# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF37A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF37A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF37A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF37A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 17:18:54 PDT 2018) # negatives: 599 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF37A.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 17:18:55 PDT 2018) # host: indra # when: Thu May 10 17:59:44 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.230 C 0.268 G 0.269 T 0.234 MOTIF ATACHCCA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST ATACHCCA TGGDGTAT 196 4 3.9e-061 1.2e-056 # ATACCCCA TGGGGTAT 171 2 1.1e-054 3.5e-050 # ATACACCA TGGTGTAT 56 1 1.1e-016 3.4e-012 # ATACTCCA TGGAGTAT 14 1 4.6e-004 1.4e+001 letter-probability matrix: alength= 4 w= 8 nsites= 243 E= 1.2e-056 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.230453 0.711934 0.000000 0.057613 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTCCCTY DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CTCCCTY RAGGGAG 231 40 1.1e-042 3.2e-038 # CTCCCTC GAGGGAG 189 25 1.4e-038 4.3e-034 # CTCCCTT AAGGGAG 52 15 1.8e-006 5.4e-002 letter-probability matrix: alength= 4 w= 7 nsites= 244 E= 3.2e-038 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.790984 0.000000 0.209016 MOTIF GKATAA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST GKATAA TTATMC 132 33 1.4e-017 4.3e-013 # GGATAA TTATCC 83 15 8.7e-014 2.7e-009 # GTATAA TTATAC 51 18 2.7e-005 8.3e-001 letter-probability matrix: alength= 4 w= 6 nsites= 144 E= 4.3e-013 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.638889 0.361111 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF DTGCCAA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST DTGCCAA TTGGCAH 112 31 1.3e-013 4.0e-009 # GTGCCAA TTGGCAC 51 8 2.0e-009 6.2e-005 # TTGCCAA TTGGCAA 44 12 6.7e-006 2.0e-001 # ATGCCAA TTGGCAT 34 11 3.3e-004 9.9e+000 letter-probability matrix: alength= 4 w= 7 nsites= 141 E= 4.0e-009 0.255319 0.000000 0.404255 0.340426 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AKCCGGG DREME-5 # Word RC Word Pos Neg P-value E-value # BEST AKCCGGG CCCGGMT 60 12 1.5e-009 4.4e-005 # AGCCGGG CCCGGCT 52 12 1.1e-007 3.4e-003 # ATCCGGG CCCGGAT 8 0 3.8e-003 1.1e+002 letter-probability matrix: alength= 4 w= 7 nsites= 64 E= 4.4e-005 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.843750 0.156250 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CTGAGR DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CTGAGR YCTCAG 179 97 1.1e-008 3.4e-004 # CTGAGG CCTCAG 131 69 9.9e-007 2.9e-002 # CTGAGA TCTCAG 59 34 4.6e-003 1.4e+002 letter-probability matrix: alength= 4 w= 6 nsites= 213 E= 3.4e-004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.286385 0.000000 0.713615 0.000000 MOTIF CTGGSA DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CTGGSA TSCCAG 193 109 1.4e-008 4.2e-004 # CTGGGA TCCCAG 102 51 6.5e-006 1.9e-001 # CTGGCA TGCCAG 104 62 2.9e-004 8.5e+000 letter-probability matrix: alength= 4 w= 6 nsites= 243 E= 4.2e-004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.539095 0.460905 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CARTGA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CARTGA TCAYTG 108 47 8.8e-008 2.6e-003 # CAATGA TCATTG 52 20 6.6e-005 1.9e+000 # CAGTGA TCACTG 58 27 3.3e-004 9.5e+000 letter-probability matrix: alength= 4 w= 6 nsites= 114 E= 2.6e-003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.482456 0.000000 0.517544 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TARAACA DREME-9 # Word RC Word Pos Neg P-value E-value # BEST TARAACA TGTTYTA 39 6 1.7e-007 4.9e-003 # TAGAACA TGTTCTA 20 1 9.1e-006 2.6e-001 # TAAAACA TGTTTTA 19 5 3.0e-003 8.8e+001 letter-probability matrix: alength= 4 w= 7 nsites= 40 E= 4.9e-003 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.475000 0.000000 0.525000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCARCTC DREME-10 # Word RC Word Pos Neg P-value E-value # BEST CCARCTC GAGYTGG 64 22 1.5e-006 4.2e-002 # CCAGCTC GAGCTGG 38 13 2.4e-004 6.8e+000 # CCAACTC GAGTTGG 28 9 1.1e-003 3.1e+001 letter-probability matrix: alength= 4 w= 7 nsites= 66 E= 4.2e-002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.424242 0.000000 0.575758 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 45.05 seconds