Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
M0085_1.02 10 TCGCCTGAGG
M0104_1.02 11 ATATTAATTAA
M0105_1.02 9 TTTTAATTG
M0108_1.02 11 GATAATATTGA
M0177_1.02 10 GCCATATGTT
M0178_1.02 10 GACAGCTGTC
M0189_1.02 8 GCACGTGA
M0195_1.02 10 ACCATATGGT
M0196_1.02 10 GGCACGTGTC
M0198_1.02 10 AGCCCGTGCG
M0199_1.02 13 TAACGACACGTGC
M0211_1.02 8 GCACGTGT
M0212_1.02 10 GGCACGTGCC
M0214_1.02 9 AACATATGG
M0216_1.02 10 CGCAGCTGTG
M0217_1.02 10 ACCATATGGT
M0300_1.02 10 AATGACGTCA
M0305_1.02 9 GCCACGTGT
M0307_1.02 8 ATACGTTG
M0395_1.02 8 GTACTAAT
M0396_1.02 10 AACGGTAGCA
M0398_1.02 11 AGGAAGTGCAA
M0404_1.02 10 AAGGGGGGCA
M0405_1.02 10 TGGGCGTGGC
M0408_1.02 10 ATGTGCACAT
M0413_1.02 10 GGTGCGGGAC
M0415_1.02 8 ATAACGGT
M0422_1.02 10 CCGGGGGGTC
M0424_1.02 10 TTTGACAGCT
M0428_1.02 8 AGGAGCAC
M0431_1.02 9 ACGGTAGCA
M0432_1.02 9 CGCGCGCAC
M0433_1.02 10 ATCTAGAACA
M0436_1.02 10 TTGTTTATTG
M0437_1.02 9 TATATATAT
M0442_1.02 9 CATGCAGTG
M0443_1.02 10 TGGGCGTGGC
M0594_1.02 9 ATTTGAATT
M0603_1.02 7 TTAGCGG
M0607_1.02 9 GCGTAAATA
M0608_1.02 10 GGGGGCGTAA
M0609_1.02 10 CCCCGCGGCC
M0610_1.02 9 ATCGCGTTA
M0629_1.02 11 AATGTATCAAT
M0630_1.02 10 AATGTATCAA
M0632_1.02 10 AATGTATCAA
M0633_1.02 10 TAATGTATTA
M0635_1.02 13 AACATGTATAAAA
M0714_1.02 10 AACCGGAAGT
M0718_1.02 10 ATGTAAACAA
M0719_1.02 8 GTAAACAA
M0728_1.02 12 AGTAAACAAACA
M0736_1.02 8 GTAAACAA
M0737_1.02 10 TATGTAAACA
M0747_1.02 10 AATGTAAACA
M0756_1.02 9 GTAAACAAA
M0887_1.02 9 CCTAATGAG
M0890_1.02 8 GTAATCAA
M0891_1.02 10 TTAATTGGTT
M0892_1.02 10 CCTAATTACC
M0893_1.02 10 GTTAATTAAC
M0894_1.02 8 TTAATTAG
M0896_1.02 8 TTAATTAG
M0897_1.02 10 TTTTATGGGC
M0898_1.02 8 TTACGTAA
M0900_1.02 8 TTAATTGG
M0901_1.02 8 CTTGTCAA
M0905_1.02 9 TTAATGACC
M0906_1.02 10 AATTAATTAG
M0931_1.02 9 TAATTAATT
M0937_1.02 7 TGATACC
M0942_1.02 8 TTGTAATG
M0943_1.02 8 GCTAATTA
M0949_1.02 7 TTAATGA
M0952_1.02 8 TGATACCC
M0958_1.02 7 CTAATTA
M0961_1.02 9 CTAATTGGT
M0969_1.02 9 CCAATCAGC
M0975_1.02 9 TAATTAATT
M0994_1.02 9 ATGATACCC
M0996_1.02 7 GAAATCA
M0999_1.02 9 ATTAATTAC
M1007_1.02 9 TTTATGACC
M1012_1.02 9 TTAATGACC
M1016_1.02 7 GTGATAC
M1018_1.02 7 TAATTAA
M1025_1.02 8 GCCAATTA
M1027_1.02 9 TTAATTACC
M1030_1.02 9 GCCACTTAA
M1034_1.02 7 GCAATTA
M1039_1.02 9 GCTAATTGG
M1049_1.02 10 ATGATACCCC
M1070_1.02 9 TTAATGACC
M1071_1.02 8 TTAATGAC
M1073_1.02 9 TTAATGACC
M1110_1.02 10 GGGCAATAGA
M1125_1.02 10 GCTAATTGGC
M1157_1.02 10 TTTTATGACC
M1163_1.02 9 ATTAATTAC
M1266_1.02 10 GACCGAAACC
M1281_1.02 9 CTTACGCAA
M1358_1.02 9 TAACCCTAG
M1359_1.02 10 GTTTGCGCCA
M1418_1.02 8 TGGTACCA
M1432_1.02 10 ATTGACCTCT
M1458_1.02 10 ACTGACCTCG
M1507_1.02 10 AATTTTGGCT
M1528_1.02 10 CCATGGCAAC
M1529_1.02 10 CCATAGCAAC
M1545_1.02 9 CGTACGTCA
M1581_1.02 10 TTTGCTGACT
M1582_1.02 11 ATATATAATAA
M1583_1.02 8 TTCATTGA
M1589_1.02 10 GCAGAACAAT
M1592_1.02 8 AAAACAAT
M1594_1.02 10 CATTGTTCTT
M1601_1.02 9 ATTGTTCTC
M1605_1.02 10 ATTCATCTTC
M1628_1.02 11 AGGTGTGAAGA
M1668_1.02 12 TCCAAACGAGAT
M1838_1.02 15 CATTGCCTCAGGGCA
M1841_1.02 15 GAACACTCTGTTCTT
M1863_1.02 8 GTAAACAT
M1868_1.02 14 ACAGATAAGAATCT
M1871_1.02 10 TGGGTGGGGC
M1882_1.02 21 AAAGTGAAAGTGAAAGTAAAA
M1884_1.02 15 AGCTAAAAATAGCAT
M1889_1.02 10 AAGCACATGG
M1890_1.02 18 AGAGTGCTGATTGGTCCA
M1906_1.02 11 GGGGGCGGGGC
M1915_1.02 20 GCAAGGCATGATGGGAAATC
M1917_1.02 11 GGTCACGTGGC
M1919_1.02 12 CAAGATGGCGGC
M1925_1.02 11 TATTGTGCAAT
M1926_1.02 9 CAGGTGAGG
M1927_1.02 8 GCCACGTG
M1928_1.02 11 GGGAATTTCCC
M1929_1.02 15 CATGTCTGGGCATGT
M1934_1.02 20 AGGTCAGGGTGACCTGGGCC
M1950_1.02 6 GTGGAT
M1955_1.02 11 TTTCCAGGAAA
M1963_1.02 14 GGGGCCGAGGCCTG
M1968_1.02 11 TCCCTGGGGAC
M1970_1.02 6 TGCCAA
M2065_1.02 15 AGGTCAGGGTGACCT
M2264_1.02 8 GCCATCTG
M2267_1.02 11 TTTTATGGCTT
M2268_1.02 11 TATTGCACAAT
M2270_1.02 11 TAATCTAATCA
M2273_1.02 11 GGGCGGGAAGG
M2275_1.02 13 GAACCAGGAAGTG
M2277_1.02 11 ACAGGAAGTGG
M2278_1.02 11 TGTGACTCATT
M2281_1.02 11 TCCAATCCACA
M2283_1.02 15 CAAAAGTAAACAAAG
M2286_1.02 15 TGGACTTTGGACTCT
M2287_1.02 13 GGCCATAAATCAC
M2289_1.02 13 AAGATGATGTCAT
M2292_1.02 11 GGTGACTCATC
M2296_1.02 15 CTGAGTCAGCAATTT
M2299_1.02 13 AGGGACAGCTGCA
M2301_1.02 15 AAATGGACCAATCAG
M2303_1.02 15 TGACCTCTGACCCCG
M2305_1.02 11 TGCGCAGGCGC
M2306_1.02 13 TTCATTTGCATAT
M2307_1.02 15 AGAAAGTGAAAGTGA
M2310_1.02 15 CAAACCACAAACCCC
M2313_1.02 10 CCATTGTTTT
M2314_1.02 15 GGGAGGGGGCGGGGC
M2319_1.02 14 TTCCTTTGATCTTT
M2321_1.02 20 AGACATGCCCAGACATGCCC
M2323_1.02 15 CAGATCTCGCGAGAG
M2385_1.02 11 AAGTAAACAGA
M2387_1.02 10 GTGGGGTGAT
M2388_1.02 10 ATGGGGTGAT
M2390_1.02 8 CAGGAAGG
M2391_1.02 10 GGGGCGGGGC
M2392_1.02 19 GTTGCCATGGCAACCGCGG
M4344_1.02 8 GGTTGCCA
M4427_1.02 21 GTGGCCACCAGGGGGCGCTGT
