Database and Motifs High-scoring Motif Occurences Debugging Information



FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]


DATABASE AND MOTIFS

DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 600 sequences, 300000 residues

MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
KTKTKTGTKTGTGTGTGTGTKT 22 GTGTGTGTGTGTGTGTGTGTGT
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC 43 CAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC
CAGGMTGGTCTCGAWCTCCT 20 CAGGCTGGTCTCGAACTCCT
WWKARWRAVWKHRDDWAWGTRW 22 AAGAAAAAAAGAAAAAAAGTAT
CAACAYGGTGAAACCCCGTCTCTACTAAAAA 31 CAACATGGTGAAACCCCGTCTCTACTAAAAA
CCRGGCGCGGTGGCTCACGCCT 22 CCGGGCGCGGTGGCTCACGCCT
YBHYTTYCCHCHNYYYSTMYTY 22 TTCCTTCCCTCTCTCCCTCCTC
GTGTGTGYGTGTGTGT 16 GTGTGTGCGTGTGTGT
CCAGCACTTTGGGAGGCCGAVGHGGGBGGAT 31 CCAGCACTTTGGGAGGCCGAGGTGGGTGGAT
HAAAABAAAAAH 12 AAAAATAAAAAT

Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.194 C 0.306 G 0.306 T 0.194


