Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF311.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF311.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 598 sequences, 299000 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF311.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
CACACACASACACACA | 16 | CACACACACACACACA |
KGKRWKGRTGDDKGDGWKGRTG | 22 | TGTGAGGATGGGGGTGAGGATG |
TGTGTGTGTGTG | 12 | TGTGTGTGTGTG |
AYCAYCAYCATCAYCAYCAYYAY | 23 | ATCATCACCATCACCATCATCAC |
GTGTGTG | 7 | GTGTGTG |
CATCHHYMYMWCCATC | 16 | CATCACTCTCTCCATC |
AATGGAATGGAATGGAAT | 18 | AATGGAATGGAATGGAAT |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | 43 | AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACTGGGCCC |
CATCCATCC | 9 | CATCCATCC |
ACACASASA | 9 | ACACACAGA |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF311.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.260 C 0.240 G 0.240 T 0.260
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr14 | + | 103204911 | 103204953 | 1.2e-26 | 6.59e-21 | agtgcactcagacccagtggattaacatccaaaaactgggccc |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr19 | + | 37365145 | 37365187 | 4.63e-26 | 1.27e-20 | agtgcactcagacccagaggattaacatccaaaaactgggccc |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr13 | - | 41148842 | 41148884 | 8.15e-24 | 1.49e-18 | AGTGCACTCAGACCCAGTGGATTTACATCCAAAATTCGGGCCC |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr4 | + | 25223942 | 25223984 | 1.13e-23 | 1.55e-18 | agtgcactcagaaccagcagattaacatccgaaaactgggccc |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr22 | - | 19316863 | 19316905 | 8.51e-23 | 9.32e-18 | AGTGCACTCTGGCCTAGTGGATTAACATCCAAAGACCGGGCCT |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr21 | + | 38229460 | 38229502 | 2.55e-14 | 2.33e-09 | agtgtgctcaggcccagcagattaacaaccaaaggctgagtcc |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr8 | + | 43124576 | 43124618 | 9.76e-11 | 7.63e-06 | agtgcactcagacccagctgataacattcaaaaactgggccca |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr17 | - | 81170400 | 81170442 | 6.83e-07 | 0.0467 | AGGCCAGACTGGAGCAGGGGGTCCTAATGCAATGACTGGGGCC |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr5 | + | 11240943 | 11240985 | 1.61e-06 | 0.0981 | tgagcacacacacccaatacatatacacccacatcatgcacac |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr1 | - | 228782455 | 228782497 | 2.89e-06 | 0.158 | AGACCACACACACACAGACCATGTACACACACAGACCATACAC |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr16 | - | 57628709 | 57628751 | 4.27e-06 | 0.213 | TCAGGATCCACCCCCAGAGGCTTAACCTGCCAGCCCTGGTCCC |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr19 | + | 29672100 | 29672142 | 5.97e-06 | 0.272 | agaaaacacacaagcaatgaatagacaagcaaacagcaggtcc |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr1 | - | 223629244 | 223629286 | 8.55e-06 | 0.36 | AGACCACGCAGAGCCAGCTCTTCATTATCCAAGGTCAGGAGGG |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr20 | + | 31067187 | 31067229 | 9.61e-06 | 0.376 | aatggaatcaacaccagtggaatgaaatggaaaggagcggaat |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr1 | + | 11374451 | 11374493 | 1.23e-05 | 0.436 | agtgCTCTCTGGCCAGGTGCAATCTCCTTCCTGTTCAGCTCCT |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr3 | - | 24265059 | 24265101 | 1.27e-05 | 0.436 | AGTCTACTGATGGCTAACCCTTTTTTATCCAAAGGTCAGTTCT |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr8 | - | 143598352 | 143598394 | 1.44e-05 | 0.465 | GGTGCACTCGGGCCCGTAGATCTGGCGCGCGAAGGCCTCGGCC |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr20 | + | 44188724 | 44188766 | 1.62e-05 | 0.484 | TGATAACTTAGGCCACGTGAAGTCACTGCGGAAGTCTTGTTCC |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr3 | - | 99868616 | 99868658 | 1.75e-05 | 0.484 | AGAGCACCCAAACTGTAAGTTTAAAAACCCATTATTTGGCCTT |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr1 | + | 33364501 | 33364543 | 1.77e-05 | 0.484 | AGTCACCTCTGCCCAGGGAACTGTATAGCCCAAGACAGGTGCT |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr17_KI270729v1_random | + | 24250 | 24292 | 2.66e-05 | 0.661 | aatggaatcaacccgagtggaatggaatgcaatggcatggaat |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr1 | + | 225707025 | 225707067 | 2.71e-05 | 0.661 | GGTGCTTAAAAAGCTTACACAGTAACCTCCAAGGACCAGGTTT |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr19 | - | 1524838 | 1524880 | 2.78e-05 | 0.661 | ACAATACCCAGACACAGCACAGGAACACACAAACACATGAACA |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr19 | - | 41936729 | 41936771 | 3.95e-05 | 0.887 | AAGTCACACTGATACAGACACACACCACACAAAAATGCTGCCC |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr2 | - | 171631507 | 171631549 | 4.34e-05 | 0.887 | TAGGTGCACCAGCTCAGCGGATTTGCATCCAGAAGGCTGAGAC |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr19 | + | 58182304 | 58182346 | 4.55e-05 | 0.887 | AGAGCACCCTGGGCCCAAGGATGGGTGGCACACACCAGGTCCT |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr1 | + | 25768969 | 25769011 | 4.63e-05 | 0.887 | actacacacactcccctcacatatacatacactacacactccc |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr1 | - | 234247493 | 234247535 | 4.93e-05 | 0.887 | ACTGAACAATGGACCATCCAATCAACCTACTGAACAATGGACC |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr19 | - | 1524702 | 1524744 | 5.08e-05 | 0.887 | CAAACACACAAGCACACCACATGAACACACAACACCCAGACAC |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr19 | + | 41916502 | 41916544 | 5.1e-05 | 0.887 | ATCTCACACAGAAACAAAGACACAAAATCACAAATCCTAGACA |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr22 | + | 23954785 | 23954827 | 5.23e-05 | 0.887 | agttcactcacatcacacacatatacacccacacataaacaca |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr12 | + | 132156509 | 132156551 | 5.33e-05 | 0.887 | actacacacacaaccactacacgtaccactacacactacacac |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr10 | - | 79378639 | 79378681 | 5.5e-05 | 0.887 | CGTGCACTCACACATCTCATATGTGCACACCCACACAGCTCAC |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr22 | + | 23954745 | 23954787 | 5.51e-05 | 0.887 | agttcactcacatcacacacatatacacccacatacacacagt |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr17_KI270729v1_random | + | 22961 | 23003 | 5.76e-05 | 0.899 | aatggaatcatgccgagtggaatgtaatgtaatgtaatggaat |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr7 | + | 148921262 | 148921304 | 5.92e-05 | 0.899 | TCAGCACACCTAAATCTCAGCCTCACATGCATACACTCTGCCc |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr14 | - | 103205047 | 103205089 | 6.31e-05 | 0.899 | TATGCACCTGTCACAATTTGATTAACTGCCTATGTTCTGTCTC |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr1 | + | 182236785 | 182236827 | 6.43e-05 | 0.899 | gttgcaaatatacacagcacaaatacacacacaaatagaccac |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr7 | + | 158262489 | 158262531 | 6.65e-05 | 0.899 | catacatgcacacacactgcacacacattcacacactgcacac |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr17 | - | 80219999 | 80220041 | 6.73e-05 | 0.899 | AGGGCAGCAAAGGCTGGAGGAGTGAGCCCCAGCATCCAGCACC |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr1 | + | 206004673 | 206004715 | 6.73e-05 | 0.899 | cttacacacagaagcaacacatatgcataccacacacatgcac |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr19 | - | 39073940 | 39073982 | 7.06e-05 | 0.921 | CCTCCCAGCAGAACCATTTCCTTTCATCCCAAACTTTGAGCTC |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr19 | - | 40964377 | 40964419 | 7.52e-05 | 0.957 | AGATCATTTGGACACAGGACAGGGAACAACACACACTGGGGCC |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr19 | + | 39319606 | 39319648 | 8.02e-05 | 0.998 | AGAAAATACTGAACCACAGTAGCACAGTCAGTAGACAGGCCCA |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr1 | + | 32471604 | 32471646 | 8.35e-05 | 1 | AGAGGACTCAGGTGAGCTCCCTTAGCATTCATCAGCCCTGCCA |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr1 | + | 235589126 | 235589168 | 8.89e-05 | 1 | tgtcatcacagccatatagccataacatcggaaggctcatcat |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr10 | + | 41904200 | 41904242 | 9.74e-05 | 1 | actgaaatcaacccgagtggaatggaatggaatggaatggact |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr5 | - | 49656411 | 49656453 | 9.74e-05 | 1 | AATGGAATCAACCCGAGTGGAATGGCATGGAATGGAATGGAAT |
AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC | MEME-8 | chr10 | + | 41904260 | 41904302 | 9.91e-05 | 1 | aatggaatcaacccgagtggaatgaaatggaatggaatggagt |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF311.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_4 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF311.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif AGTGCACTCAGACCCAGTGGATTAACATCCAAAAACYGGGCCC /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF311.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF311.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF311.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF311.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_4 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF311.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF311.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF311.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF311.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.