Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF300.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF300.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Database contains 598 sequences, 299000 residues
MOTIFS /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF300.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
HNNRDTYTTGGCWYRGTGCCAR | 22 | TTGAGTCTTGGCACAGTGCCAA |
TGTGTGTGTGTGTGTGTGTG | 20 | TGTGTGTGTGTGTGTGTGTG |
TCYCTCYCTCTCTCYCTCYYTCYYTCY | 27 | TCTCTCTCTCTCTCTCTCTCTCTCTCT |
CACACACACACACACA | 16 | CACACACACACACACA |
RCCTGTAATCCCAGCWMYTTGGGAGGCYGAG | 31 | GCCTGTAATCCCAGCTATTTGGGAGGCTGAG |
TCRMCCAGRCTGGARTGSARTG | 22 | TCACCCAGGCTGGAGTGCAGTG |
TTTTCAGATAATTGTGGATATT | 22 | TTTTCAGATAATTGTGGATATT |
MCACAMMCACCACAMACAYMMCAMWCMCCMC | 31 | ACACACACACCACACACACCACAAACACCAC |
AAGTGGTAGTTTCTTAAAGGTT | 22 | AAGTGGTAGTTTCTTAAAGGTT |
TCTTTCTCTCTYTCTC | 16 | TCTTTCTCTCTCTCTC |
Random model letter frequencies (/srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF300.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background):
A 0.268 C 0.232 G 0.232 T 0.268
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
TTTTCAGATAATTGTGGATATT | MEME-7 | chr17 | - | 62019065 | 62019086 | 1.27e-13 | 7.18e-08 | TTTTCAGATAATTGTGGATATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr2 | - | 181617848 | 181617869 | 8.97e-13 | 2.54e-07 | TGTTCAGATAATTGTGGATATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr2 | - | 31927423 | 31927444 | 1.79e-12 | 3.37e-07 | TTTGCAGATAATTGTGGATATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr14 | + | 52622170 | 52622191 | 3.88e-12 | 5.48e-07 | ttttcagataattgtggatatc |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr9 | - | 123250134 | 123250155 | 7.77e-12 | 8.79e-07 | TTTTCAGATAATTTTGGATATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr1 | + | 42823097 | 42823118 | 2.08e-11 | 1.96e-06 | ttttcagataatcgtggatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr4 | - | 7874279 | 7874300 | 2.82e-11 | 2.28e-06 | TTTTCAGAAAATTGTAGACATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr7 | - | 23190180 | 23190201 | 4.22e-11 | 2.83e-06 | TTTTCAAATAACTGTGGACATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr11 | - | 43899931 | 43899952 | 4.5e-11 | 2.83e-06 | TTTTCAAATAACTGTAGATATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr1 | + | 56410330 | 56410351 | 6.57e-11 | 3.71e-06 | tattcagataactgtggacatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr1 | - | 213128061 | 213128082 | 1.32e-10 | 6.8e-06 | TTTTCAAATAATTATGAATATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr13 | - | 41008726 | 41008747 | 1.72e-10 | 8.09e-06 | ACTTCAGATAATTGTGGATATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr17 | - | 49664199 | 49664220 | 2.05e-10 | 8.92e-06 | TTTTCAGACAATTGTGCATATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr2 | - | 214794308 | 214794329 | 5.93e-10 | 2.4e-05 | TTTTTAGATAATTGTGGCTATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr10 | - | 22571717 | 22571738 | 8.81e-10 | 3.32e-05 | TTTTTGGATAATTGTAGATATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr1 | - | 27265162 | 27265183 | 1.46e-09 | 5.15e-05 | TTTTCAGGTAACTGTGTATATC |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr16 | - | 24276017 | 24276038 | 1.6e-09 | 5.32e-05 | TTTTGAAATAACTGTGAATATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr2 | - | 230201901 | 230201922 | 1.83e-09 | 5.76e-05 | TTTTGAGATATCTGTGGATATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr2 | - | 71477835 | 71477856 | 2.54e-09 | 7.56e-05 | CTTTCAGATAACTGTGAATATC |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr18 | + | 75355500 | 75355521 | 4.59e-09 | 0.00013 | ctttcagataattgtagacctt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr13 | - | 33506787 | 33506808 | 7.82e-09 | 0.000211 | TTTTTAGATAATTGTATGTATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr20 | + | 58431038 | 58431059 | 1.04e-08 | 0.000267 | ttttcagataaatctgaacatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr9 | + | 124762538 | 124762559 | 1.68e-08 | 0.000414 | ttttaaagtaattgtggatagt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr10 | - | 100388434 | 100388455 | 2.47e-08 | 0.000582 | TCAATAGATAATTGTGGATATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr11 | + | 115335494 | 115335515 | 3.28e-08 | 0.000742 | ttttcagataattatggtttta |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr20 | + | 57861716 | 57861737 | 4.36e-08 | 0.000949 | tttgcagataattatgggcagt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr10 | - | 48856381 | 48856402 | 5.21e-08 | 0.00109 | TCTTCAGATAACTGGATATTTT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr7 | - | 27426939 | 27426960 | 6.61e-08 | 0.00131 | TTTTCAGATAATTCCAGATAAT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr1 | + | 172205776 | 172205797 | 6.74e-08 | 0.00131 | ttttcagattattttgtagata |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr8 | + | 71837031 | 71837052 | 1.23e-07 | 0.00228 | attgcaagtaattgtgaacatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr22 | + | 35796520 | 35796541 | 1.25e-07 | 0.00228 | ttctcagaaaactgtggagtct |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr1 | - | 20756216 | 20756237 | 1.73e-07 | 0.00305 | CTTTGAGATAGTTGTAGAAATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270466v1 | + | 707 | 728 | 2.85e-07 | 0.00489 | tgtacagaatacaatatatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 3066 | 3087 | 3.2e-07 | 0.00533 | tgtacagtatataatgcatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 3359 | 3380 | 3.53e-07 | 0.0057 | tgtacagtttacaatatatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270466v1 | + | 330 | 351 | 5.24e-07 | 0.00706 | tgtacagtatataatatatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270466v1 | + | 372 | 393 | 5.24e-07 | 0.00706 | tgtacagtatataatatatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270466v1 | + | 623 | 644 | 5.24e-07 | 0.00706 | tgtacagtatataatatatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 2149 | 2170 | 5.24e-07 | 0.00706 | tgtacagtatataatatatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 2519 | 2540 | 5.24e-07 | 0.00706 | tgtacagtatataatatatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 3276 | 3297 | 5.24e-07 | 0.00706 | tgtacagtatataatatatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 3276 | 3297 | 5.24e-07 | 0.00706 | tgtacagtatataatatatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr3 | - | 24404381 | 24404402 | 6.68e-07 | 0.00879 | TTTTATGATAAGTGTGAAAATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr8 | - | 71837115 | 71837136 | 6.92e-07 | 0.00885 | TGTTTAGCTAATTTTGGATTTC |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 2477 | 2498 | 7.2e-07 | 0.00885 | tgtacagtatataatacatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 3484 | 3505 | 7.2e-07 | 0.00885 | tgtacagtatataatacatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr9 | + | 124075907 | 124075928 | 7.67e-07 | 0.00922 | tttaagacaaattatggatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr15 | + | 39768707 | 39768728 | 9.08e-07 | 0.0106 | tattcagataattggacagtct |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270466v1 | + | 456 | 477 | 9.39e-07 | 0.0106 | tgtacagcatataatatatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 2191 | 2212 | 9.39e-07 | 0.0106 | tgtacagcatataatatatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 2275 | 2296 | 1.07e-06 | 0.0112 | tgtacagtatacaatatatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 2896 | 2917 | 1.07e-06 | 0.0112 | tgtacagtatacaatatatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 3317 | 3338 | 1.07e-06 | 0.0112 | tgtacagtatacaatatatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 3317 | 3338 | 1.07e-06 | 0.0112 | tgtacagtatacaatatatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 2107 | 2128 | 1.27e-06 | 0.0131 | tgtgcagcatataatatatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 2233 | 2254 | 1.73e-06 | 0.0175 | tgtacagaatataatatatctt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270466v1 | + | 497 | 518 | 2.13e-06 | 0.0212 | tgtacagtatataatatatact |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr2 | - | 198914123 | 198914144 | 2.52e-06 | 0.0246 | CACTCAGATAACTGGATATACT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270466v1 | + | 539 | 560 | 2.84e-06 | 0.0246 | tgtacagtatataatacatact |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 2065 | 2086 | 2.84e-06 | 0.0246 | tgtacagtatataatacatact |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 3526 | 3547 | 2.84e-06 | 0.0246 | tgtacagtatataatacatact |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr4 | - | 49709334 | 49709355 | 2.84e-06 | 0.0246 | TGTACAGTATATAATACATACT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr4 | - | 49709376 | 49709397 | 2.84e-06 | 0.0246 | TGTACAGTATATAATACATACT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr4 | - | 49709418 | 49709439 | 2.84e-06 | 0.0246 | TGTACAGTATATAATACATACT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr4 | - | 49709502 | 49709523 | 2.84e-06 | 0.0246 | TGTACAGTATATAATACATACT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr6 | - | 1171117 | 1171138 | 2.87e-06 | 0.0246 | CCTTCAGAAAACTGTGTACTCC |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr10 | - | 99675950 | 99675971 | 3.27e-06 | 0.0276 | CTTTCAGATCATTCTGAATACT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr1 | - | 154295791 | 154295812 | 3.49e-06 | 0.029 | TCTGCCGTTAATTGTGTACTTC |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr4 | - | 49709208 | 49709229 | 5.53e-06 | 0.0447 | TGTACAGTATATAATACACACT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr4 | - | 49709460 | 49709481 | 5.53e-06 | 0.0447 | TGTACAGTATATAATACACACT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 3234 | 3255 | 5.81e-06 | 0.0449 | tgtacagtatataatatgtatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 3234 | 3255 | 5.81e-06 | 0.0449 | tgtacagtatataatatgtatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 3150 | 3171 | 5.89e-06 | 0.0449 | tgtacagtatgtaatatatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 3150 | 3171 | 5.89e-06 | 0.0449 | tgtacagtatgtaatatatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270466v1 | + | 288 | 309 | 5.95e-06 | 0.0449 | tgtacggtatatagtatatact |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 3192 | 3213 | 6.37e-06 | 0.0468 | tgtacagtatataatatttatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 3192 | 3213 | 6.37e-06 | 0.0468 | tgtacagtatataatatttatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 2356 | 2377 | 6.59e-06 | 0.0478 | tgtacagtatataatatacagt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr9 | + | 124762444 | 124762465 | 6.82e-06 | 0.0488 | cattcagtatattgtgattttt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr4 | - | 49709250 | 49709271 | 7.43e-06 | 0.0525 | TCTACAGCATATAATACATACT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr4 | - | 49709166 | 49709187 | 7.69e-06 | 0.0537 | TGTACAGTATATAATACATAAT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr5 | - | 140252504 | 140252525 | 8.33e-06 | 0.0575 | TTTTTGATTAATAGTAGAGCTT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr4 | - | 49709627 | 49709648 | 9.38e-06 | 0.0632 | TGTACAGTTTATTATAAATGTT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 3025 | 3046 | 9.38e-06 | 0.0632 | tgtacagtttattataaatgtt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr22 | - | 36061638 | 36061659 | 1.08e-05 | 0.0718 | CTTTCAGATAATTGTCTTCTTT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr5 | + | 10601598 | 10601619 | 1.13e-05 | 0.0735 | atttcagcaatctttgtatttt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr2 | + | 214794083 | 214794104 | 1.13e-05 | 0.0735 | tctacaaaaaactacaaaaatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr16 | + | 24276225 | 24276246 | 1.17e-05 | 0.0754 | tgttctggaaaatatagttatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr8 | - | 60752032 | 60752053 | 1.2e-05 | 0.076 | TTTAAAGAATATCACAAATATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr16 | - | 75461851 | 75461872 | 1.26e-05 | 0.079 | TTTTCTGAAAATATTAAACTTC |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr6 | + | 85600919 | 85600940 | 1.4e-05 | 0.0872 | TGATGAGATAACTTGGCAAATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr5 | + | 73032321 | 73032342 | 1.59e-05 | 0.0975 | TTTAAAATTTTTAATATATATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr4 | - | 49709544 | 49709565 | 1.7e-05 | 0.102 | AGTACAGTATATAATACATACT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr9 | - | 87816102 | 87816123 | 1.7e-05 | 0.102 | TTTGTAGTGTATTGTGTATTTT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr18 | - | 75355476 | 75355497 | 1.86e-05 | 0.111 | TACTCAGATATTTCTGCCTTTT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr4 | - | 49709292 | 49709313 | 1.89e-05 | 0.111 | TGTACAGTATATAATATGTACT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr21 | + | 26140420 | 26140441 | 1.97e-05 | 0.115 | TTCTAAGCTAACAATGGACAAC |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr6 | - | 2108994 | 2109015 | 2.01e-05 | 0.115 | CATTCAAATAACTGTATTTCCT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr11 | + | 43900127 | 43900148 | 2.01e-05 | 0.115 | tgtgttggaaattatagttatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr5 | - | 52987101 | 52987122 | 2.05e-05 | 0.116 | ACAGGAGATAATTCTGGATAAT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr5 | + | 145975839 | 145975860 | 2.09e-05 | 0.117 | ttatctgtaaactggagataat |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr21 | + | 31397872 | 31397893 | 2.11e-05 | 0.117 | TTTACAGATAACAAAGGAACTT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr8 | + | 97942269 | 97942290 | 2.34e-05 | 0.129 | TCTTCTATAAAGTGTGGATTTA |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr13 | + | 67224434 | 67224455 | 2.4e-05 | 0.13 | TCTACAGGCTATTATCGATATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 3567 | 3588 | 2.48e-05 | 0.13 | tgtaacgtatataatatatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr15 | + | 71201557 | 71201578 | 2.5e-05 | 0.13 | ATTGGAAATAGCTGTGGTTTTT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | - | 2436 | 2457 | 2.51e-05 | 0.13 | TTTATAATAAACTGTACATAAA |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | - | 3021 | 3042 | 2.51e-05 | 0.13 | TTTATAATAAACTGTACATAAA |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr4 | + | 49709631 | 49709652 | 2.51e-05 | 0.13 | tttataataaactgtacataaa |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr16 | + | 53776860 | 53776881 | 2.52e-05 | 0.13 | tcagctattaaatgtagatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270466v1 | + | 414 | 435 | 2.58e-05 | 0.131 | tgtacagtacataatacatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270466v1 | + | 339 | 360 | 2.64e-05 | 0.133 | tataatatatattttggatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr2 | - | 214794079 | 214794100 | 2.79e-05 | 0.138 | TTTGTAGTTTTTTGTAGAGACA |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270466v1 | + | 246 | 267 | 2.81e-05 | 0.138 | tgtacagtgtataatacatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr5 | + | 146213543 | 146213564 | 2.81e-05 | 0.138 | TATTCAGAAACATGTAAATTTT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 2854 | 2875 | 2.87e-05 | 0.14 | tggacagtatatagtatatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 3108 | 3129 | 2.96e-05 | 0.142 | cgtacagtatataatacataat |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 3108 | 3129 | 2.96e-05 | 0.142 | cgtacagtatataatacataat |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr21 | - | 37878911 | 37878932 | 3.36e-05 | 0.16 | CGCACAAATAATTGTGAAACTC |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr5 | - | 125198829 | 125198850 | 3.46e-05 | 0.163 | TTTACAGATTAGTGTAATGTTA |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270466v1 | + | 651 | 672 | 3.48e-05 | 0.163 | actttaatatattatgtacact |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr15 | + | 95743011 | 95743032 | 3.66e-05 | 0.17 | AGTGGAGAAAATTGGGAAGAAT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 3043 | 3064 | 3.91e-05 | 0.179 | tgttttgttaatttcatatttt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr7 | + | 112572963 | 112572984 | 3.93e-05 | 0.179 | TGATCAGATAAATGCGTTCTTT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr3 | - | 48038929 | 48038950 | 3.95e-05 | 0.179 | TTTTGTATTTTTTGTAGAGACT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr1 | - | 56410482 | 56410503 | 4.1e-05 | 0.184 | TGTACGGCCAATTATAAAATTT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 2440 | 2461 | 4.29e-05 | 0.189 | tgtacagtttattataaatggt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr10 | - | 10728736 | 10728757 | 4.29e-05 | 0.189 | TCTGCAGTTTACAATGTGCATA |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270466v1 | + | 581 | 602 | 4.32e-05 | 0.189 | tgtgcagcgtataatatatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr1 | - | 27264967 | 27264988 | 4.36e-05 | 0.189 | TCTACAAAAAAATACAAAAATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr7 | + | 5693155 | 5693176 | 4.38e-05 | 0.189 | tctgccaatttttgtaaatata |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr18 | - | 70465036 | 70465057 | 