SECTION I: HIGH-SCORING MOTIF OCCURENCES

Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr5 + 149729824 149729866 2.71e-25 1.15e-19 caggtgatccacccgcctcggcctcccaaagtgctgggattac
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr17 - 16387145 16387187 6.28e-25 1.15e-19 CTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr12 + 49235048 49235090 6.28e-25 1.15e-19 ctcgtgatccgcccgcctcggcctcccaaagtgctgggattac
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr1 - 233329395 233329437 1.45e-24 2e-19 CAGGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr10 - 102169718 102169760 1.7e-23 1.74e-18 CTCGTGATCCGCCCGCCTCCGCCTCCCAAAGTGCTGGGATTAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 + 39073498 39073540 1.9e-23 1.74e-18 caggcgatccacccgccttggcctcccaaagtgctgggattac
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr16 - 71485191 71485233 2.99e-23 2.34e-18 CAGGTGATCTGCCCGCCTTGGCCTCCGAAAGTGCTGGGATTAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr12 + 49842311 49842353 3.67e-23 2.52e-18 cttgtgatccacccgcctcggcctccgaaagtgctgggattac
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 + 40404036 40404078 1.19e-22 7.26e-18 caagggatcctcccgcctcggcctcccaaagtgctgggattac
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr17 + 80147983 80148025 4.29e-22 2.2e-17 caggtgatccgcctgccttggcctcccaaagtgctgggattac
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr17 - 18153438 18153480 4.41e-22 2.2e-17 CAGGTGGTCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr16 + 87382868 87382910 4.98e-22 2.28e-17 caggtgacccgcccgcctcggcctccctaagtgctgagattac
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 + 17511253 17511295 8.87e-22 3.75e-17 ctcgtgatccgcccgcctcggcctcccaaagtgttgggattac
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr1 + 228130903 228130945 8.95e-21 3.51e-16 ctcgtgattcgcccgcctcagcctcccgaagtgctggaattac
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr3 - 9986957 9986999 4.63e-20 1.7e-15 CTCGTGATCCCCCCACCTTGGCCTCCCAAAGTGCTGGGATTCC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr22 - 39039716 39039758 6.22e-20 2.14e-15 GAGGAGATCCGCCCGCCTTGGCGTACCAAAGTGCCGGGATTAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr16 + 75565613 75565655 8.15e-20 2.63e-15 caggtgatccacccgcgtcggcctcccaaagtgttgggattac
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr12 - 76630751 76630793 5.41e-19 1.65e-14 ATCGTGTTCTGCCCACCTCGGCCTCCCAAAGTGCTGGAATTAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 + 37317406 37317448 6.61e-19 1.91e-14 ctcgtgatccgcccgcatccgcctcccaaagtgttgggattac
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr17 - 4730920 4730962 1.34e-18 3.68e-14 CAAGCGATCCACCCTCTTCGGCCTCCCAAAGTGCTGGGATTAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 + 44259730 44259772 7.45e-18 1.95e-13 tagtgatccacccccccttggcctcccaaagtgctgggattac
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 + 44212120 44212162 1.34e-17 3.34e-13 ctcgtgatccgcccgcctcggcctcccaaagtgctgggaGTCT
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 - 33041924 33041966 1.45e-16 3.47e-12 CAAGTGATCCTCCTGCCTCAGCCTCCCAGAGTGCTGGGATTTC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr20 + 49928455 49928497 4.27e-16 9.77e-12 caagtgatacaccggcctctgcctcccaaagtgttgggattac
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr16 - 71485326 71485368 4.21e-13 9.26e-09 CAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr1 - 233329530 233329572 9.81e-13 2e-08 CAAGTGATTCTCATGCCTCCGCCTCCCGAGTAGCTGGGATTAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr9 + 128321877 128321919 9.84e-13 2e-08 caagcgatcctcctgcctcagcctccagagtagctgggattac
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr17 - 16387279 16387321 2.1e-12 4.13e-08 CACGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr17 - 18153574 18153616 2.39e-12 4.54e-08 CAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr16 + 75565478 75565520 3.03e-12 5.55e-08 caaacgattctcctgcctcagcctcccgaggagctgggactac
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr16 - 87766165 87766207 3.48e-12 6.16e-08 CAAGCGATCCGCCCGCCAAGGCCTCCCAAAGCTCCAGGGTTAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr1 + 204507702 204507744 5.9e-12 1.01e-07 caagcaattctcctgcctcagccttccgagtagctgggattac
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 + 44259596 44259638 1.24e-11 2.07e-07 caagcaattctcctgcctcagcctctggagtagctgggattac
