Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
M0085_1.02 10 TCGCCTGAGG
M0104_1.02 11 ATATTAATTAA
M0105_1.02 9 TTTTAATTG
M0108_1.02 11 GATAATATTGA
M0177_1.02 10 GCCATATGTT
M0178_1.02 10 GACAGCTGTC
M0189_1.02 8 GCACGTGA
M0195_1.02 10 ACCATATGGT
M0196_1.02 10 GGCACGTGTC
M0198_1.02 10 AGCCCGTGCG
M0199_1.02 13 TAACGACACGTGC
M0211_1.02 8 GCACGTGT
M0212_1.02 10 GGCACGTGCC
M0214_1.02 9 AACATATGG
M0216_1.02 10 CGCAGCTGTG
M0217_1.02 10 ACCATATGGT
M0300_1.02 10 AATGACGTCA
M0305_1.02 9 GCCACGTGT
M0307_1.02 8 ATACGTTG
M0395_1.02 8 GTACTAAT
M0396_1.02 10 AACGGTAGCA
M0398_1.02 11 AGGAAGTGCAA
M0404_1.02 10 AAGGGGGGCA
M0405_1.02 10 TGGGCGTGGC
M0408_1.02 10 ATGTGCACAT
M0413_1.02 10 GGTGCGGGAC
M0415_1.02 8 ATAACGGT
M0422_1.02 10 CCGGGGGGTC
M0424_1.02 10 TTTGACAGCT
M0428_1.02 8 AGGAGCAC
M0431_1.02 9 ACGGTAGCA
M0432_1.02 9 CGCGCGCAC
M0433_1.02 10 ATCTAGAACA
M0436_1.02 10 TTGTTTATTG
M0437_1.02 9 TATATATAT
M0442_1.02 9 CATGCAGTG
M0443_1.02 10 TGGGCGTGGC
M0594_1.02 9 ATTTGAATT
M0603_1.02 7 TTAGCGG
M0607_1.02 9 GCGTAAATA
M0608_1.02 10 GGGGGCGTAA
M0609_1.02 10 CCCCGCGGCC
M0610_1.02 9 ATCGCGTTA
M0629_1.02 11 AATGTATCAAT
M0630_1.02 10 AATGTATCAA
M0632_1.02 10 AATGTATCAA
M0633_1.02 10 TAATGTATTA
M0635_1.02 13 AACATGTATAAAA
M0714_1.02 10 AACCGGAAGT
M0718_1.02 10 ATGTAAACAA
M0719_1.02 8 GTAAACAA
M0728_1.02 12 AGTAAACAAACA
M0736_1.02 8 GTAAACAA
M0737_1.02 10 TATGTAAACA
M0747_1.02 10 AATGTAAACA
M0756_1.02 9 GTAAACAAA
M0887_1.02 9 CCTAATGAG
M0890_1.02 8 GTAATCAA
M0891_1.02 10 TTAATTGGTT
M0892_1.02 10 CCTAATTACC
M0893_1.02 10 GTTAATTAAC
M0894_1.02 8 TTAATTAG
M0896_1.02 8 TTAATTAG
M0897_1.02 10 TTTTATGGGC
M0898_1.02 8 TTACGTAA
M0900_1.02 8 TTAATTGG
M0901_1.02 8 CTTGTCAA
M0905_1.02 9 TTAATGACC
M0906_1.02 10 AATTAATTAG
M0931_1.02 9 TAATTAATT
M0937_1.02 7 TGATACC
M0942_1.02 8 TTGTAATG
M0943_1.02 8 GCTAATTA
M0949_1.02 7 TTAATGA
M0952_1.02 8 TGATACCC
M0958_1.02 7 CTAATTA
M0961_1.02 9 CTAATTGGT
M0969_1.02 9 CCAATCAGC
M0975_1.02 9 TAATTAATT
M0994_1.02 9 ATGATACCC
M0996_1.02 7 GAAATCA
M0999_1.02 9 ATTAATTAC
M1007_1.02 9 TTTATGACC
M1012_1.02 9 TTAATGACC
M1016_1.02 7 GTGATAC
M1018_1.02 7 TAATTAA
M1025_1.02 8 GCCAATTA
M1027_1.02 9 TTAATTACC
M1030_1.02 9 GCCACTTAA
M1034_1.02 7 GCAATTA
M1039_1.02 9 GCTAATTGG
M1049_1.02 10 ATGATACCCC
M1070_1.02 9 TTAATGACC
M1071_1.02 8 TTAATGAC
M1073_1.02 9 TTAATGACC
M1110_1.02 10 GGGCAATAGA
M1125_1.02 10 GCTAATTGGC
M1157_1.02 10 TTTTATGACC
M1163_1.02 9 ATTAATTAC
M1266_1.02 10 GACCGAAACC
M1281_1.02 9 CTTACGCAA
M1358_1.02 9 TAACCCTAG
M1359_1.02 10 GTTTGCGCCA
M1418_1.02 8 TGGTACCA
M1432_1.02 10 ATTGACCTCT
M1458_1.02 10 ACTGACCTCG
M1507_1.02 10 AATTTTGGCT
M1528_1.02 10 CCATGGCAAC
M1529_1.02 10 CCATAGCAAC
M1545_1.02 9 CGTACGTCA
M1581_1.02 10 TTTGCTGACT
M1582_1.02 11 ATATATAATAA
M1583_1.02 8 TTCATTGA
M1589_1.02 10 GCAGAACAAT
M1592_1.02 8 AAAACAAT
M1594_1.02 10 CATTGTTCTT
M1601_1.02 9 ATTGTTCTC
M1605_1.02 10 ATTCATCTTC
M1628_1.02 11 AGGTGTGAAGA
M1668_1.02 12 TCCAAACGAGAT
M1838_1.02 15 CATTGCCTCAGGGCA
M1841_1.02 15 GAACACTCTGTTCTT
M1863_1.02 8 GTAAACAT
M1868_1.02 14 ACAGATAAGAATCT
M1871_1.02 10 TGGGTGGGGC
M1882_1.02 21 AAAGTGAAAGTGAAAGTAAAA
M1884_1.02 15 AGCTAAAAATAGCAT
M1889_1.02 10 AAGCACATGG
M1890_1.02 18 AGAGTGCTGATTGGTCCA
M1906_1.02 11 GGGGGCGGGGC
M1915_1.02 20 GCAAGGCATGATGGGAAATC
M1917_1.02 11 GGTCACGTGGC
M1919_1.02 12 CAAGATGGCGGC
M1925_1.02 11 TATTGTGCAAT
M1926_1.02 9 CAGGTGAGG
M1927_1.02 8 GCCACGTG
M1928_1.02 11 GGGAATTTCCC
M1929_1.02 15 CATGTCTGGGCATGT
M1934_1.02 20 AGGTCAGGGTGACCTGGGCC
M1950_1.02 6 GTGGAT
M1955_1.02 11 TTTCCAGGAAA
M1963_1.02 14 GGGGCCGAGGCCTG
M1968_1.02 11 TCCCTGGGGAC
M1970_1.02 6 TGCCAA
M2065_1.02 15 AGGTCAGGGTGACCT
M2264_1.02 8 GCCATCTG
M2267_1.02 11 TTTTATGGCTT
M2268_1.02 11 TATTGCACAAT
M2270_1.02 11 TAATCTAATCA
M2273_1.02 11 GGGCGGGAAGG
M2275_1.02 13 GAACCAGGAAGTG
M2277_1.02 11 ACAGGAAGTGG
M2278_1.02 11 TGTGACTCATT
M2281_1.02 11 TCCAATCCACA
M2283_1.02 15 CAAAAGTAAACAAAG
M2286_1.02 15 TGGACTTTGGACTCT
M2287_1.02 13 GGCCATAAATCAC
M2289_1.02 13 AAGATGATGTCAT
M2292_1.02 11 GGTGACTCATC
M2296_1.02 15 CTGAGTCAGCAATTT
