39390680-39391180 9.58e-01 100 chr12:54214651-54215151 5.00e-01 100 chr11:66001970-66002470 1.51e-01 7_[+8(6.45e-05)]_71 chr17:76736848-76737348 9.48e-01 100 chr10:63707263-63707763 1.76e-01 32_[-9(5.28e-05)]_7_[-9(3.48e-05)]_\ 18_[-9(4.71e-05)]_16 chr19:40831756-40832256 2.13e-01 100 chr6:11270207-11270707 8.14e-02 100 chr17:40287818-40288318 2.26e-02 70_[-8(6.52e-06)]_8 chr19:40750117-40750617 4.24e-02 100 chr11:1418084-1418584 2.62e-01 100 chr19:35154703-35155203 1.37e-02 100 chr17:46835825-46836325 5.76e-17 70_[+1(7.94e-13)]_10 chr19:11344380-11344880 1.45e-03 48_[+9(4.03e-06)]_19_[-8(3.29e-06)]_\ 2 chr9:95507787-95508287 2.83e-19 45_[+1(8.31e-11)]_2_[-4(9.59e-09)]_\ 11 chr1:40691597-40692097 4.84e-06 72_[+1(5.79e-08)]_8 chr5:69521108-69521608 1.36e-01 7_[+9(3.48e-05)]_84 chr10:7302378-7302878 2.48e-01 100 chr10:75294691-75295191 1.96e-01 100 chr1:27608573-27609073 1.23e-13 68_[+1(7.94e-13)]_12 chr1:28581502-28582002 9.23e-02 100 chr13:112346326-11234682 3.17e-01 100 chr17:16380826-16381326 3.96e-01 100 chr6:26285224-26285724 3.79e-02 74_[-9(3.80e-05)]_17 chr19:49580455-49580955 5.83e-07 21_[+4(3.72e-09)]_57 chr16:14285737-14286237 7.67e-01 100 chr12:54359114-54359614 9.01e-05 44_[-4(4.64e-08)]_34 chr3:169772623-169773123 8.26e-01 100 chr2:234969768-234970268 2.88e-11 10_[-1(2.73e-09)]_10_[-1(3.46e-10)]_\ 1_[-5(2.13e-05)]_3_[-1(1.93e-10)] chr1:229221318-229221818 1.82e-02 15_[-7(7.26e-07)]_63 chr7:99013167-99013667 4.92e-02 31_[+7(2.38e-07)]_47 chr6:43702489-43702989 6.42e-13 15_[+5(4.71e-07)]_3_[+1(7.94e-13)]_\ 1_[+5(2.84e-08)]_29 chr6:52482916-52483416 2.33e-01 100 chr19:39033049-39033549 1.48e-01 58_[-5(1.46e-06)]_26 chr17:74514329-74514829 1.38e-03 18_[+7(1.26e-08)]_10_[+7(6.76e-09)]_\ 28 chr6:134109449-134109949 5.60e-01 100 chr13:37046876-37047376 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27_[-10(5.97e-05)]_40 chr20:45972070-45972570 9.83e-01 100 chr2:240982820-240983320 3.73e-05 32_[+3(3.56e-11)]_46 chr1:167714408-167714908 1.07e-01 100 chr19:36837849-36838349 4.18e-12 41_[-2(2.06e-05)]_5_[-1(7.94e-13)]_\ [-1(5.24e-09)]_2 chr19:4723756-4724256 6.15e-01 100 chr8:37479286-37479786 6.91e-01 100 chr1:163321605-163322105 1.57e-01 42_[-7(5.11e-06)]_36 chr17:73310534-73311034 5.70e-15 10_[-1(7.94e-13)]_[-1(7.94e-13)]_1_\ [+2(4.86e-07)]_37 chr5:175378419-175378919 1.38e-01 100 chr10:75379154-75379654 5.51e-01 100 chr9:132193335-132193835 1.82e-06 [+7(6.28e-06)]_22_[-3(3.04e-10)]_34 chr5:1950665-1951165 8.35e-04 52_[-9(1.76e-05)]_5_[-2(2.90e-06)]_\ 22 chr7:133492163-133492663 2.35e-02 16_[+5(6.44e-05)]_47_[+5(1.61e-06)]_\ 5 chr15:74546070-74546570 9.72e-02 21_[+9(4.03e-06)]_70 chr7:150359969-150360469 1.13e-06 15_[+2(5.84e-06)]_17_[+2(5.50e-08)]_\ 6_[-5(5.96e-07)]_1_[-5(2.84e-08)]_5 chr12:113318868-11331936 1.46e-04 16_[+3(5.55e-10)]_62 chr10:87845956-87846456 3.87e-01 100 chr12:123232745-12323324 5.08e-02 28_[-10(4.56e-05)]_15_\ [+4(5.63e-05)]_2 chr1:32817104-32817604 8.49e-01 100 chr13:110965210-11096571 3.38e-02 18_[-9(4.71e-05)]_8_[-9(4.71e-05)]_\ 19_[-9(4.71e-05)]_8_[-9(4.71e-05)]_11 chr10:93209017-93209517 6.85e-01 19_[+5(7.39e-05)]_40_[+5(7.39e-05)]_\ 9 chr6:111568240-111568740 2.74e-12 [+1(7.94e-13)]_[+1(7.94e-13)]_6_\ [+1(7.56e-07)]_34 chr1:81032902-81033402 5.71e-01 100 chr2:27663586-27664086 5.77e-01 100 chr17:18087645-18088145 2.01e-01 100 chr10:22552801-22553301 2.67e-02 90_[-9(3.80e-05)]_1 chr19:40920962-40921462 2.14e-03 32_[+9(3.48e-05)]_59 