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr10 - 103367583 103367625 2.55e-11 4.12e-07 TAAGCGATTCTCCTGCCTCAGCCTCCCCAGTAGCTAGGATTAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 - 38243758 38243800 3.67e-11 5.76e-07 CAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr12 - 56116015 56116057 4.56e-11 6.96e-07 CAAGCGATTCTCCCGCCTCAGCTTCCCGAGCAGCTGGGACAAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr18 + 35240553 35240595 5.88e-11 8.73e-07 cacgccattctcctgcctcagcctcccgagtagctggaactac
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr17 - 48830658 48830700 9.21e-11 1.3e-06 CAGGTGATCCTCCCACTTCAGCCTCCTGAGTAGCTGGGACAAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr1 + 228130768 228130810 9.21e-11 1.3e-06 cacgccattctcctgcctcagccttccaagcagctgggatcac
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr8 - 30082214 30082256 1.36e-10 1.87e-06 CAAGAGATTCTCCTGCCTCGGCCTCACCGGTAGCTGAGATTAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 - 48899789 48899831 1.67e-10 2.24e-06 CAAGCAATCCTCCCGCGTCAGCCTCCCAAGTAGATGGGACCAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr3 - 9987090 9987132 2.74e-10 3.58e-06 CACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGCGACTAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr10 - 102169854 102169896 2.82e-10 3.6e-06 CACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTAT
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr16 + 87382730 87382772 3.36e-10 4.19e-06 caagccattcttctgcctcaccctcccgagtagctgggattac
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr12 + 49234915 49234957 3.46e-10 4.22e-06 caagcgattctcctgcctcagactcccgagtatttgggattac
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr16 - 87766319 87766361 4.57e-10 5.45e-06 CAAGCGATCTTCCCGCCTCACCTTCCCGAGGAGCTAGGACCAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr22 - 39039927 39039969 1.08e-09 1.26e-05 CAAAAGATTCTCCTGCCTCAGCCTCCCATGTAACTGCGATTAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 + 50167139 50167181 4.93e-09 5.65e-05 ttcaagtgatctgccaccttgcctcccaaagtgctgggattac
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr17 - 35567587 35567629 6.96e-09 7.8e-05 CAGGCTATTCTCCTGCTTCGGCCTTCTGAGCAGCTTGGATTAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr12 - 76630890 76630932 2.57e-08 0.000282 CACGCCATTCTCCTGCCTCAGCCCCCTGAGTAGCTGGGACCAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr17 - 4731053 4731095 2.72e-08 0.000293 CAAGCGATTCTCCTGCTTCAGCTTCCCGGGTGCCTGGGATTAT
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr12 + 49842178 49842220 8.78e-08 0.000928 cacgccattctcctgcctcagcctccggagtagctggactaca
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 + 39073363 39073405 1.73e-07 0.00179 caagagattctcttgtctcagcttcctgagtagctgggaacac
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr1 - 224330026 224330068 4.7e-07 0.00478 TGTGTATTCTGCACCGCTTGGCCTCGCCAAGGGCCCCGATCGC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr18 + 35240687 35240729 4.98e-07 0.00498 ctcgtgatccgcccgcctcggccaccGCGCCCGGCCGAAAATC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr1 + 244834206 244834248 1.12e-06 0.011 ctcgtgatccgcccgcctcagcccccaaagtgttgggattaca
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr3 + 9986954 9986996 2.86e-06 0.0275 cctggaatcccagcactttgggaggccaaggtggggggatcac
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr17 + 80147833 80147875 4.2e-06 0.0398 tcattgtagcctccgcctcagcctctggagtagctgggacctc
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr10 + 75210562 75210604 4.42e-06 0.0411 CCGCCGTTCCCCGCCCCCTCGCCTCTGAGGCTGCCCGGATAGC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr6 - 77369126 77369168 4.84e-06 0.0443 CTAGGGCTCCACCCCCATGGACCTAGCTGAGGACAGGCACTCC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 - 36054822 36054864 5.69e-06 0.051 TATTGGACGCGACGGGCCCGGCCTAGCCAATCGCAGGGATGCC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr1 + 244834205 244834247 5.76e-06 0.051 cctcgtgatccgcccgcctcagcccccaaagtgttgggattac
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chrX - 76149043 76149085 6.44e-06 0.0562 TTAAGGACCCGCCCATGACAGCCTCAGGAGGTCCTGACGACAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr12 + 49234883 49234925 6.67e-06 0.0573 ctcggctcactgcaacctccgcctcccagattcaagcgattct
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr11 + 130003699 130003741 8.51e-06 0.072 TTGGAGAGATACCCAGCTCCAACTACCCACTGGCAGGCAATAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr6 - 37257973 37258015 1.08e-05 0.0902 GGTTTGGTCCAATCCCCTATCCCTCTCAGCGTCCTGGGCTCAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr17 - 42964753 42964795 1.12e-05 0.092 TAACCATGCCAGTCCCGTCCCCGCCTCTATGCGCTGGGATTCC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr6 + 1392073 1392115 1.19e-05 0.0959 CAAGCTACTCTCTCACACTGGCCTCCCACAGCAATGAGACAGT