M2299_1.02 13 AGGGACAGCTGCA
M2301_1.02 15 AAATGGACCAATCAG
M2303_1.02 15 TGACCTCTGACCCCG
M2305_1.02 11 TGCGCAGGCGC
M2306_1.02 13 TTCATTTGCATAT
M2307_1.02 15 AGAAAGTGAAAGTGA
M2310_1.02 15 CAAACCACAAACCCC
M2313_1.02 10 CCATTGTTTT
M2314_1.02 15 GGGAGGGGGCGGGGC
M2319_1.02 14 TTCCTTTGATCTTT
M2321_1.02 20 AGACATGCCCAGACATGCCC
M2323_1.02 15 CAGATCTCGCGAGAG
M2385_1.02 11 AAGTAAACAGA
M2387_1.02 10 GTGGGGTGAT
M2388_1.02 10 ATGGGGTGAT
M2390_1.02 8 CAGGAAGG
M2391_1.02 10 GGGGCGGGGC
M2392_1.02 19 GTTGCCATGGCAACCGCGG
M4344_1.02 8 GGTTGCCA
M4427_1.02 21 GTGGCCACCAGGGGGCGCTGT
M4428_1.02 14 GGAACATTCTGTTC
M4438_1.02 15 AGGTCACGGTGACCT
M4444_1.02 14 AGGGGATTTCCCAG
M4451_1.02 11 GGTCACGTGAC
M4452_1.02 15 TCTCGATATGACTCA
M4453_1.02 15 AAGAGGAAGTGAAAC
M4454_1.02 15 AAATCTCGCGAGAAC
M4459_1.02 20 GTGCGGGGGCGGGGGGGGGG
M4461_1.02 21 GCCTTCTGGGAATTGTAGTTC
M4462_1.02 11 CGCCGGAAGTG
M4463_1.02 18 AATGTGGAAATGAGTCAG
M4467_1.02 15 GTGCCAAAAATAGCA
M4469_1.02 14 TCCATGGTGCTGAA
M4471_1.02 15 GCAGCCAAGCGTGAC
M4473_1.02 15 GCCGGCCAATCAGAG
M4476_1.02 15 TCACCTGTTGCTAGG
M4477_1.02 19 CCATGGCCATATAAGGCAA
M4478_1.02 20 CAGGTGATTTCCGGGAAATG
M4479_1.02 11 GCAGCAGCTGT
M4481_1.02 15 GGTCACGTGGCCCGG
M4484_1.02 15 CTGGGAATTGTAGTC
M4509_1.02 17 ATTTGCATAACAAAGGA
M4511_1.02 8 TGACCTCT
M4522_1.02 10 CCGGAAGTGG
M4525_1.02 15 AGCCTCAGGGCATGG
M4526_1.02 15 GGGGGGTGACTCAGC
M4527_1.02 21 GGACTACAACTCCCAGCAGGC
M4532_1.02 10 CCACGTGCTC
M4536_1.02 15 GGGGAGGGCGCGCGG
M4537_1.02 15 GGCGGGAAATTTGAA
M4543_1.02 11 GGAACCACGTG
M4545_1.02 15 AGAAAGTGAAAGTGA
M4551_1.02 17 TTCATACTGGAGAGAAA
M4553_1.02 10 GGTCACGTGC
M4565_1.02 14 CAGGATGAGTCACC
M4567_1.02 15 GCAAAGTAAACAGAG
M4569_1.02 18 GTCCCGGGTTCGAATCCC
M4572_1.02 15 TGCTGACTCAGCAAA
M4600_1.02 11 GCAGATAAGGA
M4604_1.02 21 GGGGAGGAGGGAGGGGAGGAG
M4612_1.02 15 CCGCCAGGGGGCGCC
M4619_1.02 11 GGGTGACTCAT
M4623_1.02 15 CGGTGACTCATCCTT
M4629_1.02 17 CATGACTCAGCAATTTT
M4635_1.02 15 GAAAATGAAACTGAA
M4636_1.02 21 CTGCCCTCATCCAAGATGGCG
M4640_1.02 15 GGGCGGGGGTCTCGG
M4665_1.02 15 CAGATAAGAATCTGT
M4680_1.02 8 GTCACGTG
M4681_1.02 10 TGCTGAGTCA
M4692_1.02 10 ACTACAACTC
M4698_1.02 15 CTGGACTTTGGCCTC
M4702_1.02 8 TGACCTTT
M4708_1.02 10 TATGCAAATA
M4840_1.02 11 AAATGCGCAAC
M4850_1.02 21 TGTTGTGTCCGTGCCATCTGG
M4930_1.02 11 AAATCGTGACT
M4971_1.02 10 GTAACAGCTG
M5116_1.02 9 ACCACCTGT
M5209_1.02 11 GTGGGCGTGGC
M5234_1.02 10 GGTCACGTAC
M5284_1.02 10 GCTAATTAGC
M5287_1.02 13 CTAATTAAATTAA
M5291_1.02 13 TTAATTTAATTAA
M5292_1.02 13 GGATGATGCAATA
M5293_1.02 14 CGATGACGTCATCG
M5294_1.02 10 GTTAAACGGT
M5300_1.02 17 TAATCGGTATTTAATTG
M5302_1.02 14 TGATGACGTCATCA
M5303_1.02 17 TGCTTTCTAGGAATTCA
M5304_1.02 10 ACCATATGGT
M5307_1.02 12 AAACATATGTTT
M5308_1.02 10 ACCATATGTT
M5310_1.02 8 TTAATTGG
M5320_1.02 15 CCCGCATACAACGAA
M5321_1.02 10 AACACGTGTT
M5322_1.02 8 TTTTTATT
M5323_1.02 14 TGATGACGTCACCG
M5325_1.02 14 TGATGACGTGGCAT
M5335_1.02 18 ATCGATAATTTTATCGAT
M5339_1.02 10 GATAATTAGG
M5342_1.02 8 GTAATTGG
M5343_1.02 8 ATAATTAC
M5344_1.02 8 GTAATTGG
M5345_1.02 10 GTTAATCCGC
M5346_1.02 10 GCTAATCCGT
M5348_1.02 13 CTAATCTAATTAA
M5349_1.02 13 CTAATTTAATCAA
M5363_1.02 12 TTTCCCGCCAAA
M5377_1.02 12 AACCCGGAAGTG
M5388_1.02 10 GCTAATTAGC
M5390_1.02 10 GCTAATTGGG
M5394_1.02 10 GTTAATTGGA
M5398_1.02 10 ACCGGAAGTG
M5414_1.02 10 GTTAATTGGG
M5420_1.02 10 ACCGGAAGTA
M5421_1.02 11 AACCGGAAATA
M5422_1.02 10 ACCGGAAGTG
M5425_1.02 15 CCGGAAGCGGAAGTG
M5427_1.02 10 GCTAATTACC
M5428_1.02 10 GCTAATTACC
M5430_1.02 10 ACCACCTGTT
M5435_1.02 14 TCGCTGTGTCATTC
M5445_1.02 14 AGTAAATATTTTTT
M5446_1.02 7 GTAAACA
M5460_1.02 7 GTAAACA
M5471_1.02 14 GTAAACATGTTTAC
M5480_1.02 10 GCTAATTGGT
M5481_1.02 10 GCTAATTGGT
M5487_1.02 10 TATGCGGGTA
M5490_1.02 16 GCTTCGTGGGGGGTCT
M5491_1.02 14 CTTCGCGGGGGGTC
M5493_1.02 8 GTACGTAA
M5497_1.02 17 AACCGGTTTAACCGGTT
M5500_1.02 10 GCTAATCCCC
M5501_1.02 10 CCTAATCCGC
M5502_1.02 10 TTTAATTAGG
M5503_1.02 10 TTTAATTAGT
M5504_1.02 12 TGGCACGTGCCG
M5506_1.02 12 TGGCACGTGCCA
M5509_1.02 10 GGCACGTGTC
M5512_1.02 9 GGTGGGCAT
M5517_1.02 10 ACTAGTTAAC
M5518_1.02 11 TTTTAATTGCT
