Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
GTGTGTGTGTGTGTGTGTGT 20 GTGTGTGTGTGTGTGTGTGT
CACACACACACA 12 CACACACACACA
GYAYGCYGYCACCARGTGGCGG 22 GTACGCTGCCACCAGGTGGCGG
TCYYTCYCTCYCYYYCTCYCTC 22 TCTCTCTCTCTCTCTCTCTCTC
TKTKTKTKTKTKTRTD 16 TGTGTGTTTGTGTGTT
ARTGGATAASGCRTYNGMCTCCKRAKCNRRRGRTYSYGGGTTCGAGTCC 49 AATGGATAAGGCATTGGCCTCCTAAGCCAGGGATTGTGGGTTCGAGTCC
RVTGMTGTVATKRBAGRNGTGA 22 AGTGCTGTAATTAGAGGTGTGA
YCTYTYYYYTCYBCCTCSCYCH 22 CCTCTTCCTTCTCCCTCCCTCT
GMTGASTCA 9 GCTGAGTCA
GWCRMGGTGGCCGAGTGGTTAAGGCGWTGGACT 33 GACGAGGTGGCCGAGTGGTTAAGGCGATGGACT

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.221 C 0.279 G 0.279 T 0.221


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
GYAYGCYGYCACCARGTGGCGG MEME-3 chr19 + 4208934 4208955 6.02e-13 2.28e-07 GTATGCTGCCACCAAGTGGCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr1 - 25520637 25520658 8.04e-13 2.28e-07 GTATGCTGCCACCAGGTGGCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr7 - 138738904 138738925 2.55e-12 4.83e-07 GCATGCTGCCACCAGGTGGCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr1 + 22674314 22674335 3.83e-12 5.44e-07 GTACACTGCCACCAGGTGGCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr19 + 4207354 4207375 6.11e-12 6.93e-07 GTATGCTGCCACCAAGTGGCAG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr20 + 60137830 60137851 7.46e-12 7.06e-07 GTATGCTGTCACCAGGTGGCAG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr11 + 723425 723446 1.04e-11 8.43e-07 GTACGCTGCCACCAGGTGGTGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr12 - 113384046 113384067 1.34e-11 9.52e-07 GCATGCTGCCACCAAGTGGCAG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr10 - 97117565 97117586 2.54e-11 1.6e-06 GTACACTGTCACCAGGTGGCAG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr2 + 240983052 240983073 3.32e-11 1.89e-06 GTACGCTGTCACCAGGAGGCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr16 + 1181493 1181514 4.85e-11 2.5e-06 GCACGCTGCCACCAAGTGGCTG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr22 + 27766854 27766875 7.22e-11 3.42e-06 GTACGCTGTCACCAAGGGGAGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr19 + 770412 770433 8.72e-11 3.81e-06 GCACGCTGCCACCAGAGGGCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr19 + 7944363 7944384 9.49e-11 3.85e-06 GAATGCCGCCACCAGGTGGCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr15 + 67863572 67863593 1.97e-10 7.46e-06 GCACGCCGCCACCAGAGGGCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr9 - 132193579 132193600 2.44e-10 8.67e-06 GTACGCTGGCACCAAGTGGCGT
GYAYGCYGYCACCARGTGGCGG MEME-3 chr12 + 113319084 113319105 5.24e-10 1.75e-05 GCACGCCGTCACCAAGTGGTGT
GYAYGCYGYCACCARGTGGCGG MEME-3 chr19 + 10395159 10395180 5.87e-10 1.85e-05 GCACAGCGTCACCAAGTGGCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr6 + 149963808 149963829 2.5e-09 7.48e-05 GCACGCCGCCACCAAGCCGCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr7 - 435724 435745 3.92e-09 0.000111 GTACGCCGTCACCACAGAGCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chrX + 47213166 47213187 1.01e-08 0.000273 GCACCACGTCACCAGGTGGGGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr1 - 3403880 3403901 2.4e-08 0.000618 GTTTGCCGTCCCCAGGGAGCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr19 + 14396935 14396956 3.84e-08 0.000948 GTTGAAGGTCACCAAGTGGCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr1 + 25430270 25430291 6.74e-08 0.00159 GCGCGCTGTCACCACGTCGCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr19 - 35931797 35931818 7.51e-08 0.00171 TCACTCAGCCACCACGTGGAGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr7 - 99013356 99013377 8.62e-08 0.00188 GCACGCTGTCACCAAGAGGCTA
