Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
GTGTGTGTGTGTGTGTGTGT | 20 | GTGTGTGTGTGTGTGTGTGT |
CACACACACACA | 12 | CACACACACACA |
GYAYGCYGYCACCARGTGGCGG | 22 | GTACGCTGCCACCAGGTGGCGG |
TCYYTCYCTCYCYYYCTCYCTC | 22 | TCTCTCTCTCTCTCTCTCTCTC |
TKTKTKTKTKTKTRTD | 16 | TGTGTGTTTGTGTGTT |
ARTGGATAASGCRTYNGMCTCCKRAKCNRRRGRTYSYGGGTTCGAGTCC | 49 | AATGGATAAGGCATTGGCCTCCTAAGCCAGGGATTGTGGGTTCGAGTCC |
RVTGMTGTVATKRBAGRNGTGA | 22 | AGTGCTGTAATTAGAGGTGTGA |
YCTYTYYYYTCYBCCTCSCYCH | 22 | CCTCTTCCTTCTCCCTCCCTCT |
GMTGASTCA | 9 | GCTGAGTCA |
GWCRMGGTGGCCGAGTGGTTAAGGCGWTGGACT | 33 | GACGAGGTGGCCGAGTGGTTAAGGCGATGGACT |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.221 C 0.279 G 0.279 T 0.221
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr19 | + | 4208934 | 4208955 | 6.02e-13 | 2.28e-07 | GTATGCTGCCACCAAGTGGCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr1 | - | 25520637 | 25520658 | 8.04e-13 | 2.28e-07 | GTATGCTGCCACCAGGTGGCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr7 | - | 138738904 | 138738925 | 2.55e-12 | 4.83e-07 | GCATGCTGCCACCAGGTGGCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr1 | + | 22674314 | 22674335 | 3.83e-12 | 5.44e-07 | GTACACTGCCACCAGGTGGCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr19 | + | 4207354 | 4207375 | 6.11e-12 | 6.93e-07 | GTATGCTGCCACCAAGTGGCAG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr20 | + | 60137830 | 60137851 | 7.46e-12 | 7.06e-07 | GTATGCTGTCACCAGGTGGCAG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr11 | + | 723425 | 723446 | 1.04e-11 | 8.43e-07 | GTACGCTGCCACCAGGTGGTGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr12 | - | 113384046 | 113384067 | 1.34e-11 | 9.52e-07 | GCATGCTGCCACCAAGTGGCAG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr10 | - | 97117565 | 97117586 | 2.54e-11 | 1.6e-06 | GTACACTGTCACCAGGTGGCAG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr2 | + | 240983052 | 240983073 | 3.32e-11 | 1.89e-06 | GTACGCTGTCACCAGGAGGCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr16 | + | 1181493 | 1181514 | 4.85e-11 | 2.5e-06 | GCACGCTGCCACCAAGTGGCTG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr22 | + | 27766854 | 27766875 | 7.22e-11 | 3.42e-06 | GTACGCTGTCACCAAGGGGAGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr19 | + | 770412 | 770433 | 8.72e-11 | 3.81e-06 | GCACGCTGCCACCAGAGGGCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr19 | + | 7944363 | 7944384 | 9.49e-11 | 3.85e-06 | GAATGCCGCCACCAGGTGGCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr15 | + | 67863572 | 67863593 | 1.97e-10 | 7.46e-06 | GCACGCCGCCACCAGAGGGCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr9 | - | 132193579 | 132193600 | 2.44e-10 | 8.67e-06 | GTACGCTGGCACCAAGTGGCGT |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr12 | + | 113319084 | 113319105 | 5.24e-10 | 1.75e-05 | GCACGCCGTCACCAAGTGGTGT |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr19 | + | 10395159 | 10395180 | 5.87e-10 | 1.85e-05 | GCACAGCGTCACCAAGTGGCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr6 | + | 149963808 | 149963829 | 2.5e-09 | 7.48e-05 | GCACGCCGCCACCAAGCCGCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr7 | - | 435724 | 435745 | 3.92e-09 | 0.000111 | GTACGCCGTCACCACAGAGCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chrX | + | 47213166 | 47213187 | 1.01e-08 | 0.000273 | GCACCACGTCACCAGGTGGGGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr1 | - | 3403880 | 3403901 | 2.4e-08 | 0.000618 | GTTTGCCGTCCCCAGGGAGCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr19 | + | 14396935 | 14396956 | 3.84e-08 | 0.000948 | GTTGAAGGTCACCAAGTGGCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr1 | + | 25430270 | 25430291 | 6.74e-08 | 0.00159 | GCGCGCTGTCACCACGTCGCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr19 | - | 35931797 | 35931818 | 7.51e-08 | 0.00171 | TCACTCAGCCACCACGTGGAGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr7 | - | 99013356 | 99013377 | 8.62e-08 | 0.00188 | GCACGCTGTCACCAAGAGGCTA |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr1 | + | 25520632 | 25520653 | 1.22e-07 | 0.00256 | TTACACCGCCACCTGGTGGCAG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr6 | + | 43702947 | 43702968 | 2.67e-07 | 0.00541 | GTACACAGGCCCCACAGGGCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr1 | - | 25998304 | 25998325 | 1.06e-06 | 0.0207 | TCTTCAGGCCACCAGGGGGAGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr1 | - | 22674319 | 22674340 | 1.5e-06 | 0.0283 | GCCTACCGCCACCTGGTGGCAG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr20 | + | 52972301 | 52972322 | 1.69e-06 | 0.031 | TCTCCCTGTCATCAGGTCGCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr19 | - | 7944368 | 7944389 | 1.92e-06 | 0.0341 | AAATACCGCCACCTGGTGGCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr19 | - | 4208942 | 4208963 | 2.32e-06 | 0.0399 | GCACACTGCCGCCACTTGGTGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chrX | + | 47213250 | 47213271 | 2.5e-06 | 0.0411 | ATACCCTGTCACCAGGTGAGGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr17 | - | 7243179 | 7243200 | 2.53e-06 | 0.0411 | GGGCGCTGCCCCCAGGTGGCTG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr14 | + | 70359653 | 70359674 | 3.61e-06 | 0.0569 | TCACGCTCTCACCAAGACGAGT |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr2 | - | 191322157 | 191322178 | 3.79e-06 | 0.0581 | GCATGAAACCACCACAGGGGGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr9 | + | 136631676 | 136631697 | 5.08e-06 | 0.0759 | GCACACAGCCACCCGGGGCCAG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr21 | + | 25607588 | 25607609 | 5.38e-06 | 0.0769 | GCTCGCCTCCACCGGGGGGCGT |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr7 | + | 138738899 | 138738920 | 5.42e-06 | 0.0769 | CAAGGCCGCCACCTGGTGGCAG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr9 | - | 136631681 | 136631702 | 6.04e-06 | 0.0836 | GCTCCCTGGCCCCGGGTGGCTG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr1 | - | 109100440 | 109100461 | 7.96e-06 | 0.107 | GCACAGCGCCCCGAGGGGGCTT |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr19 | - | 770417 | 770438 | 8.08e-06 | 0.107 | GTTTGCCGCCCTCTGGTGGCAG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr10 | + | 15434241 | 15434262 | 1.07e-05 | 0.139 | TCCGTCAGCCACCAGAGGGCAG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr13 | + | 110870498 | 110870519 | 1.12e-05 | 0.142 | CCAGGCTGCCCACAGGAGGCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr21 | - | 25607593 | 25607614 | 1.24e-05 | 0.147 | GCCTGACGCCCCCCGGTGGAGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr18 | - | 58781732 | 58781753 | 1.24e-05 | 0.147 | TAACACTGCCACCTGGTGGCTA |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr1 | + | 151281618 | 151281639 | 1.25e-05 | 0.147 | TTACGCTGTCGCCCAGGAGCTG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr12 | - | 57782676 | 57782697 | 1.52e-05 | 0.176 | GTATGGTGCCACCTGCTGGCCG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr1 | - | 109984582 | 109984603 | 1.57e-05 | 0.178 | CCTTTGTGCCACCAGGTGGCAC |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr1 | - | 28648575 | 28648596 | 1.63e-05 | 0.182 | TTTCTCTGTCACCAAAGCAGGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr19 | - | 39411973 | 39411994 | 1.73e-05 | 0.189 | CGTCCCAGCCACCAGGTGGGGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr7 | + | 138738896 | 138738917 | 1.86e-05 | 0.199 | GCACAAGGCCGCCACCTGGTGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr21 | + | 43728863 | 43728884 | 1.94e-05 | 0.204 | GCAGGAAGTTCCCAGGAGGAAG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr3 | + | 169772817 | 169772838 | 2.03e-05 | 0.21 | GACTTCTGTCACCAGGTAAGGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr6 | + | 11270316 | 11270337 | 2.1e-05 | 0.211 | TTACAGTATCACCAAATGCAGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr17 | + | 45894938 | 45894959 | 2.11e-05 | 0.211 | TCGCGCAGACCCCAGGTGGAGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr6 | + | 43702909 | 43702930 | 2.16e-05 | 0.211 | TCAGTGCGTCATCAGAGGGTGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr13 | - | 51452743 | 51452764 | 2.34e-05 | 0.224 | GCAGGCAGGCAGGAGGAGGCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr7 | - | 141738193 | 141738214 | 2.36e-05 | 0.224 | GATCAACGCCGCCAAGTGGTGA |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr19 | + | 33797024 | 33797045 | 2.52e-05 | 0.233 | CAACCCTGCCCCGAAGTGGCTG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr3 | - | 134795593 | 134795614 | 2.55e-05 | 0.233 | GCAGGCCGAGACCAAGCCGAGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr7 | - | 91264390 | 91264411 | 2.58e-05 | 0.233 | TCTGTCTTTCACCAGGAGGGAG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr16 | - | 30875144 | 30875165 | 2.68e-05 | 0.233 | GCATCGTGGCCCCTCGGGGCGT |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr18 | + | 58781727 | 58781748 | 2.7e-05 | 0.233 | GTGAATAGCCACCAGGTGGCAG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr1 | - | 229894048 | 229894069 | 2.71e-05 | 0.233 | GCTCCATGTCACCACAGTGGTG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr6 | + | 131628394 | 131628415 | 2.75e-05 | 0.233 | GCAGGCCGCCACCTCCCGGCTG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr1 | + | 214439525 | 214439546 | 3.04e-05 | 0.254 | TTATGCTGGCAGCAAACGTCAG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr19 | + | 39126218 | 39126239 | 3.13e-05 | 0.258 | GAAGGCTGCCCCCACGAGGGTC |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr6 | - | 52243708 | 52243729 | 3.24e-05 | 0.262 | TTAGTGTGTGCCCAGGTGGTGT |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr19 | - | 12938661 | 12938682 | 3.27e-05 | 0.262 | GCATGGCGGGCCGAGGGGGCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr7 | + | 128343676 | 128343697 | 3.4e-05 | 0.268 | TTTTTCAGTCACCACGAAGCAC |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr9 | - | 95507935 | 95507956 | 3.67e-05 | 0.28 | GTCTGAGGTCCGCAGGGGGTGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr11 | - | 723430 | 723451 | 3.68e-05 | 0.28 | ACTTGCCACCACCTGGTGGCAG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr1 | - | 151540496 | 151540517 | 3.69e-05 | 0.28 | GATGTCAGCCAACACGGCGCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr5 | + | 138032854 | 138032875 | 3.88e-05 | 0.288 | GAACTGAGGCCCCAAGTGGCTC |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr8 | + | 144456788 | 144456809 | 3.91e-05 | 0.288 | GGAGACTGGCATCACATGGGGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr17 | - | 76737248 | 76737269 | 3.99e-05 | 0.291 | TCCCAGTGTCCCCACGCGGAAG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr19 | - | 1021771 | 1021792 | 4.11e-05 | 0.295 | GCACAGCGCCACGCAGGAGTAG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr14 | + | 20469599 | 20469620 | 4.23e-05 | 0.3 | GCACACTGGGCCCAGAGGGAGC |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr5 | + | 1950675 | 1950696 | 4.33e-05 | 0.304 | TCACGACCTCACCAAGTGCCCG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr2 | - | 240983057 | 240983078 | 4.62e-05 | 0.319 | GTTCACCGCCTCCTGGTGACAG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr22 | + | 24555778 | 24555799 | 4.66e-05 | 0.319 | CTTTGCCGGCCCCAAGGGTCGT |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr12 | - | 124939645 | 124939666 | 4.83e-05 | 0.319 | GTTCGATTCCCCGACGGGGAGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr19 | + | 35931789 | 35931810 | 4.86e-05 | 0.319 | CGTTGCTGCCTCCACGTGGTGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chrX | - | 47213171 | 47213192 | 4.89e-05 | 0.319 | GCAGGCCCCCACCTGGTGACGT |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr19 | - | 58519777 | 58519798 | 4.89e-05 | 0.319 | GTAGTCGGTCAGGAGGAAGCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr15 | + | 70097598 | 70097619 | 5.07e-05 | 0.325 | GCACCGCGTCCCCACCGAGGAG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr12 | - | 123233052 | 123233073 | 5.09e-05 | 0.325 | GTAAGCGGCCACCAGCCTGCAG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr19 | + | 40832191 | 40832212 | 5.47e-05 | 0.345 | GTACCCTGTCTGCAGATTGAGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr21 | - | 37073769 | 37073790 | 5.6e-05 | 0.346 | CCACGCAGCCGCCAGGGAGCGC |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr5 | - | 94469980 | 94470001 | 5.61e-05 | 0.346 | GCTGAGAGCCACCACTGGGATG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr17 | + | 40140684 | 40140705 | 5.94e-05 | 0.362 | gcTCTCTGCCTTCACAGCGCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr12 | + | 124939637 | 124939658 | 6.34e-05 | 0.383 | GTACCCGGCctccccgtcgggg |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr18 | - | 59455478 | 59455499 | 6.47e-05 | 0.383 | CCTGAATGGCCCCAGATGGAGT |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr17 | - | 997258 | 997279 | 6.48e-05 | 0.383 | GCTCCCAGGCTCCAGGAGCCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr19 | - | 39390738 | 39390759 | 6.68e-05 | 0.391 | GAACAACGTCACCAGCCCCCAG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr14 | + | 20663146 | 20663167 | 6.87e-05 | 0.398 | TTGACCAGGCACCAGGTGGCAT |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr1 | + | 109984577 | 109984598 | 7.06e-05 | 0.405 | TGATGGTGCCACCTGGTGGCAC |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr12 | - | 55829521 | 55829542 | 7.29e-05 | 0.414 | TCACCCTGGCCCCAGGCCGGGC |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr10 | - | 102399679 | 102399700 | 7.65e-05 | 0.43 | CTGCGCCGTCAGCAGGTGGCGC |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr22 | - | 20496061 | 20496082 | 7.8e-05 | 0.434 | GTTCGGCCCCGCCAAGTGCCAG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr17 | + | 48492894 | 48492915 | 8.1e-05 | 0.443 | GTTTGCTGCTGCCACGTCTCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr10 | - | 101442384 | 101442405 | 8.11e-05 | 0.443 | ATAGGCTGCCATTAGATAGCAG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr5 | + | 179819052 | 179819073 | 8.36e-05 | 0.452 | GATGGGTGGCAGCAGGGGCCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr10 | + | 72354893 | 72354914 | 8.65e-05 | 0.46 | CCATGGCGGAACCAGAACGCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr16 | - | 31033140 | 31033161 | 8.67e-05 | 0.46 | CCACACGGCCCCCGCGAGGTGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr15 | + | 69453136 | 69453157 | 8.8e-05 | 0.461 | GAACACAGGCCGCATAGGGCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr1 | - | 26621002 | 26621023 | 8.93e-05 | 0.461 | GTTCCCCTCCCCCACGAAGAAT |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr19 | - | 35820160 | 35820181 | 8.93e-05 | 0.461 | CCAAGCTCCCACCAGGGTGCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr19 | - | 28425313 | 28425334 | 9.27e-05 | 0.471 | TATCTGCACCCCCAAGAGGCAG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr17 | + | 71438734 | 71438755 | 9.34e-05 | 0.471 | ACAGGATGCCAACAGATGGCAA |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr19 | - | 4208715 | 4208736 | 9.38e-05 | 0.471 | GCATTCTGTTCCCAGGCCCAGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr14 | + | 103521030 | 103521051 | 9.48e-05 | 0.471 | GTCCTGAGCCCCCACGGGCCGG |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr1 | - | 42335442 | 42335463 | 9.57e-05 | 0.471 | GCACAAGGACCCCAAGTCGCTC |
GYAYGCYGYCACCARGTGGCGG | MEME-3 | chr12 | - | 131711084 | 131711105 | 9.62e-05 | 0.471 | ATAGCGGGCCACAAAATGGTGG |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_2 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif GYAYGCYGYCACCARGTGGCGG /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_2 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF391.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.