M5519_1.02 11 TTTTAATTGGT
M5520_1.02 11 TGTTAATTGCT
M5530_1.02 12 TATAATCGTTTT
M5541_1.02 10 GTTAATTACT
M5542_1.02 10 GCTAATTAGT
M5543_1.02 10 CTTAATTAGT
M5544_1.02 10 TTTTTATGGG
M5547_1.02 11 GGTCGTAAAAT
M5551_1.02 9 TTTTATTAC
M5553_1.02 10 CCAATAAAAA
M5555_1.02 10 GTCGTAAAAA
M5557_1.02 9 GTAATAAAA
M5563_1.02 10 GCTAATTAGC
M5567_1.02 13 GAACGTTCTAGAA
M5568_1.02 15 TTCGAAACGTTCGAA
M5571_1.02 10 GACAGGTGTA
M5581_1.02 12 CATGTCATGTAC
M5582_1.02 12 CATGTCATGTAA
M5583_1.02 8 TTAAGTGC
M5584_1.02 13 TTAATCTAATTAA
M5587_1.02 9 ATGACTCAT
M5591_1.02 18 CAAAAAGGGGCGTGGCAT
M5592_1.02 14 AAGGGGGCGTGGCC
M5593_1.02 11 GGGGGCGTGGC
M5594_1.02 13 CTCGACCTAATTA
M5602_1.02 8 TTAATTGG
M5604_1.02 8 TTAATTAA
M5605_1.02 8 TTAATTAA
M5616_1.02 12 GCTATAAATAGC
M5621_1.02 8 CCTGTCAA
M5623_1.02 10 GCTAATTAAC
M5624_1.02 10 AGTAATTAAC
M5627_1.02 10 CGCAGGTGTT
M5628_1.02 8 AGGTGTGA
M5631_1.02 10 GTTAATTAGA
M5632_1.02 10 ATCACGTGAT
M5634_1.02 10 ACCACGTGCC
M5635_1.02 10 TTTAATTACC
M5636_1.02 10 AACAGCTGTT
M5637_1.02 18 TAATTGGTTTTTAATTGC
M5643_1.02 12 ACCGTTAAACGG
M5652_1.02 10 GCCATATGGT
M5653_1.02 10 GACATATGTT
M5660_1.02 15 TTGGCACGGTGCCAA
M5662_1.02 15 TTGGCACCGTGCCAG
M5664_1.02 15 TTGGCACCGTGCCAA
M5672_1.02 10 GCTAATTAGC
M5689_1.02 11 AATTTGCTGAC
M5690_1.02 10 AACATATGTT
M5691_1.02 10 ACCATATGTT
M5693_1.02 10 ACCATATGTT
M5697_1.02 14 ATTATTGATTTTTT
M5702_1.02 17 TGCAGTCATGCGTGACG
M5704_1.02 10 TAATCGATTA
M5705_1.02 8 CTAATTAG
M5709_1.02 10 TAATCGATTA
M5711_1.02 17 TGCAGTCATGCGTGACG
M5714_1.02 11 TAATTTAATTA
M5715_1.02 11 TAATTTAATTA
M5717_1.02 9 CTTAATCCC
M5720_1.02 9 CTTAATCCC
M5722_1.02 12 TGACACCTGTCA
M5729_1.02 9 ATTTGCATA
M5735_1.02 13 AAATTAGCATAAT
M5738_1.02 9 ATTTGCATA
M5740_1.02 14 ATGAATAATTAATG
M5743_1.02 16 ATGCATAATTAATGAG
M5744_1.02 9 ATTTGCATA
M5746_1.02 10 ATAATGAGCT
M5750_1.02 13 GGGGGCCTTGAAA
M5753_1.02 12 CAAGACGCCTTA
M5771_1.02 10 GTTAATTGGC
M5772_1.02 8 TTAATTGG
M5777_1.02 16 CGTTGCCATGGCAACG
M5782_1.02 9 GGATAATCC
M5804_1.02 15 GAGCAACAGGTGGTT
M5805_1.02 13 ATGCAACAGGTGG
M5807_1.02 8 CTAATTGG
M5815_1.02 12 ACAATAACATTG
M5825_1.02 15 AACACTACCATTGTT
M5835_1.02 16 AACAATGTTCATTGTT
M5838_1.02 16 AACAATGTGCAGTGTT
M5856_1.02 12 AGTGGGCGTGGC
M5857_1.02 11 ACCCGGATGTA
M5865_1.02 14 AAAAAGAGGAAGTA
M5873_1.02 10 AGGTGTGAAA
M5875_1.02 20 AGGTGTGAAAAAAGGTGTGA
M5880_1.02 19 AGGTGTGAAATTCACACCT
M5882_1.02 20 TTTCACACCTAGGTGTGAAA
M5883_1.02 16 TCACACCTTCACACCT
M5889_1.02 16 GGTGTGAATTCACACC
M5896_1.02 8 AGGTGTGA
M5903_1.02 12 AAAGATCAAAGG
M5932_1.02 10 GTCACGTGAT
M5934_1.02 12 TGACAGCTGTCA
M5935_1.02 12 TGACAGCTGTCA
M5941_1.02 13 CTAATTTAATTAG
M5944_1.02 8 CTAATTAC
M5945_1.02 8 CTAATTAC
M5949_1.02 8 CTAATTAG
M5955_1.02 11 TAATGGCGGAC
M5958_1.02 13 TATGTCGCGATAG
M5959_1.02 17 TTTCGCCTGGCACGTCA
M5962_1.02 12 TTCGGTGGTCGC
M5965_1.02 15 GCACAGCGGGGGGTC
M5967_1.02 19 ATGTTAAATGTAGATTAAG
M5970_1.02 17 GTCGTGTTGTGGGAAAG
M5971_1.02 14 TCGAGGCTAGCCCA
M5972_1.02 17 GAGTATTATGGGATGGA
M5973_1.02 18 AGGTGTTCTGTTAACACT
M5974_1.02 12 GGGTTCGAGGGT
M5976_1.02 17 TTCGTGGCATTTTTCTA
M5977_1.02 10 GTGGGGGGGG
M5979_1.02 12 TGTGGGAAAAGC
M5980_1.02 10 AGGTAGGTAC
M5981_1.02 15 TTTTCAGTGTGTGCA
M5998_1.02 12 GGTGACGTCATT
M6037_1.02 12 TTTGTCATGTAG
M6111_1.02 13 AGAAAGGGTTAAT
M6114_1.02 10 AAAGCAAACA
M6115_1.02 15 CATGTCTGGGCATGT
M6119_1.02 15 AAAAAGAGGAAGTGG
M6123_1.02 15 GGGGTGGGGGAGGGG
M6131_1.02 21 CCGGTTCAAACCGGTTCTGGC
M6139_1.02 9 GCACGCAAC
M6140_1.02 18 ATTGGTTTTATTGGTTAA
M6141_1.02 12 TAATCCAATTAT
M6144_1.02 10 GCCCCCGGGC
M6146_1.02 14 ACGCGCCTCGGGCG
M6147_1.02 22 TTTAATTTGATTTCGATTAATT
M6149_1.02 13 GGTTGGTATTGTG
M6150_1.02 12 GCCTCCCACGCC
M6151_1.02 8 TCACGTGC
M6152_1.02 10 GTGACGTCAC
M6154_1.02 12 TAAGGAAGAAGG
M6155_1.02 12 GTGGTGACGTGG
M6157_1.02 10 TCATTAATTG
M6159_1.02 16 TTCCTAGAAAGCTTTT
M6161_1.02 20 ACCGGGCCACGTGCAGAGGG
M6162_1.02 14 GGGTCACGTGTCCA
M6163_1.02 12 TTTGTTGTGTTC
M6164_1.02 25 ACATAGTGACACCTAGGTGTGAAAT
M6166_1.02 15 ATTATGTTAAATCCC
M6167_1.02 8 ACATAAAT
M6171_1.02 11 AATTGTGCAAT
M6172_1.02 12 AAGATTGCGCAA
M6173_1.02 13 CAGATTGCAAAAT