GYAYGCYGYCACCARGTGGCGG MEME-3 chr1 + 25520632 25520653 1.22e-07 0.00256 TTACACCGCCACCTGGTGGCAG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr6 + 43702947 43702968 2.67e-07 0.00541 GTACACAGGCCCCACAGGGCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr1 - 25998304 25998325 1.06e-06 0.0207 TCTTCAGGCCACCAGGGGGAGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr1 - 22674319 22674340 1.5e-06 0.0283 GCCTACCGCCACCTGGTGGCAG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr20 + 52972301 52972322 1.69e-06 0.031 TCTCCCTGTCATCAGGTCGCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr19 - 7944368 7944389 1.92e-06 0.0341 AAATACCGCCACCTGGTGGCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr19 - 4208942 4208963 2.32e-06 0.0399 GCACACTGCCGCCACTTGGTGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chrX + 47213250 47213271 2.5e-06 0.0411 ATACCCTGTCACCAGGTGAGGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr17 - 7243179 7243200 2.53e-06 0.0411 GGGCGCTGCCCCCAGGTGGCTG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr14 + 70359653 70359674 3.61e-06 0.0569 TCACGCTCTCACCAAGACGAGT
GYAYGCYGYCACCARGTGGCGG MEME-3 chr2 - 191322157 191322178 3.79e-06 0.0581 GCATGAAACCACCACAGGGGGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr9 + 136631676 136631697 5.08e-06 0.0759 GCACACAGCCACCCGGGGCCAG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr21 + 25607588 25607609 5.38e-06 0.0769 GCTCGCCTCCACCGGGGGGCGT
GYAYGCYGYCACCARGTGGCGG MEME-3 chr7 + 138738899 138738920 5.42e-06 0.0769 CAAGGCCGCCACCTGGTGGCAG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr9 - 136631681 136631702 6.04e-06 0.0836 GCTCCCTGGCCCCGGGTGGCTG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr1 - 109100440 109100461 7.96e-06 0.107 GCACAGCGCCCCGAGGGGGCTT
GYAYGCYGYCACCARGTGGCGG MEME-3 chr19 - 770417 770438 8.08e-06 0.107 GTTTGCCGCCCTCTGGTGGCAG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr10 + 15434241 15434262 1.07e-05 0.139 TCCGTCAGCCACCAGAGGGCAG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr13 + 110870498 110870519 1.12e-05 0.142 CCAGGCTGCCCACAGGAGGCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr21 - 25607593 25607614 1.24e-05 0.147 GCCTGACGCCCCCCGGTGGAGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr18 - 58781732 58781753 1.24e-05 0.147 TAACACTGCCACCTGGTGGCTA
GYAYGCYGYCACCARGTGGCGG MEME-3 chr1 + 151281618 151281639 1.25e-05 0.147 TTACGCTGTCGCCCAGGAGCTG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr12 - 57782676 57782697 1.52e-05 0.176 GTATGGTGCCACCTGCTGGCCG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr1 - 109984582 109984603 1.57e-05 0.178 CCTTTGTGCCACCAGGTGGCAC
GYAYGCYGYCACCARGTGGCGG MEME-3 chr1 - 28648575 28648596 1.63e-05 0.182 TTTCTCTGTCACCAAAGCAGGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr19 - 39411973 39411994 1.73e-05 0.189 CGTCCCAGCCACCAGGTGGGGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr7 + 138738896 138738917 1.86e-05 0.199 GCACAAGGCCGCCACCTGGTGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr21 + 43728863 43728884 1.94e-05 0.204 GCAGGAAGTTCCCAGGAGGAAG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr3 + 169772817 169772838 2.03e-05 0.21 GACTTCTGTCACCAGGTAAGGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr6 + 11270316 11270337 2.1e-05 0.211 TTACAGTATCACCAAATGCAGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr17 + 45894938 45894959 2.11e-05 0.211 TCGCGCAGACCCCAGGTGGAGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr6 + 43702909 43702930 2.16e-05 0.211 TCAGTGCGTCATCAGAGGGTGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr13 - 51452743 51452764 2.34e-05 0.224 GCAGGCAGGCAGGAGGAGGCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr7 - 141738193 141738214 2.36e-05 0.224 GATCAACGCCGCCAAGTGGTGA
GYAYGCYGYCACCARGTGGCGG MEME-3 chr19 + 33797024 33797045 2.52e-05 0.233 CAACCCTGCCCCGAAGTGGCTG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr3 - 134795593 134795614 2.55e-05 0.233 GCAGGCCGAGACCAAGCCGAGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr7 - 91264390 91264411 2.58e-05 0.233 TCTGTCTTTCACCAGGAGGGAG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr16 - 30875144 30875165 2.68e-05 0.233 GCATCGTGGCCCCTCGGGGCGT
GYAYGCYGYCACCARGTGGCGG MEME-3 chr18 + 58781727 58781748 2.7e-05 0.233 GTGAATAGCCACCAGGTGGCAG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr1 - 229894048 229894069 2.71e-05 0.233 GCTCCATGTCACCACAGTGGTG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr6 + 131628394 131628415 2.75e-05 0.233 GCAGGCCGCCACCTCCCGGCTG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr1 + 214439525 214439546 3.04e-05 0.254 TTATGCTGGCAGCAAACGTCAG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr19 + 39126218 39126239 3.13e-05 0.258 GAAGGCTGCCCCCACGAGGGTC
GYAYGCYGYCACCARGTGGCGG MEME-3 chr6 - 52243708 52243729 3.24e-05 0.262 TTAGTGTGTGCCCAGGTGGTGT
GYAYGCYGYCACCARGTGGCGG MEME-3 chr19 - 12938661 12938682 3.27e-05 0.262 GCATGGCGGGCCGAGGGGGCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr7 + 128343676 128343697 3.4e-05 0.268 TTTTTCAGTCACCACGAAGCAC
GYAYGCYGYCACCARGTGGCGG MEME-3 chr9 - 95507935 95507956 3.67e-05 0.28 GTCTGAGGTCCGCAGGGGGTGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr11 - 723430 723451 3.68e-05 0.28 ACTTGCCACCACCTGGTGGCAG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr1 - 151540496 151540517 3.69e-05 0.28 GATGTCAGCCAACACGGCGCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr5 + 138032854 138032875 3.88e-05 0.288 GAACTGAGGCCCCAAGTGGCTC
GYAYGCYGYCACCARGTGGCGG MEME-3 chr8 + 144456788 144456809 3.91e-05 0.288 GGAGACTGGCATCACATGGGGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr17 - 76737248 76737269 3.99e-05 0.291 TCCCAGTGTCCCCACGCGGAAG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr19 - 1021771 1021792 4.11e-05 0.295 GCACAGCGCCACGCAGGAGTAG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr14 + 20469599 20469620 4.23e-05 0.3 GCACACTGGGCCCAGAGGGAGC
GYAYGCYGYCACCARGTGGCGG MEME-3 chr5 + 1950675 1950696 4.33e-05 0.304 TCACGACCTCACCAAGTGCCCG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr2 - 240983057 240983078 4.62e-05 0.319 GTTCACCGCCTCCTGGTGACAG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr22 + 24555778 24555799 4.66e-05 0.319 CTTTGCCGGCCCCAAGGGTCGT
GYAYGCYGYCACCARGTGGCGG MEME-3 chr12 - 124939645 124939666 4.83e-05 0.319 GTTCGATTCCCCGACGGGGAGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr19 + 35931789 35931810 4.86e-05 0.319 CGTTGCTGCCTCCACGTGGTGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chrX - 47213171 47213192 4.89e-05 0.319 GCAGGCCCCCACCTGGTGACGT