M4428_1.02 14 GGAACATTCTGTTC
M4438_1.02 15 AGGTCACGGTGACCT
M4444_1.02 14 AGGGGATTTCCCAG
M4451_1.02 11 GGTCACGTGAC
M4452_1.02 15 TCTCGATATGACTCA
M4453_1.02 15 AAGAGGAAGTGAAAC
M4454_1.02 15 AAATCTCGCGAGAAC
M4459_1.02 20 GTGCGGGGGCGGGGGGGGGG
M4461_1.02 21 GCCTTCTGGGAATTGTAGTTC
M4462_1.02 11 CGCCGGAAGTG
M4463_1.02 18 AATGTGGAAATGAGTCAG
M4467_1.02 15 GTGCCAAAAATAGCA
M4469_1.02 14 TCCATGGTGCTGAA
M4471_1.02 15 GCAGCCAAGCGTGAC
M4473_1.02 15 GCCGGCCAATCAGAG
M4476_1.02 15 TCACCTGTTGCTAGG
M4477_1.02 19 CCATGGCCATATAAGGCAA
M4478_1.02 20 CAGGTGATTTCCGGGAAATG
M4479_1.02 11 GCAGCAGCTGT
M4481_1.02 15 GGTCACGTGGCCCGG
M4484_1.02 15 CTGGGAATTGTAGTC
M4509_1.02 17 ATTTGCATAACAAAGGA
M4511_1.02 8 TGACCTCT
M4522_1.02 10 CCGGAAGTGG
M4525_1.02 15 AGCCTCAGGGCATGG
M4526_1.02 15 GGGGGGTGACTCAGC
M4527_1.02 21 GGACTACAACTCCCAGCAGGC
M4532_1.02 10 CCACGTGCTC
M4536_1.02 15 GGGGAGGGCGCGCGG
M4537_1.02 15 GGCGGGAAATTTGAA
M4543_1.02 11 GGAACCACGTG
M4545_1.02 15 AGAAAGTGAAAGTGA
M4551_1.02 17 TTCATACTGGAGAGAAA
M4553_1.02 10 GGTCACGTGC
M4565_1.02 14 CAGGATGAGTCACC
M4567_1.02 15 GCAAAGTAAACAGAG
M4569_1.02 18 GTCCCGGGTTCGAATCCC
M4572_1.02 15 TGCTGACTCAGCAAA
M4600_1.02 11 GCAGATAAGGA
M4604_1.02 21 GGGGAGGAGGGAGGGGAGGAG
M4612_1.02 15 CCGCCAGGGGGCGCC
M4619_1.02 11 GGGTGACTCAT
M4623_1.02 15 CGGTGACTCATCCTT
M4629_1.02 17 CATGACTCAGCAATTTT
M4635_1.02 15 GAAAATGAAACTGAA
M4636_1.02 21 CTGCCCTCATCCAAGATGGCG
M4640_1.02 15 GGGCGGGGGTCTCGG
M4665_1.02 15 CAGATAAGAATCTGT
M4680_1.02 8 GTCACGTG
M4681_1.02 10 TGCTGAGTCA
M4692_1.02 10 ACTACAACTC
M4698_1.02 15 CTGGACTTTGGCCTC
M4702_1.02 8 TGACCTTT
M4708_1.02 10 TATGCAAATA
M4840_1.02 11 AAATGCGCAAC
M4850_1.02 21 TGTTGTGTCCGTGCCATCTGG
M4930_1.02 11 AAATCGTGACT
M4971_1.02 10 GTAACAGCTG
M5116_1.02 9 ACCACCTGT
M5209_1.02 11 GTGGGCGTGGC
M5234_1.02 10 GGTCACGTAC
M5284_1.02 10 GCTAATTAGC
M5287_1.02 13 CTAATTAAATTAA
M5291_1.02 13 TTAATTTAATTAA
M5292_1.02 13 GGATGATGCAATA
M5293_1.02 14 CGATGACGTCATCG
M5294_1.02 10 GTTAAACGGT
M5300_1.02 17 TAATCGGTATTTAATTG
M5302_1.02 14 TGATGACGTCATCA
M5303_1.02 17 TGCTTTCTAGGAATTCA
M5304_1.02 10 ACCATATGGT
M5307_1.02 12 AAACATATGTTT
M5308_1.02 10 ACCATATGTT
M5310_1.02 8 TTAATTGG
M5320_1.02 15 CCCGCATACAACGAA
M5321_1.02 10 AACACGTGTT
M5322_1.02 8 TTTTTATT
M5323_1.02 14 TGATGACGTCACCG
M5325_1.02 14 TGATGACGTGGCAT
M5335_1.02 18 ATCGATAATTTTATCGAT
M5339_1.02 10 GATAATTAGG
M5342_1.02 8 GTAATTGG
M5343_1.02 8 ATAATTAC
M5344_1.02 8 GTAATTGG
M5345_1.02 10 GTTAATCCGC
M5346_1.02 10 GCTAATCCGT
M5348_1.02 13 CTAATCTAATTAA
M5349_1.02 13 CTAATTTAATCAA
M5363_1.02 12 TTTCCCGCCAAA
M5377_1.02 12 AACCCGGAAGTG
M5388_1.02 10 GCTAATTAGC
M5390_1.02 10 GCTAATTGGG
M5394_1.02 10 GTTAATTGGA
M5398_1.02 10 ACCGGAAGTG
M5414_1.02 10 GTTAATTGGG
M5420_1.02 10 ACCGGAAGTA
M5421_1.02 11 AACCGGAAATA
M5422_1.02 10 ACCGGAAGTG
M5425_1.02 15 CCGGAAGCGGAAGTG
M5427_1.02 10 GCTAATTACC
M5428_1.02 10 GCTAATTACC
M5430_1.02 10 ACCACCTGTT
M5435_1.02 14 TCGCTGTGTCATTC
M5445_1.02 14 AGTAAATATTTTTT
M5446_1.02 7 GTAAACA
M5460_1.02 7 GTAAACA
M5471_1.02 14 GTAAACATGTTTAC
M5480_1.02 10 GCTAATTGGT
M5481_1.02 10 GCTAATTGGT
M5487_1.02 10 TATGCGGGTA
M5490_1.02 16 GCTTCGTGGGGGGTCT
M5491_1.02 14 CTTCGCGGGGGGTC
M5493_1.02 8 GTACGTAA
M5497_1.02 17 AACCGGTTTAACCGGTT
M5500_1.02 10 GCTAATCCCC
M5501_1.02 10 CCTAATCCGC
M5502_1.02 10 TTTAATTAGG
M5503_1.02 10 TTTAATTAGT
M5504_1.02 12 TGGCACGTGCCG
M5506_1.02 12 TGGCACGTGCCA
M5509_1.02 10 GGCACGTGTC
M5512_1.02 9 GGTGGGCAT
M5517_1.02 10 ACTAGTTAAC
M5518_1.02 11 TTTTAATTGCT
M5519_1.02 11 TTTTAATTGGT
M5520_1.02 11 TGTTAATTGCT
M5530_1.02 12 TATAATCGTTTT
M5541_1.02 10 GTTAATTACT
M5542_1.02 10 GCTAATTAGT
M5543_1.02 10 CTTAATTAGT
M5544_1.02 10 TTTTTATGGG
M5547_1.02 11 GGTCGTAAAAT
M5551_1.02 9 TTTTATTAC
M5553_1.02 10 CCAATAAAAA
M5555_1.02 10 GTCGTAAAAA
M5557_1.02 9 GTAATAAAA
M5563_1.02 10 GCTAATTAGC
M5567_1.02 13 GAACGTTCTAGAA
M5568_1.02 15 TTCGAAACGTTCGAA
M5571_1.02 10 GACAGGTGTA
M5581_1.02 12 CATGTCATGTAC
M5582_1.02 12 CATGTCATGTAA
M5583_1.02 8 TTAAGTGC
M5584_1.02 13 TTAATCTAATTAA
M5587_1.02 9 ATGACTCAT
M5591_1.02 18 CAAAAAGGGGCGTGGCAT
M5592_1.02 14 AAGGGGGCGTGGCC
M5593_1.02 11 GGGGGCGTGGC
M5594_1.02 13 CTCGACCTAATTA
M5602_1.02 8 TTAATTGG
M5604_1.02 8 TTAATTAA
M5605_1.02 8 TTAATTAA
M5616_1.02 12 GCTATAAATAGC
M5621_1.02 8 CCTGTCAA
M5623_1.02 10 GCTAATTAAC
M5624_1.02 10 AGTAATTAAC
M5627_1.02 10 CGCAGGTGTT
M5628_1.02 8 AGGTGTGA
M5631_1.02 10 GTTAATTAGA
M5632_1.02 10 ATCACGTGAT
M5634_1.02 10 ACCACGTGCC
M5635_1.02 10 TTTAATTACC
M5636_1.02 10 AACAGCTGTT
M5637_1.02 18 TAATTGGTTTTTAATTGC
M5643_1.02 12 ACCGTTAAACGG
M5652_1.02 10 GCCATATGGT
M5653_1.02 10 GACATATGTT
M5660_1.02 15 TTGGCACGGTGCCAA
M5662_1.02 15 TTGGCACCGTGCCAG