M6174_1.02 11 AGCCAATCAGC
M6176_1.02 12 TGACCTTTGACC
M6180_1.02 9 GTGACGTCA
M6181_1.02 11 CACTGACGTCA
M6182_1.02 8 CTAATCCC
M6184_1.02 14 AGGGGGATCGATGG
M6185_1.02 7 CGTTGGC
M6186_1.02 11 TGTTACATAAC
M6187_1.02 13 GGGGATTGCATTC
M6188_1.02 8 ATAATTAT
M6189_1.02 10 GCTAATTACA
M6191_1.02 10 GGCGCGAAAC
M6192_1.02 10 CGCGCGAAAC
M6194_1.02 10 CGCGCCAAAC
M6196_1.02 13 TAGGGCGCGAAAC
M6197_1.02 9 CGTGACGTC
M6199_1.02 11 GGCGTGGGCGG
M6200_1.02 11 AGAGTGGGTGT
M6201_1.02 11 GGCGGCAGGGC
M6204_1.02 15 TAGCAGGAAGTGAGT
M6205_1.02 14 GGCAAACAGGAAAT
M6206_1.02 11 ATAAGGAAGTA
M6207_1.02 9 ACCGGAAGT
M6208_1.02 12 CCCAGGAAGTGC
M6210_1.02 13 TGCCCACGTGGTG
M6211_1.02 14 CGGGGATACGAAAT
M6212_1.02 13 CCCACGTACGCAC
M6213_1.02 11 ACCGGAAATCC
M6215_1.02 9 TGACCTTGA
M6216_1.02 9 TGACCTTGA
M6221_1.02 11 GCGGGAAGTGG
M6222_1.02 8 CAGGAAGT
M6223_1.02 13 GACAGGAAGTAAC
M6224_1.02 17 GCCACAGGAAGTAACAC
M6225_1.02 16 AAGATAAGATAAGATA
M6226_1.02 10 CAGGAAATAA
M6228_1.02 10 CTGACTCATC
M6234_1.02 13 GCAAAGCAAACAA
M6235_1.02 15 CTTAAGTAAACAACG
M6236_1.02 15 TCTGGCAAAACAAAC
M6237_1.02 9 AAACAAACA
M6238_1.02 11 AAAATAAACAT
M6239_1.02 11 AAAAGTAAACA
M6240_1.02 12 GGCCAATCAGAG
M6241_1.02 10 TAAATAAACA
M6242_1.02 13 TAAACAAAAACAA
M6244_1.02 13 AAAAACAAACAAC
M6245_1.02 16 AAAAAGTAAACAAACC
M6246_1.02 13 AGGTAAACAAACA
M6247_1.02 9 AATAAACAA
M6249_1.02 9 AAACAAATT
M6250_1.02 12 AAATAAACAATG
M6251_1.02 12 TTGTGTTTTTTT
M6256_1.02 9 ACAGATAAC
M6257_1.02 17 TAAGAGATAACTTAGAT
M6258_1.02 7 AAGATAA
M6259_1.02 14 CACATGCGGGTACT
M6262_1.02 11 TGCAGTGATTT
M6263_1.02 10 GCTGTGATTT
M6264_1.02 11 CTGGGTGGTCT
M6265_1.02 11 GTGGGTGGTCT
M6266_1.02 11 CTGGGTGGTCC
M6267_1.02 10 GTGGGGGGTC
M6268_1.02 12 AATGCCAGACGC
M6269_1.02 9 ACTCATTGA
M6270_1.02 20 AGGGACGCAGCTGCTCCCCA
M6271_1.02 13 GGGCTCGTGGCGG
M6272_1.02 16 AGGCCACGTGCCGGAT
M6273_1.02 17 GGGGGCACGTGGCATTA
M6274_1.02 9 GGGTTGCCC
M6275_1.02 12 GCGTACGTGCGG
M6276_1.02 16 GCGCTAGCGGACGTTA
M6277_1.02 13 CTGTTACGTAATC
M6278_1.02 12 TAGGGCTGCAAA
M6279_1.02 7 AAAATAC
M6280_1.02 15 AATAATCGCGAATAT
M6281_1.02 15 GGTTAATTATTAACC
M6282_1.02 14 GTTAATCATTAACC
M6285_1.02 14 TTTATTGATTTTTT
M6287_1.02 14 AGAATGTTCTAGAA
M6289_1.02 12 TCATAAATCATC
M6290_1.02 11 CCAATAAAACC
M6291_1.02 10 CATCCATCAA
M6292_1.02 10 CATTAATCAA
M6293_1.02 15 TCCAATCTATTGATT
M6295_1.02 10 CCATCCATCA
M6296_1.02 13 TGCATCAATCATT
M6297_1.02 10 CATTAATCAA
M6298_1.02 11 GCATTAATCAA
M6299_1.02 15 AAAGTAATAAATCAT
M6300_1.02 14 GGGCATCAATCAAA
M6301_1.02 10 AATTAAAGCA
M6302_1.02 11 TCCCTAATAAA
M6303_1.02 8 TTAATTGA
M6304_1.02 10 CCATTAAACT
M6306_1.02 12 TGTCAGGGGGCA
M6308_1.02 14 GGAAAGTGAAAGCA
M6309_1.02 17 GGAAAGCGAAACTGAAA
M6311_1.02 20 TAAAGGAAAGCCAAAAGTGA
M6312_1.02 10 GAAAGTGAAA
M6313_1.02 15 GAGAAAGTGAAACTG
M6314_1.02 12 GAAAGCGAAACT
M6315_1.02 7 GTTAATG
M6316_1.02 9 CCAGGTGCA
M6321_1.02 17 GGCGGGGAGGTGGGGGC
M6322_1.02 11 CAGGGTGTGGC
M6323_1.02 15 TGCCTGGGTGTGGCT
M6324_1.02 10 TGGGCGGGGC
M6325_1.02 8 GGGGGCGG
M6326_1.02 9 CAGGGGGTG
M6327_1.02 7 CTTTGAT
M6328_1.02 13 CACTTTTAATTAG
M6329_1.02 13 AAAATTAATTAAT
M6330_1.02 21 GTGCTGACCCCGCAGCCTTCG
M6331_1.02 9 TGCTGACGG
M6332_1.02 8 TTGCTGAC
M6333_1.02 7 CATGACT
M6336_1.02 17 GGGGGGGGGAGGGAGGG
M6337_1.02 11 GGGGCCGGAGG
M6338_1.02 17 TACAACAACCTGTTCTT
M6339_1.02 7 CTCCGGG
M6342_1.02 12 GCTAAAAATAGC
M6343_1.02 13 CGTAAAACTGTCA
M6344_1.02 13 TGACAGCTGTCAA
M6345_1.02 10 ATCACATGAC
M6346_1.02 19 CCACGGCGGTGTCACATGC
M6347_1.02 7 TAATTGT
M6348_1.02 17 AGTGCCGTGTGCAAAAC
M6349_1.02 10 TCAACCTGCA
M6350_1.02 7 CAGTTGG
M6352_1.02 8 CCACGTGG
M6353_1.02 7 GCAGCTG
M6354_1.02 9 GACAGCTGC
M6355_1.02 13 TGACAGCTGCTGC
M6356_1.02 9 GGTGGGGAA
M6357_1.02 8 TTTAATGG
M6358_1.02 12 CGGCAGATGGCC
M6359_1.02 7 AATGACT
M6360_1.02 12 CATGACTCAGCA
M6361_1.02 13 ATGGAAATTTCCA
M6363_1.02 9 AATTTTCCA
M6364_1.02 9 AGTTTTCCA
M6365_1.02 10 AAATTTTCCT
M6366_1.02 15 CATGGAGTTTTCCAC
M6368_1.02 14 ATGCATTACATAAC
M6370_1.02 11 GGAATCTCCCT
M6373_1.02 14 CAGCCAATCAGCGC
M6374_1.02 10 CTCAAGTGCT
M6375_1.02 12 AAACCACTTAAA
M6376_1.02 7 TCAAGTG
M6377_1.02 9 TTCAAGGAC