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 - 44259917 44259959 1.3e-05 0.102 CAGAGGTTCCGCGCTGACTCACCTCCCAGAGGGGATAGATGAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr17 + 59619549 59619591 1.3e-05 0.102 CAGCCGACCCTTCCCCATCAGTATCACGTGCACCTGGAAGTAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr1 + 85048529 85048571 1.51e-05 0.117 CCGCGCATCCTCCCGCCCCCGCCGCTTTAACTCGTGACCCTAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr9 - 132670283 132670325 1.65e-05 0.126 GAGCTACCCAGACAGGCTTTAGTTCCTAAAGTGCTGAGGAAAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr1 + 233329392 233329434 1.7e-05 0.128 cctgtaatcccagcactttgggaggccgaggtgggcggatcac
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 + 35718763 35718805 1.78e-05 0.132 CCTGTGGGCCGCCCCGCCGGGCCTCGCAACCTCCTGGTTTCTC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr1 - 228109550 228109592 1.99e-05 0.146 CTCAGCACTCCCCCACTCCGTCCTCCCTCAGACCCGCGGGTCC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr16 + 72664860 72664902 2.38e-05 0.172 TTTTCGTCGCTCTCCCCTCGCGGTCGCTCACCCCTGAGATCCC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr1 - 45490945 45490987 2.54e-05 0.181 TAGGGGCTCCCACCGCCTCCGCAGGCTAAGGAGCCGCTGCCAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 - 48400344 48400386 2.64e-05 0.186 GGAGAGGACTACGAGCCTCTGCATACAACAGTGATGCAGTCAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 + 37317283 37317325 2.72e-05 0.189 cacgccattctcctgcctcagcctctccgagtagctgggacta
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr14 + 24036860 24036902 2.88e-05 0.198 GTGAAGTCCCATCGATCTAGTCCCCCCAGTGTTCTGGGCTGCC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 - 43934941 43934983 2.95e-05 0.198 GGCCCGACCCGCCTTCCCCCACCTCCCACAGCTCTGTAGCTTC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 - 43934941 43934983 2.95e-05 0.198 GGCCCGACCCGCCTTCCCCCACCTCCCACAGCTCTGTAGCTTC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr2 - 42361508 42361550 3.04e-05 0.201 TCCTAAAGCATGCTCCACCTGACTCCGACACTGCCGGGCTTAG
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 - 37317409 37317451 3.22e-05 0.208 CTTGTAATCCCAACACTTTGGGAGGCGGATGCGGGCGGATCAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr12 - 111842224 111842266 3.22e-05 0.208 CTGCTCCCGCCGCCGCCTCAGCGCCACACATCGCCGGGACACC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr5 + 56950735 56950777 3.28e-05 0.209 GAGTCGAGCGCTCCTCCGCAGCTGCCAAAAGTGCAAGACGTAG
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 - 35758239 35758281 3.31e-05 0.209 CTCGCCGTTGGTCCTCCCCAGCCTCCTGTAGTCCCTGGAAGAG
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr1 + 153923505 153923547 3.41e-05 0.213 TTGGGGTGTGGCCTGTCTCCGTCTGCCAAAGGCTTTGAGCTTC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr1 + 109090979 109091021 3.48e-05 0.213 TCCCAGCCCGGCCCCCCTTGGCCTCTCGACGCCCCTAACTTCT
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr6 - 84227998 84228040 3.5e-05 0.213 CTCTTCAAAATTGCCCCTTGGAAAAACAGAGCGCTCGAATGAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr1 - 167220232 167220274 3.53e-05 0.213 TAGGTAATTTCCGGCCCTCTGGGCAGGTAGGGGCGGAAACGAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr5 + 149729868 149729910 3.7e-05 0.221 ggcgtgagccactgcgcccggccTTCGAACGAGGTCCTATTCc
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr1 + 45490942 45490984 3.81e-05 0.225 TTGGTGGCAGCGGCTCCTTAGCCTGCGGAGGCGGTGGGAGCCC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 - 37469679 37469721 4.08e-05 0.239 CAAAGAAGCCGCGGGTATCGGCCCAACAAGGTGCAGCGAACAG
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr16 - 87382795 87382837 4.15e-05 0.24 GATGGTAAAACCCCGTCTCTACTTACAAAAATACAAAAATTAG
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr2 - 27890432 27890474 4.22e-05 0.241 CAGGTGGGCGACCCGCGTAGGCGTCTGAAAGGCCCGCGTCGTT
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr6 + 28923764 28923806 4.27e-05 0.242 CCCGTATCCCAGACGCGCCCGCGCACCGAAGGCTTGGAGTGGC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 + 17511290 17511332 4.37e-05 0.245 gattacaggcgtcagccaccgcgcccggcGGTGCAGGAATTTT
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr7 + 151028565 151028607 4.41e-05 0.245 CAGGCTGCTACCGCCCCTCCGCTTCCAGACATTCTCAGCTGTC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr1 - 243255763 243255805 4.46e-05 0.245 GTTTAGTCCCGCCTCCATCCCACTCTTCAGCTGCCTGGACCAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 + 29845717 29845759 5.36e-05 0.292 ttctcgtttcaccctgggtctcctcctcagggagtggcatcac