M5664_1.02 15 TTGGCACCGTGCCAA
M5672_1.02 10 GCTAATTAGC
M5689_1.02 11 AATTTGCTGAC
M5690_1.02 10 AACATATGTT
M5691_1.02 10 ACCATATGTT
M5693_1.02 10 ACCATATGTT
M5697_1.02 14 ATTATTGATTTTTT
M5702_1.02 17 TGCAGTCATGCGTGACG
M5704_1.02 10 TAATCGATTA
M5705_1.02 8 CTAATTAG
M5709_1.02 10 TAATCGATTA
M5711_1.02 17 TGCAGTCATGCGTGACG
M5714_1.02 11 TAATTTAATTA
M5715_1.02 11 TAATTTAATTA
M5717_1.02 9 CTTAATCCC
M5720_1.02 9 CTTAATCCC
M5722_1.02 12 TGACACCTGTCA
M5729_1.02 9 ATTTGCATA
M5735_1.02 13 AAATTAGCATAAT
M5738_1.02 9 ATTTGCATA
M5740_1.02 14 ATGAATAATTAATG
M5743_1.02 16 ATGCATAATTAATGAG
M5744_1.02 9 ATTTGCATA
M5746_1.02 10 ATAATGAGCT
M5750_1.02 13 GGGGGCCTTGAAA
M5753_1.02 12 CAAGACGCCTTA
M5771_1.02 10 GTTAATTGGC
M5772_1.02 8 TTAATTGG
M5777_1.02 16 CGTTGCCATGGCAACG
M5782_1.02 9 GGATAATCC
M5804_1.02 15 GAGCAACAGGTGGTT
M5805_1.02 13 ATGCAACAGGTGG
M5807_1.02 8 CTAATTGG
M5815_1.02 12 ACAATAACATTG
M5825_1.02 15 AACACTACCATTGTT
M5835_1.02 16 AACAATGTTCATTGTT
M5838_1.02 16 AACAATGTGCAGTGTT
M5856_1.02 12 AGTGGGCGTGGC
M5857_1.02 11 ACCCGGATGTA
M5865_1.02 14 AAAAAGAGGAAGTA
M5873_1.02 10 AGGTGTGAAA
M5875_1.02 20 AGGTGTGAAAAAAGGTGTGA
M5880_1.02 19 AGGTGTGAAATTCACACCT
M5882_1.02 20 TTTCACACCTAGGTGTGAAA
M5883_1.02 16 TCACACCTTCACACCT
M5889_1.02 16 GGTGTGAATTCACACC
M5896_1.02 8 AGGTGTGA
M5903_1.02 12 AAAGATCAAAGG
M5932_1.02 10 GTCACGTGAT
M5934_1.02 12 TGACAGCTGTCA
M5935_1.02 12 TGACAGCTGTCA
M5941_1.02 13 CTAATTTAATTAG
M5944_1.02 8 CTAATTAC
M5945_1.02 8 CTAATTAC
M5949_1.02 8 CTAATTAG
M5955_1.02 11 TAATGGCGGAC
M5958_1.02 13 TATGTCGCGATAG
M5959_1.02 17 TTTCGCCTGGCACGTCA
M5962_1.02 12 TTCGGTGGTCGC
M5965_1.02 15 GCACAGCGGGGGGTC
M5967_1.02 19 ATGTTAAATGTAGATTAAG
M5970_1.02 17 GTCGTGTTGTGGGAAAG
M5971_1.02 14 TCGAGGCTAGCCCA
M5972_1.02 17 GAGTATTATGGGATGGA
M5973_1.02 18 AGGTGTTCTGTTAACACT
M5974_1.02 12 GGGTTCGAGGGT
M5976_1.02 17 TTCGTGGCATTTTTCTA
M5977_1.02 10 GTGGGGGGGG
M5979_1.02 12 TGTGGGAAAAGC
M5980_1.02 10 AGGTAGGTAC
M5981_1.02 15 TTTTCAGTGTGTGCA
M5998_1.02 12 GGTGACGTCATT
M6037_1.02 12 TTTGTCATGTAG
M6111_1.02 13 AGAAAGGGTTAAT
M6114_1.02 10 AAAGCAAACA
M6115_1.02 15 CATGTCTGGGCATGT
M6119_1.02 15 AAAAAGAGGAAGTGG
M6123_1.02 15 GGGGTGGGGGAGGGG
M6131_1.02 21 CCGGTTCAAACCGGTTCTGGC
M6139_1.02 9 GCACGCAAC
M6140_1.02 18 ATTGGTTTTATTGGTTAA
M6141_1.02 12 TAATCCAATTAT
M6144_1.02 10 GCCCCCGGGC
M6146_1.02 14 ACGCGCCTCGGGCG
M6147_1.02 22 TTTAATTTGATTTCGATTAATT
M6149_1.02 13 GGTTGGTATTGTG
M6150_1.02 12 GCCTCCCACGCC
M6151_1.02 8 TCACGTGC
M6152_1.02 10 GTGACGTCAC
M6154_1.02 12 TAAGGAAGAAGG
M6155_1.02 12 GTGGTGACGTGG
M6157_1.02 10 TCATTAATTG
M6159_1.02 16 TTCCTAGAAAGCTTTT
M6161_1.02 20 ACCGGGCCACGTGCAGAGGG
M6162_1.02 14 GGGTCACGTGTCCA
M6163_1.02 12 TTTGTTGTGTTC
M6164_1.02 25 ACATAGTGACACCTAGGTGTGAAAT
M6166_1.02 15 ATTATGTTAAATCCC
M6167_1.02 8 ACATAAAT
M6171_1.02 11 AATTGTGCAAT
M6172_1.02 12 AAGATTGCGCAA
M6173_1.02 13 CAGATTGCAAAAT
M6174_1.02 11 AGCCAATCAGC
M6176_1.02 12 TGACCTTTGACC
M6180_1.02 9 GTGACGTCA
M6181_1.02 11 CACTGACGTCA
M6182_1.02 8 CTAATCCC
M6184_1.02 14 AGGGGGATCGATGG
M6185_1.02 7 CGTTGGC
M6186_1.02 11 TGTTACATAAC
M6187_1.02 13 GGGGATTGCATTC
M6188_1.02 8 ATAATTAT
M6189_1.02 10 GCTAATTACA
M6191_1.02 10 GGCGCGAAAC
M6192_1.02 10 CGCGCGAAAC
M6194_1.02 10 CGCGCCAAAC
M6196_1.02 13 TAGGGCGCGAAAC
M6197_1.02 9 CGTGACGTC
M6199_1.02 11 GGCGTGGGCGG
M6200_1.02 11 AGAGTGGGTGT
M6201_1.02 11 GGCGGCAGGGC
M6204_1.02 15 TAGCAGGAAGTGAGT
M6205_1.02 14 GGCAAACAGGAAAT
M6206_1.02 11 ATAAGGAAGTA
M6207_1.02 9 ACCGGAAGT
M6208_1.02 12 CCCAGGAAGTGC
M6210_1.02 13 TGCCCACGTGGTG
M6211_1.02 14 CGGGGATACGAAAT
M6212_1.02 13 CCCACGTACGCAC
M6213_1.02 11 ACCGGAAATCC
M6215_1.02 9 TGACCTTGA
M6216_1.02 9 TGACCTTGA
M6221_1.02 11 GCGGGAAGTGG
M6222_1.02 8 CAGGAAGT
M6223_1.02 13 GACAGGAAGTAAC
M6224_1.02 17 GCCACAGGAAGTAACAC
M6225_1.02 16 AAGATAAGATAAGATA
M6226_1.02 10 CAGGAAATAA
M6228_1.02 10 CTGACTCATC
M6234_1.02 13 GCAAAGCAAACAA
M6235_1.02 15 CTTAAGTAAACAACG
M6236_1.02 15 TCTGGCAAAACAAAC
M6237_1.02 9 AAACAAACA
M6238_1.02 11 AAAATAAACAT
M6239_1.02 11 AAAAGTAAACA
M6240_1.02 12 GGCCAATCAGAG
M6241_1.02 10 TAAATAAACA
M6242_1.02 13 TAAACAAAAACAA
M6244_1.02 13 AAAAACAAACAAC
M6245_1.02 16 AAAAAGTAAACAAACC
M6246_1.02 13 AGGTAAACAAACA
M6247_1.02 9 AATAAACAA
M6249_1.02 9 AAACAAATT
M6250_1.02 12 AAATAAACAATG
M6251_1.02 12 TTGTGTTTTTTT
M6256_1.02 9 ACAGATAAC
M6257_1.02 17 TAAGAGATAACTTAGAT
M6258_1.02 7 AAGATAA
M6259_1.02 14 CACATGCGGGTACT
M6262_1.02 11 TGCAGTGATTT
M6263_1.02 10 GCTGTGATTT
M6264_1.02 11 CTGGGTGGTCT
M6265_1.02 11 GTGGGTGGTCT
M6266_1.02 11 CTGGGTGGTCC
M6267_1.02 10 GTGGGGGGTC
M6268_1.02 12 AATGCCAGACGC
M6269_1.02 9 ACTCATTGA
M6270_1.02 20 AGGGACGCAGCTGCTCCCCA