M6378_1.02 13 AATAAGTATATAA
M6379_1.02 11 AGTTAAGTGGA
M6380_1.02 9 CTAATTGGT
M6381_1.02 10 TCTCCCACGC
M6382_1.02 14 TCTGACCTACTTTT
M6383_1.02 19 CGTTGACCTTTGACCTTTA
M6384_1.02 14 AGGTCATTGACCCT
M6385_1.02 19 CTGAACTTTCTTGACCTCA
M6387_1.02 18 CTGAACTTTCCTGACCCC
M6389_1.02 13 CTGACCTCTGGCC
M6391_1.02 14 TGACTTTTGACTTT
M6392_1.02 18 TCAAGTGAACTTTGTCCT
M6393_1.02 9 GTGACCTTT
M6394_1.02 9 GTGACCTTT
M6395_1.02 10 CTGACCTTTG
M6396_1.02 10 TGGCCTTGAA
M6397_1.02 13 TGACCTTGAACTT
M6399_1.02 21 GTCTTGTTATTGATTTTTTTT
M6400_1.02 8 CTAATCCT
M6401_1.02 15 CTTTAATCCCTTAAC
M6402_1.02 9 TGTAACTGT
M6406_1.02 18 GTTCAGTCATGCGTGACA
M6410_1.02 11 TCAAGCGTGAA
M6411_1.02 14 GTCACTGAAGCGGG
M6412_1.02 15 CCCATCAATCAAATT
M6413_1.02 15 CCATCAATCAATTTA
M6415_1.02 9 CTAATTACC
M6416_1.02 11 TCTGTGGTTTG
M6417_1.02 13 ATATATTCATGAG
M6418_1.02 10 TTTAATCCCA
M6419_1.02 13 CATCAATCAAGCT
M6420_1.02 17 GGGGGCATCAGGAGGGG
M6422_1.02 10 CGGGGGGCCC
M6423_1.02 9 ATTTGCATA
M6425_1.02 14 TTTGCATTACAATG
M6426_1.02 10 CATAAATAAT
M6427_1.02 13 CAGCTCATTAATA
M6429_1.02 13 CATAATTTATGCA
M6430_1.02 7 TGACCTT
M6432_1.02 14 TGACCTTTGTCCTA
M6433_1.02 18 GTGACCTTTGACCTACTT
M6436_1.02 13 TACAGACTGTTCT
M6438_1.02 15 GAGTAATTAATATAG
M6439_1.02 7 TAATCTG
M6440_1.02 7 TTAATTG
M6441_1.02 21 GGACAGCTGTTCTGTTTCCTG
M6442_1.02 17 CCCTGCCCCCCCCTTCC
M6443_1.02 7 TGACCTC
M6445_1.02 11 GCCCTGACCTC
M6446_1.02 20 GTGACCTCTGGGTGACCCCC
M6448_1.02 12 GGGGGATTTCCC
M6449_1.02 12 TGGGGATTTCCC
M6451_1.02 12 GTTGCCAGGGAA
M6453_1.02 14 TTACCATGGCAACC
M6454_1.02 12 TGACCTAGTTTT
M6455_1.02 13 CTGACCTACTTTT
M6456_1.02 22 GGGGGGGGGGGTGGTTTGGGGT
M6457_1.02 10 TAACCACAGA
M6459_1.02 14 AACCACAAACCCCC
M6461_1.02 10 TGTGACCTCA
M6462_1.02 13 GTGACCTTTGACC
M6463_1.02 12 AGCCTGTCTGCC
M6464_1.02 11 GTGTCCGTCTG
M6465_1.02 10 GTGTCTGGCC
M6466_1.02 9 TGTCTGGCC
M6468_1.02 8 CCAGGTGG
M6469_1.02 7 CCAGGTG
M6470_1.02 7 TCTTTGT
M6471_1.02 8 CATTGTTC
M6472_1.02 7 CATTGTT
M6473_1.02 18 CAACAATCTTCATTGTCC
M6474_1.02 19 GGAAAAGAACAATGGGTTC
M6475_1.02 16 ATTTGCATAACAATGG
M6476_1.02 12 GAGAACAAAGCG
M6477_1.02 8 TAACAATA
M6478_1.02 11 AGAACAATGGG
M6482_1.02 20 GGGGGGGGGCGGGGCCGGGG
M6483_1.02 24 GGGGCCAGGGGGGGGGCGGGGCCG
M6485_1.02 12 AAAAAGAGGAAG
M6486_1.02 16 CGGCTGTTACCCTGGG
M6490_1.02 9 AAAACAAAA
M6491_1.02 12 TTTCCAGGAATT
M6492_1.02 13 TTTTCTGGGAATT
M6496_1.02 13 TTTCCCAGAAAAG
M6497_1.02 13 TTCCCAGGAATTT
M6498_1.02 9 TGACCTTGA
M6499_1.02 9 CGTGGGAAA
M6500_1.02 12 GACCATCTGTTC
M6503_1.02 25 GTCGCTTCTCACACCTCTGATGGCA
M6504_1.02 24 AGGTAGAGAATTAGGTGATAAAAA
M6505_1.02 8 AGGTGTGA
M6506_1.02 12 GCGCTTTGTTCT
M6507_1.02 14 CACATTCCTGCGCC
M6508_1.02 15 GATATTTCTGCTCTA
M6509_1.02 12 AAAAATAGCCCT
M6510_1.02 14 TGTTTATGTAAATG
M6513_1.02 11 GCCAGCTGCGG
M6514_1.02 16 GCCTGAACTGGCCAGA
M6515_1.02 14 AAATGGCGGGAAAC
M6516_1.02 11 GACCATCTGGT
M6517_1.02 10 GGTCATGTGG
M6518_1.02 9 GGTCACGTG
M6519_1.02 16 CAGGTGACACCTGACA
M6521_1.02 10 CTGACCTGAG
M6523_1.02 17 TGACCTGACCTGACCTC
M6525_1.02 11 CGCCAAGGAGC
M6527_1.02 10 CCCCAGGTGG
M6529_1.02 7 TCTCTGG
M6532_1.02 7 TGACCTC
M6534_1.02 11 TTAGCTAATTA
M6535_1.02 13 GCGGGGGCGGGGG
M6536_1.02 12 GACGTGTCATTA
M6537_1.02 11 GGGGATTGGCC
M6539_1.02 22 CGGAGAGGGGGAGGGGGGGGGC
M6540_1.02 15 CAATAGCGGTGGTGG
M6542_1.02 13 AGATGATAGAGCC
M6544_1.02 12 GGGGATTTCCCA
M6545_1.02 14 GGTAGGGAAACCCC
M6546_1.02 11 ATTAATAATTA
M6547_1.02 19 GGGGGCCCCAGGCCTCGGC
M6548_1.02 9 GGGGTGGTC
M6549_1.02 9 GGGGTGGTC
M6550_1.02 9 TGGGTGGTC
M6552_1.02 15 GGGGTGGGGGAGGGG
M6553_1.02 12 GAGGGGGGCGGA
M6554_1.02 14 TCCAGATGTTTCGG
M6555_1.02 9 CGATAATGA
M6556_1.02 24 GGGCAACAAATCCCTGCGCCCCGT
M6557_1.02 12 GGAAAAAGTCGG
M6558_1.02 15 GCACCCTTGGGTGCC
M6559_1.02 16 CCCACGGTTACTGCCG

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.194 C 0.306 G 0.306 T 0.194


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
M6546_1.02 ZFHX3 chr16 + 75433690 75433700 3.03e-07 0.148 attaatcatta
M6546_1.02 ZFHX3 chr16 - 75433692 75433702 1.6e-06 0.148 ATTAATGATTA
M6546_1.02 ZFHX3 chr7 + 135557594 135557604 1.84e-06 0.148 TTTAATAACTA
