# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF362.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF362.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF362.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF362.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:21:48 PST 2017) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF362.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:21:49 PST 2017) # host: kadru # when: Mon Dec 18 16:42:46 PST 2017 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.269 C 0.237 G 0.236 T 0.258 MOTIF DAAAAAAA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST DAAAAAAA TTTTTTTH 316 86 7.6e-047 2.5e-042 # AAAAAAAA TTTTTTTT 237 60 6.7e-034 2.2e-029 # GAAAAAAA TTTTTTTC 167 46 7.7e-021 2.5e-016 # TAAAAAAA TTTTTTTA 73 30 5.8e-006 1.9e-001 letter-probability matrix: alength= 4 w= 8 nsites= 439 E= 2.5e-042 0.535308 0.000000 0.341686 0.123007 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACTCCAKC DREME-2 # Word RC Word Pos Neg P-value E-value # BEST ACTCCAKC GMTGGAGT 60 0 1.8e-019 5.9e-015 # ACTCCAGC GCTGGAGT 54 0 1.6e-017 5.1e-013 # ACTCCATC GATGGAGT 8 0 3.8e-003 1.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 62 E= 5.9e-015 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.870968 0.129032 0.000000 1.000000 0.000000 0.000000 MOTIF GTGAGCY DREME-3 # Word RC Word Pos Neg P-value E-value # BEST GTGAGCY RGCTCAC 68 8 5.8e-014 1.9e-009 # GTGAGCC GGCTCAC 48 5 1.6e-010 5.1e-006 # GTGAGCT AGCTCAC 21 3 1.2e-004 3.9e+000 letter-probability matrix: alength= 4 w= 7 nsites= 70 E= 1.9e-009 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.700000 0.000000 0.300000 MOTIF CRCCAY DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CRCCAY RTGGYG 145 54 6.6e-013 2.1e-008 # CACCAC GTGGTG 49 14 3.3e-006 1.0e-001 # CGCCAC GTGGCG 53 17 5.4e-006 1.7e-001 # CACCAT ATGGTG 36 14 1.1e-003 3.4e+001 # CGCCAT ATGGCG 25 10 7.6e-003 2.4e+002 letter-probability matrix: alength= 4 w= 6 nsites= 163 E= 2.1e-008 0.000000 1.000000 0.000000 0.000000 0.527607 0.000000 0.472393 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.619632 0.000000 0.380368 MOTIF CTGGGH DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CTGGGH DCCCAG 176 81 1.2e-011 3.9e-007 # CTGGGA TCCCAG 72 29 4.8e-006 1.5e-001 # CTGGGC GCCCAG 73 33 3.1e-005 9.6e-001 # CTGGGT ACCCAG 50 24 1.2e-003 3.9e+001 letter-probability matrix: alength= 4 w= 6 nsites= 213 E= 3.9e-007 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.366197 0.384977 0.000000 0.248826 MOTIF CYGYCTC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CYGYCTC GAGRCRG 111 35 6.8e-012 2.1e-007 # CCGCCTC GAGGCGG 32 7 2.7e-005 8.4e-001 # CTGTCTC GAGACAG 33 10 2.4e-004 7.5e+000 # CTGCCTC GAGGCAG 38 14 4.7e-004 1.4e+001 # CCGTCTC GAGACGG 20 5 1.9e-003 5.8e+001 letter-probability matrix: alength= 4 w= 7 nsites= 128 E= 2.1e-007 0.000000 1.000000 0.000000 0.000000 0.000000 0.414062 0.000000 0.585938 0.000000 0.000000 1.000000 0.000000 0.000000 0.578125 0.000000 0.421875 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AAGYGAT DREME-7 # Word RC Word Pos Neg P-value E-value # BEST AAGYGAT ATCRCTT 44 4 3.8e-010 1.2e-005 # AAGCGAT ATCGCTT 23 2 8.1e-006 2.5e-001 # AAGTGAT ATCACTT 21 2 2.9e-005 8.7e-001 letter-probability matrix: alength= 4 w= 7 nsites= 44 E= 1.2e-005 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.522727 0.000000 0.477273 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF RTGACTCA DREME-8 # Word RC Word Pos Neg P-value E-value # BEST RTGACTCA TGAGTCAY 27 0 5.5e-009 1.7e-004 # ATGACTCA TGAGTCAT 17 0 6.8e-006 2.1e-001 # GTGACTCA TGAGTCAC 10 0 9.4e-004 2.9e+001 letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 1.7e-004 0.629630 0.000000 0.370370 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CGAYCTC DREME-9 # Word RC Word Pos Neg P-value E-value # BEST CGAYCTC GAGRTCG 29 1 2.1e-008 6.4e-004 # CGATCTC GAGATCG 18 0 3.4e-006 1.0e-001 # CGACCTC GAGGTCG 11 1 3.1e-003 9.3e+001 letter-probability matrix: alength= 4 w= 7 nsites= 29 E= 6.4e-004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.379310 0.000000 0.620690 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CTACTCRG DREME-10 # Word RC Word Pos Neg P-value E-value # BEST CTACTCRG CYGAGTAG 21 0 4.0e-007 1.2e-002 # CTACTCAG CTGAGTAG 12 0 2.3e-004 7.0e+000 # CTACTCGG CCGAGTAG 9 0 1.9e-003 5.8e+001 letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 1.2e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.571429 0.000000 0.428571 0.000000 0.000000 0.000000 1.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 98.37 seconds