chr1:46132517-46133017 9.38e-02 100 chr16:12120417-12120917 3.50e-10 [+7(2.63e-06)]_23_[+1(3.48e-09)]_35 chr12:124914582-12491508 2.36e-01 47_[-6(1.54e-05)]_4 chr6:43321955-43322455 4.43e-02 17_[-5(7.30e-07)]_67 chr1:37989842-37990342 8.50e-01 100 chr9:18976699-18977199 9.52e-03 19_[-5(1.61e-06)]_65 chr3:9731385-9731885 8.68e-01 100 chr19:17337113-17337613 2.46e-01 100 chr10:44752841-44753341 4.70e-01 22_[+5(8.09e-05)]_62 chr19:39411875-39412375 2.42e-02 38_[+5(2.72e-06)]_46 chr1:93078915-93079415 6.11e-01 100 chr1:63523152-63523652 6.58e-01 100 chr13:113208503-11320900 8.66e-01 100 chr22:40711455-40711955 9.35e-03 9_[-5(2.39e-05)]_22_[-9(1.76e-05)]_\ 44 chr1:44213177-44213677 9.95e-01 100 chr19:41310148-41310648 5.67e-01 100 chr12:123601806-12360230 6.00e-01 100 chr1:25998107-25998607 2.78e-01 100 chr11:723184-723684 3.80e-05 41_[+3(1.33e-11)]_37 chr6:85642962-85643462 5.77e-06 11_[+4(4.16e-05)]_18_[+8(3.29e-06)]_\ 5_[+4(2.29e-08)] chr19:37655823-37656323 7.08e-01 100 chr17:77233791-77234291 1.43e-01 100 chr19:36604746-36605246 1.26e-09 25_[-1(4.55e-10)]_55 chr1:151070354-151070854 7.35e-01 100 chr1:81126914-81127414 3.37e-01 100 chr1:183471806-183472306 5.44e-04 29_[-8(2.55e-06)]_11_[-4(1.14e-06)]_\ 16 chr19:35643382-35643882 9.97e-01 100 chr17:51153299-51153799 8.09e-01 100 chr9:133417907-133418407 8.09e-01 100 chr5:94469749-94470249 1.53e-02 4_[-5(7.74e-05)]_11_[-3(3.01e-05)]_\ 47 chr11:47578726-47579226 4.43e-01 100 chr19:14396688-14397188 5.80e-03 47_[+3(3.27e-08)]_31 chr1:1374990-1375490 9.83e-01 100 chr12:12266924-12267424 2.14e-02 23_[+2(3.28e-05)]_65 chr19:1021384-1021884 6.23e-01 100 chr10:93702404-93702904 8.67e-02 69_[-4(1.82e-06)]_9 chr17:3890051-3890551 1.10e-01 86_[-9(4.03e-06)]_5 chrX:73944015-73944515 8.29e-01 100 chr1:16122826-16123326 4.08e-01 100 chr7:435508-436008 1.55e-03 16_[-3(3.67e-09)]_62 chr3:53347401-53347901 1.43e-01 69_[+2(5.86e-05)]_19 chr10:101442023-10144252 6.57e-23 41_[+4(9.73e-11)]_11_[+1(7.94e-13)]_\ 6 chr22:27766628-27767128 2.01e-08 26_[+3(7.36e-11)]_17_[+8(4.21e-07)]_\ 13 chr19:1383508-1384008 2.09e-01 100 chr8:37302627-37303127 9.33e-02 56_[-7(1.11e-05)]_22 chr17:60173306-60173806 2.64e-01 100 chr19:35947339-35947839 8.76e-15 58_[+1(7.94e-13)]_[+1(7.94e-13)]_2 chr1:3992015-3992515 9.15e-05 28_[+7(1.19e-09)]_50 chr9:85743181-85743681 5.24e-01 100 chr19:28425257-28425757 1.25e-02 7_[-4(4.43e-07)]_71 chr21:39313502-39314002 3.80e-01 100 chr5:124734995-124735495 1.44e-02 67_[-8(1.22e-06)]_11 chr12:57111980-57112480 1.55e-14 42_[-1(7.94e-13)]_[-1(7.94e-13)]_18 chr19:4207117-4207617 1.77e-06 37_[+3(6.92e-12)]_41 chr6:82260143-82260643 2.21e-01 100 chr20:58650953-58651453 2.19e-02 45_[-4(7.47e-07)]_33 chr1:234723932-234724432 5.08e-07 2_[-4(4.88e-10)]_7_[-4(4.20e-08)]_\ 47 chr17:74513994-74514494 2.73e-03 6_[+7(1.26e-08)]_7_[+7(4.03e-05)]_\ 10_[+7(9.49e-08)]_11 chr19:4208697-4209197 2.74e-05 37_[+3(6.81e-13)]_41 chr17:45148332-45148832 2.59e-06 23_[-4(4.21e-09)]_32_[-8(2.55e-06)]_\ 1 chr19:10394952-10395452 2.01e-04 7_[+3(5.55e-10)]_71 chr19:7944140-7944640 2.37e-04 23_[+3(9.66e-11)]_55 chr1:155244582-155245082 5.19e-09 3_[-4(7.57e-10)]_13_[-8(2.14e-06)]_\ 7_[-4(4.90e-14)]_11 chr1:236097024-236097524 1.95e-01 11_[-9(1.45e-05)]_20_[-9(1.45e-05)]_\ 20_[-9(1.45e-05)]_22 chr17:78558321-78558821 2.34e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: kadru ********************************************************************************