M6546_1.02 ZFHX3 chr15 - 64093633 64093643 2.69e-06 0.148 GTAATTAATTT
M6546_1.02 ZFHX3 chr17 - 4731175 4731185 3.27e-06 0.148 TTTATTTATTT
M6546_1.02 ZFHX3 chr21 + 33404433 33404443 3.27e-06 0.148 tttatttattt
M6546_1.02 ZFHX3 chr17 - 35567533 35567543 3.27e-06 0.148 TTTATTTATTT
M6546_1.02 ZFHX3 chr17 - 35567537 35567547 3.27e-06 0.148 TTTATTTATTT
M6546_1.02 ZFHX3 chr17 - 35567541 35567551 3.27e-06 0.148 TTTATTTATTT
M6546_1.02 ZFHX3 chr17 - 35567545 35567555 3.27e-06 0.148 TTTATTTATTT
M6546_1.02 ZFHX3 chr17 - 35567549 35567559 3.27e-06 0.148 TTTATTTATTT
M6546_1.02 ZFHX3 chr18 - 79246586 79246596 3.27e-06 0.148 TTTATTTATTT
M6546_1.02 ZFHX3 chr8 - 28712041 28712051 3.29e-06 0.148 GTAATTTATTA
M6546_1.02 ZFHX3 chr10 - 92591555 92591565 4.72e-06 0.163 ATGAATAACTT
M6546_1.02 ZFHX3 chr8 + 28712039 28712049 4.76e-06 0.163 attaataaatt
M6546_1.02 ZFHX3 chr16 + 70523705 70523715 5e-06 0.163 TTAAATAATTT
M6546_1.02 ZFHX3 chr7 - 151028766 151028776 5.14e-06 0.163 ATAAATAATTG
M6546_1.02 ZFHX3 chr19 + 48899741 48899751 5.81e-06 0.163 ATTAAAAATTT
M6546_1.02 ZFHX3 chr10 - 95908301 95908311 5.81e-06 0.163 ATTAATAATAT
M6546_1.02 ZFHX3 chr4 + 56301271 56301281 5.83e-06 0.163 TTTATTAACTT
M6546_1.02 ZFHX3 chr19 + 39997124 39997134 5.87e-06 0.163 ATTATTCACTT
M6546_1.02 ZFHX3 chr19 - 44141123 44141133 6.4e-06 0.164 ATTGATTACTA
M6546_1.02 ZFHX3 chr1 - 205122109 205122119 6.45e-06 0.164 ATAATTAATTG
M6546_1.02 ZFHX3 chr2 + 84459478 84459488 7.33e-06 0.171 ATTAATTATAA
M6546_1.02 ZFHX3 chr1 + 205122111 205122121 7.33e-06 0.171 ATTAATTATGA
M6546_1.02 ZFHX3 chr17 - 77331200 77331210 7.78e-06 0.173 ATTATTATTTT
M6546_1.02 ZFHX3 chr19 + 43934740 43934750 8.02e-06 0.173 ATTTTTTATTA
M6546_1.02 ZFHX3 chr8 - 28712037 28712047 9.22e-06 0.184 TTTATTAATTC
M6546_1.02 ZFHX3 chr17 - 77331197 77331207 9.69e-06 0.184 ATTATTTTTTA
M6546_1.02 ZFHX3 chr3 - 87226970 87226980 1.02e-05 0.184 TTGATTTATTA
M6546_1.02 ZFHX3 chr12 + 8915072 8915082 1.14e-05 0.184 CTTATTCATTT
M6546_1.02 ZFHX3 chr17 + 4731173 4731183 1.17e-05 0.184 ataaataaata
M6546_1.02 ZFHX3 chr17 + 35567531 35567541 1.17e-05 0.184 ataaataaata
M6546_1.02 ZFHX3 chr17 + 35567535 35567545 1.17e-05 0.184 ataaataaata
M6546_1.02 ZFHX3 chr17 + 35567539 35567549 1.17e-05 0.184 ataaataaata
M6546_1.02 ZFHX3 chr17 + 35567543 35567553 1.17e-05 0.184 ataaataaata
M6546_1.02 ZFHX3 chr17 + 35567547 35567557 1.17e-05 0.184 ataaataaata
M6546_1.02 ZFHX3 chr6 - 1391890 1391900 1.25e-05 0.193 GTCAATAATTT
M6546_1.02 ZFHX3 chr19 + 37654623 37654633 1.38e-05 0.2 ATGAATAAATA
M6546_1.02 ZFHX3 chr22 + 40856816 40856826 1.4e-05 0.2 ATTCTTAACTA
M6546_1.02 ZFHX3 chr19 - 44141126 44141136 1.44e-05 0.2 ATGATTGATTA
M6546_1.02 ZFHX3 chr10 + 103367546 103367556 1.54e-05 0.2 attattTAATT
M6546_1.02 ZFHX3 chr12 - 49235125 49235135 1.54e-05 0.2 ATTAATTTTTT
M6546_1.02 ZFHX3 chr1 - 205122106 205122116 1.54e-05 0.2 ATTAATTGTTT
M6546_1.02 ZFHX3 chr19 - 36139386 36139396 1.55e-05 0.2 TTTATTTACTT
M6546_1.02 ZFHX3 chr1 - 20633198 20633208 1.64e-05 0.2 TTAATTTATTT
M6546_1.02 ZFHX3 chr15 + 64093632 64093642 1.73e-05 0.2 AAAATTAATTA
M6546_1.02 ZFHX3 chr1 + 205122108 205122118 1.73e-05 0.2 ACAATTAATTA
M6546_1.02 ZFHX3 chr16 - 58630248 58630258 1.73e-05 0.2 ATAATTTATTG
M6546_1.02 ZFHX3 chr6 + 1391885 1391895 1.78e-05 0.2 ATGAAAAATTA
M6546_1.02 ZFHX3 chr19 + 38596811 38596821 1.78e-05 0.2 AGGAATAATTA
M6546_1.02 ZFHX3 chr20 + 49928638 49928648 1.78e-05 0.2 atgaatATTTA
M6546_1.02 ZFHX3 chr16 + 70523749 70523759 1.85e-05 0.203 TTTAAAAATTA
M6546_1.02 ZFHX3 chr1 - 151327515 151327525 2.03e-05 0.219 ATTATTTTTTT
M6546_1.02 ZFHX3 chr1 - 86914232 86914242 2.18e-05 0.231 GTTATTTAATA
M6546_1.02 ZFHX3 chr19 - 35870183 35870193 2.25e-05 0.234 GTTATAAATTT
M6546_1.02 ZFHX3 chr16 - 75433688 75433698 2.31e-05 0.234 ATGATTAATGA
M6546_1.02 ZFHX3 chr17 + 18153711 18153721 2.37e-05 0.234 TATATTAATTA
M6546_1.02 ZFHX3 chr19 + 37654566 37654576 2.37e-05 0.234 TCTATTAATTA
M6546_1.02 ZFHX3 chr19 + 43934825 43934835 2.59e-05 0.244 attactaattg
M6546_1.02 ZFHX3 chr7 + 42856764 42856774 2.63e-05 0.244 ATTGTTAATAA