M6271_1.02 13 GGGCTCGTGGCGG
M6272_1.02 16 AGGCCACGTGCCGGAT
M6273_1.02 17 GGGGGCACGTGGCATTA
M6274_1.02 9 GGGTTGCCC
M6275_1.02 12 GCGTACGTGCGG
M6276_1.02 16 GCGCTAGCGGACGTTA
M6277_1.02 13 CTGTTACGTAATC
M6278_1.02 12 TAGGGCTGCAAA
M6279_1.02 7 AAAATAC
M6280_1.02 15 AATAATCGCGAATAT
M6281_1.02 15 GGTTAATTATTAACC
M6282_1.02 14 GTTAATCATTAACC
M6285_1.02 14 TTTATTGATTTTTT
M6287_1.02 14 AGAATGTTCTAGAA
M6289_1.02 12 TCATAAATCATC
M6290_1.02 11 CCAATAAAACC
M6291_1.02 10 CATCCATCAA
M6292_1.02 10 CATTAATCAA
M6293_1.02 15 TCCAATCTATTGATT
M6295_1.02 10 CCATCCATCA
M6296_1.02 13 TGCATCAATCATT
M6297_1.02 10 CATTAATCAA
M6298_1.02 11 GCATTAATCAA
M6299_1.02 15 AAAGTAATAAATCAT
M6300_1.02 14 GGGCATCAATCAAA
M6301_1.02 10 AATTAAAGCA
M6302_1.02 11 TCCCTAATAAA
M6303_1.02 8 TTAATTGA
M6304_1.02 10 CCATTAAACT
M6306_1.02 12 TGTCAGGGGGCA
M6308_1.02 14 GGAAAGTGAAAGCA
M6309_1.02 17 GGAAAGCGAAACTGAAA
M6311_1.02 20 TAAAGGAAAGCCAAAAGTGA
M6312_1.02 10 GAAAGTGAAA
M6313_1.02 15 GAGAAAGTGAAACTG
M6314_1.02 12 GAAAGCGAAACT
M6315_1.02 7 GTTAATG
M6316_1.02 9 CCAGGTGCA
M6321_1.02 17 GGCGGGGAGGTGGGGGC
M6322_1.02 11 CAGGGTGTGGC
M6323_1.02 15 TGCCTGGGTGTGGCT
M6324_1.02 10 TGGGCGGGGC
M6325_1.02 8 GGGGGCGG
M6326_1.02 9 CAGGGGGTG
M6327_1.02 7 CTTTGAT
M6328_1.02 13 CACTTTTAATTAG
M6329_1.02 13 AAAATTAATTAAT
M6330_1.02 21 GTGCTGACCCCGCAGCCTTCG
M6331_1.02 9 TGCTGACGG
M6332_1.02 8 TTGCTGAC
M6333_1.02 7 CATGACT
M6336_1.02 17 GGGGGGGGGAGGGAGGG
M6337_1.02 11 GGGGCCGGAGG
M6338_1.02 17 TACAACAACCTGTTCTT
M6339_1.02 7 CTCCGGG
M6342_1.02 12 GCTAAAAATAGC
M6343_1.02 13 CGTAAAACTGTCA
M6344_1.02 13 TGACAGCTGTCAA
M6345_1.02 10 ATCACATGAC
M6346_1.02 19 CCACGGCGGTGTCACATGC
M6347_1.02 7 TAATTGT
M6348_1.02 17 AGTGCCGTGTGCAAAAC
M6349_1.02 10 TCAACCTGCA
M6350_1.02 7 CAGTTGG
M6352_1.02 8 CCACGTGG
M6353_1.02 7 GCAGCTG
M6354_1.02 9 GACAGCTGC
M6355_1.02 13 TGACAGCTGCTGC
M6356_1.02 9 GGTGGGGAA
M6357_1.02 8 TTTAATGG
M6358_1.02 12 CGGCAGATGGCC
M6359_1.02 7 AATGACT
M6360_1.02 12 CATGACTCAGCA
M6361_1.02 13 ATGGAAATTTCCA
M6363_1.02 9 AATTTTCCA
M6364_1.02 9 AGTTTTCCA
M6365_1.02 10 AAATTTTCCT
M6366_1.02 15 CATGGAGTTTTCCAC
M6368_1.02 14 ATGCATTACATAAC
M6370_1.02 11 GGAATCTCCCT
M6373_1.02 14 CAGCCAATCAGCGC
M6374_1.02 10 CTCAAGTGCT
M6375_1.02 12 AAACCACTTAAA
M6376_1.02 7 TCAAGTG
M6377_1.02 9 TTCAAGGAC
M6378_1.02 13 AATAAGTATATAA
M6379_1.02 11 AGTTAAGTGGA
M6380_1.02 9 CTAATTGGT
M6381_1.02 10 TCTCCCACGC
M6382_1.02 14 TCTGACCTACTTTT
M6383_1.02 19 CGTTGACCTTTGACCTTTA
M6384_1.02 14 AGGTCATTGACCCT
M6385_1.02 19 CTGAACTTTCTTGACCTCA
M6387_1.02 18 CTGAACTTTCCTGACCCC
M6389_1.02 13 CTGACCTCTGGCC
M6391_1.02 14 TGACTTTTGACTTT
M6392_1.02 18 TCAAGTGAACTTTGTCCT
M6393_1.02 9 GTGACCTTT
M6394_1.02 9 GTGACCTTT
M6395_1.02 10 CTGACCTTTG
M6396_1.02 10 TGGCCTTGAA
M6397_1.02 13 TGACCTTGAACTT
M6399_1.02 21 GTCTTGTTATTGATTTTTTTT
M6400_1.02 8 CTAATCCT
M6401_1.02 15 CTTTAATCCCTTAAC
M6402_1.02 9 TGTAACTGT
M6406_1.02 18 GTTCAGTCATGCGTGACA
M6410_1.02 11 TCAAGCGTGAA
M6411_1.02 14 GTCACTGAAGCGGG
M6412_1.02 15 CCCATCAATCAAATT
M6413_1.02 15 CCATCAATCAATTTA
M6415_1.02 9 CTAATTACC
M6416_1.02 11 TCTGTGGTTTG
M6417_1.02 13 ATATATTCATGAG
M6418_1.02 10 TTTAATCCCA
M6419_1.02 13 CATCAATCAAGCT
M6420_1.02 17 GGGGGCATCAGGAGGGG
M6422_1.02 10 CGGGGGGCCC
M6423_1.02 9 ATTTGCATA
M6425_1.02 14 TTTGCATTACAATG
M6426_1.02 10 CATAAATAAT
M6427_1.02 13 CAGCTCATTAATA
M6429_1.02 13 CATAATTTATGCA
M6430_1.02 7 TGACCTT
M6432_1.02 14 TGACCTTTGTCCTA
M6433_1.02 18 GTGACCTTTGACCTACTT
M6436_1.02 13 TACAGACTGTTCT
M6438_1.02 15 GAGTAATTAATATAG
M6439_1.02 7 TAATCTG
M6440_1.02 7 TTAATTG
M6441_1.02 21 GGACAGCTGTTCTGTTTCCTG
M6442_1.02 17 CCCTGCCCCCCCCTTCC
M6443_1.02 7 TGACCTC
M6445_1.02 11 GCCCTGACCTC
M6446_1.02 20 GTGACCTCTGGGTGACCCCC
M6448_1.02 12 GGGGGATTTCCC
M6449_1.02 12 TGGGGATTTCCC
M6451_1.02 12 GTTGCCAGGGAA
M6453_1.02 14 TTACCATGGCAACC
M6454_1.02 12 TGACCTAGTTTT
M6455_1.02 13 CTGACCTACTTTT
M6456_1.02 22 GGGGGGGGGGGTGGTTTGGGGT
M6457_1.02 10 TAACCACAGA
M6459_1.02 14 AACCACAAACCCCC
M6461_1.02 10 TGTGACCTCA
M6462_1.02 13 GTGACCTTTGACC
M6463_1.02 12 AGCCTGTCTGCC
M6464_1.02 11 GTGTCCGTCTG
M6465_1.02 10 GTGTCTGGCC
M6466_1.02 9 TGTCTGGCC
M6468_1.02 8 CCAGGTGG
M6469_1.02 7 CCAGGTG
M6470_1.02 7 TCTTTGT
M6471_1.02 8 CATTGTTC
M6472_1.02 7 CATTGTT
M6473_1.02 18 CAACAATCTTCATTGTCC
M6474_1.02 19 GGAAAAGAACAATGGGTTC
M6475_1.02 16 ATTTGCATAACAATGG
M6476_1.02 12 GAGAACAAAGCG
M6477_1.02 8 TAACAATA
M6478_1.02 11 AGAACAATGGG
M6482_1.02 20 GGGGGGGGGCGGGGCCGGGG
M6483_1.02 24 GGGGCCAGGGGGGGGGCGGGGCCG
M6485_1.02 12 AAAAAGAGGAAG
M6486_1.02 16 CGGCTGTTACCCTGGG
M6490_1.02 9 AAAACAAAA
M6491_1.02 12 TTTCCAGGAATT
M6492_1.02 13 TTTTCTGGGAATT
M6496_1.02 13 TTTCCCAGAAAAG
