# DREME 4.12.0 # command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF34.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF34.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF34.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled # positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF34.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 17:13:55 PDT 2018) # negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF34.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 17:13:56 PDT 2018) # host: kadru # when: Thu May 10 17:45:39 PDT 2018 MEME version 4.12.0 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.403 C 0.106 G 0.108 T 0.382 MOTIF TAAATAAA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST TAAATAAA TTTATTTA 598 139 9.6e-202 2.0e-197 # TAAATAAA TTTATTTA 598 139 9.6e-202 2.0e-197 letter-probability matrix: alength= 4 w= 8 nsites= 3105 E= 2.0e-197 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GAGWS DREME-2 # Word RC Word Pos Neg P-value E-value # BEST GAGWS SWCTC 465 58 5.8e-137 1.2e-132 # GAGAC GTCTC 359 16 1.1e-117 2.2e-113 # GAGTC GACTC 252 14 3.6e-071 7.1e-067 # GAGTG CACTC 135 11 9.4e-032 1.9e-027 # GAGAG CTCTC 57 18 1.9e-006 3.7e-002 letter-probability matrix: alength= 4 w= 5 nsites= 786 E= 1.2e-132 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.566158 0.000000 0.000000 0.433842 0.000000 0.762087 0.237913 0.000000 MOTIF CASWG DREME-3 # Word RC Word Pos Neg P-value E-value # BEST CASWG CWSTG 236 48 1.1e-039 1.9e-035 # CAGAG CTCTG 156 26 1.1e-027 2.0e-023 # CACAG CTGTG 53 11 2.3e-008 4.2e-004 # CACTG CAGTG 48 11 3.4e-007 6.2e-003 letter-probability matrix: alength= 4 w= 5 nsites= 251 E= 1.9e-035 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.286853 0.713147 0.000000 0.828685 0.000000 0.000000 0.171315 0.000000 0.000000 1.000000 0.000000 MOTIF CATCTCAA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CATCTCAA TTGAGATG 107 1 2.0e-033 3.5e-029 # CATCTCAA TTGAGATG 107 1 2.0e-033 3.5e-029 letter-probability matrix: alength= 4 w= 8 nsites= 107 E= 3.5e-029 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF GRGCRA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST GRGCRA TYGCYC 110 16 1.6e-020 2.8e-016 # GGGCGA TCGCCC 23 0 9.6e-008 1.6e-003 # GAGCGA TCGCTC 19 0 1.7e-006 2.8e-002 # GAGCAA TTGCTC 37 8 5.4e-006 9.1e-002 # GGGCAA TTGCCC 36 8 9.1e-006 1.5e-001 letter-probability matrix: alength= 4 w= 6 nsites= 118 E= 2.8e-016 0.000000 0.000000 1.000000 0.000000 0.491525 0.000000 0.508475 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.635593 0.000000 0.364407 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CTGBC DREME-6 # Word RC Word Pos Neg P-value E-value # BEST CTGBC GVCAG 121 44 4.8e-011 7.9e-007 # CTGCC GGCAG 41 12 2.8e-005 4.7e-001 # CTGTC GACAG 44 16 1.4e-004 2.3e+000 # CTGGC GCCAG 46 21 1.2e-003 1.9e+001 letter-probability matrix: alength= 4 w= 5 nsites= 127 E= 7.9e-007 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.291339 0.354331 0.354331 0.000000 1.000000 0.000000 0.000000 MOTIF CWCC DREME-7 # Word RC Word Pos Neg P-value E-value # BEST CWCC GGWG 205 120 2.1e-008 3.3e-004 # CACC GGTG 130 63 8.5e-008 1.3e-003 # CTCC GGAG 98 61 1.1e-003 1.6e+001 letter-probability matrix: alength= 4 w= 4 nsites= 257 E= 3.3e-004 0.000000 1.000000 0.000000 0.000000 0.583658 0.000000 0.000000 0.416342 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF CAAGWC DREME-8 # Word RC Word Pos Neg P-value E-value # BEST CAAGWC GWCTTG 29 3 9.7e-007 1.4e-002 # CAAGAC GTCTTG 22 3 6.8e-005 9.5e-001 # CAAGTC GACTTG 8 0 3.8e-003 5.4e+001 letter-probability matrix: alength= 4 w= 6 nsites= 30 E= 1.4e-002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.766667 0.000000 0.000000 0.233333 0.000000 1.000000 0.000000 0.000000 # Stopping reason: E-value threshold exceeded # Running time: 29.83 seconds