M6546_1.02 ZFHX3 chr17 - 21099430 21099440 2.63e-05 0.244 ATTGTTAATCA
M6546_1.02 ZFHX3 chr21 - 33642071 33642081 2.64e-05 0.244 CTTAATTATTG
M6546_1.02 ZFHX3 chr6 + 1391892 1391902 2.7e-05 0.246 ATTATTGACTT
M6546_1.02 ZFHX3 chr16 + 4271056 4271066 2.82e-05 0.249 tttacttatta
M6546_1.02 ZFHX3 chr16 - 70523754 70523764 2.82e-05 0.249 ATATATAATTT
M6546_1.02 ZFHX3 chr10 + 17644008 17644018 2.86e-05 0.249 GTGACTAATTA
M6546_1.02 ZFHX3 chrX - 76148975 76148985 3e-05 0.256 ATCAATCATTT
M6546_1.02 ZFHX3 chr2 - 31234376 31234386 3.03e-05 0.256 ATAAATAATCT
M6546_1.02 ZFHX3 chr16 - 75433750 75433760 3.12e-05 0.26 ATGATTGATTT
M6546_1.02 ZFHX3 chr15 + 64093635 64093645 3.3e-05 0.27 ATTAATTACCA
M6546_1.02 ZFHX3 chr2 - 177148650 177148660 3.41e-05 0.27 AATATTAACTT
M6546_1.02 ZFHX3 chr18 + 62714861 62714871 3.56e-05 0.27 TTTAATTAGTA
M6546_1.02 ZFHX3 chr17 - 18153713 18153723 3.56e-05 0.27 TTTAATTAATA
M6546_1.02 ZFHX3 chr12 + 49235127 49235137 3.59e-05 0.27 aaaaTTAATTT
M6546_1.02 ZFHX3 chr2 - 84459476 84459486 3.59e-05 0.27 ATAATTAATGT
M6546_1.02 ZFHX3 chr6 - 41734073 41734083 3.6e-05 0.27 GTTAATTACTG
M6546_1.02 ZFHX3 chr19 + 43934734 43934744 3.65e-05 0.27 ATGAATATTTT
M6546_1.02 ZFHX3 chr16 + 75433694 75433704 3.65e-05 0.27 atcattaattc
M6546_1.02 ZFHX3 chr16 + 30571829 30571839 3.82e-05 0.274 TTTATTCACTT
M6546_1.02 ZFHX3 chr16 - 75565724 75565734 3.85e-05 0.274 GTGAATAAATA
M6546_1.02 ZFHX3 chr6 - 29649723 29649733 3.96e-05 0.274 TTTCATTATTA
M6546_1.02 ZFHX3 chr17 - 77331210 77331220 3.96e-05 0.274 TTTTATTATTA
M6546_1.02 ZFHX3 chr2 - 70087235 70087245 3.99e-05 0.274 TTTATTAACTC
M6546_1.02 ZFHX3 chr20 + 49928703 49928713 4.05e-05 0.274 ttttttaattt
M6546_1.02 ZFHX3 chr19 - 38243931 38243941 4.05e-05 0.274 TTTTTTAATTT
M6546_1.02 ZFHX3 chr19 + 39996775 39996785 4.11e-05 0.276 attatgtacta
M6546_1.02 ZFHX3 chr19 + 17511183 17511193 4.33e-05 0.284 gttaatttttt
M6546_1.02 ZFHX3 chr16 - 87766286 87766296 4.33e-05 0.284 GTTAATTTTTT
M6546_1.02 ZFHX3 chr4 - 24584413 24584423 4.42e-05 0.285 CTTAATAACTG
M6546_1.02 ZFHX3 chr19 - 36054665 36054675 4.56e-05 0.285 TTTAATTTTTA
M6546_1.02 ZFHX3 chrX + 76148728 76148738 4.63e-05 0.285 aagattaattt
M6546_1.02 ZFHX3 chr7 + 116211291 116211301 4.65e-05 0.285 GTCATTCATTA
M6546_1.02 ZFHX3 chr19 - 32691388 32691398 4.69e-05 0.285 TTTATAAATTT
M6546_1.02 ZFHX3 chr19 - 50804546 50804556 4.69e-05 0.285 TTTATTACTTT
M6546_1.02 ZFHX3 chr1 - 151327518 151327528 4.69e-05 0.285 TTTATTATTTT
M6546_1.02 ZFHX3 chr19 - 43934732 43934742 4.74e-05 0.285 AATATTCATTT
M6546_1.02 ZFHX3 chr3 - 4475420 4475430 4.89e-05 0.286 GAGAATAATTA
M6546_1.02 ZFHX3 chr19 - 39997122 39997132 4.89e-05 0.286 GTGAATAATAA
M6546_1.02 ZFHX3 chr5 + 134466757 134466767 5.01e-05 0.286 ATTGATCATTC
M6546_1.02 ZFHX3 chr20 - 49928574 49928584 5.01e-05 0.286 GTGAATTATTC
M6546_1.02 ZFHX3 chr19 + 58386976 58386986 5.01e-05 0.286 TTTCTTTATTA
M6546_1.02 ZFHX3 chr1 - 178542337 178542347 5.11e-05 0.289 GTTAAACATTA
M6546_1.02 ZFHX3 chr17 - 29591711 29591721 5.29e-05 0.297 CTTATTAAATT
M6546_1.02 ZFHX3 chr19 - 37654621 37654631 5.44e-05 0.302 TTTATTCATTG
M6546_1.02 ZFHX3 chr12 + 49235234 49235244 5.57e-05 0.304 GTTGAAAATTA
M6546_1.02 ZFHX3 chr17 - 4731171 4731181 5.63e-05 0.304 TTTATTTATGA
M6546_1.02 ZFHX3 chr17 - 80148058 80148068 5.63e-05 0.304 TTTATTTATAA
M6546_1.02 ZFHX3 chr20 + 49928572 49928582 5.71e-05 0.305 CTGAATAAttc
M6546_1.02 ZFHX3 chr10 + 92591557 92591567 5.96e-05 0.312 gttattcataa
M6546_1.02 ZFHX3 chr16 - 70523710 70523720 6.04e-05 0.312 ATTACAAATTA
M6546_1.02 ZFHX3 chr16 - 75433699 75433709 6.04e-05 0.312 ATTACGAATTA
M6546_1.02 ZFHX3 chr1 + 154955827 154955837 6.1e-05 0.312 CTAGTTAATTT
M6546_1.02 ZFHX3 chr19 - 35748516 35748526 6.1e-05 0.312 ATTAGTTATTG
M6546_1.02 ZFHX3 chr16 + 70523657 70523667 6.21e-05 0.313 CGTATTAATTT
M6546_1.02 ZFHX3 chr9 - 104094265 104094275 6.29e-05 0.313 ATTGCTTATTT
M6546_1.02 ZFHX3 chr8 + 61139409 61139419 6.4e-05 0.313 GTTGTCAATTA
M6546_1.02 ZFHX3 chr7 + 116211294 116211304 6.4e-05 0.313 ATTCATTACTT
M6546_1.02 ZFHX3 chr19 - 33041501 33041511 6.4e-05 0.313 GTTGTTAATGA