M6497_1.02 13 TTCCCAGGAATTT
M6498_1.02 9 TGACCTTGA
M6499_1.02 9 CGTGGGAAA
M6500_1.02 12 GACCATCTGTTC
M6503_1.02 25 GTCGCTTCTCACACCTCTGATGGCA
M6504_1.02 24 AGGTAGAGAATTAGGTGATAAAAA
M6505_1.02 8 AGGTGTGA
M6506_1.02 12 GCGCTTTGTTCT
M6507_1.02 14 CACATTCCTGCGCC
M6508_1.02 15 GATATTTCTGCTCTA
M6509_1.02 12 AAAAATAGCCCT
M6510_1.02 14 TGTTTATGTAAATG
M6513_1.02 11 GCCAGCTGCGG
M6514_1.02 16 GCCTGAACTGGCCAGA
M6515_1.02 14 AAATGGCGGGAAAC
M6516_1.02 11 GACCATCTGGT
M6517_1.02 10 GGTCATGTGG
M6518_1.02 9 GGTCACGTG
M6519_1.02 16 CAGGTGACACCTGACA
M6521_1.02 10 CTGACCTGAG
M6523_1.02 17 TGACCTGACCTGACCTC
M6525_1.02 11 CGCCAAGGAGC
M6527_1.02 10 CCCCAGGTGG
M6529_1.02 7 TCTCTGG
M6532_1.02 7 TGACCTC
M6534_1.02 11 TTAGCTAATTA
M6535_1.02 13 GCGGGGGCGGGGG
M6536_1.02 12 GACGTGTCATTA
M6537_1.02 11 GGGGATTGGCC
M6539_1.02 22 CGGAGAGGGGGAGGGGGGGGGC
M6540_1.02 15 CAATAGCGGTGGTGG
M6542_1.02 13 AGATGATAGAGCC
M6544_1.02 12 GGGGATTTCCCA
M6545_1.02 14 GGTAGGGAAACCCC
M6546_1.02 11 ATTAATAATTA
M6547_1.02 19 GGGGGCCCCAGGCCTCGGC
M6548_1.02 9 GGGGTGGTC
M6549_1.02 9 GGGGTGGTC
M6550_1.02 9 TGGGTGGTC
M6552_1.02 15 GGGGTGGGGGAGGGG
M6553_1.02 12 GAGGGGGGCGGA
M6554_1.02 14 TCCAGATGTTTCGG
M6555_1.02 9 CGATAATGA
M6556_1.02 24 GGGCAACAAATCCCTGCGCCCCGT
M6557_1.02 12 GGAAAAAGTCGG
M6558_1.02 15 GCACCCTTGGGTGCC
M6559_1.02 16 CCCACGGTTACTGCCG

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background):
A 0.194 C 0.306 G 0.306 T 0.194


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
M6279_1.02 HMGA1 chr12 - 6778773 6778779 1.02e-05 0.199 AAAATAT
M6279_1.02 HMGA1 chr19 - 10836393 10836399 1.02e-05 0.199 AAAATAT
M6279_1.02 HMGA1 chr17 + 18153699 18153705 1.02e-05 0.199 aaaaTAT
M6279_1.02 HMGA1 chr1 + 20633242 20633248 1.02e-05 0.199 aaaataT
M6279_1.02 HMGA1 chr13 + 27251414 27251420 1.02e-05 0.199 AAAATAT
M6279_1.02 HMGA1 chr8 + 28712349 28712355 1.02e-05 0.199 aaaatat
M6279_1.02 HMGA1 chr16 + 30571894 30571900 1.02e-05 0.199 AAAATAT
M6279_1.02 HMGA1 chr18 - 35240733 35240739 1.02e-05 0.199 AAAATAT
M6279_1.02 HMGA1 chr19 - 36139377 36139383 1.02e-05 0.199 AAAATAT
M6279_1.02 HMGA1 chr13 + 38349623 38349629 1.02e-05 0.199 AAAATAT
M6279_1.02 HMGA1 chr19 - 43934738 43934744 1.02e-05 0.199 AAAATAT
M6279_1.02 HMGA1 chr19 - 43951283 43951289 1.02e-05 0.199 AAAATAT
M6279_1.02 HMGA1 chr19 - 44071832 44071838 1.02e-05 0.199 AAAATAT
M6279_1.02 HMGA1 chr19 - 44141270 44141276 1.02e-05 0.199 AAAATAT
M6279_1.02 HMGA1 chr19 - 44212061 44212067 1.02e-05 0.199 AAAATAT
M6279_1.02 HMGA1 chr19 + 48899754 48899760 1.02e-05 0.199 aaaatat
M6279_1.02 HMGA1 chr19 - 55118215 55118221 1.02e-05 0.199 AAAATAT
M6279_1.02 HMGA1 chr17 - 73232577 73232583 1.02e-05 0.199 AAAATAT
M6279_1.02 HMGA1 chr12 - 76630641 76630647 1.02e-05 0.199 AAAATAT
M6279_1.02 HMGA1 chr9 + 99222058 99222064 1.02e-05 0.199 AAAATAT
M6279_1.02 HMGA1 chr9 - 99222082 99222088 1.02e-05 0.199 AAAATAT
M6279_1.02 HMGA1 chr7 - 100428430 100428436 1.02e-05 0.199 AAAATAT
M6279_1.02 HMGA1 chr5 - 149729679 149729685 1.02e-05 0.199 AAAATAT
M6279_1.02 HMGA1 chr1 - 151717379 151717385 1.02e-05 0.199 AAAATAT
M6279_1.02 HMGA1 chr1 + 233329308 233329314 1.02e-05 0.199 AAAATAT
M6279_1.02 HMGA1 chr17 + 4731015 4731021 2.64e-05 0.199 aaaatac
M6279_1.02 HMGA1 chr19 + 7294730 7294736 2.64e-05 0.199 aaaatac
M6279_1.02 HMGA1 chr3 + 9987051 9987057 2.64e-05 0.199 aaaatac
M6279_1.02 HMGA1 chr17 + 16387240 16387246 2.64e-05 0.199 aaaatac
M6279_1.02 HMGA1 chr19 + 17511343 17511349 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr17 + 28854793 28854799 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr18 - 35240628 35240634 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr19 + 36667341 36667347 2.64e-05 0.199 aaaatac
M6279_1.02 HMGA1 chr19 + 37172654 37172660 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr19 - 37317359 37317365 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr19 + 38243722 38243728 2.64e-05 0.199 aaaatac
M6279_1.02 HMGA1 chr22 + 39039812 39039818 2.64e-05 0.199 aaaatac
M6279_1.02 HMGA1 chr19 - 39073437 39073443 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr17 - 39927855 39927861 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr7 + 42856936 42856942 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr19 - 43670547 43670553 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr19 - 44051878 44051884 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr19 - 44094031 44094037 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr19 - 44259670 44259676 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr10 - 45249790 45249796 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr17 + 48830607 48830613 2.64e-05 0.199 aaaatac
