# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF341.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF341.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF341.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF341.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-centered (Mon Dec 18 16:20:44 PST 2017)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF341.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/seqs-shuffled (Mon Dec 18 16:20:44 PST 2017)
#        host: kali
#        when: Mon Dec 18 16:39:32 PST 2017

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.182 C 0.317 G 0.322 T 0.179


MOTIF AASAGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      AASAGC     GCTSTT        292         76   1.5e-043   4.4e-039
#           AACAGC     GCTGTT        176         24   4.5e-035   1.3e-030
#           AAGAGC     GCTCTT        135         53   3.5e-011   1.0e-006

letter-probability matrix: alength= 4 w= 6 nsites= 351 E= 4.4e-039
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.589744 0.410256 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCTCCCB DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     CCTCCCB    VGGGAGG        319        143   5.3e-026   1.5e-021
#          CCTCCCT    AGGGAGG        150         52   1.3e-014   3.8e-010
#          CCTCCCC    GGGGAGG        151         71   1.6e-009   4.4e-005
#          CCTCCCG    CGGGAGG         74         43   1.7e-003   4.8e+001

letter-probability matrix: alength= 4 w= 7 nsites= 419 E= 1.5e-021
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.412888 0.178998 0.408115


MOTIF GCVGTTCC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCVGTTCC   GGAACBGC         35          2   3.2e-009   9.0e-005
#         GCGGTTCC   GGAACCGC         11          0   4.7e-004   1.3e+001
#         GCAGTTCC   GGAACTGC         10          0   9.4e-004   2.6e+001
#         GCCGTTCC   GGAACGGC         14          2   2.0e-003   5.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 9.0e-005
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.285714 0.400000 0.314286 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GCTGTSCC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCTGTSCC   GGSACAGC         40          6   9.5e-008   2.6e-003
#         GCTGTCCC   GGGACAGC         21          3   1.2e-004   3.4e+000
#         GCTGTGCC   GGCACAGC         19          3   3.9e-004   1.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 2.6e-003
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.512195 0.487805 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CTSCCGCC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTSCCGCC   GGCGGSAG         35          5   4.7e-007   1.3e-002
#         CTGCCGCC   GGCGGCAG         21          4   4.0e-004   1.1e+001
#         CTCCCGCC   GGCGGGAG         14          1   4.6e-004   1.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 1.3e-002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.378378 0.621622 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 48.77 seconds