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr2 + 70301513 70301555 5.56e-05 0.3 GGCATGACCTGGCCAACGGGGAGGCCGGAAGTCCTCGCCTTTC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr7 + 93231979 93232021 5.84e-05 0.311 CTCTCGTTCTCCCACCCCGCCCCTCTAGACCAGGTGAGGTTTC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr7 - 135510412 135510454 6.7e-05 0.353 TTAGCCTCGCCCCAGTCTTGGGGTAGCACATTTCCGCAAACAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 - 44113327 44113369 6.74e-05 0.353 CCTGAGACAAACTGACCGCGACGACCCCGAGCGTCTGGACTAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr8 - 61139607 61139649 6.9e-05 0.358 CCGGGATGTCGCCTTCCACCTGGCCCCAGCAGGCTGGAAATAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr16 + 58501405 58501447 7.24e-05 0.371 CCGCAGTGCTTCCCGCCTGCGCCTACCTGGAGGCGGGGCCGGC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr4 - 24470130 24470172 7.5e-05 0.371 CGGGCATCCTCGGCAGCGCCGCGCCCCCCAGTCCTGGAGTCAG
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 + 39341630 39341672 7.55e-05 0.371 ctcGACCCTCCATCCCGACTGCCTCTCTAAGTGCCTGTAACAA
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 - 3626995 3627037 7.65e-05 0.371 GTGGGGACCCGCCTAGGGCTGCCTCCAGCACTGCCTGAAAGGA
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 + 58409620 58409662 7.84e-05 0.371 GAGTGGAGCCTGTGCCCTTGGCCCTGCACATAGATGGCATCAG
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr17 + 4730917 4730959 7.9e-05 0.371 cctgtaatcccagcactttgggaggccgaagagggtggatcgc
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr17 + 16387142 16387184 7.9e-05 0.371 cctgtaatcccagcactttgggaggccgaggcgggcggatcac
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 - 17511256 17511298 7.9e-05 0.371 CCTGTAATCCCAACACTTTGGGAGGCCGAGGCGGGCGGATCAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr12 - 49235051 49235093 7.9e-05 0.371 CCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr16 - 75565616 75565658 7.9e-05 0.371 CCTGTAATCCCAACACTTTGGGAGGCCGACGCGGGTGGATCAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr5 - 149729827 149729869 7.9e-05 0.371 CCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 - 39445649 39445691 8.05e-05 0.375 CTGTTCTCTACACCTCCCCGGCGCCCGGAACTGCCACCTCTGC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr1 + 84298595 84298637 8.19e-05 0.378 GTGGGAAGGCGCCCGCCCTCTCCTCTCTCCAGGATGAAAGGAA
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr14 + 49599041 49599083 8.34e-05 0.38 GAGGTGATCAGCCGGCACTTGCCCGCCTTGGGGCTTAGGAACC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 - 37467168 37467210 8.37e-05 0.38 CGAGACTTGTGGCGCTCTCAGCCACCGACAGCGCCGGCCTCAG
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr19 + 35612971 35613013 8.6e-05 0.387 GACTCGACTCCCCCCAATTCCCCATCGAGAGTGACCCGACTTA
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr3 - 19947726 19947768 8.67e-05 0.387 AAAGGGTGACACCCGTCGCTCCCTCAGTCAGTCCCCAAATCCC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr22 - 39039748 39039790 8.78e-05 0.389 ATGTTGGTCAGCTGATCTCGAACTCCCGATCTGAGGAGATCCG
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr14 - 24036634 24036676 9.27e-05 0.406 CCTGTTTCCAGGCAGCCAGGGCCTCAGAAACTCCGGCACCAAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr2 + 74391881 74391923 9.39e-05 0.406 CTCGTGGGCTGCCCGACTCGCCGCCAGACCCTTCCAGGACCGC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr17 + 28854851 28854893 9.43e-05 0.406 CACATTTTCCCCTTTCCTTAGCCTCCACCAGTCTCCAGAGCAA
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr20 - 35092931 35092973 9.46e-05 0.406 CTCTTTTCCCACCTACCCCGCTGCCGCGCAGGACTACAATTCC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr10 - 116609718 116609760 9.65e-05 0.411 CCCGCCTGGGCCCCGCCTCCGCGCCGCTCTGTGCTTAGGTGGC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr11 + 119018571 119018613 9.79e-05 0.414 AAAGCAATCCACCAGGTCTCGGCAGCTAACTTTCCGGCACTAC
CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC MEME-2 chr8 - 30082246 30082288 9.98e-05 0.419 CTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGAGATTCT

DEBUGGING INFORMATION

Command line:

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_2 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif CWSGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa

Settings:

output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_2 MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background alphabet = DNA max stored scores = 100000
allow clobber = true compute q-values = true parse genomic coord. = true
text only = false scan both strands = true max strand = false
threshold type = p-value output theshold = 0.0001 pseudocount = 0.1
alpha = 1 verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.


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