# DREME 4.12.0
#     command: dreme -v 1 -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF324.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/dreme_out -png -dna -p /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF324.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered -n /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF324.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled
#   positives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF324.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-centered (Thu May 10 17:13:11 PDT 2018)
#   negatives: 600 from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF324.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/seqs-shuffled (Thu May 10 17:13:11 PDT 2018)
#        host: surya
#        when: Thu May 10 18:02:20 PDT 2018

MEME version 4.12.0

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.212 C 0.287 G 0.288 T 0.214


MOTIF CMGGAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CMGGAA     TTCCKG        122         47   2.3e-010   7.7e-006
#           CCGGAA     TTCCGG         68         22   2.4e-007   8.0e-003
#           CAGGAA     TTCCTG         59         26   1.4e-004   4.5e+000

letter-probability matrix: alength= 4 w= 6 nsites= 143 E= 7.7e-006
0.000000 1.000000 0.000000 0.000000
0.440559 0.559441 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TGACTCAB DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGACTCAB   VTGAGTCA         40          4   4.9e-009   1.6e-004
#         TGACTCAC   GTGAGTCA         19          1   1.8e-005   5.7e-001
#         TGACTCAG   CTGAGTCA         13          1   8.7e-004   2.8e+001
#         TGACTCAT   ATGAGTCA         13          2   3.5e-003   1.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 59 E= 1.6e-004
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.338983 0.322034 0.338983


MOTIF CGGAAC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CGGAAC     GTTCCG         49          9   2.2e-008   7.3e-004
#           CGGAAC     GTTCCG         49          9   2.2e-008   7.3e-004

letter-probability matrix: alength= 4 w= 6 nsites= 51 E= 7.3e-004
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ACGTSAY DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     ACGTSAY    RTSACGT         42          6   2.9e-008   9.4e-004
#          ACGTCAC    GTGACGT         18          3   6.8e-004   2.2e+001
#          ACGTGAT    ATCACGT          9          0   1.9e-003   6.1e+001
#          ACGTCAT    ATGACGT         14          2   2.0e-003   6.4e+001
#          ACGTGAC    GTCACGT         11          1   3.1e-003   9.9e+001

letter-probability matrix: alength= 4 w= 7 nsites= 50 E= 9.4e-004
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.640000 0.360000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.560000 0.000000 0.440000


# Stopping reason: E-value threshold exceeded
#    Running time: 19.30 seconds