GYAYGCYGYCACCARGTGGCGG MEME-3 chr19 - 58519777 58519798 4.89e-05 0.319 GTAGTCGGTCAGGAGGAAGCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr15 + 70097598 70097619 5.07e-05 0.325 GCACCGCGTCCCCACCGAGGAG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr12 - 123233052 123233073 5.09e-05 0.325 GTAAGCGGCCACCAGCCTGCAG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr19 + 40832191 40832212 5.47e-05 0.345 GTACCCTGTCTGCAGATTGAGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr21 - 37073769 37073790 5.6e-05 0.346 CCACGCAGCCGCCAGGGAGCGC
GYAYGCYGYCACCARGTGGCGG MEME-3 chr5 - 94469980 94470001 5.61e-05 0.346 GCTGAGAGCCACCACTGGGATG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr17 + 40140684 40140705 5.94e-05 0.362 gcTCTCTGCCTTCACAGCGCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr12 + 124939637 124939658 6.34e-05 0.383 GTACCCGGCctccccgtcgggg
GYAYGCYGYCACCARGTGGCGG MEME-3 chr18 - 59455478 59455499 6.47e-05 0.383 CCTGAATGGCCCCAGATGGAGT
GYAYGCYGYCACCARGTGGCGG MEME-3 chr17 - 997258 997279 6.48e-05 0.383 GCTCCCAGGCTCCAGGAGCCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr19 - 39390738 39390759 6.68e-05 0.391 GAACAACGTCACCAGCCCCCAG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr14 + 20663146 20663167 6.87e-05 0.398 TTGACCAGGCACCAGGTGGCAT
GYAYGCYGYCACCARGTGGCGG MEME-3 chr1 + 109984577 109984598 7.06e-05 0.405 TGATGGTGCCACCTGGTGGCAC
GYAYGCYGYCACCARGTGGCGG MEME-3 chr12 - 55829521 55829542 7.29e-05 0.414 TCACCCTGGCCCCAGGCCGGGC
GYAYGCYGYCACCARGTGGCGG MEME-3 chr10 - 102399679 102399700 7.65e-05 0.43 CTGCGCCGTCAGCAGGTGGCGC
GYAYGCYGYCACCARGTGGCGG MEME-3 chr22 - 20496061 20496082 7.8e-05 0.434 GTTCGGCCCCGCCAAGTGCCAG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr17 + 48492894 48492915 8.1e-05 0.443 GTTTGCTGCTGCCACGTCTCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr10 - 101442384 101442405 8.11e-05 0.443 ATAGGCTGCCATTAGATAGCAG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr5 + 179819052 179819073 8.36e-05 0.452 GATGGGTGGCAGCAGGGGCCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr10 + 72354893 72354914 8.65e-05 0.46 CCATGGCGGAACCAGAACGCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr16 - 31033140 31033161 8.67e-05 0.46 CCACACGGCCCCCGCGAGGTGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr15 + 69453136 69453157 8.8e-05 0.461 GAACACAGGCCGCATAGGGCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr1 - 26621002 26621023 8.93e-05 0.461 GTTCCCCTCCCCCACGAAGAAT
GYAYGCYGYCACCARGTGGCGG MEME-3 chr19 - 35820160 35820181 8.93e-05 0.461 CCAAGCTCCCACCAGGGTGCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr19 - 28425313 28425334 9.27e-05 0.471 TATCTGCACCCCCAAGAGGCAG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr17 + 71438734 71438755 9.34e-05 0.471 ACAGGATGCCAACAGATGGCAA
GYAYGCYGYCACCARGTGGCGG MEME-3 chr19 - 4208715 4208736 9.38e-05 0.471 GCATTCTGTTCCCAGGCCCAGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr14 + 103521030 103521051 9.48e-05 0.471 GTCCTGAGCCCCCACGGGCCGG
GYAYGCYGYCACCARGTGGCGG MEME-3 chr1 - 42335442 42335463 9.57e-05 0.471 GCACAAGGACCCCAAGTCGCTC
GYAYGCYGYCACCARGTGGCGG MEME-3 chr12 - 131711084 131711105 9.62e-05 0.471 ATAGCGGGCCACAAAATGGTGG

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_2 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif GYAYGCYGYCACCARGTGGCGG /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_2 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


Go to top