# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF366.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF366.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF366.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF366.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 17:17:54 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF366.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 17:17:55 PDT 2018) # host: kadru # when: Thu May 10 17:56:56 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.247 C 0.252 G 0.245 T 0.256 MOTIF TCCWTCCW DREME-1 # Word RC Word Pos Neg P-value E-value # BEST TCCWTCCW WGGAWGGA 335 120 1.6e-038 4.0e-034 # TCCATCCA TGGATGGA 212 67 5.6e-024 1.4e-019 # TCCTTCCT AGGAAGGA 125 32 2.8e-016 6.8e-012 # TCCTTCCA TGGAAGGA 49 11 2.0e-007 5.0e-003 # TCCATCCT AGGATGGA 55 20 1.9e-005 4.6e-001 letter-probability matrix: alength= 4 w= 8 nsites= 1381 E= 4.0e-034 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.728458 0.000000 0.000000 0.271542 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.724837 0.000000 0.000000 0.275163 MOTIF TCTAYYCA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST TCTAYYCA TGRRTAGA 91 5 3.0e-023 7.1e-019 # TCTATCCA TGGATAGA 58 4 3.7e-014 8.8e-010 # TCTACCCA TGGGTAGA 18 0 3.4e-006 8.0e-002 # TCTATTCA TGAATAGA 20 1 9.1e-006 2.2e-001 # TCTACTCA TGAGTAGA 8 0 3.8e-003 9.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 120 E= 7.1e-019 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.225000 0.000000 0.775000 0.000000 0.758333 0.000000 0.241667 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GGACRGA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST GGACRGA TCYGTCC 74 14 5.1e-012 1.2e-007 # GGACAGA TCTGTCC 49 10 7.0e-008 1.7e-003 # GGACGGA TCCGTCC 32 4 7.0e-007 1.7e-002 letter-probability matrix: alength= 4 w= 7 nsites= 100 E= 1.2e-007 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TRGATGAA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST TRGATGAA TTCATCYA 78 18 4.4e-011 1.0e-006 # TGGATGAA TTCATCCA 66 17 9.7e-009 2.3e-004 # TAGATGAA TTCATCTA 16 1 1.3e-004 3.0e+000 letter-probability matrix: alength= 4 w= 8 nsites= 99 E= 1.0e-006 0.000000 0.000000 0.000000 1.000000 0.161616 0.000000 0.838384 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TGGGTGRA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST TGGGTGRA TYCACCCA 62 15 1.1e-008 2.7e-004 # TGGGTGGA TCCACCCA 50 12 3.2e-007 7.6e-003 # TGGGTGAA TTCACCCA 16 4 5.6e-003 1.3e+002 letter-probability matrix: alength= 4 w= 8 nsites= 81 E= 2.7e-004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.197531 0.000000 0.802469 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TGACTCA DREME-6 # Word RC Word Pos Neg P-value E-value # BEST TGACTCA TGAGTCA 23 0 9.6e-008 2.3e-003 # TGACTCA TGAGTCA 23 0 9.6e-008 2.3e-003 letter-probability matrix: alength= 4 w= 7 nsites= 25 E= 2.3e-003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCTCCCTC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CCTCCCTC GAGGGAGG 96 40 2.0e-007 4.6e-003 # CCTCCCTC GAGGGAGG 96 40 2.0e-007 4.6e-003 letter-probability matrix: alength= 4 w= 8 nsites= 127 E= 4.6e-003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF ATAAAY DREME-8 # Word RC Word Pos Neg P-value E-value # BEST ATAAAY RTTTAT 48 11 3.4e-007 8.0e-003 # ATAAAT ATTTAT 30 8 1.9e-004 4.5e+000 # ATAAAC GTTTAT 20 3 2.2e-004 5.0e+000 letter-probability matrix: alength= 4 w= 6 nsites= 54 E= 8.0e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.370370 0.000000 0.629630 MOTIF CATYTA DREME-9 # Word RC Word Pos Neg P-value E-value # BEST CATYTA TARATG 75 28 7.4e-007 1.7e-002 # CATCTA TAGATG 56 23 8.1e-005 1.9e+000 # CATTTA TAAATG 22 5 6.7e-004 1.5e+001 letter-probability matrix: alength= 4 w= 6 nsites= 90 E= 1.7e-002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.722222 0.000000 0.277778 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 39.87 seconds