4.6e-05 | 0.197 | CTTTGGGAAAACATTGTACCTT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr2 | - | 71477612 | 71477633 | 4.64e-05 | 0.197 | TGTTCAGTCAGTTACGTAGATC |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr2 | - | 214794401 | 214794422 | 4.73e-05 | 0.2 | TATTCAGTCTATTGTGATACTT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr11 | + | 43899819 | 43899840 | 4.77e-05 | 0.2 | TCTTGAAATAAAAGTAGTTTCT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr1 | - | 42822962 | 42822983 | 4.99e-05 | 0.207 | ATCTAAAATATTTATAGCCATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr7 | - | 27426699 | 27426720 | 5.01e-05 | 0.207 | ATATTAAAAAATTATATCCATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr1 | + | 65109914 | 65109935 | 5.06e-05 | 0.207 | ACTTAGGATAATAGTAACTTTT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr10 | + | 93209077 | 93209098 | 5.2e-05 | 0.212 | TTTTTAAAATTCACTGAATTTT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr5 | + | 154223495 | 154223516 | 5.42e-05 | 0.219 | tgtagagcaagaagtgaacatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr1 | + | 224211968 | 224211989 | 5.6e-05 | 0.224 | atttcaaaatattttatagaga |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270466v1 | + | 665 | 686 | 5.62e-05 | 0.224 | tgtacactatataatatatatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrX | + | 53415827 | 53415848 | 5.71e-05 | 0.226 | ctttaaaaaaatagtgaaaaaa |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr8 | + | 102369251 | 102369272 | 5.8e-05 | 0.228 | tttccagataaccacaggtatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr13 | + | 25584978 | 25584999 | 5.87e-05 | 0.229 | TTTTAAAATATATATATCTATC |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr17 | + | 62019291 | 62019312 | 5.92e-05 | 0.229 | tttggaaaatatagtggatgtc |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr1 | - | 154295997 | 154296018 | 5.97e-05 | 0.23 | TTTTTAAAAATTTTTATGTAGT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr5 | - | 54249722 | 54249743 | 6.16e-05 | 0.234 | TCCTCAGACAACTAGGGATTGA |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr10 | - | 125768670 | 125768691 | 6.16e-05 | 0.234 | ATCTTAATTTGCTATGAATATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr17 | + | 80642954 | 80642975 | 6.29e-05 | 0.237 | ttttttggaaaaaatagttatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr14 | - | 90972507 | 90972528 | 6.36e-05 | 0.238 | TGTTTAGTTAAAAGTCCACATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr5 | + | 10362720 | 10362741 | 6.55e-05 | 0.242 | ttttcagatgtttgtatgttct |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr1 | - | 20756119 | 20756140 | 6.55e-05 | 0.242 | TATACAATTTAATTTATATAAT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr8 | - | 102368984 | 102369005 | 6.6e-05 | 0.242 | TTTTAAAATATTCACAAATTTT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr11 | + | 10211778 | 10211799 | 6.76e-05 | 0.247 | ttctcggttaattagattcagt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr5 | - | 10362525 | 10362546 | 7.06e-05 | 0.256 | TTCTAAATAATTTGTATTCATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr1 | - | 235068218 | 235068239 | 7.11e-05 | 0.256 | TGTTCTGACAAGTATGCGCTTT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr1 | - | 234554805 | 234554826 | 7.29e-05 | 0.261 | TTTTAAATTTTTTGTACAGACA |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr1 | + | 162673448 | 162673469 | 7.67e-05 | 0.271 | TGTTAGGGCAACTCTGGCTTTT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | + | 2983 | 3004 | 7.7e-05 | 0.271 | tgtacagtatatgatatatagt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr1 | + | 45876215 | 45876236 | 7.82e-05 | 0.271 | tctagggatatttatagagtgt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr11 | + | 49995669 | 49995690 | 7.82e-05 | 0.271 | ttttctagtaacagaggatctt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr6 | - | 131132711 | 131132732 | 7.82e-05 | 0.271 | TTTTCAGATTTCCAGAAATACA |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr6 | - | 85600997 | 85601018 | 7.91e-05 | 0.272 | CCATATGAAAATTATATATTTT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr5 | - | 110054640 | 110054661 | 7.94e-05 | 0.272 | TTTACAAAATTTTTTATCAATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr6 | - | 134036277 | 134036298 | 8.23e-05 | 0.278 | TTTTTGGACAACTGCAAGTTTT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr19 | + | 32387601 | 32387622 | 8.26e-05 | 0.278 | ttaacagttttttatattgatt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr9 | + | 92607178 | 92607199 | 8.26e-05 | 0.278 | tgtgcagtaagcattgaagttt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr1 | - | 181127337 | 181127358 | 8.46e-05 | 0.283 | ATTAAAAAAAAAAATGGAGATA |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr2 | - | 181617649 | 181617670 | 8.56e-05 | 0.284 | CTTTTGGAAAATTTGGTTTACT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr4 | - | 7874158 | 7874179 | 8.62e-05 | 0.284 | AGTTTAGTTTATTTTGCTCTTT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr12 | - | 806804 | 806825 | 8.66e-05 | 0.284 | TGTTTTACTAATTCTGGAATTC |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr12 | + | 45913166 | 45913187 | 8.69e-05 | 0.284 | TGTTAAATTAAGTATACGCATC |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr7 | + | 20514727 | 20514748 | 8.79e-05 | 0.286 | AGAATAAAATTTTGTAGATATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr5 | - | 125198528 | 125198549 | 8.89e-05 | 0.287 | TTTGGTGTAAAATGGAGACATC |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr11 | + | 75969909 | 75969930 | 9.03e-05 | 0.29 | CTATCAGCTTATCCTGGATCCT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr2 | - | 170218800 | 170218821 | 9.07e-05 | 0.29 | TTCAGTGATAATTGTATTAATA |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr4 | - | 49709586 | 49709607 | 9.14e-05 | 0.29 | TGTACAGTGTATAATATATAGT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr10 | - | 125768574 | 125768595 | 9.28e-05 | 0.293 | TTTTCCAAGTATATTAAATATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr6 | - | 111687806 | 111687827 | 9.39e-05 | 0.294 | AATAGGGATAATAATAGTTATC |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr6 | + | 80132963 | 80132984 | 9.43e-05 | 0.294 | TTTAAAGGATAATTTGTATTTA |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr5 | - | 82050164 | 82050185 | 9.5e-05 | 0.295 | TAATAAGGTAATTCTGTATATG |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr1 | + | 45876347 | 45876368 | 9.57e-05 | 0.295 | tgtgtagttattaagggaattt |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr5 | - | 124948885 | 124948906 | 9.61e-05 | 0.295 | TCTAAGGAAAAGACTGAATTTT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chrUn_KI270467v1 | - | 3439 | 3460 | 9.83e-05 | 0.296 | TTTATAATAAACTCTACATAAA |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr2 | - | 230202133 | 230202154 | 9.83e-05 | 0.296 | TTTTATGAAAAGTAAATATATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr12 | + | 65327180 | 65327201 | 9.87e-05 | 0.296 | TTTTTAGTTTACTACAAAATGT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr11 | - | 115335295 | 115335316 | 9.91e-05 | 0.296 | TGCTGTGGAAAATGTAGTTATT |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr16 | + | 50369640 | 50369661 | 9.95e-05 | 0.296 | TTTTCAGATAAGCTCGTAATTA |
TTTTCAGATAATTGTGGATATT | MEME-7 | chr14 | + | 96506951 | 96506972 | 9.95e-05 | 0.296 | ttaattgaaaatactaaatact |
Command line:
/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF300.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_6 --bgfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF300.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background --motif TTTTCAGATAATTGTGGATATT /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF300.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF300.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF300.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa
Settings:
output_directory = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF300.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/fimo_out_6 | MEME file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF300.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/meme_out/meme.xml | sequence file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF300.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/ZNF300.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.fa |
background file name = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/EncodeOtherZnfData/Encode3Datahg38/ZNF300.IDR0.05.filt.narrowPeak.top600.summitPlusMinus250bp.MemeChipResults/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.