M6279_1.02 HMGA1 chr12 - 49234989 49234995 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr12 - 49842252 49842258 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr12 + 56115982 56115988 2.64e-05 0.199 aaaatac
M6279_1.02 HMGA1 chr18 + 62714910 62714916 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr2 + 68157705 68157711 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr2 - 70087206 70087212 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr2 + 70087243 70087249 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr1 + 71081209 71081215 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr16 + 71485288 71485294 2.64e-05 0.199 aaaatac
M6279_1.02 HMGA1 chr16 - 75565552 75565558 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr17 + 80148066 80148072 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr3 + 87226946 87226952 2.64e-05 0.199 aaaatac
M6279_1.02 HMGA1 chr16 - 87382804 87382810 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr10 + 102169813 102169819 2.64e-05 0.199 aaaatac
M6279_1.02 HMGA1 chr12 + 104063941 104063947 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr4 + 106316371 106316377 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr12 + 110404003 110404009 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr13 + 114282290 114282296 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr5 - 149729763 149729769 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr2 + 177148534 177148540 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr4 + 185425606 185425612 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr1 - 204507776 204507782 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr1 - 228130844 228130850 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr1 + 233329492 233329498 2.64e-05 0.199 aaaatac
M6279_1.02 HMGA1 chr1 - 244834147 244834153 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr1 - 244834388 244834394 2.64e-05 0.199 AAAATAC
M6279_1.02 HMGA1 chr3 + 4475309 4475315 3.66e-05 0.199 AAAATAA
M6279_1.02 HMGA1 chr19 - 7294750 7294756 3.66e-05 0.199 AAAATAA
M6279_1.02 HMGA1 chr17 + 8127151 8127157 3.66e-05 0.199 aaaataa
M6279_1.02 HMGA1 chr19 + 10836449 10836455 3.66e-05 0.199 AAAATAA
M6279_1.02 HMGA1 chr6 - 11043195 11043201 3.66e-05 0.199 AAAATAA
M6279_1.02 HMGA1 chr20 + 24993165 24993171 3.66e-05 0.199 AAAATAA
M6279_1.02 HMGA1 chr12 - 25195645 25195651 3.66e-05 0.199 AAAATAA
M6279_1.02 HMGA1 chr21 - 33404438 33404444 3.66e-05 0.199 AAAATAA
M6279_1.02 HMGA1 chr20 - 35955052 35955058 3.66e-05 0.199 AAAATAA
M6279_1.02 HMGA1 chr19 + 38243962 38243968 3.66e-05 0.199 aaaataa
M6279_1.02 HMGA1 chr19 + 38243967 38243973 3.66e-05 0.199 aaaataa
M6279_1.02 HMGA1 chr13 - 39038195 39038201 3.66e-05 0.199 AAAATAA
M6279_1.02 HMGA1 chr19 - 43596389 43596395 3.66e-05 0.199 AAAATAA
M6279_1.02 HMGA1 chr19 - 44212167 44212173 3.66e-05 0.199 AAAATAA
M6279_1.02 HMGA1 chr19 + 48899997 48900003 3.66e-05 0.199 AAAATAA
M6279_1.02 HMGA1 chr19 - 48900056 48900062 3.66e-05 0.199 AAAATAA
M6279_1.02 HMGA1 chr15 + 51267321 51267327 3.66e-05 0.199 aaaataa
M6279_1.02 HMGA1 chr12 - 54325475 54325481 3.66e-05 0.199 AAAATAA
M6279_1.02 HMGA1 chr19 - 55118044 55118050 3.66e-05 0.199 AAAATAA
M6279_1.02 HMGA1 chr4 - 56301452 56301458 3.66e-05 0.199 AAAATAA
M6279_1.02 HMGA1 chr18 + 62714875 62714881 3.66e-05 0.199 AAAATAA
M6279_1.02 HMGA1 chr10 - 69180020 69180026 3.66e-05 0.199 AAAATAA
M6279_1.02 HMGA1 chr2 + 70087174 70087180 3.66e-05 0.199 AAAATAA
M6279_1.02 HMGA1 chrX + 76149093 76149099 3.66e-05 0.199 aaaataa
M6279_1.02 HMGA1 chr17 + 77331200 77331206 3.66e-05 0.199 aaaaTAA
M6279_1.02 HMGA1 chr10 + 92591494 92591500 3.66e-05 0.199 aaaataa
M6279_1.02 HMGA1 chr12 - 108561317 108561323 3.66e-05 0.199 AAAATAA
M6279_1.02 HMGA1 chr12 - 110403841 110403847 3.66e-05 0.199 AAAATAA
M6279_1.02 HMGA1 chr5 + 138178903 138178909 3.66e-05 0.199 AAAATAA
M6279_1.02 HMGA1 chr1 - 150234302 150234308 3.66e-05 0.199 AAAATAA
M6279_1.02 HMGA1 chr1 + 151327518 151327524 3.66e-05 0.199 AAAATAA
M6279_1.02 HMGA1 chr1 + 151327526 151327532 3.66e-05 0.199 AAAATAA
M6279_1.02 HMGA1 chr1 + 151327531 151327537 3.66e-05 0.199 AAAATAA
M6279_1.02 HMGA1 chr5 + 174323725 174323731 3.66e-05 0.199 aaAATAA
M6279_1.02 HMGA1 chr3 + 197950037 197950043 3.66e-05 0.199 AAAATAA
M6279_1.02 HMGA1 chr1 - 224330350 224330356 3.66e-05 0.199 AAAATAA
M6279_1.02 HMGA1 chr19 - 7294810 7294816 4.69e-05 0.212 AAAATTT
M6279_1.02 HMGA1 chr10 + 7411168 7411174 4.69e-05 0.212 AAAATTT
M6279_1.02 HMGA1 chr16 - 29805336 29805342 4.69e-05 0.212 AAAATTT
