# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Sun Mar 18 18:28:13 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF335.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Sun Mar 18 18:28:13 PDT 2018)
#        host: surya
#        when: Sun Mar 18 19:17:47 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.215 C 0.287 G 0.286 T 0.212


MOTIF CAGGYR DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CAGGYR     YRCCTG        220        127   2.0e-009   6.6e-005
#           CAGGCG     CGCCTG         83         38   1.0e-005   3.4e-001
#           CAGGTA     TACCTG         32         12   1.5e-003   5.1e+001
#           CAGGCA     TGCCTG         85         52   1.8e-003   5.9e+001
#           CAGGTG     CACCTG         63         37   4.4e-003   1.4e+002

letter-probability matrix: alength= 4 w= 6 nsites= 292 E= 6.6e-005
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.654110 0.000000 0.345890
0.455479 0.000000 0.544521 0.000000


MOTIF GGRAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST       GGRAA      TTYCC        308        225   9.1e-007   3.0e-002
#            GGAAA      TTTCC        199        133   1.3e-005   4.2e-001
#            GGGAA      TTCCC        212        155   2.2e-004   7.2e+000

letter-probability matrix: alength= 4 w= 5 nsites= 437 E= 3.0e-002
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.469108 0.000000 0.530892 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: E-value threshold exceeded
#    Running time: 10.67 seconds