M6546_1.02 ZFHX3 chr1 - 230104934 230104944 6.48e-05 0.315 CTGATTCATTT
M6546_1.02 ZFHX3 chr19 + 48400485 48400495 6.8e-05 0.324 CTTATTTCTTA
M6546_1.02 ZFHX3 chr19 - 33041498 33041508 6.9e-05 0.324 GTTAATGATTC
M6546_1.02 ZFHX3 chr1 + 65255081 65255091 6.94e-05 0.324 ATAAACTATTT
M6546_1.02 ZFHX3 chr16 - 70523707 70523717 6.94e-05 0.324 ACAAATTATTT
M6546_1.02 ZFHX3 chr6 - 150142431 150142441 6.94e-05 0.324 AGAAATTATTT
M6546_1.02 ZFHX3 chr16 - 4271058 4271068 7.34e-05 0.334 AATAATAAGTA
M6546_1.02 ZFHX3 chr17 - 18153709 18153719 7.34e-05 0.334 ATTAATATATA
M6546_1.02 ZFHX3 chr12 + 76630641 76630651 7.47e-05 0.334 atattttattt
M6546_1.02 ZFHX3 chr6 + 150142429 150142439 7.53e-05 0.334 GGAAATAATTT
M6546_1.02 ZFHX3 chr20 - 24993166 24993176 7.54e-05 0.334 ATGCATTATTT
M6546_1.02 ZFHX3 chr1 - 151327519 151327529 7.64e-05 0.334 TTTTATTATTT
M6546_1.02 ZFHX3 chr17 + 18153715 18153725 7.71e-05 0.334 TTAATTAAATA
M6546_1.02 ZFHX3 chr17 - 80147899 80147909 7.71e-05 0.334 TTAAAAAATTA
M6546_1.02 ZFHX3 chr1 - 156082668 156082678 7.71e-05 0.334 TTAAAAAATTA
M6546_1.02 ZFHX3 chr13 + 114282246 114282256 7.88e-05 0.334 TTGAATAAATA
M6546_1.02 ZFHX3 chr19 - 43670481 43670491 7.88e-05 0.334 ATTCATATTTA
M6546_1.02 ZFHX3 chr9 - 128322045 128322055 7.94e-05 0.334 TTTCTTAACTA
M6546_1.02 ZFHX3 chr15 - 76327856 76327866 7.98e-05 0.334 GTCATTTACTA
M6546_1.02 ZFHX3 chr12 - 108561461 108561471 7.98e-05 0.334 ATTCTTCACTA
M6546_1.02 ZFHX3 chr17 - 18153716 18153726 8.18e-05 0.334 TTATTTAATTA
M6546_1.02 ZFHX3 chr2 + 84459475 84459485 8.34e-05 0.334 AACATTAATTA
M6546_1.02 ZFHX3 chr6 + 133952653 133952663 8.34e-05 0.334 ATCATAAatta
M6546_1.02 ZFHX3 chr16 - 70523662 70523672 8.49e-05 0.334 ATAGAAAATTA
M6546_1.02 ZFHX3 chr19 + 48899728 48899738 8.64e-05 0.334 TTTAAATATTT
M6546_1.02 ZFHX3 chr17 - 18153717 18153727 8.64e-05 0.334 TTTATTTAATT
M6546_1.02 ZFHX3 chr19 - 48899715 48899725 8.64e-05 0.334 TTTAATTCTTT
M6546_1.02 ZFHX3 chr19 - 58475881 58475891 8.64e-05 0.334 GTTATAAACTT
M6546_1.02 ZFHX3 chr17 + 77331202 77331212 9.03e-05 0.334 aaTAATAATAA
M6546_1.02 ZFHX3 chr17 + 77331205 77331215 9.03e-05 0.334 AATAATAATAA
M6546_1.02 ZFHX3 chr17 + 77331208 77331218 9.03e-05 0.334 AATAATAATAA
M6546_1.02 ZFHX3 chr7 + 93232200 93232210 9.03e-05 0.334 AGTAATATTTA
M6546_1.02 ZFHX3 chr1 + 235328699 235328709 9.03e-05 0.334 ATTATAAAATA
M6546_1.02 ZFHX3 chr16 - 4271061 4271071 9.03e-05 0.334 AGTAATAATAA
M6546_1.02 ZFHX3 chr1 - 151763762 151763772 9.03e-05 0.334 ATTAAAAGTTA
M6546_1.02 ZFHX3 chr10 + 69451129 69451139 9.15e-05 0.334 ATTAATTCTTG
M6546_1.02 ZFHX3 chr12 + 110404040 110404050 9.15e-05 0.334 ATTAAATATTC
M6546_1.02 ZFHX3 chr7 - 42856765 42856775 9.21e-05 0.334 TTTATTAACAA
M6546_1.02 ZFHX3 chr19 + 3607152 3607162 9.28e-05 0.334 ATTATTCACCA
M6546_1.02 ZFHX3 chr19 + 33041743 33041753 9.28e-05 0.334 attattcccta
M6546_1.02 ZFHX3 chr7 + 151028764 151028774 9.34e-05 0.334 CTCAATTATTT
M6546_1.02 ZFHX3 chr12 + 108561463 108561473 9.43e-05 0.334 GTGAAGAATTT
M6546_1.02 ZFHX3 chr19 + 44212162 44212172 9.44e-05 0.334 TTTTTTTATTT
M6546_1.02 ZFHX3 chr1 + 150234297 150234307 9.44e-05 0.334 TTTTTTTATTT
M6546_1.02 ZFHX3 chr17 - 18153721 18153731 9.44e-05 0.334 TTTTTTTATTT
M6546_1.02 ZFHX3 chr19 - 36139390 36139400 9.44e-05 0.334 TTTCTTTATTT
M6546_1.02 ZFHX3 chr8 + 28712040 28712050 9.59e-05 0.335 ttaataaatta
M6546_1.02 ZFHX3 chr2 - 70087239 70087249 9.59e-05 0.335 GTATTTTATTA
M6546_1.02 ZFHX3 chr11 + 118401487 118401497 9.77e-05 0.337 TTGAAAAATTA
M6546_1.02 ZFHX3 chr10 - 73785483 73785493 9.77e-05 0.337 ATTTTTATTTA
M6546_1.02 ZFHX3 chr5 - 132496541 132496551 9.94e-05 0.341 TTTAGTAACTT

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_26 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif M6546_1.02 /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_26 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MotifData/motif_databases/CIS-BP/Homo_sapiens.meme sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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