M6279_1.02 HMGA1 chr6 + 31826933 31826939 4.69e-05 0.212 AAAATTT
M6279_1.02 HMGA1 chr6 - 31826934 31826940 4.69e-05 0.212 AAAATTT
M6279_1.02 HMGA1 chr6 + 31827101 31827107 4.69e-05 0.212 AAAATTT
M6279_1.02 HMGA1 chr21 - 33641959 33641965 4.69e-05 0.212 AAAATTT
M6279_1.02 HMGA1 chr18 - 35240620 35240626 4.69e-05 0.212 AAAATTT
M6279_1.02 HMGA1 chr19 + 36667246 36667252 4.69e-05 0.212 AAAattt
M6279_1.02 HMGA1 chr19 - 36667247 36667253 4.69e-05 0.212 AAAATTT
M6279_1.02 HMGA1 chr19 + 41397649 41397655 4.69e-05 0.212 AAAATTT
M6279_1.02 HMGA1 chr19 - 41397650 41397656 4.69e-05 0.212 AAAATTT
M6279_1.02 HMGA1 chr19 + 48899745 48899751 4.69e-05 0.212 AAAATTT
M6279_1.02 HMGA1 chr12 + 49234819 49234825 4.69e-05 0.212 AAAAttt
M6279_1.02 HMGA1 chr12 - 49234820 49234826 4.69e-05 0.212 AAAATTT
M6279_1.02 HMGA1 chr2 + 60569626 60569632 4.69e-05 0.212 AAAATTT
M6279_1.02 HMGA1 chr2 - 60569627 60569633 4.69e-05 0.212 AAAATTT
M6279_1.02 HMGA1 chr17 + 67366776 67366782 4.69e-05 0.212 AAAATTT
M6279_1.02 HMGA1 chr10 - 74150905 74150911 4.69e-05 0.212 AAAATTT
M6279_1.02 HMGA1 chr16 + 75433804 75433810 4.69e-05 0.212 aaaattt
M6279_1.02 HMGA1 chr6 + 77369107 77369113 4.69e-05 0.212 aaaattt
M6279_1.02 HMGA1 chr17 - 80147908 80147914 4.69e-05 0.212 AAAATTT
M6279_1.02 HMGA1 chr19 - 7294683 7294689 6.3e-05 0.227 AAAATAG
M6279_1.02 HMGA1 chr19 + 10836605 10836611 6.3e-05 0.227 AAAATAG
M6279_1.02 HMGA1 chr1 - 11980761 11980767 6.3e-05 0.227 AAAATAG
M6279_1.02 HMGA1 chr18 - 13800824 13800830 6.3e-05 0.227 AAAATAG
M6279_1.02 HMGA1 chr14 - 34982802 34982808 6.3e-05 0.227 AAAATAG
M6279_1.02 HMGA1 chr19 + 37210477 37210483 6.3e-05 0.227 AAAATAG
M6279_1.02 HMGA1 chr19 - 40191125 40191131 6.3e-05 0.227 AAAATAG
M6279_1.02 HMGA1 chr19 - 44002580 44002586 6.3e-05 0.227 AAAATAG
M6279_1.02 HMGA1 chr12 - 48716610 48716616 6.3e-05 0.227 AAAATAG
M6279_1.02 HMGA1 chr12 - 56116348 56116354 6.3e-05 0.227 AAAATAG
M6279_1.02 HMGA1 chr2 - 60569358 60569364 6.3e-05 0.227 AAAATAG
M6279_1.02 HMGA1 chr15 + 75456458 75456464 6.3e-05 0.227 aaaatag
M6279_1.02 HMGA1 chr14 - 88824745 88824751 6.3e-05 0.227 AAAATAG
M6279_1.02 HMGA1 chr10 + 92591423 92591429 6.3e-05 0.227 aaaatag
M6279_1.02 HMGA1 chr2 - 95345797 95345803 6.3e-05 0.227 AAAATAG
M6279_1.02 HMGA1 chr11 + 118401301 118401307 6.3e-05 0.227 AAAATAG
M6279_1.02 HMGA1 chr1 - 151763623 151763629 6.3e-05 0.227 AAAATAG
M6279_1.02 HMGA1 chr1 - 204507404 204507410 6.3e-05 0.227 AAAATAG
M6279_1.02 HMGA1 chr1 + 235328704 235328710 6.3e-05 0.227 AAAATAG
M6279_1.02 HMGA1 chr16 + 4271004 4271010 7.92e-05 0.227 aaaattc
M6279_1.02 HMGA1 chr16 - 4271048 4271054 7.92e-05 0.227 AAAATTC
M6279_1.02 HMGA1 chr3 + 4475241 4475247 7.92e-05 0.227 aaaattc
M6279_1.02 HMGA1 chr17 - 5486573 5486579 7.92e-05 0.227 AAAATTC
M6279_1.02 HMGA1 chr7 - 10940351 10940357 7.92e-05 0.227 AAAATTC
M6279_1.02 HMGA1 chr10 - 12043128 12043134 7.92e-05 0.227 AAAATTC
M6279_1.02 HMGA1 chr19 - 17511326 17511332 7.92e-05 0.227 AAAATTC
M6279_1.02 HMGA1 chr6 + 31834710 31834716 7.92e-05 0.227 AAAATTC
M6279_1.02 HMGA1 chr19 - 34734171 34734177 7.92e-05 0.227 AAAATTC
M6279_1.02 HMGA1 chr6 - 36028370 36028376 7.92e-05 0.227 AAAATTC
M6279_1.02 HMGA1 chr19 + 36139789 36139795 7.92e-05 0.227 AAAATTC
M6279_1.02 HMGA1 chr17 - 39927806 39927812 7.92e-05 0.227 AAAATTC
M6279_1.02 HMGA1 chr19 - 43984051 43984057 7.92e-05 0.227 AAAATTC
M6279_1.02 HMGA1 chr19 - 44212320 44212326 7.92e-05 0.227 AAAATTC
M6279_1.02 HMGA1 chr19 - 44212320 44212326 7.92e-05 0.227 AAAATTC
M6279_1.02 HMGA1 chr11 + 46237361 46237367 7.92e-05 0.227 aaaattc
M6279_1.02 HMGA1 chr12 + 48681684 48681690 7.92e-05 0.227 AAAATTC
M6279_1.02 HMGA1 chr12 + 49235263 49235269 7.92e-05 0.227 AAAATTC
M6279_1.02 HMGA1 chr2 + 55232419 55232425 7.92e-05 0.227 AAAATTC
M6279_1.02 HMGA1 chr5 + 77086616 77086622 7.92e-05 0.227 AAAATTC
M6279_1.02 HMGA1 chr1 + 151327536 151327542 7.92e-05 0.227 AAAATTC
M6279_1.02 HMGA1 chr7 - 157007657 157007663 7.92e-05 0.227 AAAATTC
M6279_1.02 HMGA1 chr1 - 178542501 178542507 7.92e-05 0.227 AAAATTC
M6279_1.02 HMGA1 chr3 + 193593633 193593639 7.92e-05 0.227 AAAATTC
M6279_1.02 HMGA1 chr1 + 224330296 224330302 7.92e-05 0.227 AAAATTC
M6279_1.02 HMGA1 chr1 + 227319496 227319502 7.92e-05 0.227 AAAATTC
M6279_1.02 HMGA1 chr1 - 235328903 235328909 7.92e-05 0.227 AAAATTC
M6279_1.02 HMGA1 chr6 + 1391889 1391895 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr3 + 9987061 9987067 8.95e-05 0.227 aaaatta
M6279_1.02 HMGA1 chr19 + 10836440 10836446 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr7 + 10940120 10940126 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr17 + 16387249 16387255 8.95e-05 0.227 aaaatta
M6279_1.02 HMGA1 chr19 - 17511185 17511191 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr17 + 18153544 18153550 8.95e-05 0.227 aaaatta
M6279_1.02 HMGA1 chr20 + 24993209 24993215 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr19 + 36054667 36054673 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr19 - 36667082 36667088 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr19 + 36667348 36667354 8.95e-05 0.227 aaaatta
M6279_1.02 HMGA1 chr19 - 37317350 37317356 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr20 - 37528087 37528093 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr19 + 38243730 38243736 8.95e-05 0.227 aaaatta
M6279_1.02 HMGA1 chr19 + 38243930 38243936 8.95e-05 0.227 aaaatta
M6279_1.02 HMGA1 chr22 + 39039820 39039826 8.95e-05 0.227 aaaatta
M6279_1.02 HMGA1 chr22 + 39039896 39039902 8.95e-05 0.227 aaaatta
M6279_1.02 HMGA1 chr19 - 39073429 39073435 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr7 - 42857135 42857141 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr7 - 42857150 42857156 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr19 - 44212053 44212059 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr19 - 44259662 44259668 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr10 - 45249779 45249785 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr17 + 48830615 48830621 8.95e-05 0.227 aaaatta
M6279_1.02 HMGA1 chr12 + 49235127 49235133 8.95e-05 0.227 aaaaTTA
M6279_1.02 HMGA1 chr12 + 49235238 49235244 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr12 - 49842243 49842249 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr20 - 49928708 49928714 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr19 - 55118207 55118213 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr12 + 56115990 56115996 8.95e-05 0.227 aaaatta
M6279_1.02 HMGA1 chr11 + 59171853 59171859 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr15 + 64093632 64093638 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr16 - 70523662 70523668 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr16 + 70523753 70523759 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr16 + 71485296 71485302 8.95e-05 0.227 aaaatta
M6279_1.02 HMGA1 chr16 + 75433655 75433661 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr16 - 75565544 75565550 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chrX - 76148878 76148884 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr12 + 76630860 76630866 8.95e-05 0.227 aaaatta
M6279_1.02 HMGA1 chr17 - 80147899 80147905 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr16 - 87382625 87382631 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr16 - 87382796 87382802 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr16 + 87766288 87766294 8.95e-05 0.227 aaaatta
M6279_1.02 HMGA1 chr7 - 94510696 94510702 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr10 + 102169822 102169828 8.95e-05 0.227 aaaatta
M6279_1.02 HMGA1 chr12 + 104063732 104063738 8.95e-05 0.227 aaaatta
M6279_1.02 HMGA1 chr11 + 118401491 118401497 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr9 + 132670175 132670181 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr5 - 149729752 149729758 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr1 - 156082668 156082674 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr1 - 204507768 204507774 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr1 - 204507863 204507869 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr1 + 231528407 231528413 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr1 + 233329500 233329506 8.95e-05 0.227 aaaatta
M6279_1.02 HMGA1 chr1 - 244834139 244834145 8.95e-05 0.227 AAAATTA
M6279_1.02 HMGA1 chr19 + 36139374 36139380 9.97e-05 0.246 ATAATAT
M6279_1.02 HMGA1 chr8 + 41491153 41491159 9.97e-05 0.246 ATAATAT
M6279_1.02 HMGA1 chr17 + 73232539 73232545 9.97e-05 0.246 ATAATAT
M6279_1.02 HMGA1 chr10 - 95908301 95908307 9.97e-05 0.246 ATAATAT
M6279_1.02 HMGA1 chr10 + 103367528 103367534 9.97e-05 0.246 ataatat
M6279_1.02 HMGA1 chr5 + 177312639 177312645 9.97e-05 0.246 ATAATAT
M6279_1.02 HMGA1 chr4 + 185425531 185425537 9.97e-05 0.246 ATAATAT

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_12 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background --motif M6279_1.02 /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/fimo_out_12 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResultsDefaultMax/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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